AlfalfaGEDB | MS.gene061624

M. sativa cultivar XinJiangDaYe / MS.gene061624

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061624.t1	XP_013460665.1	97.2	176	5	0	1	176	152	327	4.80E-87	330.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061624.t1	Q65XV8	64.3	154	54	1	1	153	226	379	2.9e-48	193.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061624.t1	A0A072V936	97.2	176	5	0	1	176	232	407	3.5e-87	330.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061624.t1	MTR_3g067795	97.159	176	5	0	1	176	152	327	1.28e-123	351
MS.gene061624.t1	MTR_3g067795	97.159	176	5	0	1	176	232	407	8.01e-123	352
MS.gene061624.t1	MTR_3g067795	97.516	161	4	0	1	161	152	312	3.57e-113	324
MS.gene061624.t1	MTR_3g067795	97.516	161	4	0	1	161	232	392	1.92e-112	325
MS.gene061624.t1	MTR_5g079840	71.942	139	39	0	1	139	231	369	1.31e-70	219
MS.gene061624.t1	MTR_2g096950	69.565	138	42	0	1	138	230	367	2.99e-67	210
MS.gene061624.t1	MTR_7g061660	58.580	169	64	1	1	169	229	391	5.37e-62	197
MS.gene061624.t1	MTR_2g096960	64.662	133	46	1	1	133	232	363	5.50e-57	183
MS.gene061624.t1	MTR_4g115120	60.000	135	54	0	1	135	264	398	2.17e-54	178
MS.gene061624.t1	MTR_2g041960	60.000	135	54	0	1	135	230	364	2.12e-53	177

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061624.t1	AT1G07570	65.714	140	48	1	140	108	247	3.83e-63	196
MS.gene061624.t1	AT1G07570	65.714	140	48	1	140	224	363	7.83e-62	196
MS.gene061624.t1	AT1G07570	65.714	140	48	1	140	224	363	7.83e-62	196
MS.gene061624.t1	AT1G07570	65.714	140	48	1	140	224	363	7.83e-62	196
MS.gene061624.t1	AT1G07570	65.714	140	48	1	140	235	374	1.35e-61	196
MS.gene061624.t1	AT2G28930	66.667	135	45	1	135	225	359	9.44e-61	194
MS.gene061624.t1	AT2G28930	66.667	135	45	1	135	236	370	1.08e-60	194
MS.gene061624.t1	AT2G28930	66.667	135	45	1	135	228	362	1.13e-60	194
MS.gene061624.t1	AT5G02290	60.769	130	51	1	130	224	353	9.35e-57	183
MS.gene061624.t1	AT5G02290	60.769	130	51	1	130	224	353	9.35e-57	183

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Find 38 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGTGGTTCAAAACAGCA+TGG	0.644648	3.4:+68608563	MS.gene061624:CDS
AACGTCGATGAATCTTTAAG+CGG	0.624665	3.4:+68608590	MS.gene061624:CDS
AAGAGTGATGTATACAGTTT+TGG	0.244902	3.4:+68608242	MS.gene061624:CDS
AATCATGCTCTCCAGACGGT+CGG	0.653401	3.4:-68608313	None:intergenic
AATCCAATGATAAAACAAAT+GGG	0.528287	3.4:+68608528	MS.gene061624:CDS
AATTTCTTCTACTGATGGAG+AGG	0.605820	3.4:-68608650	None:intergenic
ACAAGAATAATGGGCACCCC+TGG	0.528327	3.4:+68607733	MS.gene061624:CDS
ACATGACTCTTACCACCTTC+TGG	0.399568	3.4:-68607706	None:intergenic
ACGTAAGATTTCTCAAGTTA+TGG	0.368738	3.4:+68608370	MS.gene061624:CDS
ACTAAATCATGCTCTCCAGA+CGG	0.638040	3.4:-68608317	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGTAAGATTTCTCAAGTTA+TGG	+	chr3.4:68608370-68608389	MS.gene061624:CDS	30.0%
ATATAGACCAAACATTGAAG+AGG	+	chr3.4:68608478-68608497	MS.gene061624:CDS	30.0%
CATGTCTCTACAAGAATAAT+GGG	+	chr3.4:68607724-68607743	MS.gene061624:CDS	30.0%
CATTTCTACTAGGAAAAAGT+TGG	+	chr3.4:68607829-68607848	MS.gene061624:intron	30.0%
TCATGTCTCTACAAGAATAA+TGG	+	chr3.4:68607723-68607742	MS.gene061624:CDS	30.0%
AAACGATGGCGTACTAAATA+TGG	-	chr3.4:68607976-68607995	None:intergenic	35.0%
AACGTCGATGAATCTTTAAG+CGG	+	chr3.4:68608590-68608609	MS.gene061624:CDS	35.0%
AATTAGTTATGTTCGGCGTT+TGG	+	chr3.4:68608042-68608061	MS.gene061624:intron	35.0%
AGAGCATGATTTAGTTGCAT+GGG	+	chr3.4:68608325-68608344	MS.gene061624:CDS	35.0%
GACACTTCAGTTGTAAAACA+TGG	+	chr3.4:68608009-68608028	MS.gene061624:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	68607691	68608664	68607691	ID=MS.gene061624
chr3.4	mRNA	68607691	68608664	68607691	ID=MS.gene061624.t1;Parent=MS.gene061624
chr3.4	exon	68607691	68607784	68607691	ID=MS.gene061624.t1.exon1;Parent=MS.gene061624.t1
chr3.4	CDS	68607691	68607784	68607691	ID=cds.MS.gene061624.t1;Parent=MS.gene061624.t1
chr3.4	exon	68608228	68608664	68608228	ID=MS.gene061624.t1.exon2;Parent=MS.gene061624.t1
chr3.4	CDS	68608228	68608664	68608228	ID=cds.MS.gene061624.t1;Parent=MS.gene061624.t1

Gene Sequence

>MS.gene061624

ATGGCAAAAGATGGACCAGAAGGTGGTAAGAGTCATGTCTCTACAAGAATAATGGGCACCCCTGGCTATGCAGCTCCTGAGTATTTAGCCACAGGTATCTCAAAATTTATTCAAGACAGTATCAGCAAATTATTTTTGCATTTCTACTAGGAAAAAGTTGGTCTCTACATACATCCAGCTTCGTCTATCGTTTACGTTATTGTATTTAGACTTCAGATGCTGACTACATTTTAACTCAAATTCAACAAGCAATTTTTCAAAGCTTCGCTTGACAAAAACCCTCCATATTTAGTACGCCATCGTTTGAATTCACTGCCAGACACTTCAGTTGTAAAACATGGTTTGATCACAAATTAGTTATGTTCGGCGTTTGGTCCCTTAAATTGTTGCAGTCCCAAAGTCAATTTTCCCAAAAAGCTTTTATTTCTAGCTTTGTAATGAAATAAAATCAATTCTCAAAGTTATTAAAAATGTCACATATATATACACACTCAAAATCATTACTAACCTTTTTTTTCCATTGTCTTTTTTGTGAAGGTCACCTAACCAAAAAGAGTGATGTATACAGTTTTGGGGTCGTTCTCCTAGAAATTATGTCAGGCAAACGTGTATTGGATAAAAACCGACCGTCTGGAGAGCATGATTTAGTTGCATGGGCCAAGCCATTACTCATGAGCAAACGTAAGATTTCTCAAGTTATGGATGCTCGTATAGAAGGCCAATACTCGTCGCGTGAAGCAATTAAAGTAGCTCATGTTGCAATTCGATGTCTGTCGGCAGAACAAAAATATAGACCAAACATTGAAGAGGTGGTGAGATCGTTGGAACAACTTCAGGAATCCAATGATAAAACAAATGGGCATAGCTCAAGCAACAGTGGTTCAAAACAGCATGGAAAAAACGTCGATGAATCTTTAAGCGGAGAAGGTACTTCTAATATGAGTTCATCTGCTGCTTCACCTCTCCATCAGTAG

Protein sequence

>MS.gene061624.t1

MAKDGPEGGKSHVSTRIMGTPGYAAPEYLATGHLTKKSDVYSFGVVLLEIMSGKRVLDKNRPSGEHDLVAWAKPLLMSKRKISQVMDARIEGQYSSREAIKVAHVAIRCLSAEQKYRPNIEEVVRSLEQLQESNDKTNGHSSSNSGSKQHGKNVDESLSGEGTSNMSSSAASPLHQ