Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061424.t1 | XP_013454922.1 | 79.2 | 524 | 104 | 2 | 1 | 524 | 1 | 519 | 6.50E-148 | 534.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061424.t1 | Q7XJK8 | 29.5 | 237 | 153 | 5 | 6 | 233 | 2 | 233 | 3.3e-15 | 84.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061424.t1 | A0A072USW1 | 79.2 | 524 | 104 | 2 | 1 | 524 | 1 | 519 | 4.7e-148 | 534.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene061424.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061424.t1 | MTR_7g106510 | 82.824 | 524 | 69 | 4 | 1 | 524 | 1 | 503 | 0.0 | 817 |
| MS.gene061424.t1 | MTR_4g019670 | 82.824 | 524 | 85 | 2 | 1 | 524 | 1 | 519 | 0.0 | 817 |
| MS.gene061424.t1 | MTR_3g093900 | 44.863 | 584 | 248 | 8 | 1 | 524 | 1 | 570 | 2.06e-137 | 409 |
| MS.gene061424.t1 | MTR_8g467500 | 53.906 | 256 | 114 | 1 | 13 | 268 | 13 | 264 | 1.06e-68 | 223 |
| MS.gene061424.t1 | MTR_5g075380 | 35.443 | 158 | 98 | 4 | 7 | 162 | 4 | 159 | 3.88e-24 | 99.4 |
| MS.gene061424.t1 | MTR_3g466980 | 33.333 | 165 | 106 | 2 | 1 | 164 | 1 | 162 | 1.01e-23 | 99.8 |
| MS.gene061424.t1 | MTR_8g036130 | 37.405 | 131 | 80 | 1 | 4 | 132 | 1 | 131 | 1.02e-21 | 94.7 |
| MS.gene061424.t1 | MTR_3g466830 | 34.667 | 150 | 97 | 1 | 6 | 154 | 2 | 151 | 2.28e-21 | 91.3 |
| MS.gene061424.t1 | MTR_4g032620 | 35.246 | 122 | 79 | 0 | 6 | 127 | 3 | 124 | 7.62e-21 | 92.0 |
| MS.gene061424.t1 | MTR_3g466890 | 31.373 | 153 | 104 | 1 | 6 | 157 | 2 | 154 | 1.51e-19 | 86.3 |
| MS.gene061424.t1 | MTR_4g031910 | 38.415 | 164 | 88 | 3 | 1 | 160 | 1 | 155 | 2.13e-19 | 87.8 |
| MS.gene061424.t1 | MTR_2g016210 | 31.034 | 145 | 99 | 1 | 7 | 150 | 4 | 148 | 3.11e-19 | 87.4 |
| MS.gene061424.t1 | MTR_3g065100 | 39.316 | 117 | 71 | 0 | 6 | 122 | 3 | 119 | 6.21e-18 | 83.6 |
| MS.gene061424.t1 | MTR_1g090710 | 33.043 | 115 | 76 | 1 | 6 | 120 | 3 | 116 | 1.78e-17 | 80.1 |
| MS.gene061424.t1 | MTR_4g032260 | 40.625 | 96 | 57 | 0 | 37 | 132 | 34 | 129 | 2.03e-17 | 80.1 |
| MS.gene061424.t1 | MTR_4g032290 | 32.500 | 160 | 81 | 4 | 37 | 175 | 34 | 187 | 7.77e-17 | 80.1 |
| MS.gene061424.t1 | MTR_2g035610 | 37.600 | 125 | 75 | 1 | 1 | 125 | 1 | 122 | 2.14e-16 | 75.9 |
| MS.gene061424.t1 | MTR_4g028800 | 44.286 | 70 | 37 | 1 | 7 | 76 | 4 | 71 | 5.15e-16 | 73.2 |
| MS.gene061424.t1 | MTR_5g047580 | 35.000 | 120 | 74 | 2 | 1 | 120 | 1 | 116 | 7.85e-16 | 75.5 |
| MS.gene061424.t1 | MTR_3g031100 | 29.915 | 117 | 82 | 0 | 6 | 122 | 3 | 119 | 9.88e-16 | 77.4 |
| MS.gene061424.t1 | MTR_3g466900 | 32.258 | 124 | 83 | 1 | 35 | 157 | 2 | 125 | 1.14e-15 | 74.3 |
| MS.gene061424.t1 | MTR_3g031240 | 27.350 | 117 | 85 | 0 | 6 | 122 | 3 | 119 | 1.22e-15 | 75.5 |
| MS.gene061424.t1 | MTR_3g466930 | 33.065 | 124 | 82 | 1 | 35 | 157 | 2 | 125 | 1.25e-15 | 73.9 |
| MS.gene061424.t1 | MTR_4g063790 | 28.387 | 155 | 103 | 3 | 6 | 155 | 3 | 154 | 1.44e-15 | 75.1 |
| MS.gene061424.t1 | MTR_1g090783 | 26.897 | 145 | 105 | 1 | 6 | 150 | 2 | 145 | 5.68e-15 | 72.8 |
| MS.gene061424.t1 | MTR_1g077390 | 32.174 | 115 | 77 | 1 | 6 | 120 | 3 | 116 | 1.52e-14 | 71.6 |
| MS.gene061424.t1 | MTR_1g090697 | 28.000 | 150 | 104 | 2 | 1 | 150 | 1 | 146 | 1.32e-13 | 68.9 |
| MS.gene061424.t1 | MTR_4g028720 | 33.333 | 147 | 94 | 2 | 6 | 149 | 3 | 148 | 4.83e-13 | 67.4 |
| MS.gene061424.t1 | MTR_1g084950 | 36.975 | 119 | 70 | 2 | 6 | 120 | 3 | 120 | 1.66e-12 | 65.9 |
| MS.gene061424.t1 | MTR_1g077300 | 28.221 | 163 | 105 | 3 | 6 | 167 | 3 | 154 | 3.05e-12 | 65.1 |
| MS.gene061424.t1 | MTR_3g467080 | 25.000 | 156 | 113 | 2 | 6 | 157 | 3 | 158 | 5.86e-12 | 64.3 |
| MS.gene061424.t1 | MTR_1g077320 | 32.237 | 152 | 96 | 3 | 1 | 149 | 1 | 148 | 5.95e-12 | 64.3 |
| MS.gene061424.t1 | MTR_7g011950 | 32.895 | 152 | 95 | 3 | 1 | 149 | 1 | 148 | 6.55e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061424.t1 | AT1G65300 | 37.391 | 115 | 72 | 0 | 6 | 120 | 2 | 116 | 3.77e-20 | 90.9 |
| MS.gene061424.t1 | AT2G40210 | 28.743 | 167 | 116 | 2 | 4 | 170 | 1 | 164 | 1.89e-19 | 90.5 |
| MS.gene061424.t1 | AT3G05860 | 32.117 | 137 | 89 | 2 | 1 | 136 | 1 | 134 | 3.46e-17 | 81.6 |
| MS.gene061424.t1 | AT3G05860 | 32.117 | 137 | 89 | 2 | 1 | 136 | 1 | 134 | 3.80e-17 | 82.0 |
| MS.gene061424.t1 | AT3G05860 | 32.117 | 137 | 89 | 2 | 1 | 136 | 1 | 134 | 6.66e-17 | 80.1 |
| MS.gene061424.t1 | AT5G26650 | 32.456 | 114 | 77 | 0 | 7 | 120 | 2 | 115 | 2.20e-16 | 81.3 |
| MS.gene061424.t1 | AT5G27960 | 32.456 | 114 | 77 | 0 | 7 | 120 | 2 | 115 | 5.59e-16 | 79.3 |
| MS.gene061424.t1 | AT1G31630 | 33.043 | 115 | 76 | 1 | 6 | 120 | 2 | 115 | 1.25e-15 | 78.6 |
| MS.gene061424.t1 | AT5G06500 | 29.861 | 144 | 100 | 1 | 6 | 149 | 3 | 145 | 1.90e-15 | 76.6 |
| MS.gene061424.t1 | AT1G65330 | 33.628 | 113 | 75 | 0 | 8 | 120 | 4 | 116 | 1.28e-14 | 74.7 |
| MS.gene061424.t1 | AT2G28700 | 30.769 | 117 | 81 | 0 | 4 | 120 | 1 | 117 | 1.60e-14 | 75.1 |
| MS.gene061424.t1 | AT1G31640 | 32.174 | 115 | 77 | 1 | 6 | 120 | 2 | 115 | 1.64e-14 | 76.3 |
| MS.gene061424.t1 | AT5G26630 | 34.270 | 178 | 108 | 5 | 1 | 177 | 1 | 170 | 3.17e-14 | 72.4 |
| MS.gene061424.t1 | AT5G48670 | 35.897 | 117 | 75 | 0 | 6 | 122 | 3 | 119 | 4.62e-14 | 73.6 |
| MS.gene061424.t1 | AT2G15660 | 31.852 | 135 | 85 | 5 | 40 | 171 | 30 | 160 | 5.27e-14 | 72.4 |
| MS.gene061424.t1 | AT1G22590 | 27.523 | 109 | 76 | 1 | 6 | 114 | 3 | 108 | 6.78e-14 | 70.1 |
Find 103 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTCCTCAAGAAAATTT+TGG | 0.166377 | 7.1:+75501246 | MS.gene061424:CDS |
| TTGACTCAAACTTGGTTATT+AGG | 0.210241 | 7.1:-75500234 | None:intergenic |
| TTGGCTAATCAAGCCGATTT+TGG | 0.211096 | 7.1:+75500745 | MS.gene061424:CDS |
| AACAATATAGGTAGCAATAT+TGG | 0.211965 | 7.1:+75500961 | MS.gene061424:CDS |
| TTGTCTCCTCAAGGCTATTT+TGG | 0.216341 | 7.1:+75501024 | MS.gene061424:CDS |
| AGTATGATTCTCAATCAATT+TGG | 0.227799 | 7.1:-75500059 | None:intergenic |
| CAAAATCTTCAAAGTTAAAT+TGG | 0.246957 | 7.1:-75501272 | None:intergenic |
| GATTGTCACCTGCTCCATTT+TGG | 0.265823 | 7.1:-75500125 | None:intergenic |
| TTTGATAACAACTTTGATAA+TGG | 0.285439 | 7.1:+75500772 | MS.gene061424:CDS |
| GAAAGGGTTGTTCACCAAAA+TGG | 0.296295 | 7.1:+75500111 | MS.gene061424:CDS |
| GATGGTGATGGGGTACATTC+TGG | 0.296453 | 7.1:+75500571 | MS.gene061424:CDS |
| AGAAAATGAAGAGACTTTAA+TGG | 0.303503 | 7.1:+75500354 | MS.gene061424:CDS |
| CCAACAACCCTTGTTAGATT+TGG | 0.312296 | 7.1:+75500621 | MS.gene061424:CDS |
| GAGGCATGTGCGGTTGTGTT+TGG | 0.334552 | 7.1:+75500160 | MS.gene061424:CDS |
| TGTTTCTTCCTCGTGGAAAT+CGG | 0.350712 | 7.1:+75500926 | MS.gene061424:CDS |
| GTTTCTTCCTCGTGGAAATC+GGG | 0.362437 | 7.1:+75500927 | MS.gene061424:CDS |
| AACTTTGGCGGGAATATTGA+TGG | 0.377307 | 7.1:+75501498 | MS.gene061424:CDS |
| ACAATATAGGTAGCAATATT+GGG | 0.381596 | 7.1:+75500962 | MS.gene061424:CDS |
| AGGCATGTGCGGTTGTGTTT+GGG | 0.389221 | 7.1:+75500161 | MS.gene061424:CDS |
| TTTGAAGATCAAGAAAACTT+TGG | 0.393915 | 7.1:+75501156 | MS.gene061424:CDS |
| GTTATCAAAATCGCCAAAAT+CGG | 0.397560 | 7.1:-75500758 | None:intergenic |
| TTTGAAGTTCACGGAAACTT+TGG | 0.397952 | 7.1:+75501381 | MS.gene061424:CDS |
| TCTTCTAAAGTAAAAGATAT+TGG | 0.398866 | 7.1:-75500550 | None:intergenic |
| CTTCAACCTTGGATTTCCTT+CGG | 0.401438 | 7.1:+75501575 | MS.gene061424:CDS |
| TACAAGAGCAACTTCAACCT+TGG | 0.408979 | 7.1:+75501564 | MS.gene061424:CDS |
| GTGATACAAAGCCATCAATA+TGG | 0.420781 | 7.1:+75500188 | MS.gene061424:CDS |
| GGCGGGAATATTGATGGAGA+TGG | 0.421988 | 7.1:+75501504 | MS.gene061424:CDS |
| GAAAATGAAGAGACTTTAAT+GGG | 0.430958 | 7.1:+75500355 | MS.gene061424:CDS |
| ATGGTGATGGGGTACATTCT+GGG | 0.432610 | 7.1:+75500572 | MS.gene061424:CDS |
| CATTCTGGGGTTAACATGTA+TGG | 0.436691 | 7.1:+75500586 | MS.gene061424:CDS |
| TGTGCGGTTGTGTTTGGGCC+AGG | 0.446264 | 7.1:+75500166 | MS.gene061424:CDS |
| ATATGAACACCACCATTGCT+TGG | 0.455645 | 7.1:-75501456 | None:intergenic |
| GTAGGAGATGGCCATATTGA+TGG | 0.460403 | 7.1:-75500199 | None:intergenic |
| GGAGGTCAAAGCAACTTTCA+AGG | 0.462180 | 7.1:+75501045 | MS.gene061424:CDS |
| GAAGATCAAGAAAACTTTGG+AGG | 0.480766 | 7.1:+75501159 | MS.gene061424:CDS |
| GCGGGAATATTGATGGAGAT+GGG | 0.484528 | 7.1:+75501505 | MS.gene061424:CDS |
| CCAAATCTAACAAGGGTTGT+TGG | 0.489048 | 7.1:-75500621 | None:intergenic |
| GATGTCTAGGCATTTAGAAA+AGG | 0.494516 | 7.1:+75500489 | MS.gene061424:CDS |
| TTCATCAAAACAACTTTGGC+GGG | 0.497359 | 7.1:+75501487 | MS.gene061424:CDS |
| ATCAATATGGCCATCTCCTA+CGG | 0.502373 | 7.1:+75500201 | MS.gene061424:CDS |
| TTTCATCAAAACAACTTTGG+CGG | 0.502580 | 7.1:+75501486 | MS.gene061424:CDS |
| GATGGAGGAGGATTATTAAG+AGG | 0.505755 | 7.1:-75500520 | None:intergenic |
| TTTACTTTAGAAGATGGTGA+TGG | 0.506036 | 7.1:+75500559 | MS.gene061424:CDS |
| TTACTTTAGAAGATGGTGAT+GGG | 0.515841 | 7.1:+75500560 | MS.gene061424:CDS |
| AACAACCATGGAAGTAGCAT+GGG | 0.515871 | 7.1:+75500679 | MS.gene061424:CDS |
| ATGCATCAAATTGAAAATGA+AGG | 0.516317 | 7.1:+75500385 | MS.gene061424:CDS |
| ATTGATGGCTTTGTATCACC+TGG | 0.518792 | 7.1:-75500184 | None:intergenic |
| TGAGAATCATACTCAAAGAA+AGG | 0.521008 | 7.1:+75500069 | MS.gene061424:CDS |
| ATACCACCACATACAAATCA+TGG | 0.521732 | 7.1:+75501321 | MS.gene061424:CDS |
| TAACAACTTTGATAATGGCA+TGG | 0.528915 | 7.1:+75500777 | MS.gene061424:CDS |
| GAATGACATTGACTCAAACT+TGG | 0.529201 | 7.1:-75500242 | None:intergenic |
| GAAGTTCACGGAAACTTTGG+AGG | 0.534452 | 7.1:+75501384 | MS.gene061424:CDS |
| GTATCCCCATGCTACTTCCA+TGG | 0.535942 | 7.1:-75500684 | None:intergenic |
| ATATTGATGGAGATGGGATG+CGG | 0.537575 | 7.1:+75501511 | MS.gene061424:CDS |
| GTTATAAGAAAAGATTGAAA+GGG | 0.540577 | 7.1:+75500095 | MS.gene061424:CDS |
| CATGATATGTTTCTTCCTCG+TGG | 0.547514 | 7.1:+75500919 | MS.gene061424:CDS |
| CCTGCACTAACAGATCTTAG+TGG | 0.548053 | 7.1:+75500706 | MS.gene061424:CDS |
| CGTTATAAGAAAAGATTGAA+AGG | 0.551031 | 7.1:+75500094 | MS.gene061424:CDS |
| TTTCTTCCTCGTGGAAATCG+GGG | 0.553511 | 7.1:+75500928 | MS.gene061424:CDS |
| GTTGTTCACCAAAATGGAGC+AGG | 0.556851 | 7.1:+75500117 | MS.gene061424:CDS |
| AACAACTTTGATAATGGCAT+GGG | 0.559423 | 7.1:+75500778 | MS.gene061424:CDS |
| TCTTCAGCCACCGTAGGAGA+TGG | 0.560949 | 7.1:-75500211 | None:intergenic |
| GTAGGTGTGTTGTCTCCTCA+AGG | 0.565057 | 7.1:+75501015 | MS.gene061424:CDS |
| TGGTGGTGGTTGTGATAACT+TGG | 0.567708 | 7.1:+75500726 | MS.gene061424:CDS |
| AGATCACTAGAAAGATGTCT+AGG | 0.570407 | 7.1:+75500476 | MS.gene061424:CDS |
| TTTCTCGACCAAATCTAACA+AGG | 0.571412 | 7.1:-75500629 | None:intergenic |
| AATATGGCCATCTCCTACGG+TGG | 0.571701 | 7.1:+75500204 | MS.gene061424:CDS |
| TAATAATCCTCCTCCATCGT+TGG | 0.573169 | 7.1:+75500525 | MS.gene061424:CDS |
| CTAACAGATCTTAGTGGTGG+TGG | 0.573212 | 7.1:+75500712 | MS.gene061424:CDS |
| ATTGGTGCCAACGATGGAGG+AGG | 0.576273 | 7.1:-75500532 | None:intergenic |
| TAACAACCATGGAAGTAGCA+TGG | 0.577578 | 7.1:+75500678 | MS.gene061424:CDS |
| AAAGATATTGGTGCCAACGA+TGG | 0.578886 | 7.1:-75500538 | None:intergenic |
| TACTTTAGAAGATGGTGATG+GGG | 0.582286 | 7.1:+75500561 | MS.gene061424:CDS |
| GACAATCTTATGTGGCATTG+AGG | 0.582492 | 7.1:+75500141 | MS.gene061424:CDS |
| CCAACACCATGATTTGTATG+TGG | 0.583138 | 7.1:-75501327 | None:intergenic |
| TGGTGATGGGGTACATTCTG+GGG | 0.588241 | 7.1:+75500573 | MS.gene061424:CDS |
| CCACTAAGATCTGTTAGTGC+AGG | 0.592498 | 7.1:-75500706 | None:intergenic |
| TTTATTCCGAAGGAAATCCA+AGG | 0.596097 | 7.1:-75501581 | None:intergenic |
| GATATTGGTGCCAACGATGG+AGG | 0.597015 | 7.1:-75500535 | None:intergenic |
| TTCTCGACCAAATCTAACAA+GGG | 0.605573 | 7.1:-75500628 | None:intergenic |
| CATGAAAATCCAAGCAATGG+TGG | 0.610991 | 7.1:+75501447 | MS.gene061424:CDS |
| CCACATGAAAATCCAAGCAA+TGG | 0.614633 | 7.1:+75501444 | MS.gene061424:CDS |
| TCACCTGAAAATTCTAGTGG+TGG | 0.615267 | 7.1:+75500808 | MS.gene061424:CDS |
| CCACATACAAATCATGGTGT+TGG | 0.616507 | 7.1:+75501327 | MS.gene061424:CDS |
| AAAGTTGATCAAATGAGCAG+TGG | 0.618596 | 7.1:+75500649 | MS.gene061424:CDS |
| TTCTTCCTCGTGGAAATCGG+GGG | 0.619288 | 7.1:+75500929 | MS.gene061424:CDS |
| GAGCAGGTGACAATCTTATG+TGG | 0.620327 | 7.1:+75500133 | MS.gene061424:CDS |
| ATTAGGTCTTCAGCCACCGT+AGG | 0.620414 | 7.1:-75500217 | None:intergenic |
| CCATCACCTGAAAATTCTAG+TGG | 0.626301 | 7.1:+75500805 | MS.gene061424:CDS |
| GAAAATCCTAGTGGTGGTGT+AGG | 0.627650 | 7.1:+75500997 | MS.gene061424:CDS |
| TCATCACATGAAAATCATAG+TGG | 0.635133 | 7.1:+75500889 | MS.gene061424:CDS |
| TTCTCATTCAGATTTGCATG+TGG | 0.650408 | 7.1:-75501105 | None:intergenic |
| AACACACCTACACCACCACT+AGG | 0.650603 | 7.1:-75501003 | None:intergenic |
| AGTGGTTTCATTAACAACCA+TGG | 0.657021 | 7.1:+75500667 | MS.gene061424:CDS |
| ATGATACATGTAGCAACATG+TGG | 0.657144 | 7.1:+75501415 | MS.gene061424:CDS |
| ATGTGGCATTGAGGCATGTG+CGG | 0.658684 | 7.1:+75500150 | MS.gene061424:CDS |
| ACATCATAGATAGCAGCATG+TGG | 0.662980 | 7.1:+75501190 | MS.gene061424:CDS |
| TCACATGAAAATCCTAGTGG+TGG | 0.674534 | 7.1:+75500991 | MS.gene061424:CDS |
| CAATCACATGAAAATCCTAG+TGG | 0.684612 | 7.1:+75500988 | MS.gene061424:CDS |
| TGACCTCCAAAATAGCCTTG+AGG | 0.689761 | 7.1:-75501030 | None:intergenic |
| GCACTAACAGATCTTAGTGG+TGG | 0.706277 | 7.1:+75500709 | MS.gene061424:CDS |
| ACAACCATGGAAGTAGCATG+GGG | 0.707023 | 7.1:+75500680 | MS.gene061424:CDS |
| ACACCATGATTTGTATGTGG+TGG | 0.720749 | 7.1:-75501324 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATCTTCAAAGTTAAAT+TGG | - | chr7.1:75501275-75501294 | None:intergenic | 20.0% |
| !! | GTTATAAGAAAAGATTGAAA+GGG | + | chr7.1:75500095-75500114 | MS.gene061424:CDS | 20.0% |
| !!! | ATATCTTTTACTTTAGAAGA+TGG | + | chr7.1:75500553-75500572 | MS.gene061424:CDS | 20.0% |
| !!! | TCTTCTAAAGTAAAAGATAT+TGG | - | chr7.1:75500553-75500572 | None:intergenic | 20.0% |
| !!! | TTTGATAACAACTTTGATAA+TGG | + | chr7.1:75500772-75500791 | MS.gene061424:CDS | 20.0% |
| ! | AACAATATAGGTAGCAATAT+TGG | + | chr7.1:75500961-75500980 | MS.gene061424:CDS | 25.0% |
| ! | ACAATATAGGTAGCAATATT+GGG | + | chr7.1:75500962-75500981 | MS.gene061424:CDS | 25.0% |
| ! | AGAAAATGAAGAGACTTTAA+TGG | + | chr7.1:75500354-75500373 | MS.gene061424:CDS | 25.0% |
| ! | AGTATGATTCTCAATCAATT+TGG | - | chr7.1:75500062-75500081 | None:intergenic | 25.0% |
| ! | ATGCATCAAATTGAAAATGA+AGG | + | chr7.1:75500385-75500404 | MS.gene061424:CDS | 25.0% |
| ! | CGTTATAAGAAAAGATTGAA+AGG | + | chr7.1:75500094-75500113 | MS.gene061424:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+GGG | + | chr7.1:75500355-75500374 | MS.gene061424:CDS | 25.0% |
| ! | TTTGAAGATCAAGAAAACTT+TGG | + | chr7.1:75501156-75501175 | MS.gene061424:CDS | 25.0% |
| !! | ACTTTTCATCAAAACAACTT+TGG | + | chr7.1:75501483-75501502 | MS.gene061424:CDS | 25.0% |
| !! | ATACAACATGCAAATTTTAG+TGG | + | chr7.1:75501213-75501232 | MS.gene061424:CDS | 25.0% |
| !! | GGGCATTTTATTAACAATAT+AGG | + | chr7.1:75500949-75500968 | MS.gene061424:CDS | 25.0% |
| !! | TGATCTTCAAAATTTTCTTG+AGG | - | chr7.1:75501147-75501166 | None:intergenic | 25.0% |
| !!! | CAAAGAAATTTTGAAGTTCA+CGG | + | chr7.1:75501372-75501391 | MS.gene061424:CDS | 25.0% |
| GTTATCAAAATCGCCAAAAT+CGG | - | chr7.1:75500761-75500780 | None:intergenic | 30.0% | |
| TATCCTCCAAAAAAGTCAAT+TGG | - | chr7.1:75500294-75500313 | None:intergenic | 30.0% | |
| TCATCACATGAAAATCATAG+TGG | + | chr7.1:75500889-75500908 | MS.gene061424:CDS | 30.0% | |
| TGAGAATCATACTCAAAGAA+AGG | + | chr7.1:75500069-75500088 | MS.gene061424:CDS | 30.0% | |
| TTGACTCAAACTTGGTTATT+AGG | - | chr7.1:75500237-75500256 | None:intergenic | 30.0% | |
| TTTCATCAAAACAACTTTGG+CGG | + | chr7.1:75501486-75501505 | MS.gene061424:CDS | 30.0% | |
| ! | TCTTCAAAATTTTCTTGAGG+AGG | - | chr7.1:75501144-75501163 | None:intergenic | 30.0% |
| ! | TTACTTTAGAAGATGGTGAT+GGG | + | chr7.1:75500560-75500579 | MS.gene061424:CDS | 30.0% |
| ! | TTGCTTCCTCAAGAAAATTT+TGG | + | chr7.1:75501246-75501265 | MS.gene061424:CDS | 30.0% |
| ! | TTTACTTTAGAAGATGGTGA+TGG | + | chr7.1:75500559-75500578 | MS.gene061424:CDS | 30.0% |
| !! | AACAACTTTGATAATGGCAT+GGG | + | chr7.1:75500778-75500797 | MS.gene061424:CDS | 30.0% |
| !! | GAAGATTTTGATAACAACAC+AGG | + | chr7.1:75501285-75501304 | MS.gene061424:CDS | 30.0% |
| !! | GCAAGATTTTGATAGTATCA+TGG | + | chr7.1:75500861-75500880 | MS.gene061424:CDS | 30.0% |
| !! | TAACAACTTTGATAATGGCA+TGG | + | chr7.1:75500777-75500796 | MS.gene061424:CDS | 30.0% |
| !!! | ATTGACTTTTTTGGAGGATA+AGG | + | chr7.1:75500294-75500313 | MS.gene061424:CDS | 30.0% |
| !!! | TTGACTTTTTTGGAGGATAA+GGG | + | chr7.1:75500295-75500314 | MS.gene061424:CDS | 30.0% |
| !!! | TTTCTTTTTCGATCTTTGCA+AGG | - | chr7.1:75500339-75500358 | None:intergenic | 30.0% |
| AGATCACTAGAAAGATGTCT+AGG | + | chr7.1:75500476-75500495 | MS.gene061424:CDS | 35.0% | |
| AGTGGTTTCATTAACAACCA+TGG | + | chr7.1:75500667-75500686 | MS.gene061424:CDS | 35.0% | |
| ATACCACCACATACAAATCA+TGG | + | chr7.1:75501321-75501340 | MS.gene061424:CDS | 35.0% | |
| ATGATACATGTAGCAACATG+TGG | + | chr7.1:75501415-75501434 | MS.gene061424:CDS | 35.0% | |
| CAATCACATGAAAATCCTAG+TGG | + | chr7.1:75500988-75501007 | MS.gene061424:CDS | 35.0% | |
| GAAGATCAAGAAAACTTTGG+AGG | + | chr7.1:75501159-75501178 | MS.gene061424:CDS | 35.0% | |
| GATGTCTAGGCATTTAGAAA+AGG | + | chr7.1:75500489-75500508 | MS.gene061424:CDS | 35.0% | |
| GTGATACAAAGCCATCAATA+TGG | + | chr7.1:75500188-75500207 | MS.gene061424:CDS | 35.0% | |
| TTCATCAAAACAACTTTGGC+GGG | + | chr7.1:75501487-75501506 | MS.gene061424:CDS | 35.0% | |
| TTCTCATTCAGATTTGCATG+TGG | - | chr7.1:75501108-75501127 | None:intergenic | 35.0% | |
| TTCTCGACCAAATCTAACAA+GGG | - | chr7.1:75500631-75500650 | None:intergenic | 35.0% | |
| TTTCTCGACCAAATCTAACA+AGG | - | chr7.1:75500632-75500651 | None:intergenic | 35.0% | |
| ! | AAACCACCACTAGAATTTTC+AGG | - | chr7.1:75500814-75500833 | None:intergenic | 35.0% |
| ! | AAAGTTGATCAAATGAGCAG+TGG | + | chr7.1:75500649-75500668 | MS.gene061424:CDS | 35.0% |
| ! | TACTTTAGAAGATGGTGATG+GGG | + | chr7.1:75500561-75500580 | MS.gene061424:CDS | 35.0% |
| ! | TGGTCTCCAAAATTTTCTTG+AGG | - | chr7.1:75501255-75501274 | None:intergenic | 35.0% |
| ! | TTTGAAGTTCACGGAAACTT+TGG | + | chr7.1:75501381-75501400 | MS.gene061424:CDS | 35.0% |
| !! | CAACATGCAAATTTTAGTGG+TGG | + | chr7.1:75501216-75501235 | MS.gene061424:CDS | 35.0% |
| !! | CAAGGTTTTGATGACATTAC+AGG | + | chr7.1:75501063-75501082 | MS.gene061424:CDS | 35.0% |
| !! | GAATGACATTGACTCAAACT+TGG | - | chr7.1:75500245-75500264 | None:intergenic | 35.0% |
| !!! | GACTGACCAATTGACTTTTT+TGG | + | chr7.1:75500285-75500304 | MS.gene061424:CDS | 35.0% |
| !!! | TGACCAATTGACTTTTTTGG+AGG | + | chr7.1:75500288-75500307 | MS.gene061424:CDS | 35.0% |
| AACAACCATGGAAGTAGCAT+GGG | + | chr7.1:75500679-75500698 | MS.gene061424:CDS | 40.0% | |
| AACTTTGGCGGGAATATTGA+TGG | + | chr7.1:75501498-75501517 | MS.gene061424:CDS | 40.0% | |
| ACATCATAGATAGCAGCATG+TGG | + | chr7.1:75501190-75501209 | MS.gene061424:CDS | 40.0% | |
| ATATGAACACCACCATTGCT+TGG | - | chr7.1:75501459-75501478 | None:intergenic | 40.0% | |
| ATATTGATGGAGATGGGATG+CGG | + | chr7.1:75501511-75501530 | MS.gene061424:CDS | 40.0% | |
| ATCAATATGGCCATCTCCTA+CGG | + | chr7.1:75500201-75500220 | MS.gene061424:CDS | 40.0% | |
| CATGAAAATCCAAGCAATGG+TGG | + | chr7.1:75501447-75501466 | MS.gene061424:CDS | 40.0% | |
| CATGATATGTTTCTTCCTCG+TGG | + | chr7.1:75500919-75500938 | MS.gene061424:CDS | 40.0% | |
| CCAAATCTAACAAGGGTTGT+TGG | - | chr7.1:75500624-75500643 | None:intergenic | 40.0% | |
| CCAACAACCCTTGTTAGATT+TGG | + | chr7.1:75500621-75500640 | MS.gene061424:CDS | 40.0% | |
| CCACATACAAATCATGGTGT+TGG | + | chr7.1:75501327-75501346 | MS.gene061424:CDS | 40.0% | |
| CCACATGAAAATCCAAGCAA+TGG | + | chr7.1:75501444-75501463 | MS.gene061424:CDS | 40.0% | |
| CCATCACCTGAAAATTCTAG+TGG | + | chr7.1:75500805-75500824 | MS.gene061424:CDS | 40.0% | |
| CTTCAACCTTGGATTTCCTT+CGG | + | chr7.1:75501575-75501594 | MS.gene061424:CDS | 40.0% | |
| GAAAGGGTTGTTCACCAAAA+TGG | + | chr7.1:75500111-75500130 | MS.gene061424:CDS | 40.0% | |
| GACAATCTTATGTGGCATTG+AGG | + | chr7.1:75500141-75500160 | MS.gene061424:CDS | 40.0% | |
| GATGGAGGAGGATTATTAAG+AGG | - | chr7.1:75500523-75500542 | None:intergenic | 40.0% | |
| TAACAACCATGGAAGTAGCA+TGG | + | chr7.1:75500678-75500697 | MS.gene061424:CDS | 40.0% | |
| TAATAATCCTCCTCCATCGT+TGG | + | chr7.1:75500525-75500544 | MS.gene061424:CDS | 40.0% | |
| TACAAGAGCAACTTCAACCT+TGG | + | chr7.1:75501564-75501583 | MS.gene061424:CDS | 40.0% | |
| TCACATGAAAATCCTAGTGG+TGG | + | chr7.1:75500991-75501010 | MS.gene061424:CDS | 40.0% | |
| TCACCTGAAAATTCTAGTGG+TGG | + | chr7.1:75500808-75500827 | MS.gene061424:CDS | 40.0% | |
| TGTTTCTTCCTCGTGGAAAT+CGG | + | chr7.1:75500926-75500945 | MS.gene061424:CDS | 40.0% | |
| ! | ACACCATGATTTGTATGTGG+TGG | - | chr7.1:75501327-75501346 | None:intergenic | 40.0% |
| ! | CCAACACCATGATTTGTATG+TGG | - | chr7.1:75501330-75501349 | None:intergenic | 40.0% |
| ! | CCATTGCTTGGATTTTCATG+TGG | - | chr7.1:75501447-75501466 | None:intergenic | 40.0% |
| ! | TTGCTTGGATTTTCATGTGG+AGG | - | chr7.1:75501444-75501463 | None:intergenic | 40.0% |
| ! | TTGTCTCCTCAAGGCTATTT+TGG | + | chr7.1:75501024-75501043 | MS.gene061424:CDS | 40.0% |
| !! | AAAGATATTGGTGCCAACGA+TGG | - | chr7.1:75500541-75500560 | None:intergenic | 40.0% |
| !! | ATTGATGGCTTTGTATCACC+TGG | - | chr7.1:75500187-75500206 | None:intergenic | 40.0% |
| !! | CATTCTGGGGTTAACATGTA+TGG | + | chr7.1:75500586-75500605 | MS.gene061424:CDS | 40.0% |
| !! | TTGGCTAATCAAGCCGATTT+TGG | + | chr7.1:75500745-75500764 | MS.gene061424:CDS | 40.0% |
| !!! | CCACTAGAATTTTCAGGTGA+TGG | - | chr7.1:75500808-75500827 | None:intergenic | 40.0% |
| ACAACCATGGAAGTAGCATG+GGG | + | chr7.1:75500680-75500699 | MS.gene061424:CDS | 45.0% | |
| CCACTAAGATCTGTTAGTGC+AGG | - | chr7.1:75500709-75500728 | None:intergenic | 45.0% | |
| CCTGCACTAACAGATCTTAG+TGG | + | chr7.1:75500706-75500725 | MS.gene061424:CDS | 45.0% | |
| CTAACAGATCTTAGTGGTGG+TGG | + | chr7.1:75500712-75500731 | MS.gene061424:CDS | 45.0% | |
| GAAGTTCACGGAAACTTTGG+AGG | + | chr7.1:75501384-75501403 | MS.gene061424:CDS | 45.0% | |
| GAGCAGGTGACAATCTTATG+TGG | + | chr7.1:75500133-75500152 | MS.gene061424:CDS | 45.0% | |
| GCACTAACAGATCTTAGTGG+TGG | + | chr7.1:75500709-75500728 | MS.gene061424:CDS | 45.0% | |
| GCGGGAATATTGATGGAGAT+GGG | + | chr7.1:75501505-75501524 | MS.gene061424:CDS | 45.0% | |
| GGAGGTCAAAGCAACTTTCA+AGG | + | chr7.1:75501045-75501064 | MS.gene061424:CDS | 45.0% | |
| GTAGGAGATGGCCATATTGA+TGG | - | chr7.1:75500202-75500221 | None:intergenic | 45.0% | |
| GTTGTTCACCAAAATGGAGC+AGG | + | chr7.1:75500117-75500136 | MS.gene061424:CDS | 45.0% | |
| GTTTCTTCCTCGTGGAAATC+GGG | + | chr7.1:75500927-75500946 | MS.gene061424:CDS | 45.0% | |
| TTTCTTCCTCGTGGAAATCG+GGG | + | chr7.1:75500928-75500947 | MS.gene061424:CDS | 45.0% | |
| ! | GAAAATCCTAGTGGTGGTGT+AGG | + | chr7.1:75500997-75501016 | MS.gene061424:CDS | 45.0% |
| ! | GATTGTCACCTGCTCCATTT+TGG | - | chr7.1:75500128-75500147 | None:intergenic | 45.0% |
| ! | TGACCTCCAAAATAGCCTTG+AGG | - | chr7.1:75501033-75501052 | None:intergenic | 45.0% |
| !! | ATGGTGATGGGGTACATTCT+GGG | + | chr7.1:75500572-75500591 | MS.gene061424:CDS | 45.0% |
| !! | TCTCCTCAAGGCTATTTTGG+AGG | + | chr7.1:75501027-75501046 | MS.gene061424:CDS | 45.0% |
| !! | TGGTGGTGGTTGTGATAACT+TGG | + | chr7.1:75500726-75500745 | MS.gene061424:CDS | 45.0% |
| AACACACCTACACCACCACT+AGG | - | chr7.1:75501006-75501025 | None:intergenic | 50.0% | |
| AATATGGCCATCTCCTACGG+TGG | + | chr7.1:75500204-75500223 | MS.gene061424:CDS | 50.0% | |
| AGGCATGTGCGGTTGTGTTT+GGG | + | chr7.1:75500161-75500180 | MS.gene061424:CDS | 50.0% | |
| ATTAGGTCTTCAGCCACCGT+AGG | - | chr7.1:75500220-75500239 | None:intergenic | 50.0% | |
| GGCGGGAATATTGATGGAGA+TGG | + | chr7.1:75501504-75501523 | MS.gene061424:CDS | 50.0% | |
| GTAGGTGTGTTGTCTCCTCA+AGG | + | chr7.1:75501015-75501034 | MS.gene061424:CDS | 50.0% | |
| TTCTTCCTCGTGGAAATCGG+GGG | + | chr7.1:75500929-75500948 | MS.gene061424:CDS | 50.0% | |
| ! | ATGTGGCATTGAGGCATGTG+CGG | + | chr7.1:75500150-75500169 | MS.gene061424:CDS | 50.0% |
| ! | GTATCCCCATGCTACTTCCA+TGG | - | chr7.1:75500687-75500706 | None:intergenic | 50.0% |
| !! | GATATTGGTGCCAACGATGG+AGG | - | chr7.1:75500538-75500557 | None:intergenic | 50.0% |
| !! | GATGGTGATGGGGTACATTC+TGG | + | chr7.1:75500571-75500590 | MS.gene061424:CDS | 50.0% |
| !! | TGGTGATGGGGTACATTCTG+GGG | + | chr7.1:75500573-75500592 | MS.gene061424:CDS | 50.0% |
| AAATGCCCCCGATTTCCACG+AGG | - | chr7.1:75500937-75500956 | None:intergenic | 55.0% | |
| GAGGCATGTGCGGTTGTGTT+TGG | + | chr7.1:75500160-75500179 | MS.gene061424:CDS | 55.0% | |
| TCTTCAGCCACCGTAGGAGA+TGG | - | chr7.1:75500214-75500233 | None:intergenic | 55.0% | |
| !! | ATTGGTGCCAACGATGGAGG+AGG | - | chr7.1:75500535-75500554 | None:intergenic | 55.0% |
| TGTGCGGTTGTGTTTGGGCC+AGG | + | chr7.1:75500166-75500185 | MS.gene061424:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 75500028 | 75501602 | 75500028 | ID=MS.gene061424 |
| chr7.1 | mRNA | 75500028 | 75501602 | 75500028 | ID=MS.gene061424.t1;Parent=MS.gene061424 |
| chr7.1 | exon | 75500028 | 75501602 | 75500028 | ID=MS.gene061424.t1.exon1;Parent=MS.gene061424.t1 |
| chr7.1 | CDS | 75500028 | 75501602 | 75500028 | ID=cds.MS.gene061424.t1;Parent=MS.gene061424.t1 |
| Gene Sequence |
| Protein sequence |
