Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061417.t1 | XP_013454922.1 | 81.1 | 524 | 94 | 2 | 1 | 524 | 1 | 519 | 2.60E-157 | 565.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061417.t1 | Q7XJK8 | 29.8 | 258 | 161 | 7 | 6 | 252 | 2 | 250 | 8.7e-16 | 86.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061417.t1 | A0A072USW1 | 81.1 | 524 | 94 | 2 | 1 | 524 | 1 | 519 | 1.9e-157 | 565.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene061417.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061417.t1 | MTR_7g106510 | 83.779 | 524 | 64 | 4 | 1 | 524 | 1 | 503 | 0.0 | 832 |
| MS.gene061417.t1 | MTR_4g019670 | 83.397 | 524 | 82 | 2 | 1 | 524 | 1 | 519 | 0.0 | 827 |
| MS.gene061417.t1 | MTR_3g093900 | 44.330 | 582 | 254 | 12 | 1 | 524 | 1 | 570 | 5.75e-133 | 398 |
| MS.gene061417.t1 | MTR_8g467500 | 53.516 | 256 | 115 | 1 | 13 | 268 | 13 | 264 | 1.29e-70 | 228 |
| MS.gene061417.t1 | MTR_3g466980 | 33.939 | 165 | 105 | 2 | 1 | 164 | 1 | 162 | 6.81e-25 | 103 |
| MS.gene061417.t1 | MTR_5g075380 | 31.410 | 156 | 107 | 0 | 7 | 162 | 4 | 159 | 6.32e-22 | 92.8 |
| MS.gene061417.t1 | MTR_8g036130 | 37.405 | 131 | 80 | 1 | 4 | 132 | 1 | 131 | 1.27e-21 | 94.4 |
| MS.gene061417.t1 | MTR_3g466830 | 34.000 | 150 | 98 | 1 | 6 | 154 | 2 | 151 | 3.11e-21 | 90.9 |
| MS.gene061417.t1 | MTR_4g032620 | 34.426 | 122 | 80 | 0 | 6 | 127 | 3 | 124 | 1.32e-20 | 91.3 |
| MS.gene061417.t1 | MTR_3g466890 | 30.719 | 153 | 105 | 1 | 6 | 157 | 2 | 154 | 3.09e-19 | 85.1 |
| MS.gene061417.t1 | MTR_4g031910 | 37.195 | 164 | 90 | 3 | 1 | 160 | 1 | 155 | 1.01e-18 | 85.9 |
| MS.gene061417.t1 | MTR_2g016210 | 29.655 | 145 | 101 | 1 | 7 | 150 | 4 | 148 | 3.57e-18 | 84.3 |
| MS.gene061417.t1 | MTR_3g065100 | 36.975 | 119 | 75 | 0 | 4 | 122 | 1 | 119 | 1.12e-17 | 82.8 |
| MS.gene061417.t1 | MTR_1g090710 | 30.769 | 117 | 80 | 1 | 4 | 120 | 1 | 116 | 3.87e-17 | 79.3 |
| MS.gene061417.t1 | MTR_4g032260 | 39.583 | 96 | 58 | 0 | 37 | 132 | 34 | 129 | 5.40e-17 | 79.0 |
| MS.gene061417.t1 | MTR_5g047580 | 33.333 | 117 | 77 | 1 | 4 | 120 | 1 | 116 | 2.35e-16 | 77.0 |
| MS.gene061417.t1 | MTR_4g032290 | 31.875 | 160 | 82 | 4 | 37 | 175 | 34 | 187 | 2.91e-16 | 78.6 |
| MS.gene061417.t1 | MTR_3g031240 | 28.205 | 117 | 84 | 0 | 6 | 122 | 3 | 119 | 3.00e-16 | 77.4 |
| MS.gene061417.t1 | MTR_2g035610 | 34.426 | 122 | 80 | 0 | 4 | 125 | 1 | 122 | 4.06e-16 | 75.1 |
| MS.gene061417.t1 | MTR_4g028800 | 44.286 | 70 | 37 | 1 | 7 | 76 | 4 | 71 | 1.28e-15 | 72.0 |
| MS.gene061417.t1 | MTR_4g063790 | 27.389 | 157 | 106 | 3 | 4 | 155 | 1 | 154 | 2.59e-15 | 74.3 |
| MS.gene061417.t1 | MTR_3g466900 | 31.452 | 124 | 84 | 1 | 35 | 157 | 2 | 125 | 2.81e-15 | 73.2 |
| MS.gene061417.t1 | MTR_1g077390 | 33.043 | 115 | 76 | 1 | 6 | 120 | 3 | 116 | 4.11e-15 | 73.2 |
| MS.gene061417.t1 | MTR_1g090783 | 26.897 | 145 | 105 | 1 | 6 | 150 | 2 | 145 | 4.77e-15 | 73.2 |
| MS.gene061417.t1 | MTR_3g031100 | 28.205 | 117 | 84 | 0 | 6 | 122 | 3 | 119 | 9.79e-15 | 74.3 |
| MS.gene061417.t1 | MTR_1g090697 | 27.891 | 147 | 105 | 1 | 4 | 150 | 1 | 146 | 1.34e-14 | 72.0 |
| MS.gene061417.t1 | MTR_3g466930 | 32.258 | 124 | 83 | 1 | 35 | 157 | 2 | 125 | 2.83e-14 | 70.1 |
| MS.gene061417.t1 | MTR_4g028720 | 33.557 | 149 | 95 | 2 | 4 | 149 | 1 | 148 | 2.61e-13 | 68.2 |
| MS.gene061417.t1 | MTR_1g084950 | 36.364 | 121 | 72 | 2 | 4 | 120 | 1 | 120 | 4.65e-13 | 67.4 |
| MS.gene061417.t1 | MTR_1g077320 | 30.872 | 149 | 99 | 2 | 4 | 149 | 1 | 148 | 1.62e-12 | 65.9 |
| MS.gene061417.t1 | MTR_7g011950 | 31.544 | 149 | 98 | 2 | 4 | 149 | 1 | 148 | 1.70e-12 | 65.9 |
| MS.gene061417.t1 | MTR_1g077300 | 33.600 | 125 | 78 | 2 | 6 | 126 | 3 | 126 | 1.88e-12 | 65.9 |
| MS.gene061417.t1 | MTR_3g467080 | 24.051 | 158 | 116 | 2 | 4 | 157 | 1 | 158 | 8.94e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061417.t1 | AT2G40210 | 27.933 | 179 | 124 | 3 | 4 | 182 | 1 | 174 | 5.78e-20 | 92.0 |
| MS.gene061417.t1 | AT1G65300 | 36.522 | 115 | 73 | 0 | 6 | 120 | 2 | 116 | 7.60e-20 | 90.1 |
| MS.gene061417.t1 | AT3G05860 | 30.657 | 137 | 91 | 2 | 1 | 136 | 1 | 134 | 2.05e-16 | 79.3 |
| MS.gene061417.t1 | AT3G05860 | 30.657 | 137 | 91 | 2 | 1 | 136 | 1 | 134 | 2.30e-16 | 79.7 |
| MS.gene061417.t1 | AT5G26650 | 31.579 | 114 | 78 | 0 | 7 | 120 | 2 | 115 | 5.44e-16 | 80.1 |
| MS.gene061417.t1 | AT3G05860 | 30.657 | 137 | 91 | 2 | 1 | 136 | 1 | 134 | 5.51e-16 | 77.4 |
| MS.gene061417.t1 | AT5G27960 | 31.579 | 114 | 78 | 0 | 7 | 120 | 2 | 115 | 1.82e-15 | 77.8 |
| MS.gene061417.t1 | AT1G31630 | 32.174 | 115 | 77 | 1 | 6 | 120 | 2 | 115 | 4.45e-15 | 77.0 |
| MS.gene061417.t1 | AT1G65330 | 32.743 | 113 | 76 | 0 | 8 | 120 | 4 | 116 | 9.14e-15 | 75.1 |
| MS.gene061417.t1 | AT5G06500 | 28.082 | 146 | 104 | 1 | 4 | 149 | 1 | 145 | 1.29e-14 | 73.9 |
| MS.gene061417.t1 | AT2G28700 | 29.915 | 117 | 82 | 0 | 4 | 120 | 1 | 117 | 2.37e-14 | 74.7 |
| MS.gene061417.t1 | AT1G22590 | 28.440 | 109 | 75 | 1 | 6 | 114 | 3 | 108 | 3.02e-14 | 71.2 |
| MS.gene061417.t1 | AT1G31640 | 31.356 | 118 | 77 | 2 | 3 | 120 | 2 | 115 | 3.43e-14 | 75.5 |
| MS.gene061417.t1 | AT5G48670 | 34.454 | 119 | 78 | 0 | 4 | 122 | 1 | 119 | 3.81e-14 | 73.9 |
| MS.gene061417.t1 | AT2G15660 | 31.852 | 135 | 85 | 5 | 40 | 171 | 30 | 160 | 4.32e-14 | 72.8 |
| MS.gene061417.t1 | AT5G26630 | 32.212 | 208 | 121 | 6 | 1 | 199 | 1 | 197 | 9.18e-14 | 71.2 |
Find 105 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTCCTCAAGAAAATTT+TGG | 0.166377 | 7.1:+75702073 | MS.gene061417:CDS |
| TTGACTCATACTTGGTTATT+AGG | 0.193064 | 7.1:-75701061 | None:intergenic |
| TTGCCTCCTCAAGGATATTT+TGG | 0.199048 | 7.1:+75701851 | MS.gene061417:CDS |
| AGTATTATTCTCAATCAATT+TGG | 0.203967 | 7.1:-75700886 | None:intergenic |
| AACTTTGGCGGCAATATTAA+TGG | 0.210065 | 7.1:+75702325 | MS.gene061417:CDS |
| TTGGCTAATCAAGCCGATTT+TGG | 0.211096 | 7.1:+75701572 | MS.gene061417:CDS |
| AACAATATAGGTAGCAATAT+TGG | 0.211965 | 7.1:+75701788 | MS.gene061417:CDS |
| CAAAATCTTCAAAGTTAAAT+TGG | 0.246957 | 7.1:-75702099 | None:intergenic |
| GATTGTCACCTGCTCCATTT+TGG | 0.265823 | 7.1:-75700952 | None:intergenic |
| GAAAGGGTTGTTCACCAAAA+TGG | 0.296295 | 7.1:+75700938 | MS.gene061417:CDS |
| GATGGTGATGGGGTACATTC+TGG | 0.296453 | 7.1:+75701398 | MS.gene061417:CDS |
| AGAAAATGAAGAGACTTTAA+TGG | 0.303503 | 7.1:+75701181 | MS.gene061417:CDS |
| CCAACAACCCTTGTTAGATT+TGG | 0.312296 | 7.1:+75701448 | MS.gene061417:CDS |
| GAGGCATGTGCGGTTGTGTT+TGG | 0.344211 | 7.1:+75700987 | MS.gene061417:CDS |
| TGTTTCTTCCTCGTGGAAAT+CGG | 0.350712 | 7.1:+75701753 | MS.gene061417:CDS |
| GTTTCTTCCTCGTGGAAATC+GGG | 0.362437 | 7.1:+75701754 | MS.gene061417:CDS |
| ACTTTGTTGACAATAATTAC+AGG | 0.379077 | 7.1:+75702374 | MS.gene061417:CDS |
| ACAATATAGGTAGCAATATT+GGG | 0.381596 | 7.1:+75701789 | MS.gene061417:CDS |
| AGGCATGTGCGGTTGTGTTT+GGG | 0.389221 | 7.1:+75700988 | MS.gene061417:CDS |
| GTGATACAAAACCATCAATA+TGG | 0.392745 | 7.1:+75701015 | MS.gene061417:CDS |
| TTTGAAGATCAAGAAAACTT+TGG | 0.393915 | 7.1:+75701983 | MS.gene061417:CDS |
| GTTATCAAAATCGCCAAAAT+CGG | 0.397560 | 7.1:-75701585 | None:intergenic |
| TCTTCTAAAGTAAAAGATAT+TGG | 0.398866 | 7.1:-75701377 | None:intergenic |
| GTAGGAGATGGCCATATTGA+TGG | 0.410732 | 7.1:-75701026 | None:intergenic |
| CAATGACATTGACTCATACT+TGG | 0.420310 | 7.1:-75701069 | None:intergenic |
| GAAAATGAAGAGACTTTAAT+GGG | 0.430958 | 7.1:+75701182 | MS.gene061417:CDS |
| CAAGTATGAGTCAATGTCAT+TGG | 0.431413 | 7.1:+75701070 | MS.gene061417:CDS |
| ATGGTGATGGGGTACATTCT+GGG | 0.432610 | 7.1:+75701399 | MS.gene061417:CDS |
| CATTCTGGGGTTAACATGTA+TGG | 0.436691 | 7.1:+75701413 | MS.gene061417:CDS |
| TATCCTTCAGAAAAGTCAAT+TGG | 0.438008 | 7.1:-75701118 | None:intergenic |
| GAGAATAATACTCAAAGAAA+GGG | 0.439242 | 7.1:+75700897 | MS.gene061417:CDS |
| GGCGGCAATATTAATGGAGA+TGG | 0.442349 | 7.1:+75702331 | MS.gene061417:CDS |
| TGTGCGGTTGTGTTTGGGCC+AGG | 0.446264 | 7.1:+75700993 | MS.gene061417:CDS |
| ATATGAACACCACCATTGCT+TGG | 0.455645 | 7.1:-75702283 | None:intergenic |
| GGAGGTCAAAGCAACTTTCA+AGG | 0.462180 | 7.1:+75701872 | MS.gene061417:CDS |
| TACAGGAACAACTTCAACCC+TGG | 0.480219 | 7.1:+75702391 | MS.gene061417:CDS |
| GAAGATCAAGAAAACTTTGG+AGG | 0.480766 | 7.1:+75701986 | MS.gene061417:CDS |
| TGAGAATAATACTCAAAGAA+AGG | 0.482301 | 7.1:+75700896 | MS.gene061417:CDS |
| TTTCATCAAAACAACTTTGG+CGG | 0.485753 | 7.1:+75702313 | MS.gene061417:CDS |
| CCAAATCTAACAAGGGTTGT+TGG | 0.489048 | 7.1:-75701448 | None:intergenic |
| GTTGGAGGAGGATTATTAAG+AGG | 0.490332 | 7.1:-75701347 | None:intergenic |
| GATGTCTAGGCATTTAGAAA+AGG | 0.494516 | 7.1:+75701316 | MS.gene061417:CDS |
| ATCAATATGGCCATCTCCTA+CGG | 0.501169 | 7.1:+75701028 | MS.gene061417:CDS |
| TTTACTTTAGAAGATGGTGA+TGG | 0.506036 | 7.1:+75701386 | MS.gene061417:CDS |
| ATGGTTGTTATTGAAACCAC+TGG | 0.506528 | 7.1:-75701492 | None:intergenic |
| TTACTTTAGAAGATGGTGAT+GGG | 0.515841 | 7.1:+75701387 | MS.gene061417:CDS |
| GATATTGGTGCCAACGTTGG+AGG | 0.517309 | 7.1:-75701362 | None:intergenic |
| ATACCACCACATACAAATCA+TGG | 0.521732 | 7.1:+75702148 | MS.gene061417:CDS |
| GACAATCTTATGTGGAATTG+AGG | 0.522788 | 7.1:+75700968 | MS.gene061417:CDS |
| GTATCTCCATGCTACTTCCA+TGG | 0.531474 | 7.1:-75701511 | None:intergenic |
| CCTCCACTAACAGATCTTAG+TGG | 0.531606 | 7.1:+75701533 | MS.gene061417:CDS |
| ATTGGTGCCAACGTTGGAGG+AGG | 0.533160 | 7.1:-75701359 | None:intergenic |
| CGTTATAAGAAAAGATTGAA+AGG | 0.538074 | 7.1:+75700921 | MS.gene061417:CDS |
| CTAACAGATCTTAGTGGTGG+TGG | 0.538898 | 7.1:+75701539 | MS.gene061417:CDS |
| AACAACTTTGATGGTGGCAT+GGG | 0.547295 | 7.1:+75701605 | MS.gene061417:CDS |
| CATGATATGTTTCTTCCTCG+TGG | 0.547514 | 7.1:+75701746 | MS.gene061417:CDS |
| ATATTAATGGAGATGGGATG+CGG | 0.549478 | 7.1:+75702338 | MS.gene061417:CDS |
| TTTCTTCCTCGTGGAAATCG+GGG | 0.553511 | 7.1:+75701755 | MS.gene061417:CDS |
| GCGGCAATATTAATGGAGAT+GGG | 0.556348 | 7.1:+75702332 | MS.gene061417:CDS |
| GTTGTTCACCAAAATGGAGC+AGG | 0.556851 | 7.1:+75700944 | MS.gene061417:CDS |
| TTTGATAACAACTTTGATGG+TGG | 0.557716 | 7.1:+75701599 | MS.gene061417:CDS |
| TCTTCAGCCACCGTAGGAGA+TGG | 0.560949 | 7.1:-75701038 | None:intergenic |
| CCACCACTAAGATCTGTTAG+TGG | 0.562274 | 7.1:-75701536 | None:intergenic |
| GTTATAAGAAAAGATTGAAA+GGG | 0.563317 | 7.1:+75700922 | MS.gene061417:CDS |
| TGGTGGTGGTTGTGATAACT+TGG | 0.567708 | 7.1:+75701553 | MS.gene061417:CDS |
| ACATTACAGGTAGCAATACA+AGG | 0.567975 | 7.1:+75701903 | MS.gene061417:CDS |
| AGATCACTAGAAAGATGTCT+AGG | 0.570407 | 7.1:+75701303 | MS.gene061417:CDS |
| TTTCTCGACCAAATCTAACA+AGG | 0.571412 | 7.1:-75701456 | None:intergenic |
| AATATGGCCATCTCCTACGG+TGG | 0.571701 | 7.1:+75701031 | MS.gene061417:CDS |
| TAATAATCCTCCTCCAACGT+TGG | 0.577508 | 7.1:+75701352 | MS.gene061417:CDS |
| AAAGATATTGGTGCCAACGT+TGG | 0.577514 | 7.1:-75701365 | None:intergenic |
| GTAGGTGTGTTGCCTCCTCA+AGG | 0.582180 | 7.1:+75701842 | MS.gene061417:CDS |
| TACTTTAGAAGATGGTGATG+GGG | 0.582286 | 7.1:+75701388 | MS.gene061417:CDS |
| CCAACACCATGATTTGTATG+TGG | 0.583138 | 7.1:-75702154 | None:intergenic |
| GAGCAGGTGACAATCTTATG+TGG | 0.583955 | 7.1:+75700960 | MS.gene061417:CDS |
| TAACAACTTTGATGGTGGCA+TGG | 0.586911 | 7.1:+75701604 | MS.gene061417:CDS |
| TGGTGATGGGGTACATTCTG+GGG | 0.588241 | 7.1:+75701400 | MS.gene061417:CDS |
| TAACAACCATGGAAGTAGCA+TGG | 0.590557 | 7.1:+75701505 | MS.gene061417:CDS |
| TTTATTCTGAAGGAAATCCA+GGG | 0.595152 | 7.1:-75702408 | None:intergenic |
| TTCTCGACCAAATCTAACAA+GGG | 0.605573 | 7.1:-75701455 | None:intergenic |
| CATGAAAATCCAAGCAATGG+TGG | 0.610991 | 7.1:+75702274 | MS.gene061417:CDS |
| CCACATGAAAATCCAAGCAA+TGG | 0.614633 | 7.1:+75702271 | MS.gene061417:CDS |
| TCACCTGAAAATTCTAGTGG+TGG | 0.615267 | 7.1:+75701635 | MS.gene061417:CDS |
| CCACATACAAATCATGGTGT+TGG | 0.616507 | 7.1:+75702154 | MS.gene061417:CDS |
| TTCTTCCTCGTGGAAATCGG+GGG | 0.619288 | 7.1:+75701756 | MS.gene061417:CDS |
| ATTAGGTCTTCAGCCACCGT+AGG | 0.620414 | 7.1:-75701044 | None:intergenic |
| CCATCACCTGAAAATTCTAG+TGG | 0.626301 | 7.1:+75701632 | MS.gene061417:CDS |
| AGAATAATACTCAAAGAAAG+GGG | 0.627406 | 7.1:+75700898 | MS.gene061417:CDS |
| GAAAATCCTAGTGGTGGTGT+AGG | 0.627650 | 7.1:+75701824 | MS.gene061417:CDS |
| TCATCACATGAAAATCATAG+TGG | 0.635133 | 7.1:+75701716 | MS.gene061417:CDS |
| ATGCATCAAATTGAAAACGA+AGG | 0.641960 | 7.1:+75701212 | MS.gene061417:CDS |
| AAAGTTGATCAAATGACCAG+TGG | 0.646800 | 7.1:+75701476 | MS.gene061417:CDS |
| AGTGGTTTCAATAACAACCA+TGG | 0.647385 | 7.1:+75701494 | MS.gene061417:CDS |
| TTCTCATTCAGATTTGCATG+TGG | 0.650408 | 7.1:-75701932 | None:intergenic |
| AACACACCTACACCACCACT+AGG | 0.650603 | 7.1:-75701830 | None:intergenic |
| CCTCCAAAATATCCTTGAGG+AGG | 0.656666 | 7.1:-75701854 | None:intergenic |
| ATGTGGAATTGAGGCATGTG+CGG | 0.658684 | 7.1:+75700977 | MS.gene061417:CDS |
| ATGATACATGTAGTAACATG+TGG | 0.659391 | 7.1:+75702242 | MS.gene061417:CDS |
| TGACCTCCAAAATATCCTTG+AGG | 0.660910 | 7.1:-75701857 | None:intergenic |
| CCACTAAGATCTGTTAGTGG+AGG | 0.673960 | 7.1:-75701533 | None:intergenic |
| TCACATGAAAATCCTAGTGG+TGG | 0.674534 | 7.1:+75701818 | MS.gene061417:CDS |
| ACAACATAGATAGCAGCATG+TGG | 0.675578 | 7.1:+75702017 | MS.gene061417:CDS |
| CAATCACATGAAAATCCTAG+TGG | 0.684612 | 7.1:+75701815 | MS.gene061417:CDS |
| CCACTAACAGATCTTAGTGG+TGG | 0.700550 | 7.1:+75701536 | MS.gene061417:CDS |
| ACACCATGATTTGTATGTGG+TGG | 0.720749 | 7.1:-75702151 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATTATTCTCAATCAATT+TGG | - | chr7.1:75700889-75700908 | None:intergenic | 20.0% |
| !! | CAAAATCTTCAAAGTTAAAT+TGG | - | chr7.1:75702102-75702121 | None:intergenic | 20.0% |
| !! | GTTATAAGAAAAGATTGAAA+GGG | + | chr7.1:75700922-75700941 | MS.gene061417:CDS | 20.0% |
| !!! | ATATCTTTTACTTTAGAAGA+TGG | + | chr7.1:75701380-75701399 | MS.gene061417:CDS | 20.0% |
| !!! | TCTTCTAAAGTAAAAGATAT+TGG | - | chr7.1:75701380-75701399 | None:intergenic | 20.0% |
| ! | AACAATATAGGTAGCAATAT+TGG | + | chr7.1:75701788-75701807 | MS.gene061417:CDS | 25.0% |
| ! | ACAATATAGGTAGCAATATT+GGG | + | chr7.1:75701789-75701808 | MS.gene061417:CDS | 25.0% |
| ! | ACTTTGTTGACAATAATTAC+AGG | + | chr7.1:75702374-75702393 | MS.gene061417:CDS | 25.0% |
| ! | AGAAAATGAAGAGACTTTAA+TGG | + | chr7.1:75701181-75701200 | MS.gene061417:CDS | 25.0% |
| ! | AGAATAATACTCAAAGAAAG+GGG | + | chr7.1:75700898-75700917 | MS.gene061417:CDS | 25.0% |
| ! | CGTTATAAGAAAAGATTGAA+AGG | + | chr7.1:75700921-75700940 | MS.gene061417:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+GGG | + | chr7.1:75701182-75701201 | MS.gene061417:CDS | 25.0% |
| ! | GAGAATAATACTCAAAGAAA+GGG | + | chr7.1:75700897-75700916 | MS.gene061417:CDS | 25.0% |
| ! | TGAGAATAATACTCAAAGAA+AGG | + | chr7.1:75700896-75700915 | MS.gene061417:CDS | 25.0% |
| ! | TTTGAAGATCAAGAAAACTT+TGG | + | chr7.1:75701983-75702002 | MS.gene061417:CDS | 25.0% |
| !! | ACTTTTCATCAAAACAACTT+TGG | + | chr7.1:75702310-75702329 | MS.gene061417:CDS | 25.0% |
| !! | ATACAACATGCAAATTTTAG+TGG | + | chr7.1:75702040-75702059 | MS.gene061417:CDS | 25.0% |
| !! | GGGCATTTTATTAACAATAT+AGG | + | chr7.1:75701776-75701795 | MS.gene061417:CDS | 25.0% |
| !! | TGATCTTCAAAATTTTCTTG+AGG | - | chr7.1:75701974-75701993 | None:intergenic | 25.0% |
| !! | TTTGAAGTTCACAAAAACTT+TGG | + | chr7.1:75702208-75702227 | MS.gene061417:CDS | 25.0% |
| !!! | GATTTTGATAACAACTTTGA+TGG | + | chr7.1:75701596-75701615 | MS.gene061417:CDS | 25.0% |
| ATGATACATGTAGTAACATG+TGG | + | chr7.1:75702242-75702261 | MS.gene061417:CDS | 30.0% | |
| ATGCATCAAATTGAAAACGA+AGG | + | chr7.1:75701212-75701231 | MS.gene061417:CDS | 30.0% | |
| GTGATACAAAACCATCAATA+TGG | + | chr7.1:75701015-75701034 | MS.gene061417:CDS | 30.0% | |
| GTTATCAAAATCGCCAAAAT+CGG | - | chr7.1:75701588-75701607 | None:intergenic | 30.0% | |
| TATCCTTCAGAAAAGTCAAT+TGG | - | chr7.1:75701121-75701140 | None:intergenic | 30.0% | |
| TCATCACATGAAAATCATAG+TGG | + | chr7.1:75701716-75701735 | MS.gene061417:CDS | 30.0% | |
| TTGACTCATACTTGGTTATT+AGG | - | chr7.1:75701064-75701083 | None:intergenic | 30.0% | |
| TTTCATCAAAACAACTTTGG+CGG | + | chr7.1:75702313-75702332 | MS.gene061417:CDS | 30.0% | |
| ! | TCTTCAAAATTTTCTTGAGG+AGG | - | chr7.1:75701971-75701990 | None:intergenic | 30.0% |
| ! | TTACTTTAGAAGATGGTGAT+GGG | + | chr7.1:75701387-75701406 | MS.gene061417:CDS | 30.0% |
| ! | TTGCTTCCTCAAGAAAATTT+TGG | + | chr7.1:75702073-75702092 | MS.gene061417:CDS | 30.0% |
| ! | TTTACTTTAGAAGATGGTGA+TGG | + | chr7.1:75701386-75701405 | MS.gene061417:CDS | 30.0% |
| ! | TTTGATAACAACTTTGATGG+TGG | + | chr7.1:75701599-75701618 | MS.gene061417:CDS | 30.0% |
| !! | ATTGACTTTTCTGAAGGATA+AGG | + | chr7.1:75701121-75701140 | MS.gene061417:CDS | 30.0% |
| !! | GAAGATTTTGATAACAACAC+TGG | + | chr7.1:75702112-75702131 | MS.gene061417:CDS | 30.0% |
| !! | GCAAGATTTTGATAGTATCA+TGG | + | chr7.1:75701688-75701707 | MS.gene061417:CDS | 30.0% |
| !! | TTGACTTTTCTGAAGGATAA+GGG | + | chr7.1:75701122-75701141 | MS.gene061417:CDS | 30.0% |
| !!! | TTTCTTTTTCGATCTTTGCA+AGG | - | chr7.1:75701166-75701185 | None:intergenic | 30.0% |
| AACTTTGGCGGCAATATTAA+TGG | + | chr7.1:75702325-75702344 | MS.gene061417:CDS | 35.0% | |
| ACATTACAGGTAGCAATACA+AGG | + | chr7.1:75701903-75701922 | MS.gene061417:CDS | 35.0% | |
| AGATCACTAGAAAGATGTCT+AGG | + | chr7.1:75701303-75701322 | MS.gene061417:CDS | 35.0% | |
| AGTGGTTTCAATAACAACCA+TGG | + | chr7.1:75701494-75701513 | MS.gene061417:CDS | 35.0% | |
| ATACCACCACATACAAATCA+TGG | + | chr7.1:75702148-75702167 | MS.gene061417:CDS | 35.0% | |
| ATATTAATGGAGATGGGATG+CGG | + | chr7.1:75702338-75702357 | MS.gene061417:CDS | 35.0% | |
| CAAGTATGAGTCAATGTCAT+TGG | + | chr7.1:75701070-75701089 | MS.gene061417:CDS | 35.0% | |
| CAATCACATGAAAATCCTAG+TGG | + | chr7.1:75701815-75701834 | MS.gene061417:CDS | 35.0% | |
| GAAGATCAAGAAAACTTTGG+AGG | + | chr7.1:75701986-75702005 | MS.gene061417:CDS | 35.0% | |
| GAAGTTCACAAAAACTTTGG+AGG | + | chr7.1:75702211-75702230 | MS.gene061417:CDS | 35.0% | |
| GACAATCTTATGTGGAATTG+AGG | + | chr7.1:75700968-75700987 | MS.gene061417:CDS | 35.0% | |
| GATGTCTAGGCATTTAGAAA+AGG | + | chr7.1:75701316-75701335 | MS.gene061417:CDS | 35.0% | |
| TTCTCATTCAGATTTGCATG+TGG | - | chr7.1:75701935-75701954 | None:intergenic | 35.0% | |
| TTCTCGACCAAATCTAACAA+GGG | - | chr7.1:75701458-75701477 | None:intergenic | 35.0% | |
| TTTCTCGACCAAATCTAACA+AGG | - | chr7.1:75701459-75701478 | None:intergenic | 35.0% | |
| ! | AAACCACCACTAGAATTTTC+AGG | - | chr7.1:75701641-75701660 | None:intergenic | 35.0% |
| ! | AAAGTTGATCAAATGACCAG+TGG | + | chr7.1:75701476-75701495 | MS.gene061417:CDS | 35.0% |
| ! | ATGGTTGTTATTGAAACCAC+TGG | - | chr7.1:75701495-75701514 | None:intergenic | 35.0% |
| ! | TACTTTAGAAGATGGTGATG+GGG | + | chr7.1:75701388-75701407 | MS.gene061417:CDS | 35.0% |
| ! | TGGTCTCCAAAATTTTCTTG+AGG | - | chr7.1:75702082-75702101 | None:intergenic | 35.0% |
| !! | CAACATGCAAATTTTAGTGG+TGG | + | chr7.1:75702043-75702062 | MS.gene061417:CDS | 35.0% |
| !! | CAATGACATTGACTCATACT+TGG | - | chr7.1:75701072-75701091 | None:intergenic | 35.0% |
| !! | TGACCAATTGACTTTTCTGA+AGG | + | chr7.1:75701115-75701134 | MS.gene061417:CDS | 35.0% |
| !!! | ATTGATGGTTTTGTATCACC+TGG | - | chr7.1:75701014-75701033 | None:intergenic | 35.0% |
| ACAACATAGATAGCAGCATG+TGG | + | chr7.1:75702017-75702036 | MS.gene061417:CDS | 40.0% | |
| ATATGAACACCACCATTGCT+TGG | - | chr7.1:75702286-75702305 | None:intergenic | 40.0% | |
| ATCAATATGGCCATCTCCTA+CGG | + | chr7.1:75701028-75701047 | MS.gene061417:CDS | 40.0% | |
| CATGAAAATCCAAGCAATGG+TGG | + | chr7.1:75702274-75702293 | MS.gene061417:CDS | 40.0% | |
| CATGATATGTTTCTTCCTCG+TGG | + | chr7.1:75701746-75701765 | MS.gene061417:CDS | 40.0% | |
| CCAAATCTAACAAGGGTTGT+TGG | - | chr7.1:75701451-75701470 | None:intergenic | 40.0% | |
| CCAACAACCCTTGTTAGATT+TGG | + | chr7.1:75701448-75701467 | MS.gene061417:CDS | 40.0% | |
| CCACATACAAATCATGGTGT+TGG | + | chr7.1:75702154-75702173 | MS.gene061417:CDS | 40.0% | |
| CCACATGAAAATCCAAGCAA+TGG | + | chr7.1:75702271-75702290 | MS.gene061417:CDS | 40.0% | |
| CCATCACCTGAAAATTCTAG+TGG | + | chr7.1:75701632-75701651 | MS.gene061417:CDS | 40.0% | |
| GAAAGGGTTGTTCACCAAAA+TGG | + | chr7.1:75700938-75700957 | MS.gene061417:CDS | 40.0% | |
| GCGGCAATATTAATGGAGAT+GGG | + | chr7.1:75702332-75702351 | MS.gene061417:CDS | 40.0% | |
| GTTGGAGGAGGATTATTAAG+AGG | - | chr7.1:75701350-75701369 | None:intergenic | 40.0% | |
| TAACAACCATGGAAGTAGCA+TGG | + | chr7.1:75701505-75701524 | MS.gene061417:CDS | 40.0% | |
| TAATAATCCTCCTCCAACGT+TGG | + | chr7.1:75701352-75701371 | MS.gene061417:CDS | 40.0% | |
| TCACATGAAAATCCTAGTGG+TGG | + | chr7.1:75701818-75701837 | MS.gene061417:CDS | 40.0% | |
| TCACCTGAAAATTCTAGTGG+TGG | + | chr7.1:75701635-75701654 | MS.gene061417:CDS | 40.0% | |
| TGACCTCCAAAATATCCTTG+AGG | - | chr7.1:75701860-75701879 | None:intergenic | 40.0% | |
| TGTTTCTTCCTCGTGGAAAT+CGG | + | chr7.1:75701753-75701772 | MS.gene061417:CDS | 40.0% | |
| ! | ACACCATGATTTGTATGTGG+TGG | - | chr7.1:75702154-75702173 | None:intergenic | 40.0% |
| ! | CCAACACCATGATTTGTATG+TGG | - | chr7.1:75702157-75702176 | None:intergenic | 40.0% |
| ! | CCATTGCTTGGATTTTCATG+TGG | - | chr7.1:75702274-75702293 | None:intergenic | 40.0% |
| ! | TTGCCTCCTCAAGGATATTT+TGG | + | chr7.1:75701851-75701870 | MS.gene061417:CDS | 40.0% |
| ! | TTGCTTGGATTTTCATGTGG+AGG | - | chr7.1:75702271-75702290 | None:intergenic | 40.0% |
| !! | AAAGATATTGGTGCCAACGT+TGG | - | chr7.1:75701368-75701387 | None:intergenic | 40.0% |
| !! | AACAACTTTGATGGTGGCAT+GGG | + | chr7.1:75701605-75701624 | MS.gene061417:CDS | 40.0% |
| !! | CAAGGTTTTGACGACATTAC+AGG | + | chr7.1:75701890-75701909 | MS.gene061417:CDS | 40.0% |
| !! | CATTCTGGGGTTAACATGTA+TGG | + | chr7.1:75701413-75701432 | MS.gene061417:CDS | 40.0% |
| !! | TAACAACTTTGATGGTGGCA+TGG | + | chr7.1:75701604-75701623 | MS.gene061417:CDS | 40.0% |
| !! | TTGGCTAATCAAGCCGATTT+TGG | + | chr7.1:75701572-75701591 | MS.gene061417:CDS | 40.0% |
| !!! | CCACTAGAATTTTCAGGTGA+TGG | - | chr7.1:75701635-75701654 | None:intergenic | 40.0% |
| ATGTGGAATTGAGGCATGTG+CGG | + | chr7.1:75700977-75700996 | MS.gene061417:CDS | 45.0% | |
| CCACCACTAAGATCTGTTAG+TGG | - | chr7.1:75701539-75701558 | None:intergenic | 45.0% | |
| CCACTAACAGATCTTAGTGG+TGG | + | chr7.1:75701536-75701555 | MS.gene061417:CDS | 45.0% | |
| CCACTAAGATCTGTTAGTGG+AGG | - | chr7.1:75701536-75701555 | None:intergenic | 45.0% | |
| CCTCCAAAATATCCTTGAGG+AGG | - | chr7.1:75701857-75701876 | None:intergenic | 45.0% | |
| CCTCCACTAACAGATCTTAG+TGG | + | chr7.1:75701533-75701552 | MS.gene061417:CDS | 45.0% | |
| CTAACAGATCTTAGTGGTGG+TGG | + | chr7.1:75701539-75701558 | MS.gene061417:CDS | 45.0% | |
| GAGCAGGTGACAATCTTATG+TGG | + | chr7.1:75700960-75700979 | MS.gene061417:CDS | 45.0% | |
| GGAGGTCAAAGCAACTTTCA+AGG | + | chr7.1:75701872-75701891 | MS.gene061417:CDS | 45.0% | |
| GGCGGCAATATTAATGGAGA+TGG | + | chr7.1:75702331-75702350 | MS.gene061417:CDS | 45.0% | |
| GTAGGAGATGGCCATATTGA+TGG | - | chr7.1:75701029-75701048 | None:intergenic | 45.0% | |
| GTTGTTCACCAAAATGGAGC+AGG | + | chr7.1:75700944-75700963 | MS.gene061417:CDS | 45.0% | |
| GTTTCTTCCTCGTGGAAATC+GGG | + | chr7.1:75701754-75701773 | MS.gene061417:CDS | 45.0% | |
| TACAGGAACAACTTCAACCC+TGG | + | chr7.1:75702391-75702410 | MS.gene061417:CDS | 45.0% | |
| TTTCTTCCTCGTGGAAATCG+GGG | + | chr7.1:75701755-75701774 | MS.gene061417:CDS | 45.0% | |
| ! | GAAAATCCTAGTGGTGGTGT+AGG | + | chr7.1:75701824-75701843 | MS.gene061417:CDS | 45.0% |
| ! | GATTGTCACCTGCTCCATTT+TGG | - | chr7.1:75700955-75700974 | None:intergenic | 45.0% |
| ! | GTATCTCCATGCTACTTCCA+TGG | - | chr7.1:75701514-75701533 | None:intergenic | 45.0% |
| !! | ATGGTGATGGGGTACATTCT+GGG | + | chr7.1:75701399-75701418 | MS.gene061417:CDS | 45.0% |
| !! | CCTCCTCAAGGATATTTTGG+AGG | + | chr7.1:75701854-75701873 | MS.gene061417:CDS | 45.0% |
| !! | TGGTGGTGGTTGTGATAACT+TGG | + | chr7.1:75701553-75701572 | MS.gene061417:CDS | 45.0% |
| AACACACCTACACCACCACT+AGG | - | chr7.1:75701833-75701852 | None:intergenic | 50.0% | |
| AATATGGCCATCTCCTACGG+TGG | + | chr7.1:75701031-75701050 | MS.gene061417:CDS | 50.0% | |
| AGGCATGTGCGGTTGTGTTT+GGG | + | chr7.1:75700988-75701007 | MS.gene061417:CDS | 50.0% | |
| ATTAGGTCTTCAGCCACCGT+AGG | - | chr7.1:75701047-75701066 | None:intergenic | 50.0% | |
| TTCTTCCTCGTGGAAATCGG+GGG | + | chr7.1:75701756-75701775 | MS.gene061417:CDS | 50.0% | |
| !! | GATATTGGTGCCAACGTTGG+AGG | - | chr7.1:75701365-75701384 | None:intergenic | 50.0% |
| !! | GATGGTGATGGGGTACATTC+TGG | + | chr7.1:75701398-75701417 | MS.gene061417:CDS | 50.0% |
| !! | TGGTGATGGGGTACATTCTG+GGG | + | chr7.1:75701400-75701419 | MS.gene061417:CDS | 50.0% |
| AAATGCCCCCGATTTCCACG+AGG | - | chr7.1:75701764-75701783 | None:intergenic | 55.0% | |
| GAGGCATGTGCGGTTGTGTT+TGG | + | chr7.1:75700987-75701006 | MS.gene061417:CDS | 55.0% | |
| GTAGGTGTGTTGCCTCCTCA+AGG | + | chr7.1:75701842-75701861 | MS.gene061417:CDS | 55.0% | |
| TCTTCAGCCACCGTAGGAGA+TGG | - | chr7.1:75701041-75701060 | None:intergenic | 55.0% | |
| !! | ATTGGTGCCAACGTTGGAGG+AGG | - | chr7.1:75701362-75701381 | None:intergenic | 55.0% |
| TGTGCGGTTGTGTTTGGGCC+AGG | + | chr7.1:75700993-75701012 | MS.gene061417:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 75700855 | 75702429 | 75700855 | ID=MS.gene061417 |
| chr7.1 | mRNA | 75700855 | 75702429 | 75700855 | ID=MS.gene061417.t1;Parent=MS.gene061417 |
| chr7.1 | exon | 75700855 | 75702429 | 75700855 | ID=MS.gene061417.t1.exon1;Parent=MS.gene061417.t1 |
| chr7.1 | CDS | 75700855 | 75702429 | 75700855 | ID=cds.MS.gene061417.t1;Parent=MS.gene061417.t1 |
| Gene Sequence |
| Protein sequence |
