Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061416.t1 | XP_013454922.1 | 81.5 | 524 | 92 | 2 | 1 | 524 | 1 | 519 | 1.30E-156 | 563.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061416.t1 | Q7XJK8 | 28.7 | 272 | 161 | 7 | 6 | 266 | 2 | 251 | 5.1e-16 | 87.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061416.t1 | A0A072USW1 | 81.5 | 524 | 92 | 2 | 1 | 524 | 1 | 519 | 9.5e-157 | 563.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene061416.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061416.t1 | MTR_7g106510 | 83.969 | 524 | 63 | 4 | 1 | 524 | 1 | 503 | 0.0 | 828 |
| MS.gene061416.t1 | MTR_4g019670 | 83.206 | 524 | 83 | 2 | 1 | 524 | 1 | 519 | 0.0 | 818 |
| MS.gene061416.t1 | MTR_3g093900 | 44.502 | 582 | 253 | 11 | 1 | 524 | 1 | 570 | 1.83e-133 | 399 |
| MS.gene061416.t1 | MTR_8g467500 | 53.516 | 256 | 115 | 1 | 13 | 268 | 13 | 264 | 5.74e-70 | 226 |
| MS.gene061416.t1 | MTR_3g466980 | 33.939 | 165 | 105 | 2 | 1 | 164 | 1 | 162 | 1.76e-24 | 102 |
| MS.gene061416.t1 | MTR_5g075380 | 32.692 | 156 | 105 | 0 | 7 | 162 | 4 | 159 | 6.29e-23 | 95.9 |
| MS.gene061416.t1 | MTR_8g036130 | 38.168 | 131 | 79 | 1 | 4 | 132 | 1 | 131 | 2.57e-22 | 96.7 |
| MS.gene061416.t1 | MTR_3g466830 | 34.667 | 150 | 97 | 1 | 6 | 154 | 2 | 151 | 4.73e-22 | 93.2 |
| MS.gene061416.t1 | MTR_4g032620 | 36.066 | 122 | 78 | 0 | 6 | 127 | 3 | 124 | 1.23e-21 | 94.4 |
| MS.gene061416.t1 | MTR_3g466890 | 31.373 | 153 | 104 | 1 | 6 | 157 | 2 | 154 | 4.88e-20 | 87.4 |
| MS.gene061416.t1 | MTR_4g031910 | 38.415 | 164 | 88 | 3 | 1 | 160 | 1 | 155 | 1.42e-19 | 88.2 |
| MS.gene061416.t1 | MTR_2g016210 | 31.034 | 145 | 99 | 1 | 7 | 150 | 4 | 148 | 4.31e-19 | 87.0 |
| MS.gene061416.t1 | MTR_3g065100 | 39.316 | 117 | 71 | 0 | 6 | 122 | 3 | 119 | 2.51e-18 | 84.7 |
| MS.gene061416.t1 | MTR_1g090710 | 33.043 | 115 | 76 | 1 | 6 | 120 | 3 | 116 | 5.69e-18 | 81.6 |
| MS.gene061416.t1 | MTR_4g032260 | 40.625 | 96 | 57 | 0 | 37 | 132 | 34 | 129 | 1.86e-17 | 80.1 |
| MS.gene061416.t1 | MTR_2g035610 | 37.600 | 125 | 75 | 1 | 1 | 125 | 1 | 122 | 3.98e-17 | 78.2 |
| MS.gene061416.t1 | MTR_3g031240 | 29.060 | 117 | 83 | 0 | 6 | 122 | 3 | 119 | 5.42e-17 | 79.3 |
| MS.gene061416.t1 | MTR_4g032290 | 32.500 | 160 | 81 | 4 | 37 | 175 | 34 | 187 | 1.22e-16 | 79.7 |
| MS.gene061416.t1 | MTR_5g047580 | 35.000 | 120 | 74 | 2 | 1 | 120 | 1 | 116 | 3.73e-16 | 76.3 |
| MS.gene061416.t1 | MTR_4g028800 | 44.286 | 70 | 37 | 1 | 7 | 76 | 4 | 71 | 5.15e-16 | 73.2 |
| MS.gene061416.t1 | MTR_4g063790 | 28.387 | 155 | 103 | 3 | 6 | 155 | 3 | 154 | 6.36e-16 | 76.3 |
| MS.gene061416.t1 | MTR_3g031100 | 29.915 | 117 | 82 | 0 | 6 | 122 | 3 | 119 | 8.74e-16 | 77.4 |
| MS.gene061416.t1 | MTR_3g466900 | 32.258 | 124 | 83 | 1 | 35 | 157 | 2 | 125 | 9.88e-16 | 74.3 |
| MS.gene061416.t1 | MTR_1g090783 | 26.897 | 145 | 105 | 1 | 6 | 150 | 2 | 145 | 5.41e-15 | 72.8 |
| MS.gene061416.t1 | MTR_3g466930 | 33.065 | 124 | 82 | 1 | 35 | 157 | 2 | 125 | 9.45e-15 | 71.6 |
| MS.gene061416.t1 | MTR_1g077390 | 32.174 | 115 | 77 | 1 | 6 | 120 | 3 | 116 | 1.28e-14 | 72.0 |
| MS.gene061416.t1 | MTR_1g090697 | 29.333 | 150 | 102 | 2 | 1 | 150 | 1 | 146 | 1.95e-14 | 71.2 |
| MS.gene061416.t1 | MTR_4g028720 | 34.014 | 147 | 93 | 2 | 6 | 149 | 3 | 148 | 2.79e-13 | 68.2 |
| MS.gene061416.t1 | MTR_1g084950 | 36.975 | 119 | 70 | 2 | 6 | 120 | 3 | 120 | 5.48e-13 | 67.4 |
| MS.gene061416.t1 | MTR_7g011950 | 31.973 | 147 | 96 | 2 | 6 | 149 | 3 | 148 | 1.89e-12 | 65.9 |
| MS.gene061416.t1 | MTR_3g467080 | 25.000 | 156 | 113 | 2 | 6 | 157 | 3 | 158 | 2.26e-12 | 65.5 |
| MS.gene061416.t1 | MTR_1g077320 | 31.293 | 147 | 97 | 2 | 6 | 149 | 3 | 148 | 2.65e-12 | 65.5 |
| MS.gene061416.t1 | MTR_1g077300 | 32.800 | 125 | 79 | 2 | 6 | 126 | 3 | 126 | 6.15e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061416.t1 | AT2G40210 | 28.492 | 179 | 123 | 3 | 4 | 182 | 1 | 174 | 1.76e-20 | 93.6 |
| MS.gene061416.t1 | AT1G65300 | 27.612 | 268 | 165 | 6 | 6 | 264 | 2 | 249 | 2.21e-20 | 91.7 |
| MS.gene061416.t1 | AT3G05860 | 32.117 | 137 | 89 | 2 | 1 | 136 | 1 | 134 | 2.49e-17 | 82.0 |
| MS.gene061416.t1 | AT3G05860 | 32.117 | 137 | 89 | 2 | 1 | 136 | 1 | 134 | 2.60e-17 | 82.4 |
| MS.gene061416.t1 | AT3G05860 | 32.117 | 137 | 89 | 2 | 1 | 136 | 1 | 134 | 5.66e-17 | 80.1 |
| MS.gene061416.t1 | AT5G26650 | 32.456 | 114 | 77 | 0 | 7 | 120 | 2 | 115 | 1.64e-16 | 81.6 |
| MS.gene061416.t1 | AT5G27960 | 32.456 | 114 | 77 | 0 | 7 | 120 | 2 | 115 | 5.24e-16 | 79.7 |
| MS.gene061416.t1 | AT1G31630 | 33.043 | 115 | 76 | 1 | 6 | 120 | 2 | 115 | 1.21e-15 | 78.6 |
| MS.gene061416.t1 | AT5G06500 | 29.861 | 144 | 100 | 1 | 6 | 149 | 3 | 145 | 2.11e-15 | 76.3 |
| MS.gene061416.t1 | AT1G65330 | 33.628 | 113 | 75 | 0 | 8 | 120 | 4 | 116 | 2.43e-15 | 77.0 |
| MS.gene061416.t1 | AT2G15660 | 30.636 | 173 | 99 | 7 | 5 | 171 | 3 | 160 | 5.83e-15 | 75.1 |
| MS.gene061416.t1 | AT1G22590 | 28.440 | 109 | 75 | 1 | 6 | 114 | 3 | 108 | 6.86e-15 | 72.8 |
| MS.gene061416.t1 | AT1G31640 | 32.174 | 115 | 77 | 1 | 6 | 120 | 2 | 115 | 6.87e-15 | 77.4 |
| MS.gene061416.t1 | AT5G48670 | 36.752 | 117 | 74 | 0 | 6 | 122 | 3 | 119 | 7.49e-15 | 76.3 |
| MS.gene061416.t1 | AT2G28700 | 30.769 | 117 | 81 | 0 | 4 | 120 | 1 | 117 | 1.01e-14 | 75.9 |
| MS.gene061416.t1 | AT5G26630 | 32.212 | 208 | 121 | 6 | 1 | 199 | 1 | 197 | 1.08e-13 | 70.9 |
| MS.gene061416.t1 | AT5G27810 | 32.184 | 87 | 59 | 0 | 34 | 120 | 3 | 89 | 6.15e-11 | 60.5 |
Find 102 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTCCTCAAGAAAATTT+TGG | 0.166377 | 7.1:+75754142 | MS.gene061416:CDS |
| TTGCCTCCTCAAGGATATTT+TGG | 0.199048 | 7.1:+75753920 | MS.gene061416:CDS |
| AGTATTATTCTCAATCAATT+TGG | 0.203967 | 7.1:-75752955 | None:intergenic |
| TTGACTCAAACTTGGTTATT+AGG | 0.210241 | 7.1:-75753130 | None:intergenic |
| TTGGCTAATCAAGCCGATTT+TGG | 0.211096 | 7.1:+75753641 | MS.gene061416:CDS |
| AACAATATAGGTAGCCATAT+TGG | 0.237880 | 7.1:+75753857 | MS.gene061416:CDS |
| CAAAATCTTCAAAGTTAAAT+TGG | 0.246957 | 7.1:-75754168 | None:intergenic |
| GATTGTCACCTGCTCCATTT+TGG | 0.265823 | 7.1:-75753021 | None:intergenic |
| GATGGTGGTGGGGTACATTC+TGG | 0.289018 | 7.1:+75753467 | MS.gene061416:CDS |
| GAAAGGGTTGTTCACCAAAA+TGG | 0.296295 | 7.1:+75753007 | MS.gene061416:CDS |
| AGAAAATGAAGAGACTTTAA+TGG | 0.303503 | 7.1:+75753250 | MS.gene061416:CDS |
| CCAACAACCCTTGTTAGATT+TGG | 0.312296 | 7.1:+75753517 | MS.gene061416:CDS |
| GAGGCATGTGCAGTTGTGTT+TGG | 0.333133 | 7.1:+75753056 | MS.gene061416:CDS |
| CATGTGATTGTATCCCAATA+TGG | 0.337626 | 7.1:-75753871 | None:intergenic |
| TGTTTCTTCCTCGTGGAAAT+CGG | 0.350712 | 7.1:+75753822 | MS.gene061416:CDS |
| ATGGTGGTGGGGTACATTCT+GGG | 0.370699 | 7.1:+75753468 | MS.gene061416:CDS |
| TATTGAAACCACTGGTCATT+TGG | 0.376977 | 7.1:-75753553 | None:intergenic |
| CAAGTTTGAGTCAATGTCAT+TGG | 0.377334 | 7.1:+75753139 | MS.gene061416:CDS |
| ACTTTGTTGACAATAATTAC+AGG | 0.379077 | 7.1:+75754443 | MS.gene061416:CDS |
| GTTATCAAAATCGCCAAAAT+CGG | 0.379836 | 7.1:-75753654 | None:intergenic |
| GTTTCTTCCTCGTGGAAATC+GGG | 0.382019 | 7.1:+75753823 | MS.gene061416:CDS |
| AGGCATGTGCAGTTGTGTTT+GGG | 0.384585 | 7.1:+75753057 | MS.gene061416:CDS |
| GTGATACAAAACCATCAATA+TGG | 0.392745 | 7.1:+75753084 | MS.gene061416:CDS |
| TTTGAAGATCAAGAAAACTT+TGG | 0.393915 | 7.1:+75754052 | MS.gene061416:CDS |
| ACAATATAGGTAGCCATATT+GGG | 0.397274 | 7.1:+75753858 | MS.gene061416:CDS |
| TCTTCTAAAGTAAAAGATAT+TGG | 0.398866 | 7.1:-75753446 | None:intergenic |
| GTAGGAGATGGCCATATTGA+TGG | 0.410732 | 7.1:-75753095 | None:intergenic |
| GAAAATGAAGAGACTTTAAT+GGG | 0.430958 | 7.1:+75753251 | MS.gene061416:CDS |
| CATTCTGGGGTTAACATGTA+TGG | 0.436691 | 7.1:+75753482 | MS.gene061416:CDS |
| TTTGATAACAAATTTGATGA+TGG | 0.436904 | 7.1:+75753668 | MS.gene061416:CDS |
| GGCGGCAATATTAATGGGGA+TGG | 0.454010 | 7.1:+75754400 | MS.gene061416:CDS |
| CAATGACATTGACTCAAACT+TGG | 0.455302 | 7.1:-75753138 | None:intergenic |
| AGCAAATCAACATTCTCATT+CGG | 0.459688 | 7.1:-75754013 | None:intergenic |
| GGAGGTCAAAGCAACTTTCA+AGG | 0.462180 | 7.1:+75753941 | MS.gene061416:CDS |
| TGTGCAGTTGTGTTTGGGCC+AGG | 0.468633 | 7.1:+75753062 | MS.gene061416:CDS |
| ATATCAACACCACCATTGCT+TGG | 0.469029 | 7.1:-75754352 | None:intergenic |
| TACAGGAACAACTTCAACCC+TGG | 0.480219 | 7.1:+75754460 | MS.gene061416:CDS |
| GAAGATCAAGAAAACTTTGG+AGG | 0.480766 | 7.1:+75754055 | MS.gene061416:CDS |
| CCAAATCTAACAAGGGTTGT+TGG | 0.489048 | 7.1:-75753517 | None:intergenic |
| ATATTAATGGGGATGGGATG+CGG | 0.489274 | 7.1:+75754407 | MS.gene061416:CDS |
| GTTGGAGGAGGATTATTAAG+AGG | 0.490332 | 7.1:-75753416 | None:intergenic |
| GATGTCTAGGCATTTAGAAA+AGG | 0.494516 | 7.1:+75753385 | MS.gene061416:CDS |
| ATCAATATGGCCATCTCCTA+CGG | 0.501169 | 7.1:+75753097 | MS.gene061416:CDS |
| ATGGTTGTTATTGAAACCAC+TGG | 0.506528 | 7.1:-75753561 | None:intergenic |
| TTTACTTTAGAAGATGGTGG+TGG | 0.508226 | 7.1:+75753455 | MS.gene061416:CDS |
| ATAACAACCATGGAAGTAGC+AGG | 0.515374 | 7.1:+75753573 | MS.gene061416:CDS |
| GATATTGGTGCCAACGTTGG+AGG | 0.517309 | 7.1:-75753431 | None:intergenic |
| GTATCTCCCTGCTACTTCCA+TGG | 0.518256 | 7.1:-75753580 | None:intergenic |
| TGAGAATAATACTCAAAGAA+AGG | 0.521008 | 7.1:+75752965 | MS.gene061416:CDS |
| ATACCACCACATACAAATCA+TGG | 0.521732 | 7.1:+75754217 | MS.gene061416:CDS |
| GACAATCTTATGTGGAATTG+AGG | 0.522788 | 7.1:+75753037 | MS.gene061416:CDS |
| TTACTTTAGAAGATGGTGGT+GGG | 0.531437 | 7.1:+75753456 | MS.gene061416:CDS |
| CCTCCACTAACAGATCTTAG+TGG | 0.531606 | 7.1:+75753602 | MS.gene061416:CDS |
| ATTGGTGCCAACGTTGGAGG+AGG | 0.533160 | 7.1:-75753428 | None:intergenic |
| CTAACAGATCTTAGTGGTGG+TGG | 0.538898 | 7.1:+75753608 | MS.gene061416:CDS |
| GTTATAAGAAAAGATTGAAA+GGG | 0.540577 | 7.1:+75752991 | MS.gene061416:CDS |
| TACTTTAGAAGATGGTGGTG+GGG | 0.541086 | 7.1:+75753457 | MS.gene061416:CDS |
| TAACAAATTTGATGATGGCA+TGG | 0.546398 | 7.1:+75753673 | MS.gene061416:CDS |
| CATGATATGTTTCTTCCTCG+TGG | 0.547514 | 7.1:+75753815 | MS.gene061416:CDS |
| CGTTATAAGAAAAGATTGAA+AGG | 0.551031 | 7.1:+75752990 | MS.gene061416:CDS |
| GTTGTTCACCAAAATGGAGC+AGG | 0.556851 | 7.1:+75753013 | MS.gene061416:CDS |
| TCTTCAGCCACCGTAGGAGA+TGG | 0.560949 | 7.1:-75753107 | None:intergenic |
| CCACCACTAAGATCTGTTAG+TGG | 0.562274 | 7.1:-75753605 | None:intergenic |
| TGGTGGTGGTTGTGATAACT+TGG | 0.567708 | 7.1:+75753622 | MS.gene061416:CDS |
| ACATTACAGGTAGCAATACA+AGG | 0.567975 | 7.1:+75753972 | MS.gene061416:CDS |
| AGATCACTAGAAAGATGTCT+AGG | 0.570407 | 7.1:+75753372 | MS.gene061416:CDS |
| TTTCTCGACCAAATCTAACA+AGG | 0.571412 | 7.1:-75753525 | None:intergenic |
| AATATGGCCATCTCCTACGG+TGG | 0.571701 | 7.1:+75753100 | MS.gene061416:CDS |
| TAATAATCCTCCTCCAACGT+TGG | 0.577508 | 7.1:+75753421 | MS.gene061416:CDS |
| AAAGATATTGGTGCCAACGT+TGG | 0.577514 | 7.1:-75753434 | None:intergenic |
| GTAGGTGTGTTGCCTCCTCA+AGG | 0.582180 | 7.1:+75753911 | MS.gene061416:CDS |
| CCAACACCATGATTTGTATG+TGG | 0.583138 | 7.1:-75754223 | None:intergenic |
| GAGCAGGTGACAATCTTATG+TGG | 0.583955 | 7.1:+75753029 | MS.gene061416:CDS |
| GCGGCAATATTAATGGGGAT+GGG | 0.586840 | 7.1:+75754401 | MS.gene061416:CDS |
| TTTCTTCCTCGTGGAAATCG+GGG | 0.589231 | 7.1:+75753824 | MS.gene061416:CDS |
| AACAAATTTGATGATGGCAT+GGG | 0.594149 | 7.1:+75753674 | MS.gene061416:CDS |
| TTTATTCTGAAGGAAATCCA+GGG | 0.595152 | 7.1:-75754477 | None:intergenic |
| TTCTCGACCAAATCTAACAA+GGG | 0.605573 | 7.1:-75753524 | None:intergenic |
| CATGAAAATCCAAGCAATGG+TGG | 0.610991 | 7.1:+75754343 | MS.gene061416:CDS |
| CCACATGAAAATCCAAGCAA+TGG | 0.614633 | 7.1:+75754340 | MS.gene061416:CDS |
| TCACCTGAAAATTCTAGTGG+TGG | 0.615267 | 7.1:+75753704 | MS.gene061416:CDS |
| CCACATACAAATCATGGTGT+TGG | 0.616507 | 7.1:+75754223 | MS.gene061416:CDS |
| ATTAGGTCTTCAGCCACCGT+AGG | 0.620414 | 7.1:-75753113 | None:intergenic |
| TTCTCATTCGGATTTGCATG+TGG | 0.624293 | 7.1:-75754001 | None:intergenic |
| ACATCACATGAAAATCATAG+TGG | 0.625105 | 7.1:+75753785 | MS.gene061416:CDS |
| CCATCACCTGAAAATTCTAG+TGG | 0.626301 | 7.1:+75753701 | MS.gene061416:CDS |
| GAAAATCCTAGTGGTGGTGT+AGG | 0.627650 | 7.1:+75753893 | MS.gene061416:CDS |
| TTCTTCCTCGTGGAAATCGG+GGG | 0.632479 | 7.1:+75753825 | MS.gene061416:CDS |
| TGGTGGTGGGGTACATTCTG+GGG | 0.636574 | 7.1:+75753469 | MS.gene061416:CDS |
| ATGCATCAAATTGAAAACGA+AGG | 0.641960 | 7.1:+75753281 | MS.gene061416:CDS |
| AGTGGTTTCAATAACAACCA+TGG | 0.647385 | 7.1:+75753563 | MS.gene061416:CDS |
| AACACACCTACACCACCACT+AGG | 0.650603 | 7.1:-75753899 | None:intergenic |
| TAACAACCATGGAAGTAGCA+GGG | 0.655289 | 7.1:+75753574 | MS.gene061416:CDS |
| CCTCCAAAATATCCTTGAGG+AGG | 0.656666 | 7.1:-75753923 | None:intergenic |
| TGACCTCCAAAATATCCTTG+AGG | 0.660910 | 7.1:-75753926 | None:intergenic |
| AAAGTTGACCAAATGACCAG+TGG | 0.671225 | 7.1:+75753545 | MS.gene061416:CDS |
| CCACTAAGATCTGTTAGTGG+AGG | 0.673960 | 7.1:-75753602 | None:intergenic |
| TCACATGAAAATCCTAGTGG+TGG | 0.674534 | 7.1:+75753887 | MS.gene061416:CDS |
| ACAACATAGATAGCAGCATG+TGG | 0.675578 | 7.1:+75754086 | MS.gene061416:CDS |
| CAATCACATGAAAATCCTAG+TGG | 0.684612 | 7.1:+75753884 | MS.gene061416:CDS |
| CCACTAACAGATCTTAGTGG+TGG | 0.700550 | 7.1:+75753605 | MS.gene061416:CDS |
| ACACCATGATTTGTATGTGG+TGG | 0.720749 | 7.1:-75754220 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATTATTCTCAATCAATT+TGG | - | chr7.1:75752958-75752977 | None:intergenic | 20.0% |
| !! | CAAAATCTTCAAAGTTAAAT+TGG | - | chr7.1:75754171-75754190 | None:intergenic | 20.0% |
| !! | GTTATAAGAAAAGATTGAAA+GGG | + | chr7.1:75752991-75753010 | MS.gene061416:CDS | 20.0% |
| !!! | ACTTTTCATCAAAACAATTT+TGG | + | chr7.1:75754379-75754398 | MS.gene061416:CDS | 20.0% |
| !!! | ATATCTTTTACTTTAGAAGA+TGG | + | chr7.1:75753449-75753468 | MS.gene061416:CDS | 20.0% |
| !!! | GGGAATTTTATTAACAATAT+AGG | + | chr7.1:75753845-75753864 | MS.gene061416:CDS | 20.0% |
| !!! | TCTTCTAAAGTAAAAGATAT+TGG | - | chr7.1:75753449-75753468 | None:intergenic | 20.0% |
| !!! | TTTGAAGTTCAAAAAAACTT+TGG | + | chr7.1:75754277-75754296 | MS.gene061416:CDS | 20.0% |
| !!! | TTTGATAACAAATTTGATGA+TGG | + | chr7.1:75753668-75753687 | MS.gene061416:CDS | 20.0% |
| ! | ACTTTGTTGACAATAATTAC+AGG | + | chr7.1:75754443-75754462 | MS.gene061416:CDS | 25.0% |
| ! | AGAAAATGAAGAGACTTTAA+TGG | + | chr7.1:75753250-75753269 | MS.gene061416:CDS | 25.0% |
| ! | CGTTATAAGAAAAGATTGAA+AGG | + | chr7.1:75752990-75753009 | MS.gene061416:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+GGG | + | chr7.1:75753251-75753270 | MS.gene061416:CDS | 25.0% |
| ! | TATCCTTCAAAAAAGTCAAT+TGG | - | chr7.1:75753190-75753209 | None:intergenic | 25.0% |
| ! | TGAGAATAATACTCAAAGAA+AGG | + | chr7.1:75752965-75752984 | MS.gene061416:CDS | 25.0% |
| ! | TTTGAAGATCAAGAAAACTT+TGG | + | chr7.1:75754052-75754071 | MS.gene061416:CDS | 25.0% |
| !! | ATACAACATGCAAATTTTAG+TGG | + | chr7.1:75754109-75754128 | MS.gene061416:CDS | 25.0% |
| !! | TGATCTTCAAAATTTTCTTG+AGG | - | chr7.1:75754043-75754062 | None:intergenic | 25.0% |
| !! | TTTCATCAAAACAATTTTGG+CGG | + | chr7.1:75754382-75754401 | MS.gene061416:CDS | 25.0% |
| !!! | ATTGACTTTTTTGAAGGATA+AGG | + | chr7.1:75753190-75753209 | MS.gene061416:CDS | 25.0% |
| !!! | TTGACTTTTTTGAAGGATAA+GGG | + | chr7.1:75753191-75753210 | MS.gene061416:CDS | 25.0% |
| AACAATATAGGTAGCCATAT+TGG | + | chr7.1:75753857-75753876 | MS.gene061416:CDS | 30.0% | |
| ACAATATAGGTAGCCATATT+GGG | + | chr7.1:75753858-75753877 | MS.gene061416:CDS | 30.0% | |
| ACATCACATGAAAATCATAG+TGG | + | chr7.1:75753785-75753804 | MS.gene061416:CDS | 30.0% | |
| AGCAAATCAACATTCTCATT+CGG | - | chr7.1:75754016-75754035 | None:intergenic | 30.0% | |
| ATGCATCAAATTGAAAACGA+AGG | + | chr7.1:75753281-75753300 | MS.gene061416:CDS | 30.0% | |
| GAAGTTCAAAAAAACTTTGG+AGG | + | chr7.1:75754280-75754299 | MS.gene061416:CDS | 30.0% | |
| GTGATACAAAACCATCAATA+TGG | + | chr7.1:75753084-75753103 | MS.gene061416:CDS | 30.0% | |
| GTTATCAAAATCGCCAAAAT+CGG | - | chr7.1:75753657-75753676 | None:intergenic | 30.0% | |
| TTGACTCAAACTTGGTTATT+AGG | - | chr7.1:75753133-75753152 | None:intergenic | 30.0% | |
| ! | TCTTCAAAATTTTCTTGAGG+AGG | - | chr7.1:75754040-75754059 | None:intergenic | 30.0% |
| ! | TTGCTTCCTCAAGAAAATTT+TGG | + | chr7.1:75754142-75754161 | MS.gene061416:CDS | 30.0% |
| !! | AACAAATTTGATGATGGCAT+GGG | + | chr7.1:75753674-75753693 | MS.gene061416:CDS | 30.0% |
| !! | AATTTTGGCGGCAATATTAA+TGG | + | chr7.1:75754394-75754413 | MS.gene061416:CDS | 30.0% |
| !! | ATTTTGGCGGCAATATTAAT+GGG | + | chr7.1:75754395-75754414 | MS.gene061416:CDS | 30.0% |
| !! | GAAGATTTTGATAACAACAC+AGG | + | chr7.1:75754181-75754200 | MS.gene061416:CDS | 30.0% |
| !! | GCAAGATTTTGATAGTATCA+TGG | + | chr7.1:75753757-75753776 | MS.gene061416:CDS | 30.0% |
| !! | TAACAAATTTGATGATGGCA+TGG | + | chr7.1:75753673-75753692 | MS.gene061416:CDS | 30.0% |
| !! | TCTTTTACTTTAGAAGATGG+TGG | + | chr7.1:75753452-75753471 | MS.gene061416:CDS | 30.0% |
| !!! | TGACCAATTGACTTTTTTGA+AGG | + | chr7.1:75753184-75753203 | MS.gene061416:CDS | 30.0% |
| !!! | TTTCTTTTTCGATCTTTGCA+AGG | - | chr7.1:75753235-75753254 | None:intergenic | 30.0% |
| ACATTACAGGTAGCAATACA+AGG | + | chr7.1:75753972-75753991 | MS.gene061416:CDS | 35.0% | |
| AGATCACTAGAAAGATGTCT+AGG | + | chr7.1:75753372-75753391 | MS.gene061416:CDS | 35.0% | |
| AGTGGTTTCAATAACAACCA+TGG | + | chr7.1:75753563-75753582 | MS.gene061416:CDS | 35.0% | |
| ATACCACCACATACAAATCA+TGG | + | chr7.1:75754217-75754236 | MS.gene061416:CDS | 35.0% | |
| CAAGTTTGAGTCAATGTCAT+TGG | + | chr7.1:75753139-75753158 | MS.gene061416:CDS | 35.0% | |
| CAATCACATGAAAATCCTAG+TGG | + | chr7.1:75753884-75753903 | MS.gene061416:CDS | 35.0% | |
| CATGTGATTGTATCCCAATA+TGG | - | chr7.1:75753874-75753893 | None:intergenic | 35.0% | |
| GAAGATCAAGAAAACTTTGG+AGG | + | chr7.1:75754055-75754074 | MS.gene061416:CDS | 35.0% | |
| GACAATCTTATGTGGAATTG+AGG | + | chr7.1:75753037-75753056 | MS.gene061416:CDS | 35.0% | |
| GATGTCTAGGCATTTAGAAA+AGG | + | chr7.1:75753385-75753404 | MS.gene061416:CDS | 35.0% | |
| TATTGAAACCACTGGTCATT+TGG | - | chr7.1:75753556-75753575 | None:intergenic | 35.0% | |
| TTCTCGACCAAATCTAACAA+GGG | - | chr7.1:75753527-75753546 | None:intergenic | 35.0% | |
| TTTCTCGACCAAATCTAACA+AGG | - | chr7.1:75753528-75753547 | None:intergenic | 35.0% | |
| ! | AAACCACCACTAGAATTTTC+AGG | - | chr7.1:75753710-75753729 | None:intergenic | 35.0% |
| ! | ATGGTTGTTATTGAAACCAC+TGG | - | chr7.1:75753564-75753583 | None:intergenic | 35.0% |
| ! | TGGTCTCCAAAATTTTCTTG+AGG | - | chr7.1:75754151-75754170 | None:intergenic | 35.0% |
| ! | TTACTTTAGAAGATGGTGGT+GGG | + | chr7.1:75753456-75753475 | MS.gene061416:CDS | 35.0% |
| ! | TTTACTTTAGAAGATGGTGG+TGG | + | chr7.1:75753455-75753474 | MS.gene061416:CDS | 35.0% |
| ! | TTTTGGCGGCAATATTAATG+GGG | + | chr7.1:75754396-75754415 | MS.gene061416:CDS | 35.0% |
| !! | CAACATGCAAATTTTAGTGG+TGG | + | chr7.1:75754112-75754131 | MS.gene061416:CDS | 35.0% |
| !! | CAAGGTTTTGATGACATTAC+AGG | + | chr7.1:75753959-75753978 | MS.gene061416:CDS | 35.0% |
| !! | CAATGACATTGACTCAAACT+TGG | - | chr7.1:75753141-75753160 | None:intergenic | 35.0% |
| !!! | ATTGATGGTTTTGTATCACC+TGG | - | chr7.1:75753083-75753102 | None:intergenic | 35.0% |
| AAAGTTGACCAAATGACCAG+TGG | + | chr7.1:75753545-75753564 | MS.gene061416:CDS | 40.0% | |
| ACAACATAGATAGCAGCATG+TGG | + | chr7.1:75754086-75754105 | MS.gene061416:CDS | 40.0% | |
| ATAACAACCATGGAAGTAGC+AGG | + | chr7.1:75753573-75753592 | MS.gene061416:CDS | 40.0% | |
| ATATCAACACCACCATTGCT+TGG | - | chr7.1:75754355-75754374 | None:intergenic | 40.0% | |
| ATATTAATGGGGATGGGATG+CGG | + | chr7.1:75754407-75754426 | MS.gene061416:CDS | 40.0% | |
| ATCAATATGGCCATCTCCTA+CGG | + | chr7.1:75753097-75753116 | MS.gene061416:CDS | 40.0% | |
| CATGAAAATCCAAGCAATGG+TGG | + | chr7.1:75754343-75754362 | MS.gene061416:CDS | 40.0% | |
| CATGATATGTTTCTTCCTCG+TGG | + | chr7.1:75753815-75753834 | MS.gene061416:CDS | 40.0% | |
| CCAAATCTAACAAGGGTTGT+TGG | - | chr7.1:75753520-75753539 | None:intergenic | 40.0% | |
| CCAACAACCCTTGTTAGATT+TGG | + | chr7.1:75753517-75753536 | MS.gene061416:CDS | 40.0% | |
| CCACATACAAATCATGGTGT+TGG | + | chr7.1:75754223-75754242 | MS.gene061416:CDS | 40.0% | |
| CCACATGAAAATCCAAGCAA+TGG | + | chr7.1:75754340-75754359 | MS.gene061416:CDS | 40.0% | |
| CCATCACCTGAAAATTCTAG+TGG | + | chr7.1:75753701-75753720 | MS.gene061416:CDS | 40.0% | |
| GAAAGGGTTGTTCACCAAAA+TGG | + | chr7.1:75753007-75753026 | MS.gene061416:CDS | 40.0% | |
| GTTGGAGGAGGATTATTAAG+AGG | - | chr7.1:75753419-75753438 | None:intergenic | 40.0% | |
| TAACAACCATGGAAGTAGCA+GGG | + | chr7.1:75753574-75753593 | MS.gene061416:CDS | 40.0% | |
| TAATAATCCTCCTCCAACGT+TGG | + | chr7.1:75753421-75753440 | MS.gene061416:CDS | 40.0% | |
| TCACATGAAAATCCTAGTGG+TGG | + | chr7.1:75753887-75753906 | MS.gene061416:CDS | 40.0% | |
| TCACCTGAAAATTCTAGTGG+TGG | + | chr7.1:75753704-75753723 | MS.gene061416:CDS | 40.0% | |
| TGACCTCCAAAATATCCTTG+AGG | - | chr7.1:75753929-75753948 | None:intergenic | 40.0% | |
| TGTTTCTTCCTCGTGGAAAT+CGG | + | chr7.1:75753822-75753841 | MS.gene061416:CDS | 40.0% | |
| TTCTCATTCGGATTTGCATG+TGG | - | chr7.1:75754004-75754023 | None:intergenic | 40.0% | |
| ! | ACACCATGATTTGTATGTGG+TGG | - | chr7.1:75754223-75754242 | None:intergenic | 40.0% |
| ! | CCAACACCATGATTTGTATG+TGG | - | chr7.1:75754226-75754245 | None:intergenic | 40.0% |
| ! | CCATTGCTTGGATTTTCATG+TGG | - | chr7.1:75754343-75754362 | None:intergenic | 40.0% |
| ! | TACTTTAGAAGATGGTGGTG+GGG | + | chr7.1:75753457-75753476 | MS.gene061416:CDS | 40.0% |
| ! | TTGCCTCCTCAAGGATATTT+TGG | + | chr7.1:75753920-75753939 | MS.gene061416:CDS | 40.0% |
| ! | TTGCTTGGATTTTCATGTGG+AGG | - | chr7.1:75754340-75754359 | None:intergenic | 40.0% |
| !! | AAAGATATTGGTGCCAACGT+TGG | - | chr7.1:75753437-75753456 | None:intergenic | 40.0% |
| !! | CATTCTGGGGTTAACATGTA+TGG | + | chr7.1:75753482-75753501 | MS.gene061416:CDS | 40.0% |
| !! | TTGGCTAATCAAGCCGATTT+TGG | + | chr7.1:75753641-75753660 | MS.gene061416:CDS | 40.0% |
| !!! | CCACTAGAATTTTCAGGTGA+TGG | - | chr7.1:75753704-75753723 | None:intergenic | 40.0% |
| AGGCATGTGCAGTTGTGTTT+GGG | + | chr7.1:75753057-75753076 | MS.gene061416:CDS | 45.0% | |
| CCACCACTAAGATCTGTTAG+TGG | - | chr7.1:75753608-75753627 | None:intergenic | 45.0% | |
| CCACTAACAGATCTTAGTGG+TGG | + | chr7.1:75753605-75753624 | MS.gene061416:CDS | 45.0% | |
| CCACTAAGATCTGTTAGTGG+AGG | - | chr7.1:75753605-75753624 | None:intergenic | 45.0% | |
| CCTCCAAAATATCCTTGAGG+AGG | - | chr7.1:75753926-75753945 | None:intergenic | 45.0% | |
| CCTCCACTAACAGATCTTAG+TGG | + | chr7.1:75753602-75753621 | MS.gene061416:CDS | 45.0% | |
| CTAACAGATCTTAGTGGTGG+TGG | + | chr7.1:75753608-75753627 | MS.gene061416:CDS | 45.0% | |
| GAGCAGGTGACAATCTTATG+TGG | + | chr7.1:75753029-75753048 | MS.gene061416:CDS | 45.0% | |
| GCGGCAATATTAATGGGGAT+GGG | + | chr7.1:75754401-75754420 | MS.gene061416:CDS | 45.0% | |
| GGAGGTCAAAGCAACTTTCA+AGG | + | chr7.1:75753941-75753960 | MS.gene061416:CDS | 45.0% | |
| GTAGGAGATGGCCATATTGA+TGG | - | chr7.1:75753098-75753117 | None:intergenic | 45.0% | |
| GTTGTTCACCAAAATGGAGC+AGG | + | chr7.1:75753013-75753032 | MS.gene061416:CDS | 45.0% | |
| GTTTCTTCCTCGTGGAAATC+GGG | + | chr7.1:75753823-75753842 | MS.gene061416:CDS | 45.0% | |
| TACAGGAACAACTTCAACCC+TGG | + | chr7.1:75754460-75754479 | MS.gene061416:CDS | 45.0% | |
| TTTCTTCCTCGTGGAAATCG+GGG | + | chr7.1:75753824-75753843 | MS.gene061416:CDS | 45.0% | |
| ! | GAAAATCCTAGTGGTGGTGT+AGG | + | chr7.1:75753893-75753912 | MS.gene061416:CDS | 45.0% |
| ! | GATTGTCACCTGCTCCATTT+TGG | - | chr7.1:75753024-75753043 | None:intergenic | 45.0% |
| !! | CCTCCTCAAGGATATTTTGG+AGG | + | chr7.1:75753923-75753942 | MS.gene061416:CDS | 45.0% |
| !! | TGGTGGTGGTTGTGATAACT+TGG | + | chr7.1:75753622-75753641 | MS.gene061416:CDS | 45.0% |
| AAATTCCCCCGATTTCCACG+AGG | - | chr7.1:75753833-75753852 | None:intergenic | 50.0% | |
| AACACACCTACACCACCACT+AGG | - | chr7.1:75753902-75753921 | None:intergenic | 50.0% | |
| AATATGGCCATCTCCTACGG+TGG | + | chr7.1:75753100-75753119 | MS.gene061416:CDS | 50.0% | |
| ATTAGGTCTTCAGCCACCGT+AGG | - | chr7.1:75753116-75753135 | None:intergenic | 50.0% | |
| GAGGCATGTGCAGTTGTGTT+TGG | + | chr7.1:75753056-75753075 | MS.gene061416:CDS | 50.0% | |
| GGCGGCAATATTAATGGGGA+TGG | + | chr7.1:75754400-75754419 | MS.gene061416:CDS | 50.0% | |
| TTCTTCCTCGTGGAAATCGG+GGG | + | chr7.1:75753825-75753844 | MS.gene061416:CDS | 50.0% | |
| ! | GTATCTCCCTGCTACTTCCA+TGG | - | chr7.1:75753583-75753602 | None:intergenic | 50.0% |
| !! | ATGGTGGTGGGGTACATTCT+GGG | + | chr7.1:75753468-75753487 | MS.gene061416:CDS | 50.0% |
| !! | GATATTGGTGCCAACGTTGG+AGG | - | chr7.1:75753434-75753453 | None:intergenic | 50.0% |
| GTAGGTGTGTTGCCTCCTCA+AGG | + | chr7.1:75753911-75753930 | MS.gene061416:CDS | 55.0% | |
| TCTTCAGCCACCGTAGGAGA+TGG | - | chr7.1:75753110-75753129 | None:intergenic | 55.0% | |
| TGTGCAGTTGTGTTTGGGCC+AGG | + | chr7.1:75753062-75753081 | MS.gene061416:CDS | 55.0% | |
| !! | ATTGGTGCCAACGTTGGAGG+AGG | - | chr7.1:75753431-75753450 | None:intergenic | 55.0% |
| !! | GATGGTGGTGGGGTACATTC+TGG | + | chr7.1:75753467-75753486 | MS.gene061416:CDS | 55.0% |
| !! | TGGTGGTGGGGTACATTCTG+GGG | + | chr7.1:75753469-75753488 | MS.gene061416:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 75752924 | 75754498 | 75752924 | ID=MS.gene061416 |
| chr7.1 | mRNA | 75752924 | 75754498 | 75752924 | ID=MS.gene061416.t1;Parent=MS.gene061416 |
| chr7.1 | exon | 75752924 | 75754498 | 75752924 | ID=MS.gene061416.t1.exon1;Parent=MS.gene061416.t1 |
| chr7.1 | CDS | 75752924 | 75754498 | 75752924 | ID=cds.MS.gene061416.t1;Parent=MS.gene061416.t1 |
| Gene Sequence |
| Protein sequence |
