Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06132.t1 | AET05311.1 | 87.7 | 447 | 40 | 3 | 1 | 434 | 54 | 498 | 8.70E-223 | 782.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06132.t1 | Q8L3W1 | 31.7 | 322 | 164 | 11 | 1 | 269 | 21 | 339 | 4.8e-28 | 127.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06132.t1 | G7L911 | 87.7 | 447 | 40 | 3 | 1 | 434 | 54 | 498 | 6.3e-223 | 782.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06132.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06132.t1 | MTR_8g103940 | 87.696 | 447 | 40 | 3 | 1 | 434 | 54 | 498 | 0.0 | 790 |
| MS.gene06132.t1 | MTR_1g108780 | 68.304 | 448 | 126 | 4 | 1 | 432 | 12 | 459 | 0.0 | 619 |
| MS.gene06132.t1 | MTR_1g035460 | 43.457 | 405 | 191 | 12 | 2 | 379 | 2 | 395 | 4.33e-93 | 286 |
| MS.gene06132.t1 | MTR_7g050710 | 35.889 | 287 | 156 | 8 | 1 | 266 | 28 | 307 | 1.90e-46 | 163 |
| MS.gene06132.t1 | MTR_7g050590 | 34.915 | 295 | 146 | 10 | 2 | 266 | 2 | 280 | 1.64e-42 | 152 |
| MS.gene06132.t1 | MTR_3g061370 | 32.759 | 290 | 140 | 7 | 1 | 265 | 22 | 281 | 2.53e-42 | 150 |
| MS.gene06132.t1 | MTR_3g098790 | 33.766 | 308 | 160 | 7 | 2 | 284 | 29 | 317 | 7.59e-42 | 151 |
| MS.gene06132.t1 | MTR_7g050720 | 34.219 | 301 | 151 | 10 | 2 | 266 | 26 | 315 | 4.29e-41 | 149 |
| MS.gene06132.t1 | MTR_5g044670 | 32.215 | 298 | 155 | 8 | 2 | 272 | 32 | 309 | 5.36e-41 | 149 |
| MS.gene06132.t1 | MTR_3g061350 | 33.793 | 290 | 137 | 10 | 1 | 265 | 25 | 284 | 3.34e-40 | 145 |
| MS.gene06132.t1 | MTR_3g061340 | 33.688 | 282 | 132 | 10 | 1 | 262 | 25 | 271 | 3.93e-40 | 145 |
| MS.gene06132.t1 | MTR_3g061340 | 39.394 | 99 | 52 | 3 | 336 | 430 | 180 | 274 | 3.95e-12 | 67.0 |
| MS.gene06132.t1 | MTR_3g061320 | 31.900 | 279 | 152 | 6 | 1 | 265 | 25 | 279 | 1.50e-37 | 138 |
| MS.gene06132.t1 | MTR_3g061320 | 39.583 | 96 | 56 | 2 | 336 | 430 | 185 | 279 | 3.41e-11 | 63.9 |
| MS.gene06132.t1 | MTR_7g050560 | 34.828 | 290 | 136 | 8 | 2 | 266 | 29 | 290 | 4.48e-37 | 138 |
| MS.gene06132.t1 | MTR_7g050580 | 34.106 | 302 | 122 | 9 | 2 | 266 | 29 | 290 | 8.75e-37 | 137 |
| MS.gene06132.t1 | MTR_3g061310 | 30.375 | 293 | 144 | 9 | 1 | 265 | 25 | 285 | 2.62e-34 | 129 |
| MS.gene06132.t1 | MTR_3g061310 | 39.706 | 136 | 72 | 5 | 299 | 430 | 156 | 285 | 6.88e-17 | 80.9 |
| MS.gene06132.t1 | MTR_3g061330 | 31.538 | 260 | 117 | 9 | 1 | 232 | 25 | 251 | 1.31e-33 | 127 |
| MS.gene06132.t1 | MTR_1g035570 | 25.055 | 451 | 239 | 14 | 1 | 429 | 20 | 393 | 6.17e-32 | 125 |
| MS.gene06132.t1 | MTR_3g061290 | 42.857 | 140 | 71 | 2 | 1 | 131 | 25 | 164 | 1.98e-30 | 117 |
| MS.gene06132.t1 | MTR_1g035640 | 26.778 | 478 | 267 | 19 | 1 | 429 | 20 | 463 | 1.33e-25 | 108 |
| MS.gene06132.t1 | MTR_1g035620 | 24.000 | 450 | 260 | 15 | 1 | 431 | 24 | 410 | 1.47e-25 | 108 |
| MS.gene06132.t1 | MTR_5g070440 | 28.467 | 274 | 147 | 9 | 1 | 266 | 36 | 268 | 3.87e-24 | 101 |
| MS.gene06132.t1 | MTR_4g119990 | 29.316 | 307 | 168 | 12 | 1 | 274 | 30 | 320 | 6.26e-24 | 102 |
| MS.gene06132.t1 | MTR_6g061070 | 24.733 | 469 | 281 | 14 | 2 | 430 | 34 | 470 | 2.41e-23 | 102 |
| MS.gene06132.t1 | MTR_3g005490 | 27.178 | 287 | 131 | 8 | 1 | 269 | 36 | 262 | 2.39e-22 | 96.3 |
| MS.gene06132.t1 | MTR_7g050640 | 48.718 | 78 | 40 | 0 | 2 | 79 | 29 | 106 | 6.35e-21 | 88.2 |
| MS.gene06132.t1 | MTR_3g005420 | 26.148 | 283 | 142 | 6 | 1 | 266 | 304 | 536 | 3.32e-20 | 93.2 |
| MS.gene06132.t1 | MTR_3g005480 | 26.132 | 287 | 131 | 8 | 1 | 267 | 36 | 261 | 6.07e-20 | 89.4 |
| MS.gene06132.t1 | MTR_4g068320 | 31.788 | 151 | 97 | 1 | 1 | 145 | 21 | 171 | 2.50e-19 | 90.1 |
| MS.gene06132.t1 | MTR_4g068320 | 30.508 | 177 | 98 | 6 | 124 | 276 | 224 | 399 | 5.25e-14 | 73.9 |
| MS.gene06132.t1 | MTR_3g005460 | 25.180 | 278 | 157 | 8 | 1 | 265 | 277 | 516 | 2.90e-19 | 90.5 |
| MS.gene06132.t1 | MTR_3g005460 | 22.222 | 261 | 133 | 5 | 1 | 254 | 40 | 237 | 1.82e-12 | 69.3 |
| MS.gene06132.t1 | MTR_1g021270 | 20.939 | 554 | 306 | 20 | 1 | 429 | 30 | 576 | 7.00e-19 | 89.4 |
| MS.gene06132.t1 | MTR_1g035490 | 28.767 | 292 | 141 | 13 | 166 | 429 | 75 | 327 | 1.43e-18 | 86.7 |
| MS.gene06132.t1 | MTR_3g005495 | 24.427 | 262 | 139 | 5 | 1 | 257 | 258 | 465 | 1.79e-18 | 87.8 |
| MS.gene06132.t1 | MTR_3g005495 | 34.524 | 84 | 55 | 0 | 1 | 84 | 28 | 111 | 6.24e-13 | 70.9 |
| MS.gene06132.t1 | MTR_6g043890 | 24.910 | 277 | 184 | 6 | 1 | 260 | 30 | 299 | 6.08e-18 | 85.1 |
| MS.gene06132.t1 | MTR_1g050845 | 24.250 | 400 | 214 | 14 | 1 | 383 | 24 | 351 | 2.62e-17 | 85.1 |
| MS.gene06132.t1 | MTR_1g034240 | 42.353 | 85 | 49 | 0 | 1 | 85 | 22 | 106 | 4.55e-16 | 80.1 |
| MS.gene06132.t1 | MTR_1g034240 | 33.043 | 115 | 57 | 4 | 177 | 272 | 285 | 398 | 3.93e-11 | 65.1 |
| MS.gene06132.t1 | MTR_3g061220 | 40.476 | 84 | 37 | 1 | 1 | 84 | 25 | 95 | 5.26e-16 | 74.3 |
| MS.gene06132.t1 | MTR_3g061300 | 40.952 | 105 | 52 | 4 | 329 | 429 | 24 | 122 | 1.34e-15 | 73.6 |
| MS.gene06132.t1 | MTR_1g035520 | 25.397 | 315 | 163 | 13 | 2 | 264 | 88 | 382 | 4.69e-14 | 73.9 |
| MS.gene06132.t1 | MTR_1g021330 | 24.412 | 340 | 192 | 13 | 2 | 283 | 42 | 374 | 7.95e-14 | 73.2 |
| MS.gene06132.t1 | MTR_1g021360 | 23.810 | 273 | 174 | 8 | 2 | 253 | 198 | 457 | 3.03e-13 | 71.6 |
| MS.gene06132.t1 | MTR_1g021435 | 23.692 | 325 | 188 | 12 | 2 | 270 | 38 | 358 | 4.26e-13 | 70.9 |
| MS.gene06132.t1 | MTR_1g021400 | 23.529 | 323 | 183 | 12 | 2 | 272 | 46 | 356 | 7.79e-13 | 70.1 |
| MS.gene06132.t1 | MTR_1g035650 | 27.528 | 178 | 122 | 3 | 1 | 173 | 24 | 199 | 3.43e-12 | 65.9 |
| MS.gene06132.t1 | MTR_3g005440 | 34.524 | 84 | 55 | 0 | 1 | 84 | 35 | 118 | 4.04e-12 | 68.2 |
| MS.gene06132.t1 | MTR_3g005440 | 28.906 | 128 | 86 | 1 | 1 | 128 | 257 | 379 | 2.72e-11 | 65.5 |
| MS.gene06132.t1 | MTR_1g035470 | 33.058 | 121 | 74 | 5 | 2 | 120 | 2 | 117 | 1.79e-11 | 62.0 |
| MS.gene06132.t1 | MTR_1g021410 | 24.138 | 319 | 183 | 13 | 2 | 270 | 38 | 347 | 6.34e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06132.t1 | AT3G18990 | 32.298 | 322 | 162 | 12 | 1 | 269 | 21 | 339 | 2.26e-38 | 142 |
| MS.gene06132.t1 | AT3G18990 | 32.188 | 320 | 161 | 12 | 1 | 267 | 21 | 337 | 1.44e-37 | 140 |
| MS.gene06132.t1 | AT3G18960 | 42.045 | 88 | 51 | 0 | 1 | 88 | 45 | 132 | 2.52e-16 | 77.4 |
| MS.gene06132.t1 | AT4G01580 | 42.045 | 88 | 51 | 0 | 1 | 88 | 45 | 132 | 3.58e-16 | 77.0 |
| MS.gene06132.t1 | AT3G18960 | 42.045 | 88 | 51 | 0 | 1 | 88 | 8 | 95 | 3.65e-16 | 76.6 |
| MS.gene06132.t1 | AT3G18960 | 42.045 | 88 | 51 | 0 | 1 | 88 | 45 | 132 | 4.36e-16 | 77.4 |
| MS.gene06132.t1 | AT1G49475 | 34.021 | 97 | 63 | 1 | 1 | 97 | 49 | 144 | 1.82e-13 | 69.3 |
| MS.gene06132.t1 | AT1G49480 | 33.929 | 112 | 53 | 4 | 177 | 269 | 115 | 224 | 3.55e-13 | 69.3 |
| MS.gene06132.t1 | AT1G49480 | 33.929 | 112 | 53 | 4 | 177 | 269 | 115 | 224 | 3.55e-13 | 69.3 |
| MS.gene06132.t1 | AT1G49480 | 33.929 | 112 | 53 | 4 | 177 | 269 | 115 | 224 | 3.55e-13 | 69.3 |
| MS.gene06132.t1 | AT4G33280 | 24.561 | 285 | 191 | 8 | 2 | 266 | 39 | 319 | 6.09e-12 | 67.0 |
| MS.gene06132.t1 | AT4G31640 | 26.104 | 249 | 146 | 8 | 193 | 434 | 28 | 245 | 2.97e-11 | 65.1 |
Find 63 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAACTTGTCCAAGTTAA+AGG | 0.118978 | 4.1:-2412629 | MS.gene06132:intron |
| GAACAAACTTGTTGAAAATT+TGG | 0.135205 | 4.1:-2412774 | MS.gene06132:CDS |
| CTTGATCATGCTTCACATTT+AGG | 0.162093 | 4.1:+2412476 | None:intergenic |
| TATTTATTAGCATACGAAAA+AGG | 0.247818 | 4.1:+2412384 | None:intergenic |
| CCTTTAACTTGGACAAGTTT+AGG | 0.279816 | 4.1:+2412629 | None:intergenic |
| TTAATGGAGATGGAATTAAT+TGG | 0.309089 | 4.1:-2411886 | MS.gene06132:CDS |
| GTTTGTAGAGGAAAATAAAT+TGG | 0.310756 | 4.1:-2411076 | MS.gene06132:CDS |
| TACTTTAGTTCAAAATCTAC+TGG | 0.361077 | 4.1:+2412222 | None:intergenic |
| TATTTCTTAGTGAAAGCATT+TGG | 0.366998 | 4.1:+2413049 | None:intergenic |
| CTCAATTTCTTATGTGGTTG+AGG | 0.369014 | 4.1:+2412701 | None:intergenic |
| GGAAGTACATTTGACCAAAA+AGG | 0.369637 | 4.1:-2412972 | MS.gene06132:CDS |
| CTTCACATTTAGGCATTTAG+TGG | 0.383770 | 4.1:+2412486 | None:intergenic |
| CAGAGTGGATGTGAATTGAT+TGG | 0.396589 | 4.1:+2411489 | None:intergenic |
| TAATGGAGATGGAATTAATT+GGG | 0.397926 | 4.1:-2411885 | MS.gene06132:CDS |
| AAAACTATCATGTCACATAA+AGG | 0.413575 | 4.1:-2411830 | MS.gene06132:intron |
| CATATTTAACAAGAGTACTT+TGG | 0.415158 | 4.1:-2412837 | MS.gene06132:CDS |
| ACTCAACTTGGTTGACGGTT+CGG | 0.425773 | 4.1:+2411113 | None:intergenic |
| TCTCATTATCCATGACTTGA+AGG | 0.426650 | 4.1:+2412172 | None:intergenic |
| CTGGAGTCTTGAGAAACATT+GGG | 0.426683 | 4.1:+2413008 | None:intergenic |
| CCAATTCTCAATTTCTTATG+TGG | 0.430787 | 4.1:+2412695 | None:intergenic |
| CTTGTGACACAAGTACTTCT+CGG | 0.432076 | 4.1:+2411197 | None:intergenic |
| AAACCTGTGGCATGTAAGAT+TGG | 0.435151 | 4.1:-2411148 | MS.gene06132:CDS |
| ATATTTGGATTCACAAGGGT+TGG | 0.435488 | 4.1:-2412943 | MS.gene06132:CDS |
| CCACATAAGAAATTGAGAAT+TGG | 0.439783 | 4.1:-2412695 | MS.gene06132:CDS |
| AATTTATTATACCTTTAACT+TGG | 0.446187 | 4.1:+2412618 | None:intergenic |
| CCTGTACTCAACTTGGTTGA+CGG | 0.457593 | 4.1:+2411108 | None:intergenic |
| GATCTAGTCTTCTTGCATGT+AGG | 0.464753 | 4.1:+2412743 | None:intergenic |
| TTTGATAATAATTTGAAAGT+GGG | 0.464811 | 4.1:-2412090 | MS.gene06132:CDS |
| TAGAATTACCTTGCGGTGGA+AGG | 0.469307 | 4.1:+2411986 | None:intergenic |
| CTTGGAATGTTAAACATTGT+GGG | 0.475665 | 4.1:-2412146 | MS.gene06132:CDS |
| TTGGCATACCACAGGAAAGA+AGG | 0.492460 | 4.1:-2411575 | MS.gene06132:intron |
| TCATGGATAATGAGAGAACT+TGG | 0.492868 | 4.1:-2412164 | MS.gene06132:CDS |
| ATTTGATAATAATTTGAAAG+TGG | 0.495131 | 4.1:-2412091 | MS.gene06132:CDS |
| TTCGAATCAGTTAATGGAGA+TGG | 0.506219 | 4.1:-2411896 | MS.gene06132:intron |
| TCTGGAGTCTTGAGAAACAT+TGG | 0.510455 | 4.1:+2413007 | None:intergenic |
| ACTTGGAATGTTAAACATTG+TGG | 0.512866 | 4.1:-2412147 | MS.gene06132:CDS |
| TGTGGGAGACATATTAGTAC+TGG | 0.514312 | 4.1:-2412129 | MS.gene06132:CDS |
| AACTTGGTTGACGGTTCGGA+TGG | 0.514973 | 4.1:+2411117 | None:intergenic |
| GCTTTCACTAAGAAATATAG+TGG | 0.526593 | 4.1:-2413043 | MS.gene06132:CDS |
| CGTTATCACCCTTCAAGTCA+TGG | 0.529744 | 4.1:-2412181 | MS.gene06132:CDS |
| ACTCCAACCTGTACTCAACT+TGG | 0.532809 | 4.1:+2411101 | None:intergenic |
| TGTAGAGGAAAATAAATTGG+AGG | 0.533957 | 4.1:-2411073 | MS.gene06132:CDS |
| GAGGAAAATAAATTGGAGGA+TGG | 0.537388 | 4.1:-2411069 | MS.gene06132:CDS |
| TCGCCAATCTTACATGCCAC+AGG | 0.542280 | 4.1:+2411145 | None:intergenic |
| CTCATTATCCATGACTTGAA+GGG | 0.556492 | 4.1:+2412173 | None:intergenic |
| AGAATTACCTTGCGGTGGAA+GGG | 0.558988 | 4.1:+2411987 | None:intergenic |
| TCATGCGGATGTTTACAAAC+CGG | 0.561557 | 4.1:-2411431 | MS.gene06132:intron |
| GAAACATCAGCATGTGTCCA+TGG | 0.562484 | 4.1:+2412891 | None:intergenic |
| CCGTCAACCAAGTTGAGTAC+AGG | 0.579549 | 4.1:-2411108 | MS.gene06132:CDS |
| AGGTTGGAGTAAGTTTGTAG+AGG | 0.581140 | 4.1:-2411088 | MS.gene06132:CDS |
| TGGTGATATTTGGATTCACA+AGG | 0.584168 | 4.1:-2412948 | MS.gene06132:CDS |
| TTCACTTTGATAGTGAAATG+TGG | 0.584688 | 4.1:+2411460 | None:intergenic |
| CAACTAGAATTACCTTGCGG+TGG | 0.590450 | 4.1:+2411982 | None:intergenic |
| ACTTTAGTTCAAAATCTACT+GGG | 0.593567 | 4.1:+2412223 | None:intergenic |
| ATTGGCGCAAGTGAAGATGT+TGG | 0.596112 | 4.1:-2412677 | MS.gene06132:CDS |
| GGAGACATATTAGTACTGGA+TGG | 0.606406 | 4.1:-2412125 | MS.gene06132:CDS |
| CAACCAAGTTGAGTACAGGT+TGG | 0.611957 | 4.1:-2411104 | MS.gene06132:CDS |
| AAACATTCCCTTCCACCGCA+AGG | 0.615531 | 4.1:-2411994 | MS.gene06132:intron |
| ACACATTATTCTATAGACCA+TGG | 0.617727 | 4.1:-2412908 | MS.gene06132:CDS |
| TATGTAAACCTCAAAATGAG+AGG | 0.618304 | 4.1:+2412856 | None:intergenic |
| CAAAGTGAAATCAAGTCATG+CGG | 0.640337 | 4.1:-2411446 | MS.gene06132:CDS |
| AAGTATTTGAAGGAAAAGCA+AGG | 0.649480 | 4.1:-2412204 | MS.gene06132:CDS |
| GGTGATATTTGGATTCACAA+GGG | 0.673550 | 4.1:-2412947 | MS.gene06132:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAATCAAAATATTAAT+TGG | + | chr4.1:2411489-2411508 | None:intergenic | 10.0% |
| !! | AATTTATTATACCTTTAACT+TGG | + | chr4.1:2411433-2411452 | None:intergenic | 15.0% |
| !!! | ATTTGATAATAATTTGAAAG+TGG | - | chr4.1:2411957-2411976 | MS.gene06132:intron | 15.0% |
| !!! | ATTTTTGAAGATGAATTATT+CGG | + | chr4.1:2411600-2411619 | None:intergenic | 15.0% |
| !!! | TTTAGGAATTTTTTTCAATT+TGG | + | chr4.1:2411405-2411424 | None:intergenic | 15.0% |
| !!! | TTTGATAATAATTTGAAAGT+GGG | - | chr4.1:2411958-2411977 | MS.gene06132:intron | 15.0% |
| !! | AAACATAATCATGAGATAAA+TGG | + | chr4.1:2412724-2412743 | None:intergenic | 20.0% |
| !! | AGGTATAATAAATTCATGAT+TGG | - | chr4.1:2411439-2411458 | MS.gene06132:CDS | 20.0% |
| !! | ATTTATTAGCATACGAAAAA+GGG | + | chr4.1:2411666-2411685 | None:intergenic | 20.0% |
| !! | TATTTATTAGCATACGAAAA+AGG | + | chr4.1:2411667-2411686 | None:intergenic | 20.0% |
| !!! | AATTGATTTTTTGCTTTTGT+TGG | - | chr4.1:2412454-2412473 | MS.gene06132:CDS | 20.0% |
| !!! | TTTTGAACTAAAGTATTTGA+AGG | - | chr4.1:2411834-2411853 | MS.gene06132:CDS | 20.0% |
| ! | AAAACTATCATGTCACATAA+AGG | - | chr4.1:2412218-2412237 | MS.gene06132:CDS | 25.0% |
| ! | ATCATGAGATAAATGGTATT+TGG | + | chr4.1:2412717-2412736 | None:intergenic | 25.0% |
| ! | CAACAGTATTTAGTACAAAA+CGG | - | chr4.1:2412290-2412309 | MS.gene06132:intron | 25.0% |
| ! | GTTTGTAGAGGAAAATAAAT+TGG | - | chr4.1:2412972-2412991 | MS.gene06132:CDS | 25.0% |
| ! | TAATGGAGATGGAATTAATT+GGG | - | chr4.1:2412163-2412182 | MS.gene06132:CDS | 25.0% |
| ! | TACAGTTTAATAAAAACCTG+TGG | - | chr4.1:2412887-2412906 | MS.gene06132:CDS | 25.0% |
| ! | TTAATGGAGATGGAATTAAT+TGG | - | chr4.1:2412162-2412181 | MS.gene06132:CDS | 25.0% |
| ! | TTCGTATGCTAATAAATACA+TGG | - | chr4.1:2411669-2411688 | MS.gene06132:intron | 25.0% |
| ! | TTTGTTGATCTCAAGAATAA+TGG | - | chr4.1:2412114-2412133 | MS.gene06132:CDS | 25.0% |
| !! | ACTTTAGTTCAAAATCTACT+GGG | + | chr4.1:2411828-2411847 | None:intergenic | 25.0% |
| !! | TACTTTAGTTCAAAATCTAC+TGG | + | chr4.1:2411829-2411848 | None:intergenic | 25.0% |
| !! | TGCTTATATTTAAGATCAGA+GGG | + | chr4.1:2412664-2412683 | None:intergenic | 25.0% |
| !! | TTGCTTATATTTAAGATCAG+AGG | + | chr4.1:2412665-2412684 | None:intergenic | 25.0% |
| !!! | AAAGTACTAATTTTTCGACT+AGG | - | chr4.1:2412027-2412046 | MS.gene06132:CDS | 25.0% |
| !!! | ATAGTTTTATGTTCAACTCT+AGG | + | chr4.1:2412206-2412225 | None:intergenic | 25.0% |
| !!! | CATATTTAACAAGAGTACTT+TGG | - | chr4.1:2411211-2411230 | MS.gene06132:CDS | 25.0% |
| !!! | GAACAAACTTGTTGAAAATT+TGG | - | chr4.1:2411274-2411293 | MS.gene06132:intron | 25.0% |
| !!! | TAGTTTTATGTTCAACTCTA+GGG | + | chr4.1:2412205-2412224 | None:intergenic | 25.0% |
| !!! | TATTTCTTAGTGAAAGCATT+TGG | + | chr4.1:2411002-2411021 | None:intergenic | 25.0% |
| AAGTATTTGAAGGAAAAGCA+AGG | - | chr4.1:2411844-2411863 | MS.gene06132:CDS | 30.0% | |
| AATCAACTAGAATTACCTTG+CGG | + | chr4.1:2412072-2412091 | None:intergenic | 30.0% | |
| ACACATTATTCTATAGACCA+TGG | - | chr4.1:2411140-2411159 | MS.gene06132:CDS | 30.0% | |
| ACTTGGAATGTTAAACATTG+TGG | - | chr4.1:2411901-2411920 | MS.gene06132:intron | 30.0% | |
| CCAATTCTCAATTTCTTATG+TGG | + | chr4.1:2411356-2411375 | None:intergenic | 30.0% | |
| CCACATAAGAAATTGAGAAT+TGG | - | chr4.1:2411353-2411372 | MS.gene06132:intron | 30.0% | |
| CTTGGAATGTTAAACATTGT+GGG | - | chr4.1:2411902-2411921 | MS.gene06132:intron | 30.0% | |
| GCTTTCACTAAGAAATATAG+TGG | - | chr4.1:2411005-2411024 | MS.gene06132:CDS | 30.0% | |
| TAATTCATGTCATGCATTCT+TGG | - | chr4.1:2412761-2412780 | MS.gene06132:CDS | 30.0% | |
| TATGTAAACCTCAAAATGAG+AGG | + | chr4.1:2411195-2411214 | None:intergenic | 30.0% | |
| TGTAGAGGAAAATAAATTGG+AGG | - | chr4.1:2412975-2412994 | MS.gene06132:CDS | 30.0% | |
| ! | CGTTTTGTACTAAATACTGT+TGG | + | chr4.1:2412292-2412311 | None:intergenic | 30.0% |
| ! | CTCATGATTATGTTTGAAAC+TGG | - | chr4.1:2412729-2412748 | MS.gene06132:CDS | 30.0% |
| ! | TGAAAAAACCTCTCATTTTG+AGG | - | chr4.1:2411184-2411203 | MS.gene06132:CDS | 30.0% |
| ! | TTTGATGCTCATATTTTCAG+AGG | - | chr4.1:2413045-2413064 | MS.gene06132:CDS | 30.0% |
| !! | TTCACTTTGATAGTGAAATG+TGG | + | chr4.1:2412591-2412610 | None:intergenic | 30.0% |
| AGACTCCAGATGACAAAAAA+TGG | - | chr4.1:2411054-2411073 | MS.gene06132:CDS | 35.0% | |
| ATATTTGGATTCACAAGGGT+TGG | - | chr4.1:2411105-2411124 | MS.gene06132:CDS | 35.0% | |
| CAAAGTGAAATCAAGTCATG+CGG | - | chr4.1:2412602-2412621 | MS.gene06132:intron | 35.0% | |
| CCAAAAAGGATGGTGATATT+TGG | - | chr4.1:2411090-2411109 | MS.gene06132:CDS | 35.0% | |
| CCTAAACTTGTCCAAGTTAA+AGG | - | chr4.1:2411419-2411438 | MS.gene06132:intron | 35.0% | |
| CTCAATTTCTTATGTGGTTG+AGG | + | chr4.1:2411350-2411369 | None:intergenic | 35.0% | |
| CTCATTATCCATGACTTGAA+GGG | + | chr4.1:2411878-2411897 | None:intergenic | 35.0% | |
| CTTCACATTTAGGCATTTAG+TGG | + | chr4.1:2411565-2411584 | None:intergenic | 35.0% | |
| CTTGATCATGCTTCACATTT+AGG | + | chr4.1:2411575-2411594 | None:intergenic | 35.0% | |
| GACTCCAGATGACAAAAAAT+GGG | - | chr4.1:2411055-2411074 | MS.gene06132:CDS | 35.0% | |
| GAGGAAAATAAATTGGAGGA+TGG | - | chr4.1:2412979-2412998 | MS.gene06132:CDS | 35.0% | |
| GGTGATATTTGGATTCACAA+GGG | - | chr4.1:2411101-2411120 | MS.gene06132:CDS | 35.0% | |
| GTACATTTGACCAAAAAGGA+TGG | - | chr4.1:2411080-2411099 | MS.gene06132:CDS | 35.0% | |
| GTTCAATAGCAGCTATATAG+TGG | - | chr4.1:2412314-2412333 | MS.gene06132:intron | 35.0% | |
| TCATGGATAATGAGAGAACT+TGG | - | chr4.1:2411884-2411903 | MS.gene06132:CDS | 35.0% | |
| TCTCATTATCCATGACTTGA+AGG | + | chr4.1:2411879-2411898 | None:intergenic | 35.0% | |
| TGGTGATATTTGGATTCACA+AGG | - | chr4.1:2411100-2411119 | MS.gene06132:CDS | 35.0% | |
| TTCGAATCAGTTAATGGAGA+TGG | - | chr4.1:2412152-2412171 | MS.gene06132:CDS | 35.0% | |
| ! | AACATTGTCGTGACTTCTTT+TGG | - | chr4.1:2412250-2412269 | MS.gene06132:intron | 35.0% |
| ! | CCAAATATCACCATCCTTTT+TGG | + | chr4.1:2411093-2411112 | None:intergenic | 35.0% |
| ! | GGAAGTACATTTGACCAAAA+AGG | - | chr4.1:2411076-2411095 | MS.gene06132:CDS | 35.0% |
| !! | ATCTCCATTAACTGATTCGA+AGG | + | chr4.1:2412153-2412172 | None:intergenic | 35.0% |
| !! | CCTTTAACTTGGACAAGTTT+AGG | + | chr4.1:2411422-2411441 | None:intergenic | 35.0% |
| !! | GAAATGTGGATTTTTCAGAG+TGG | + | chr4.1:2412577-2412596 | None:intergenic | 35.0% |
| !! | TGTTTTTGAGCTCGTCAATA+AGG | - | chr4.1:2413011-2413030 | MS.gene06132:CDS | 35.0% |
| !!! | ACTTCCCATTTTTTGTCATC+TGG | + | chr4.1:2411062-2411081 | None:intergenic | 35.0% |
| AAACCTGTGGCATGTAAGAT+TGG | - | chr4.1:2412900-2412919 | MS.gene06132:CDS | 40.0% | |
| AGGTTGGAGTAAGTTTGTAG+AGG | - | chr4.1:2412960-2412979 | MS.gene06132:CDS | 40.0% | |
| AGTGTGTGTGTATTGCTTAC+CGG | + | chr4.1:2412639-2412658 | None:intergenic | 40.0% | |
| CAAAATCTACTGGGATGTAC+TGG | + | chr4.1:2411819-2411838 | None:intergenic | 40.0% | |
| CAGAGTGGATGTGAATTGAT+TGG | + | chr4.1:2412562-2412581 | None:intergenic | 40.0% | |
| CCGTGATTCGCAAAAAATGA+CGG | + | chr4.1:2412366-2412385 | None:intergenic | 40.0% | |
| CTGGAGTCTTGAGAAACATT+GGG | + | chr4.1:2411043-2411062 | None:intergenic | 40.0% | |
| CTTGTGACACAAGTACTTCT+CGG | + | chr4.1:2412854-2412873 | None:intergenic | 40.0% | |
| TCATGCGGATGTTTACAAAC+CGG | - | chr4.1:2412617-2412636 | MS.gene06132:intron | 40.0% | |
| TCGTCCTTCGAATCAGTTAA+TGG | - | chr4.1:2412146-2412165 | MS.gene06132:CDS | 40.0% | |
| TGCCATGTTCAATTTCTCAG+AGG | - | chr4.1:2411527-2411546 | MS.gene06132:CDS | 40.0% | |
| TGTGGGAGACATATTAGTAC+TGG | - | chr4.1:2411919-2411938 | MS.gene06132:intron | 40.0% | |
| TGTGTATACGCTGCAGTTAA+CGG | + | chr4.1:2412822-2412841 | None:intergenic | 40.0% | |
| ! | CTCCTCTGAGAAATTGAACA+TGG | + | chr4.1:2411532-2411551 | None:intergenic | 40.0% |
| ! | GATCTAGTCTTCTTGCATGT+AGG | + | chr4.1:2411308-2411327 | None:intergenic | 40.0% |
| ! | GGAGACATATTAGTACTGGA+TGG | - | chr4.1:2411923-2411942 | MS.gene06132:intron | 40.0% |
| ! | TCTGGAGTCTTGAGAAACAT+TGG | + | chr4.1:2411044-2411063 | None:intergenic | 40.0% |
| !!! | CCGTCATTTTTTGCGAATCA+CGG | - | chr4.1:2412363-2412382 | MS.gene06132:intron | 40.0% |
| ACTCAACTTGGTTGACGGTT+CGG | + | chr4.1:2412938-2412957 | None:intergenic | 45.0% | |
| ACTCCAACCTGTACTCAACT+TGG | + | chr4.1:2412950-2412969 | None:intergenic | 45.0% | |
| AGAATTACCTTGCGGTGGAA+GGG | + | chr4.1:2412064-2412083 | None:intergenic | 45.0% | |
| ATTGGCGCAAGTGAAGATGT+TGG | - | chr4.1:2411371-2411390 | MS.gene06132:intron | 45.0% | |
| CAACTAGAATTACCTTGCGG+TGG | + | chr4.1:2412069-2412088 | None:intergenic | 45.0% | |
| CCTGTACTCAACTTGGTTGA+CGG | + | chr4.1:2412943-2412962 | None:intergenic | 45.0% | |
| CGTTATCACCCTTCAAGTCA+TGG | - | chr4.1:2411867-2411886 | MS.gene06132:CDS | 45.0% | |
| GAAACATCAGCATGTGTCCA+TGG | + | chr4.1:2411160-2411179 | None:intergenic | 45.0% | |
| TAGAATTACCTTGCGGTGGA+AGG | + | chr4.1:2412065-2412084 | None:intergenic | 45.0% | |
| TTGGCATACCACAGGAAAGA+AGG | - | chr4.1:2412473-2412492 | MS.gene06132:CDS | 45.0% | |
| ! | CAACCAAGTTGAGTACAGGT+TGG | - | chr4.1:2412944-2412963 | MS.gene06132:CDS | 45.0% |
| ! | TGCTTTTGTTGGCATACCAC+AGG | - | chr4.1:2412465-2412484 | MS.gene06132:CDS | 45.0% |
| ! | TTGAGTTGCCTTCTTTCCTG+TGG | + | chr4.1:2412484-2412503 | None:intergenic | 45.0% |
| AAACATTCCCTTCCACCGCA+AGG | - | chr4.1:2412054-2412073 | MS.gene06132:CDS | 50.0% | |
| TCGCCAATCTTACATGCCAC+AGG | + | chr4.1:2412906-2412925 | None:intergenic | 50.0% | |
| ! | AACTTGGTTGACGGTTCGGA+TGG | + | chr4.1:2412934-2412953 | None:intergenic | 50.0% |
| ! | CCGTCAACCAAGTTGAGTAC+AGG | - | chr4.1:2412940-2412959 | MS.gene06132:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 2410993 | 2413077 | 2410993 | ID=MS.gene06132 |
| chr4.1 | mRNA | 2410993 | 2413077 | 2410993 | ID=MS.gene06132.t1;Parent=MS.gene06132 |
| chr4.1 | exon | 2412630 | 2413077 | 2412630 | ID=MS.gene06132.t1.exon1;Parent=MS.gene06132.t1 |
| chr4.1 | CDS | 2412630 | 2413077 | 2412630 | ID=cds.MS.gene06132.t1;Parent=MS.gene06132.t1 |
| chr4.1 | exon | 2412399 | 2412523 | 2412399 | ID=MS.gene06132.t1.exon2;Parent=MS.gene06132.t1 |
| chr4.1 | CDS | 2412399 | 2412523 | 2412399 | ID=cds.MS.gene06132.t1;Parent=MS.gene06132.t1 |
| chr4.1 | exon | 2411995 | 2412250 | 2411995 | ID=MS.gene06132.t1.exon3;Parent=MS.gene06132.t1 |
| chr4.1 | CDS | 2411995 | 2412250 | 2411995 | ID=cds.MS.gene06132.t1;Parent=MS.gene06132.t1 |
| chr4.1 | exon | 2411831 | 2411908 | 2411831 | ID=MS.gene06132.t1.exon4;Parent=MS.gene06132.t1 |
| chr4.1 | CDS | 2411831 | 2411908 | 2411831 | ID=cds.MS.gene06132.t1;Parent=MS.gene06132.t1 |
| chr4.1 | exon | 2411432 | 2411583 | 2411432 | ID=MS.gene06132.t1.exon5;Parent=MS.gene06132.t1 |
| chr4.1 | CDS | 2411432 | 2411583 | 2411432 | ID=cds.MS.gene06132.t1;Parent=MS.gene06132.t1 |
| chr4.1 | exon | 2410993 | 2411238 | 2410993 | ID=MS.gene06132.t1.exon6;Parent=MS.gene06132.t1 |
| chr4.1 | CDS | 2410993 | 2411238 | 2410993 | ID=cds.MS.gene06132.t1;Parent=MS.gene06132.t1 |
| Gene Sequence |
| Protein sequence |
