AlfalfaGEDB | MS.gene061696

M. sativa cultivar XinJiangDaYe / MS.gene061696

KEGG: K09060
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24 PF07777.14

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061696.t1	XP_013466739.1	93.2	308	19	1	1	308	1	306	4.40E-144	520.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061696.t1	A0A072VRN1	93.2	308	19	1	1	308	1	306	3.2e-144	520.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene061696.t1	TF	bZIP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061696.t1	MTR_1g034500	93.182	308	19	1	1	308	1	306	0.0	595
MS.gene061696.t1	MTR_2g045670	64.309	311	60	8	1	309	20	281	8.67e-124	355
MS.gene061696.t1	MTR_2g045700	64.309	311	69	9	1	309	1	271	1.20e-119	345
MS.gene061696.t1	MTR_2g045630	66.129	248	57	7	76	308	42	277	1.34e-97	289
MS.gene061696.t1	MTR_8g077950	48.837	86	42	1	220	303	252	337	2.29e-20	90.1
MS.gene061696.t1	MTR_8g077950	48.837	86	42	1	220	303	194	279	2.46e-20	89.0
MS.gene061696.t1	MTR_8g077950	48.837	86	42	1	220	303	254	339	2.53e-20	90.1
MS.gene061696.t1	MTR_5g028850	35.354	99	60	1	198	296	286	380	4.58e-12	66.6
MS.gene061696.t1	MTR_5g028850	35.354	99	60	1	198	296	284	378	5.47e-12	66.2
MS.gene061696.t1	MTR_8g070820	24.746	295	174	10	28	291	71	348	3.10e-11	63.9

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061696.t1	AT4G36730	25.000	304	203	6	12	303	9	299	2.46e-22	95.1
MS.gene061696.t1	AT4G36730	25.649	308	198	8	12	303	9	301	2.06e-21	92.8
MS.gene061696.t1	AT2G35530	41.176	68	40	0	224	291	305	372	1.17e-12	68.6

Showing 1 to 3 of 3 entries

Previous1Next

Find 57 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGCTTATTACAATCC+TGG	0.410680	1.3:+19229387	MS.gene061696:intron
AAAGTATTTGGAGTAGACCC+AGG	0.610691	1.3:-19229405	None:intergenic
AAATTCTGAGCCAGACCAGA+TGG	0.553977	1.3:-19230647	None:intergenic
AACAACTATGTGGGGTTTAT+TGG	0.126290	1.3:-19229647	None:intergenic
AACAGGCTTATTACAATCCT+GGG	0.495397	1.3:+19229388	MS.gene061696:intron
AACATCAACGTCAATAACGT+CGG	0.681325	1.3:-19230696	None:intergenic
AACGCTTGCTAAGCTTTCTG+AGG	0.605311	1.3:+19233001	MS.gene061696:CDS
AAGATCAAAGATAAAGAAAC+AGG	0.437513	1.3:+19231893	MS.gene061696:CDS
AAGGAAGAATCCACTTCGTT+TGG	0.374827	1.3:+19229068	MS.gene061696:CDS
AAGGAGCAGCTGCAAGTGGA+TGG	0.564358	1.3:-19229434	None:intergenic

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTTATGTTGTAACACG+AGG	-	chr1.3:19231150-19231169	None:intergenic	30.0%
AAAGCACATAACAAAACTCT+GGG	+	chr1.3:19232359-19232378	MS.gene061696:intron	30.0%
AACTCATACACAATTCATCA+TGG	-	chr1.3:19229868-19229887	None:intergenic	30.0%
AAGAAATGAAAACTGTTAGG+AGG	+	chr1.3:19233257-19233276	MS.gene061696:intron	30.0%
AAGTAAAAGGAGAATGAACT+AGG	+	chr1.3:19234006-19234025	MS.gene061696:intron	30.0%
AATGCTAGATTGAAAAATGG+TGG	-	chr1.3:19231692-19231711	None:intergenic	30.0%
AATGGCAGTTCATTCAAATT+CGG	-	chr1.3:19230966-19230985	None:intergenic	30.0%
AGGAAGAAATGAAAACTGTT+AGG	+	chr1.3:19233254-19233273	MS.gene061696:intron	30.0%
AGGGGAATAAGAATTGAATA+CGG	-	chr1.3:19234086-19234105	None:intergenic	30.0%
AGTAAGTAAATTCCTTCTCA+AGG	+	chr1.3:19231742-19231761	MS.gene061696:intron	30.0%

Showing 1 to 10 of 358 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	19229062	19234940	19229062	ID=MS.gene061696
chr1.3	mRNA	19229062	19234940	19229062	ID=MS.gene061696.t1;Parent=MS.gene061696
chr1.3	exon	19229062	19229124	19229062	ID=MS.gene061696.t1.exon1;Parent=MS.gene061696.t1
chr1.3	CDS	19229062	19229124	19229062	ID=cds.MS.gene061696.t1;Parent=MS.gene061696.t1
chr1.3	exon	19229230	19229277	19229230	ID=MS.gene061696.t1.exon2;Parent=MS.gene061696.t1
chr1.3	CDS	19229230	19229277	19229230	ID=cds.MS.gene061696.t1;Parent=MS.gene061696.t1
chr1.3	exon	19229393	19229488	19229393	ID=MS.gene061696.t1.exon3;Parent=MS.gene061696.t1
chr1.3	CDS	19229393	19229488	19229393	ID=cds.MS.gene061696.t1;Parent=MS.gene061696.t1
chr1.3	exon	19229595	19229672	19229595	ID=MS.gene061696.t1.exon4;Parent=MS.gene061696.t1
chr1.3	CDS	19229595	19229672	19229595	ID=cds.MS.gene061696.t1;Parent=MS.gene061696.t1
chr1.3	exon	19229926	19230098	19229926	ID=MS.gene061696.t1.exon5;Parent=MS.gene061696.t1
chr1.3	CDS	19229926	19230098	19229926	ID=cds.MS.gene061696.t1;Parent=MS.gene061696.t1
chr1.3	exon	19230199	19230253	19230199	ID=MS.gene061696.t1.exon6;Parent=MS.gene061696.t1
chr1.3	CDS	19230199	19230253	19230199	ID=cds.MS.gene061696.t1;Parent=MS.gene061696.t1
chr1.3	exon	19230443	19230491	19230443	ID=MS.gene061696.t1.exon7;Parent=MS.gene061696.t1
chr1.3	CDS	19230443	19230491	19230443	ID=cds.MS.gene061696.t1;Parent=MS.gene061696.t1
chr1.3	exon	19230642	19230739	19230642	ID=MS.gene061696.t1.exon8;Parent=MS.gene061696.t1
chr1.3	CDS	19230642	19230739	19230642	ID=cds.MS.gene061696.t1;Parent=MS.gene061696.t1
chr1.3	exon	19231837	19231914	19231837	ID=MS.gene061696.t1.exon9;Parent=MS.gene061696.t1
chr1.3	CDS	19231837	19231914	19231837	ID=cds.MS.gene061696.t1;Parent=MS.gene061696.t1
chr1.3	exon	19232936	19233061	19232936	ID=MS.gene061696.t1.exon10;Parent=MS.gene061696.t1
chr1.3	CDS	19232936	19233061	19232936	ID=cds.MS.gene061696.t1;Parent=MS.gene061696.t1
chr1.3	exon	19234875	19234940	19234875	ID=MS.gene061696.t1.exon11;Parent=MS.gene061696.t1
chr1.3	CDS	19234875	19234940	19234875	ID=cds.MS.gene061696.t1;Parent=MS.gene061696.t1

Gene Sequence

>MS.gene061696

ATGGGGAAGGAAGAATCCACTTCGTTTGGAAGACCTTACAATTTCACGGTGCCTCAAGATGATGTCAGTAAATCATGTTATGGCTATCTTAATTAATTTTCTTTATGTGCAATGCAATCTTCTTATATCTGATATGCTCTATTTTACTTTGATTTTTCTCTCTAACAGCAAACTCCAAACAAACCTATGTTACCACATTGGACTACAGCTATGCAGGTGTAAAACATTTTCTACTCTGAACCAATTTGTGATGGTATCTTGGTCACGTAACTTCGTCTTTTACATAGAGAAAAAAACTGACTCATTTTATCTTATTTTAAATTTCAAACAGGCTTATTACAATCCTGGGTCTACTCCAAATACTTTTTATAACCATCCACTTGCAGCTGCTCCTTACTTGTATCATCAGTACATCTTGCAAAATCAGGTAATGATATACATATTACTGCTTTGTACGGCATGCTTCTTTCTTAGACTAGGACAGATGGACCAGTCATCTGCTTCACTTTCACATTCTTTGTTGTTTGGTGCAGGCAAACAATGCACTACTTCAACGTGATGCTCTACATGGTCCCGTGAGGCTGTCCAATAAACCCCACATAGTTGTTGAGGTGAGCCTAAACCTTTCAATAGATATATTCATTGCGCTTCATTAATTTATTTTTTCTATCATAATGTCTATGAAATTCATTTTATGGTTAGTATATATTTAGTGAAATTTTCATATTTCTTTAGGGTGGGGTTGGGGTTACCAATTACTAGTGGAATGATTTAATGAACATTTCTTTATCTTAGAACAACTTCCATGATGAATTGTGTATGAGTTTGTATATTCATATATGAATGTTTATGCATTTTGGTCAGGATGCTGCAAAGGCTTTTTCAGAAATGGTACACAGAAATTTTGGCCAAAAAAACCAAGATTTCAACTTATTTGCTAGAAACTCACAACCTGTAAGTTTAATGACTGGTGAATCAAGAGAATTTGGAAACCAGTCTTCTGCACCCAAAAATGACAGGGATGGAACCTCAATGAGGTACAATTTGTTCTTGTTCTTCGGCTAAATTTGTTGATAGCAATTTCCCAAGTCTGAATAAAAAATTATGTATTACACAATACATATTATGTGTGCGCAGTGCAGCAAGTGGAAGCAAGAGATCACCAGAGGGAGATCAAAATGACAGTAACAAAGTATGTTGATCGTTTAATTTTTCATATAAATATGCGGTTGATGAATGTTAATGTGTTGTGCCACTGTTATGTTTCGAAGTTAGAACACTTAAGAAATGAGTAGTTTATTAAGGCTTTAAAATTATTCTTTAGTACAGGTCATATGGTTAAATTCTTCGAAAAAGTCTAATTACATCCTTTCTGTGGCAGGATTCTCCTTTAACTAAGAAGCATAAATCTAACATGATTACTGCGGATGGTAAGATTATGGTTTTTCCTTTTGATTATCTTATAATAAAAAATCATGTTTTATTATGATCTGTAATTTGAATTTCAGAAGGTGAATAGTTCCAAAGACATGAACTGCAGCTCATGTGACTTAACAGTCTTGCATCTTGTTTCCTTGTAGAAAATCCATCTGGTCTGGCTCAGAATTTAGGGACAGTCGTCAAGGAATCTGATGCCGACGTTATTGACGTTGATGTTGATGCTCAACTTAAAAATATGGTATTATAACTTCTTTGCTTTTTCGTTGCATGTTTGAAAAGTTTTTTTTGTGGATTAGCTAAACAAGAAGAATAATCAGTTTTTTAGTAAGATAACTGGTAAAATCTCTTTTGAATCATTATGATATGCACACACTTGGAAAATCTCACTTTAACATGTTCAATCATTCACACATGTTATAGGCAGTGTTGTTAAATAGATGCTCTGTAGCAATGTTGTGTAGCCGAATTTGAATGAACTGCCATTTTGTGTCATCTGCGATTGAAAACACTAGTTATAGGCACTCTTTGATATTGGAATTAACTCAATCTCATAAGACCGACTCGTAAGGTAAGGAATGTCCTAGCTTTATAAGGACATATTAAGCACTAATGTAGGACTCGGTCTTTTCCAATAAGTCCACACTACCTCGTGTTACAACATAACTTTTTTAGAACTATAAAACAGACACAAACATGTAGACCAATAATAATTTAATAAAATAGAAGTGATGGAATGTAACCATATGGGTGTTAGTTTCGTACAAGTGTGTCACTGACAAATGTCAAACACTCGAACACGCCTTCAATTTGAAGCGTCGATGTAACATAGATTTAGAAAAATGGAGGTCGCAAAAATAAAACTCTAAGGCTGGATTCTCTTGAAAGCTTAAGCTATTATACCCACATGAGATGCCCCATCGACACATTGTATGTATAGGATTTAAATTGTTCATTTTCCATCTCGAATCTTGCTAGATTTGCTTAAATTTGTTGGCTAGCATAGTTGCACCATCTACCTAGTCCTATAAAAATATCTGTATGATCCACGACGCCATGCCAAATTGGCAATAGTTATAGAATGTTTTCCTGCATGCGCAACTGATCTTGTAAGAACTTAAATTTCAACTTGTCTAAAAAAACTATTTTGTTTTAGTTTGCATTTTTTTTTCTTTAAGCATTTCATGCTACCACCATTTTTCAATCTAGCATTCTAGCTAAATATGTATGGGGAATACATTTCAGTAAGTAAATTCCTTCTCAAGGTTGCTAAGTTTGATTCATAACTATCTGGCACAGAGTCTAGTATTTCTTATTTAGCTGCATTTCTTTTGACAGGAAGGTGATGACATAAGAAGAGAAAGAAAAAGATTGTCAAACAGGAAATCAGCTAAAAGATCAAAGATAAAGAAACAGGTACATACTAGACCATGACTGGTGCATTGCAGCAGGTTTTGTGGTTCCGTTATACATAGTTATCCTCATAATTACAGAAAATATTGAAATGTATATAAATTCGACAATGGGTTGGTTGCACATGATTAAAATGTAAAAAGAAAATGATGGTGGTTCATTTTCATTATTGGATCTCATCGTTTAGTCCCAAAAAGTTTTTTTCAACTCCGTACTCTAATTTTATTTAATAAATTATTAAATGTTATGATGAGCTAATTAACTTATTAAGTAATTAAGATAACAAAACAGCTGTGTTTGGTTGATGTCCTATTTTTTCTACTTGACATTTTATCACTTTCTTGTTTTTATTTTCCTTTGCTTTTTCTTGTGACCTTATGTCCTAAACATGCATTTAAATGGCAGTGACAAATACAAAATTAATCACTTTGCAACCACCTATTTATTAAAGCACATAACAAAACTCTGGGAGCTAAGCTGTATTTTAGACAGTAAAGATAGATATACTGATAACTATTGAGAGCTAGATAGCAAAATATCAAAGAAACGATGTTCTGAGGTCTTAGTTTCCTTCATTGATGATCAGTTTCAATGACATGTTTATATTAACAGTATAATTTTTTTAAAAACATAAACTAATAGTTTCTTTATTATCGACTTATATTCTCAACAATCTTTCCCTTTATTTGGAACATGATTGTAGGGTACATGATTATGATTATACATGGTAGGGCTTTATGTCATCGATTGATCCATGTAATTGAATCCACCTAGTGGTAAAAGAGCAGACTTTTATTGTTATTGTTGTTGTATGATCATAGGATCTTGGCTTCCCAAACAGCCAAATATTATCTTCCATTACTATTGTGGAAGTTGAAAATTTTACTTGTGCTTCTCGTTGACGTTTCTTACATCTCTTGTGAATTTGTTATAGTTTCCTCCTGGATTACATAATTTATAAAACTTTATCATGTTCTTGAACTTTGTATTTCATTTGATGTTCTCATTATTTGTGCCTTGCCAGCAAGAATGTGAAGAGCTATATAATAAGATAGACACTCTTAAGGATGAAAATTCTGTCCTAGCACAAACGCTTGCTAAGCTTTCTGAGGAATGTCTGGAGCTCGCCAATGAAAATGATTCCATTGAGGTCCAGCATTTTAACTCCCCTCTTTATTTGTTGAGTTTTATATCATTCATTCAACTAAGATACTTGTTTGGTTTGAGAAAATATTTTCTGTTTTTGCTTTTCATTAGAAAAATGCCATCTTGTTTTCTAATATTTGCATGAGAAACAATTAAATAAACTAAAAAACTAGGTGATACTTTCGTAGTTAATAAAAGGAAGAAATGAAAACTGTTAGGAGGTCAGGTGGAGTCGAAAATTGAAGATGAATCCCGTCAATTGGCAAAGAGGAACCCACAGTGGGCTTAACACCATATATCATCTCAAAATCTTAAGGCAATTATTATTAATGAGTGGAATTCACGTCGTTACTGGTTACCGCCCAAGAACCAACTCTTGGTCAATGCTCCACAATCTTTGTTTTTCTATTCTCTCCCTCTCAACCCTTGTTATTTATAGACATCATGACTCACTTGTCTAACAATTTCCAATTAACCAACTAATTGGTAACTAACTCATTAGGTCAAGTACCAACAATCCCTTTAGGTGGGTTGTATTGTCAAGTACTGAGAATACACCCCAAAAAACATTCACCCTGTCCTCAAATTGAACCATAAACATAACCTCAAAACAATCCCTCTAGGGTGCCATTGTTTACTGTTCCTAATTCAGCAGAGTCAAATGAGAGACTCCTTAGACCCTTTTACTGTCAATCCCTCAAAAGTCTCATCCCTATCCATCAAAAGACCAACTTGTATTCTCTGCATGGATGTCTAGAAATTTGTGAATTTTGATACAGTAAAACTCAATTTTAAAATAATTAGCAGCAACACACGATGGAATTATAAATCCTCTCTACCCCGTTTTAGTATTCATTAAAGAAGGATCGCTAGAGAAGATGCCGTGACATGACAATCCTCAGATACATTGCGTCAAATGCAGTACTCAAACAGAAAAGGAACTTATATAAGTAAAAGGAGAATGAACTAGGAACCACATACTCTCACTAACTCATTCTACGGTTCTACCTACATTTTGTTATATCCCGTATTCAATTCTTATTCCCCTTCTATATAAAATCGCACATCATGTTGTTCAGGACTTTCTTGTTAAATGGGCAACTTCATTACATATTACTCACATTCACACCTCTCCTCACACACTCCCTACTCCCACTTGTCCATCTGATGTGCCTAACTTGGCTACCTGCACTTTGCTGACATGGCTCGTCTCTGAGTTAATTGTTTTCCTGTGCAATTTTTTTCCCCTCCAATAGTATATCATAAATAAATTATATAGCAGGTAACCCACCTTTGAGTATGATACCACCGCCACTTAGGTAGCGTTTGGCCCGGCTTATTTTAGGCTTTCCTACTCTGTAAAAGGAGAAGCTCGGCCAAACATATTTTTTAAGAAGGTCTTGGTAGTAAAAGTTGCTTATTTTTCTTGTGTAAGAAGGTTGTTATGCAAGTCGATAGGAACTGATTCTGAATACAGAAAAAAAGTAGTATAAATTGATAGAAAAGTCTATATATAATAACTGAATCTCTCCCATTCGAAGTTTTTTTTTCCAAATAAAGAAGTAGGCCTCTCCAATCTCTTCTACCTATTATTATGATATCTCTTTGTAACAAACTTTCTAATTAGGTAGTACAGCTAATTATCTAAGTTACCTAACATGAAGATAGCCAAGTTAATTTTGTTAGATGACAATTATTTATTCAAAGCTTTTGATATTGGTTCATGAAGAAGTTAGTTCTGAGTATTGTATTGTGGTTCTCAATGCTCTATTTTCAAATATTGCTACTAATTTGAGTGTAATTTGGTGGTGGAACAGGAAGAGCTAGTTAAGAAGTATGGACCAGAATCAATTGCAGATCTATTGCTCATGAAGCCTACTTGA

Protein sequence

>MS.gene061696.t1

MGKEESTSFGRPYNFTVPQDDQTPNKPMLPHWTTAMQAYYNPGSTPNTFYNHPLAAAPYLYHQYILQNQANNALLQRDALHGPVRLSNKPHIVVEDAAKAFSEMVHRNFGQKNQDFNLFARNSQPVSLMTGESREFGNQSSAPKNDRDGTSMSAASGSKRSPEGDQNDSNKDSPLTKKHKSNMITADENPSGLAQNLGTVVKESDADVIDVDVDAQLKNMEGDDIRRERKRLSNRKSAKRSKIKKQQECEELYNKIDTLKDENSVLAQTLAKLSEECLELANENDSIEEELVKKYGPESIADLLLMKPT