AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061708

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061708.t1 MTR_1g007020 86.585 164 22 0 3 166 227 390 6.12e-91 282
MS.gene061708.t1 MTR_1g040935 69.481 154 42 2 13 165 194 343 6.27e-59 197
MS.gene061708.t1 MTR_5g048840 86.486 111 15 0 32 142 183 293 1.98e-56 188
MS.gene061708.t1 MTR_1g041005 71.429 112 32 0 14 125 203 314 3.71e-45 159
MS.gene061708.t1 MTR_2g043290 59.740 154 21 2 12 165 139 251 1.73e-37 138
MS.gene061708.t1 MTR_7g060590 46.622 148 79 0 18 165 184 331 2.60e-35 134
MS.gene061708.t1 MTR_2g032880 39.881 168 80 2 12 163 281 443 3.21e-25 108
MS.gene061708.t1 MTR_1g047060 50.515 97 41 3 308 404 3 92 9.55e-21 87.0
MS.gene061708.t1 MTR_6g471850 48.936 94 37 1 110 203 413 495 3.76e-19 90.1
MS.gene061708.t1 MTR_2g438050 55.844 77 30 2 90 165 160 233 1.92e-18 85.1
MS.gene061708.t1 MTR_6g477900 32.500 160 86 7 200 345 6 157 1.93e-17 81.6
MS.gene061708.t1 MTR_4g094302 32.086 187 102 9 200 372 11 186 2.18e-17 80.5
MS.gene061708.t1 MTR_4g101680 33.333 159 83 7 200 344 7 156 8.39e-17 82.0
MS.gene061708.t1 MTR_1g096430 31.481 162 91 6 197 344 1 156 1.86e-16 80.5
MS.gene061708.t1 MTR_3g046580 70.588 51 15 0 110 160 308 358 2.60e-16 80.9
MS.gene061708.t1 MTR_5g012080 32.184 174 93 8 200 355 7 173 2.69e-16 80.1
MS.gene061708.t1 MTR_8g076110 32.692 156 88 5 200 344 6 155 6.65e-16 78.6
MS.gene061708.t1 MTR_4g036030 31.410 156 90 5 200 344 7 156 2.98e-15 77.0
MS.gene061708.t1 MTR_4g094302 34.109 129 76 6 200 328 11 130 4.14e-15 73.2
MS.gene061708.t1 MTR_8g023900 29.697 165 95 7 193 344 5 161 4.32e-15 77.4
MS.gene061708.t1 MTR_8g023900 26.047 215 125 9 179 380 181 374 8.02e-12 67.4
MS.gene061708.t1 MTR_2g080010 30.357 168 101 6 200 360 15 173 7.21e-15 75.9
MS.gene061708.t1 MTR_2g093810 32.738 168 87 8 200 350 14 172 8.77e-15 75.5
MS.gene061708.t1 MTR_3g093050 30.000 170 87 9 195 345 17 173 9.92e-15 76.6
MS.gene061708.t1 MTR_5g069030 30.588 170 86 9 195 345 20 176 1.03e-14 76.6
MS.gene061708.t1 MTR_3g093050 30.000 170 87 9 195 345 17 173 1.26e-14 76.6
MS.gene061708.t1 MTR_7g105170 29.240 171 99 8 197 348 1 168 1.94e-14 73.6
MS.gene061708.t1 MTR_7g100990 33.962 159 81 8 200 341 11 162 5.25e-14 73.2
MS.gene061708.t1 MTR_4g089135 33.333 144 80 5 200 334 15 151 7.51e-14 72.8
MS.gene061708.t1 MTR_8g059170 30.864 162 86 7 200 345 14 165 3.32e-13 70.9
MS.gene061708.t1 MTR_2g079990 31.875 160 85 9 200 345 16 165 4.78e-13 70.5
MS.gene061708.t1 MTR_8g023930 28.387 155 98 5 198 344 22 171 6.07e-13 70.9
MS.gene061708.t1 MTR_3g109340 30.189 159 92 6 198 344 20 171 7.78e-13 70.1
MS.gene061708.t1 MTR_3g088110 29.814 161 87 7 200 344 7 157 1.03e-12 68.9
MS.gene061708.t1 MTR_3g096140 29.814 161 89 7 199 344 6 157 1.06e-12 68.6
MS.gene061708.t1 MTR_7g097090 33.766 154 82 8 200 342 10 154 1.45e-12 68.6
MS.gene061708.t1 MTR_1g090720 31.515 165 87 6 200 345 42 199 2.89e-12 68.9
MS.gene061708.t1 MTR_3g096140 29.814 161 89 7 199 344 6 157 3.02e-12 68.2
MS.gene061708.t1 MTR_4g098630 30.435 161 91 9 200 345 6 160 7.37e-12 66.6
MS.gene061708.t1 MTR_4g108760 31.250 160 86 8 200 344 17 167 7.74e-12 67.0
MS.gene061708.t1 MTR_1g097300 34.074 135 72 5 202 328 21 146 8.16e-12 67.4
MS.gene061708.t1 MTR_7g005280 29.630 162 99 6 200 353 15 169 8.19e-12 65.5
MS.gene061708.t1 MTR_7g085220 27.168 173 91 8 200 346 8 171 8.92e-12 66.6
MS.gene061708.t1 MTR_2g079990 33.094 139 76 7 200 331 16 144 1.34e-11 66.2
MS.gene061708.t1 MTR_8g023840 29.032 155 87 7 200 341 11 155 1.38e-11 66.2
MS.gene061708.t1 MTR_0106s0030 48.611 72 35 1 94 163 90 161 3.33e-11 64.7
MS.gene061708.t1 MTR_8g093580 28.743 167 93 7 195 345 1 157 3.84e-11 65.5
MS.gene061708.t1 MTR_3g098810 27.273 176 100 7 191 346 5 172 5.99e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061708.t1 AT4G36160 31.977 172 98 6 200 358 14 179 1.67e-18 87.4
MS.gene061708.t1 AT4G36160 31.977 172 98 6 200 358 10 175 1.67e-18 87.4
MS.gene061708.t1 AT4G36160 31.977 172 98 6 200 358 10 175 1.67e-18 87.4
MS.gene061708.t1 AT2G18060 32.164 171 98 6 200 358 9 173 3.77e-18 85.9
MS.gene061708.t1 AT2G18060 32.164 171 98 6 200 358 9 173 3.77e-18 85.9
MS.gene061708.t1 AT5G62380 30.769 195 106 7 200 381 7 185 7.22e-18 85.1
MS.gene061708.t1 AT5G62380 30.769 195 106 7 200 381 7 185 7.22e-18 85.1
MS.gene061708.t1 AT3G17730 32.500 160 86 8 200 345 6 157 2.10e-17 82.0
MS.gene061708.t1 AT1G71930 31.410 156 90 5 200 344 9 158 1.78e-16 80.5
MS.gene061708.t1 AT1G71930 31.410 156 90 5 200 344 9 158 1.78e-16 80.5
MS.gene061708.t1 AT2G24430 33.962 159 86 6 198 344 14 165 3.49e-16 79.7
MS.gene061708.t1 AT2G24430 33.962 159 86 6 198 344 14 165 3.49e-16 79.7
MS.gene061708.t1 AT1G12260 32.500 160 85 7 200 345 7 157 7.62e-16 79.0
MS.gene061708.t1 AT1G76420 33.951 162 78 9 200 344 22 171 1.02e-15 78.6
MS.gene061708.t1 AT1G12260 32.704 159 84 7 200 344 7 156 1.13e-15 79.0
MS.gene061708.t1 AT4G17980 29.412 170 92 6 195 345 1 161 2.02e-15 76.6
MS.gene061708.t1 AT2G27300 28.105 153 100 4 193 341 7 153 2.40e-15 77.4
MS.gene061708.t1 AT4G17980 29.412 170 92 6 195 345 1 161 3.40e-15 76.3
MS.gene061708.t1 AT5G64530 31.443 194 99 7 200 372 3 183 3.54e-15 73.9
MS.gene061708.t1 AT3G10490 31.250 160 89 6 200 345 27 179 3.71e-15 75.1
MS.gene061708.t1 AT1G62700 31.447 159 86 6 200 344 7 156 4.13e-15 77.0
MS.gene061708.t1 AT1G62700 31.447 159 86 6 200 344 7 156 4.13e-15 77.0
MS.gene061708.t1 AT1G54330 30.769 156 91 6 200 345 6 154 6.55e-15 75.5
MS.gene061708.t1 AT4G27410 29.213 178 87 8 200 347 14 182 3.08e-14 73.9
MS.gene061708.t1 AT5G46590 31.847 157 85 7 200 341 6 155 1.00e-13 72.0
MS.gene061708.t1 AT1G32510 29.341 167 92 7 199 345 5 165 1.33e-13 71.6
MS.gene061708.t1 AT3G49530 27.381 168 93 9 195 344 8 164 1.63e-13 72.4
MS.gene061708.t1 AT3G18400 32.484 157 85 9 200 344 5 152 2.10e-13 71.2
MS.gene061708.t1 AT3G49530 27.219 169 94 9 195 345 8 165 2.72e-13 72.0
MS.gene061708.t1 AT5G64530 35.659 129 70 5 200 328 3 118 4.00e-13 67.4
MS.gene061708.t1 AT5G22290 30.405 148 86 7 202 341 23 161 4.89e-13 70.5
MS.gene061708.t1 AT5G39610 31.677 161 86 8 200 345 20 171 5.29e-13 69.7
MS.gene061708.t1 AT1G26870 29.412 170 89 7 198 344 14 175 5.31e-13 70.9
MS.gene061708.t1 AT5G04395 32.886 149 79 6 200 331 28 172 5.92e-13 67.8
MS.gene061708.t1 AT3G15500 29.560 159 90 7 200 345 14 163 9.15e-13 69.3
MS.gene061708.t1 AT5G61430 31.288 163 88 7 200 347 16 169 9.86e-13 69.3
MS.gene061708.t1 AT4G35580 27.419 186 105 8 194 359 3 178 1.36e-12 70.1
MS.gene061708.t1 AT5G13180 29.677 155 95 5 200 346 14 162 1.52e-12 67.8
MS.gene061708.t1 AT4G35580 27.419 186 105 8 194 359 3 178 1.56e-12 69.7
MS.gene061708.t1 AT2G43000 29.936 157 87 7 202 344 20 167 1.59e-12 68.2
MS.gene061708.t1 AT4G35580 27.419 186 105 8 194 359 3 178 1.62e-12 69.7
MS.gene061708.t1 AT3G29035 34.074 135 74 6 200 328 24 149 2.16e-12 68.2
MS.gene061708.t1 AT1G52890 30.061 163 84 7 200 345 14 163 3.15e-12 67.8
MS.gene061708.t1 AT5G07680 31.288 163 88 7 200 347 17 170 6.25e-12 67.0
MS.gene061708.t1 AT5G46590 30.556 144 86 6 195 331 1 137 6.37e-12 66.2
MS.gene061708.t1 AT5G07680 31.288 163 88 7 200 347 3 156 6.76e-12 66.6
MS.gene061708.t1 AT4G10350 31.410 156 88 7 200 342 9 158 7.84e-12 66.6
MS.gene061708.t1 AT3G10500 30.380 158 90 6 200 344 9 159 1.02e-11 67.4
MS.gene061708.t1 AT2G33480 31.613 155 89 7 200 346 15 160 1.41e-11 65.1
MS.gene061708.t1 AT5G50820 33.088 136 76 5 200 331 17 141 1.68e-11 63.5
MS.gene061708.t1 AT1G32870 32.143 140 84 5 193 328 3 135 7.56e-11 64.7
MS.gene061708.t1 AT1G32870 32.143 140 84 5 193 328 3 135 7.76e-11 64.3

Find 101 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAAAATTGGATAGGTTT+TGG 0.218964 1.3:-19382188 None:intergenic
CCATGGTTCTGACTTGATTA+AGG 0.237815 1.3:+19382324 MS.gene061708:CDS
GGCATTGTAAGACTGGATTT+TGG 0.240614 1.3:+19382458 MS.gene061708:CDS
TTTGAAACTACCTCTTTAAA+TGG 0.247168 1.3:-19380478 None:intergenic
CCTCCTCAGCTCATCACTTT+TGG 0.293515 1.3:-19382437 None:intergenic
ATAGCAGGGCAATGAGAAAT+AGG 0.309353 1.3:-19380235 None:intergenic
CCCTCTTAGAACTCAGTTGA+TGG 0.321964 1.3:+19383918 MS.gene061708:intron
ACAATTGTCGGTGTTACAAC+TGG 0.334149 1.3:-19380205 None:intergenic
ACTGAAAGGAAAGAGAAAAT+TGG 0.337994 1.3:-19382199 None:intergenic
TTCACGCCTCAATGATAATA+AGG 0.346795 1.3:+19383982 MS.gene061708:CDS
ACTTGAGGCCGCATCTTTAG+AGG 0.348047 1.3:+19380114 MS.gene061708:CDS
TGAGATAGCTAGAAATGATT+TGG 0.355683 1.3:+19380300 MS.gene061708:CDS
AACTGAAATATCTGAATTTG+TGG 0.363763 1.3:-19380083 None:intergenic
CCTTGTGTGAGGGAAGAAAA+AGG 0.370691 1.3:-19382395 None:intergenic
TAATATTGTCCCCTTGGGAT+TGG 0.400172 1.3:-19380162 None:intergenic
GCAATTCAAACGGATCATAT+TGG 0.403266 1.3:-19382360 None:intergenic
AATATTGTCCCCTTGGGATT+GGG 0.404675 1.3:-19380161 None:intergenic
GTCAATAATATTGTCCCCTT+GGG 0.408658 1.3:-19380167 None:intergenic
AGGTGATGCATTGCATTTCA+TGG 0.410069 1.3:+19382932 MS.gene061708:CDS
GTGCAAAATTGTCTTTCATA+AGG 0.412624 1.3:-19384108 None:intergenic
GTGGATTGGTGTTGCGGATG+TGG 0.414172 1.3:-19380064 None:intergenic
CGCAGCTTTGGAGGAGGAAA+TGG 0.414723 1.3:+19380033 MS.gene061708:CDS
TTCTGCAGCACCGGGTCTAC+AGG 0.415655 1.3:-19380403 None:intergenic
CTCTTTCCTTTCAGTAGCAA+TGG 0.416474 1.3:+19382207 MS.gene061708:CDS
AGTCCAGATCCATCCCTCTA+TGG 0.420396 1.3:-19382776 None:intergenic
CTCAACAACTTAAGTGGGTT+GGG 0.422382 1.3:+19382877 MS.gene061708:CDS
AAAGTATTATTAGTAATAGC+AGG 0.439996 1.3:-19380250 None:intergenic
CGTTTGAATTGCATCTTGCT+CGG 0.448065 1.3:+19382371 MS.gene061708:CDS
AAAACACGGCAAACAACAAA+AGG 0.449123 1.3:-19382747 None:intergenic
TTTAGAGAGGATAGTGCAAA+TGG 0.451845 1.3:-19382155 None:intergenic
TGGATCTGGACTCTGAATTG+TGG 0.459225 1.3:+19382787 MS.gene061708:CDS
CAAACGGATCATATTGGTAC+AGG 0.462188 1.3:-19382354 None:intergenic
AATTGAGGCCGCAGCTTTGG+AGG 0.463317 1.3:+19380024 MS.gene061708:CDS
CTGAGGAGGCATTGTAAGAC+TGG 0.469451 1.3:+19382451 MS.gene061708:CDS
CCGCCATAGAGGGATGGATC+TGG 0.473585 1.3:+19382773 MS.gene061708:CDS
GGATCTGGACTCTGAATTGT+GGG 0.473825 1.3:+19382788 MS.gene061708:CDS
TCTAAGTCTTTCTGCAGCAC+CGG 0.476802 1.3:-19380412 None:intergenic
GGTCAATAATATTGTCCCCT+TGG 0.486795 1.3:-19380168 None:intergenic
GGGTCTACAGGAGCACCATC+TGG 0.488183 1.3:-19380391 None:intergenic
AAGGAACTCAACAACTTAAG+TGG 0.495704 1.3:+19382871 MS.gene061708:CDS
GATAGCTAGAAATGATTTGG+AGG 0.496103 1.3:+19380303 MS.gene061708:CDS
AGCAAAGGCTCTTGCGAATG+AGG 0.498730 1.3:+19380453 MS.gene061708:CDS
CGCATCTTTAGAGGCTACCT+TGG 0.506651 1.3:+19380123 MS.gene061708:CDS
GAAGAGGTTCAAAATTTCCA+TGG 0.507513 1.3:+19382307 MS.gene061708:CDS
AAATGATTTGGAGGAGAACC+AGG 0.515662 1.3:+19380312 MS.gene061708:CDS
TTTAGAGGCTACCTTGGAGA+TGG 0.515982 1.3:+19380129 MS.gene061708:CDS
ACTCAACAACTTAAGTGGGT+TGG 0.521119 1.3:+19382876 MS.gene061708:CDS
TCTGATGAGAAGGCGAATGA+AGG 0.523662 1.3:+19382852 MS.gene061708:CDS
TTCAGTTCAAATACCACTTG+AGG 0.525670 1.3:+19380099 MS.gene061708:CDS
GAATTTGTGGATTGGTGTTG+CGG 0.530345 1.3:-19380070 None:intergenic
TGGATTGGTGTTGCGGATGT+GGG 0.531276 1.3:-19380063 None:intergenic
GATTTGCTTCCACCTGGTGT+TGG 0.532322 1.3:+19382229 MS.gene061708:CDS
ACCTTCATCGACATCAGATA+AGG 0.533255 1.3:-19382811 None:intergenic
ATGGAACTTATCTTCTGATG+TGG 0.534795 1.3:+19383937 MS.gene061708:CDS
CTAAGTCTTTCTGCAGCACC+GGG 0.536343 1.3:-19380411 None:intergenic
AGAACGCAATCAAAACTAGC+TGG 0.537621 1.3:+19382578 MS.gene061708:CDS
GAATGAGGTGCCATTTAAAG+AGG 0.540009 1.3:+19380468 MS.gene061708:CDS
CTGGTGATAAAATGTGCTCC+TGG 0.543944 1.3:-19380330 None:intergenic
CGAGCAAGATGCAATTCAAA+CGG 0.545354 1.3:-19382370 None:intergenic
GTCGATGAAGGTGATGTTGT+TGG 0.547764 1.3:+19382822 MS.gene061708:CDS
AAGGAAAGAGAAAATTGGAT+AGG 0.548006 1.3:-19382194 None:intergenic
TAACTACCTTATTATCATTG+AGG 0.550902 1.3:-19383988 None:intergenic
AGTAGTATTGTGGCGCCAGA+TGG 0.552048 1.3:+19380376 MS.gene061708:CDS
TGGAGCTGATGACGTGTTGG+TGG 0.553560 1.3:+19382513 MS.gene061708:CDS
TGAGGCCGCAGCTTTGGAGG+AGG 0.555503 1.3:+19380027 MS.gene061708:CDS
TATGCAAACTTGGCTAGCAA+AGG 0.557006 1.3:+19380438 MS.gene061708:CDS
GCAAATCCATTGCTACTGAA+AGG 0.559843 1.3:-19382213 None:intergenic
GCTGTCGAAGACATTACTGT+TGG 0.561036 1.3:+19382493 MS.gene061708:CDS
ATAGGAGTTACCACAATTGT+CGG 0.561985 1.3:-19380217 None:intergenic
CCAAAAGTGATGAGCTGAGG+AGG 0.564041 1.3:+19382437 MS.gene061708:CDS
TAGCAAGGTAGTAGCTAACA+AGG 0.569555 1.3:-19382273 None:intergenic
GCAATGGATTTGCTTCCACC+TGG 0.569568 1.3:+19382223 MS.gene061708:CDS
AAATATCTGAATTTGTGGAT+TGG 0.574440 1.3:-19380078 None:intergenic
CAGTAAAACTCCCTTGTGTG+AGG 0.577220 1.3:-19382406 None:intergenic
ATTAGATGTCAGTAGTATTG+TGG 0.579090 1.3:+19380366 MS.gene061708:CDS
AGATGGTGCTCCTGTAGACC+CGG 0.590451 1.3:+19380393 MS.gene061708:CDS
GCCTTATCTGATGTCGATGA+AGG 0.592468 1.3:+19382810 MS.gene061708:CDS
CAATTGTCGGTGTTACAACT+GGG 0.594774 1.3:-19380204 None:intergenic
TCTAAAGATGCGGCCTCAAG+TGG 0.600645 1.3:-19380112 None:intergenic
AGTTGTAACACCGACAATTG+TGG 0.602404 1.3:+19380207 MS.gene061708:CDS
AGTAAAACTCCCTTGTGTGA+GGG 0.603789 1.3:-19382405 None:intergenic
AGGAACTCAACAACTTAAGT+GGG 0.608802 1.3:+19382872 MS.gene061708:CDS
GATGCAACGTCCCAATCCCA+AGG 0.611794 1.3:+19380151 MS.gene061708:CDS
AAGTATTATTAGTAATAGCA+GGG 0.612733 1.3:-19380249 None:intergenic
TGTTGGAGCTGATGACGTGT+TGG 0.619893 1.3:+19382510 MS.gene061708:CDS
TAACAAGGAGTTCATCAGAA+GGG 0.633655 1.3:-19382258 None:intergenic
ATGCAACGTCCCAATCCCAA+GGG 0.641860 1.3:+19380152 MS.gene061708:CDS
CCTTAATCAAGTCAGAACCA+TGG 0.642289 1.3:-19382324 None:intergenic
CAAGGTAGCCTCTAAAGATG+CGG 0.642302 1.3:-19380122 None:intergenic
CATTTCCTCCTCCAAAGCTG+CGG 0.642375 1.3:-19380032 None:intergenic
GGACGTTGCATCCATCTCCA+AGG 0.642630 1.3:-19380140 None:intergenic
CTGCCAAAAGTGATGAGCTG+AGG 0.648920 1.3:+19382434 MS.gene061708:CDS
GGAGCTGATGACGTGTTGGT+GGG 0.656135 1.3:+19382514 MS.gene061708:CDS
GGGACGAAACCAACACCAGG+TGG 0.656589 1.3:-19382238 None:intergenic
GCTGATGCTAGTGCTGAGCA+AGG 0.658942 1.3:+19382912 MS.gene061708:CDS
TGGTGACGACTCTGATGAGA+AGG 0.667599 1.3:+19382842 MS.gene061708:CDS
CTAACAAGGAGTTCATCAGA+AGG 0.675712 1.3:-19382259 None:intergenic
GAAGGGACGAAACCAACACC+AGG 0.689839 1.3:-19382241 None:intergenic
CCAGATCCATCCCTCTATGG+CGG 0.701242 1.3:-19382773 None:intergenic
TGCAACGTCCCAATCCCAAG+GGG 0.727633 1.3:+19380153 MS.gene061708:CDS
CAACTGGGATGTCATCTGCG+TGG 0.735463 1.3:-19380189 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTAAAGAAAAATAAAA+AGG - chr1.3:19383556-19383575 None:intergenic 10.0%
!! AAAGAAAATTAAATATATAC+AGG - chr1.3:19380746-19380765 None:intergenic 10.0%
!! TCAAAAATTATGTTTAATTA+CGG + chr1.3:19383280-19383299 MS.gene061708:intron 10.0%
!! TTTAATATAAATAATTGTGT+AGG + chr1.3:19382722-19382741 MS.gene061708:intron 10.0%
!!! ATATATTTAATTTTCTTTTG+AGG + chr1.3:19380748-19380767 MS.gene061708:intron 10.0%
!!! GTTAAATATGATTTTTTTTT+AGG + chr1.3:19381476-19381495 MS.gene061708:intron 10.0%
!!! TAAAAATTCCTTTTTTTTTT+TGG - chr1.3:19381875-19381894 None:intergenic 10.0%
!!! TATATTTAATTTTCTTTTGA+GGG + chr1.3:19380749-19380768 MS.gene061708:intron 10.0%
!!! TGAAAATTCATTTTTTTTTT+AGG - chr1.3:19381541-19381560 None:intergenic 10.0%
!!! TTAATTTTTAACATGTTTTA+AGG - chr1.3:19383489-19383508 None:intergenic 10.0%
!! AAAAAAAAAGAATTTGCAAA+AGG + chr1.3:19380512-19380531 MS.gene061708:intron 15.0%
!! AAAAAGAAAATATCCTAAAA+AGG + chr1.3:19381746-19381765 MS.gene061708:intron 15.0%
!! AAATCAAGTAAATTATCATT+AGG + chr1.3:19380939-19380958 MS.gene061708:intron 15.0%
!! AATAATATTACATATTGGAA+AGG + chr1.3:19380817-19380836 MS.gene061708:intron 15.0%
!! ACAATTATACAAAACAAAAA+AGG + chr1.3:19381780-19381799 MS.gene061708:intron 15.0%
!! ATTATGAATACAAATGTTTA+AGG - chr1.3:19383888-19383907 None:intergenic 15.0%
!! CAATTATACCAAAAAAAAAA+AGG + chr1.3:19381864-19381883 MS.gene061708:intron 15.0%
!! CATAAAAATCATTAATATTG+TGG - chr1.3:19383094-19383113 None:intergenic 15.0%
!! GTTTGATATTGATATTTATT+AGG + chr1.3:19383692-19383711 MS.gene061708:intron 15.0%
!! TAATTTATTTACTAACTACT+AGG + chr1.3:19381232-19381251 MS.gene061708:intron 15.0%
!! TCAAAAAAAAAATCTCAAAA+AGG + chr1.3:19381661-19381680 MS.gene061708:intron 15.0%
!! TTAAACATTTGTATTCATAA+TGG + chr1.3:19383887-19383906 MS.gene061708:intron 15.0%
!! TTATGAATACAAATGTTTAA+GGG - chr1.3:19383887-19383906 None:intergenic 15.0%
!!! CTGATCTTATTTAAATTTAT+TGG + chr1.3:19383817-19383836 MS.gene061708:intron 15.0%
!!! TATAAGTTACTTTTGAAATA+AGG - chr1.3:19381518-19381537 None:intergenic 15.0%
!!! TATTTTTCTTTAAGTTTTTG+TGG + chr1.3:19383559-19383578 MS.gene061708:intron 15.0%
!! AAAAATATTTACAATAAGGG+GGG - chr1.3:19380787-19380806 None:intergenic 20.0%
!! AAAATATCCTAAAAAGGATA+TGG + chr1.3:19381752-19381771 MS.gene061708:intron 20.0%
!! AAATATATACAGGAAAAACA+AGG - chr1.3:19380736-19380755 None:intergenic 20.0%
!! AAATATCCTAAAAAGGATAT+GGG + chr1.3:19381753-19381772 MS.gene061708:intron 20.0%
!! AAGAATTATATTCAAGAGTA+AGG + chr1.3:19381034-19381053 MS.gene061708:intron 20.0%
!! AAGTATTATTAGTAATAGCA+GGG - chr1.3:19380252-19380271 None:intergenic 20.0%
!! AATTATATTCATTTAAACGG+AGG - chr1.3:19380570-19380589 None:intergenic 20.0%
!! ACTCTTGAATATAATTCTTT+CGG - chr1.3:19381033-19381052 None:intergenic 20.0%
!! AGGGAAAAATATTTACAATA+AGG - chr1.3:19380791-19380810 None:intergenic 20.0%
!! ATAAAATTTCACTAACTACT+AGG + chr1.3:19381257-19381276 MS.gene061708:intron 20.0%
!! ATTAAAAAAAACTAGCGAAA+TGG + chr1.3:19382011-19382030 MS.gene061708:intron 20.0%
!! CAATAAAAAATATCCCAAAT+TGG + chr1.3:19381829-19381848 MS.gene061708:intron 20.0%
!! CACTAATTTATTGAGTAAAT+AGG + chr1.3:19381061-19381080 MS.gene061708:intron 20.0%
!! CTATTTACTCAATAAATTAG+TGG - chr1.3:19381063-19381082 None:intergenic 20.0%
!! GAAAAATATTTACAATAAGG+GGG - chr1.3:19380788-19380807 None:intergenic 20.0%
!! GGAAAAATATTTACAATAAG+GGG - chr1.3:19380789-19380808 None:intergenic 20.0%
!! GGGAAAAATATTTACAATAA+GGG - chr1.3:19380790-19380809 None:intergenic 20.0%
!! TCGATGATTAATTTATGTAT+TGG + chr1.3:19382682-19382701 MS.gene061708:intron 20.0%
!! TTGAAGTTTCTTAAAAATCA+GGG - chr1.3:19381126-19381145 None:intergenic 20.0%
!!! AAAGTATTATTAGTAATAGC+AGG - chr1.3:19380253-19380272 None:intergenic 20.0%
!!! AAATTTTCGAAAAAAGGATA+TGG + chr1.3:19381924-19381943 MS.gene061708:intron 20.0%
!!! AACAGAAAATTTTCGAAAAA+AGG + chr1.3:19381918-19381937 MS.gene061708:intron 20.0%
!!! AAGAGATTTTTTTCCTAAAA+AGG + chr1.3:19381631-19381650 MS.gene061708:intron 20.0%
!!! AATATATTTTACCTGAAAAG+TGG - chr1.3:19382967-19382986 None:intergenic 20.0%
!!! AGAGATTTTTTTCCTAAAAA+GGG + chr1.3:19381632-19381651 MS.gene061708:intron 20.0%
!!! ATATAATTTTTTGGAACATC+CGG + chr1.3:19380582-19380601 MS.gene061708:intron 20.0%
!!! CATAATTTTTGATACAATTG+TGG - chr1.3:19383272-19383291 None:intergenic 20.0%
!!! GGGATAAAAAATCTTTTTTT+TGG - chr1.3:19381707-19381726 None:intergenic 20.0%
!!! TCTCTCTTCTTTTTTTATAT+AGG + chr1.3:19382544-19382563 MS.gene061708:CDS 20.0%
!!! TTTCTTACACATTCTATTTT+GGG - chr1.3:19381728-19381747 None:intergenic 20.0%
!!! TTTCTTTTTAATGACTGTTT+GGG - chr1.3:19381307-19381326 None:intergenic 20.0%
!!! TTTGAAGTTTCTTAAAAATC+AGG - chr1.3:19381127-19381146 None:intergenic 20.0%
!!! TTTTCTTACACATTCTATTT+TGG - chr1.3:19381729-19381748 None:intergenic 20.0%
!!! TTTTCTTTTTAATGACTGTT+TGG - chr1.3:19381308-19381327 None:intergenic 20.0%
!!! TTTTTTACACATTCCTTTTT+CGG - chr1.3:19381899-19381918 None:intergenic 20.0%
! AAAAAGAAAATCTCCCAAAA+AGG + chr1.3:19381584-19381603 MS.gene061708:intron 25.0%
! AAAATATCCCAAATTGGATA+CGG + chr1.3:19381835-19381854 MS.gene061708:intron 25.0%
! AAATATCTGAATTTGTGGAT+TGG - chr1.3:19380081-19380100 None:intergenic 25.0%
! AACTGAAATATCTGAATTTG+TGG - chr1.3:19380086-19380105 None:intergenic 25.0%
! AATATTACATATTGGAAAGG+CGG + chr1.3:19380820-19380839 MS.gene061708:intron 25.0%
! ACGAAAGTTACAATTTCATA+GGG - chr1.3:19381094-19381113 None:intergenic 25.0%
! ACGATGATTTCTTACTAAAT+GGG + chr1.3:19381988-19382007 MS.gene061708:intron 25.0%
! ATAGATTTCCTTAGCTATTT+CGG + chr1.3:19380708-19380727 MS.gene061708:intron 25.0%
! CATAAATAATCCAAACACAA+TGG - chr1.3:19383218-19383237 None:intergenic 25.0%
! TATGAAGTTGTTGATCTTAA+TGG - chr1.3:19381350-19381369 None:intergenic 25.0%
! TATTCAAAACCTTTATGTGT+TGG + chr1.3:19383157-19383176 MS.gene061708:intron 25.0%
! TGAAGTTTCTTAAAAATCAG+GGG - chr1.3:19381125-19381144 None:intergenic 25.0%
! TTAATTACGGAAGTCAATAT+TGG + chr1.3:19383293-19383312 MS.gene061708:intron 25.0%
!! AAGGAATTTTTATCCGAAAA+AGG + chr1.3:19381799-19381818 MS.gene061708:intron 25.0%
!! AATAAAAAGGACATGTTTTG+AGG - chr1.3:19383543-19383562 None:intergenic 25.0%
!! AATGAATTTTCATCCCAAAA+AGG + chr1.3:19381549-19381568 MS.gene061708:intron 25.0%
!! ACTTAGATTTTATGCAAACT+TGG + chr1.3:19380428-19380447 MS.gene061708:CDS 25.0%
!! CATCTTTTCGTGTAATTTTA+TGG + chr1.3:19383630-19383649 MS.gene061708:intron 25.0%
!! GGATGTAGAATTTTGTAATT+GGG - chr1.3:19383251-19383270 None:intergenic 25.0%
!! TAGTTGAAATTCTGAAAGAT+AGG - chr1.3:19382104-19382123 None:intergenic 25.0%
!! TATGACCAACTTTTAAATCA+TGG + chr1.3:19383118-19383137 MS.gene061708:intron 25.0%
!! TGGATGTAGAATTTTGTAAT+TGG - chr1.3:19383252-19383271 None:intergenic 25.0%
!! TTAGTCAAACAACATGTTTT+AGG - chr1.3:19381383-19381402 None:intergenic 25.0%
!! TTATTGACACATTCCTTTTT+CGG - chr1.3:19381815-19381834 None:intergenic 25.0%
!! TTCTTACACATTCTATTTTG+GGG - chr1.3:19381727-19381746 None:intergenic 25.0%
!! TTTGAAACTACCTCTTTAAA+TGG - chr1.3:19380481-19380500 None:intergenic 25.0%
!!! AGCATTTTTCTTCTTTGTTT+TGG + chr1.3:19384063-19384082 MS.gene061708:intron 25.0%
!!! CTCGATATTTATTTTGTCAT+CGG + chr1.3:19382999-19383018 MS.gene061708:intron 25.0%
!!! GCATTTTTCTTCTTTGTTTT+GGG + chr1.3:19384064-19384083 MS.gene061708:intron 25.0%
!!! TAATTTTCTTTTGAGGGTTT+TGG + chr1.3:19380755-19380774 MS.gene061708:intron 25.0%
!!! TATAATTTTTTGGAACATCC+GGG + chr1.3:19380583-19380602 MS.gene061708:intron 25.0%
!!! TTTTTTACACCTTCCTTTTT+GGG - chr1.3:19381565-19381584 None:intergenic 25.0%
!!! TTTTTTTACACCTTCCTTTT+TGG - chr1.3:19381566-19381585 None:intergenic 25.0%
AAAAAAGGATATGGTCAAAG+GGG + chr1.3:19381933-19381952 MS.gene061708:intron 30.0%
AAAATCTCCCAAAAAGGATA+GGG + chr1.3:19381590-19381609 MS.gene061708:intron 30.0%
AAATATCCCAAATTGGATAC+GGG + chr1.3:19381836-19381855 MS.gene061708:intron 30.0%
AAGGAAAGAGAAAATTGGAT+AGG - chr1.3:19382197-19382216 None:intergenic 30.0%
AAGGATACGAGTAAAACAAT+TGG + chr1.3:19381680-19381699 MS.gene061708:intron 30.0%
ACTGAAAGGAAAGAGAAAAT+TGG - chr1.3:19382202-19382221 None:intergenic 30.0%
AGTAAGAAATCATCGTCATA+CGG - chr1.3:19381984-19382003 None:intergenic 30.0%
ATTAGATGTCAGTAGTATTG+TGG + chr1.3:19380366-19380385 MS.gene061708:CDS 30.0%
CAAAAACTACCAACACATAA+AGG - chr1.3:19383169-19383188 None:intergenic 30.0%
CATTTAACAGCCAAAACAAA+CGG - chr1.3:19381192-19381211 None:intergenic 30.0%
GAAAAAAGGATATGGTCAAA+GGG + chr1.3:19381932-19381951 MS.gene061708:intron 30.0%
GACGAAAGTTACAATTTCAT+AGG - chr1.3:19381095-19381114 None:intergenic 30.0%
GACGATGATTTCTTACTAAA+TGG + chr1.3:19381987-19382006 MS.gene061708:intron 30.0%
GCAATTTAAGCTTGCAATTA+TGG + chr1.3:19383773-19383792 MS.gene061708:intron 30.0%
TATGTTGCCTTCTTCTTTAT+TGG + chr1.3:19380649-19380668 MS.gene061708:intron 30.0%
TGAGATAGCTAGAAATGATT+TGG + chr1.3:19380300-19380319 MS.gene061708:CDS 30.0%
TGCTAACAAAAACAATGAAG+AGG + chr1.3:19382291-19382310 MS.gene061708:CDS 30.0%
TGTAAAATTCAGTTGCAAAG+AGG - chr1.3:19383344-19383363 None:intergenic 30.0%
TGTGACCATGATTTAAAAGT+TGG - chr1.3:19383126-19383145 None:intergenic 30.0%
TTAAATCATGGTCACACTAT+AGG + chr1.3:19383130-19383149 MS.gene061708:intron 30.0%
! AATTTTCATCCCAAAAAGGA+AGG + chr1.3:19381553-19381572 MS.gene061708:intron 30.0%
! AGAGAAAATTGGATAGGTTT+TGG - chr1.3:19382191-19382210 None:intergenic 30.0%
! CTTTTCGTGTAATTTTATGG+TGG + chr1.3:19383633-19383652 MS.gene061708:intron 30.0%
! GAGAAAATTGGATAGGTTTT+GGG - chr1.3:19382190-19382209 None:intergenic 30.0%
! TGTTTTACCCTATCCTTTTT+GGG - chr1.3:19381600-19381619 None:intergenic 30.0%
! TTTTGACACATTCCCTTTTT+AGG - chr1.3:19381647-19381666 None:intergenic 30.0%
!! TTGTTTTACCCTATCCTTTT+TGG - chr1.3:19381601-19381620 None:intergenic 30.0%
!!! ATAATTTTTTGGAACATCCG+GGG + chr1.3:19380584-19380603 MS.gene061708:intron 30.0%
!!! CTTCATTGTTTTTGTTAGCA+AGG - chr1.3:19382291-19382310 None:intergenic 30.0%
!!! TCTAATGTTTTTTCCTTGAC+TGG - chr1.3:19380352-19380371 None:intergenic 30.0%
!!! TTATGTGTTGGTAGTTTTTG+TGG + chr1.3:19383169-19383188 MS.gene061708:intron 30.0%
AAAACACGGCAAACAACAAA+AGG - chr1.3:19382750-19382769 None:intergenic 35.0%
AAAATACCTCCATCATATGC+GGG + chr1.3:19383068-19383087 MS.gene061708:intron 35.0%
AAATCCGCCAATAAAGAAGA+AGG - chr1.3:19380659-19380678 None:intergenic 35.0%
AACCATTCTCTTGGCATTAT+TGG + chr1.3:19380908-19380927 MS.gene061708:intron 35.0%
AAGGAACTCAACAACTTAAG+TGG + chr1.3:19382871-19382890 MS.gene061708:CDS 35.0%
AATCATTATTACCAATCCCC+CGG - chr1.3:19380604-19380623 None:intergenic 35.0%
ACCCGTTCAGAAAAAAATTG+AGG + chr1.3:19380009-19380028 MS.gene061708:CDS 35.0%
AGAACTATCGAACACACTTA+AGG - chr1.3:19380966-19380985 None:intergenic 35.0%
AGAGGATCAACAACATTAAC+TGG - chr1.3:19383326-19383345 None:intergenic 35.0%
AGGAACTCAACAACTTAAGT+GGG + chr1.3:19382872-19382891 MS.gene061708:CDS 35.0%
ATAATGCCAAGAGAATGGTT+AGG - chr1.3:19380908-19380927 None:intergenic 35.0%
ATAGGAGTTACCACAATTGT+CGG - chr1.3:19380220-19380239 None:intergenic 35.0%
ATGGAACTTATCTTCTGATG+TGG + chr1.3:19383937-19383956 MS.gene061708:CDS 35.0%
ATTGCAAGCTTAAATTGCTC+CGG - chr1.3:19383771-19383790 None:intergenic 35.0%
CAAAATACCTCCATCATATG+CGG + chr1.3:19383067-19383086 MS.gene061708:intron 35.0%
CGAAAAAAGGATATGGTCAA+AGG + chr1.3:19381931-19381950 MS.gene061708:intron 35.0%
CTAACGTTTGACAATTTCAG+CGG - chr1.3:19381154-19381173 None:intergenic 35.0%
GAAAATCTCCCAAAAAGGAT+AGG + chr1.3:19381589-19381608 MS.gene061708:intron 35.0%
GAAGAGGTTCAAAATTTCCA+TGG + chr1.3:19382307-19382326 MS.gene061708:CDS 35.0%
GCAATTCAAACGGATCATAT+TGG - chr1.3:19382363-19382382 None:intergenic 35.0%
GTCAATAATATTGTCCCCTT+GGG - chr1.3:19380170-19380189 None:intergenic 35.0%
GTCACATAAGCTTCATAAGA+GGG - chr1.3:19382074-19382093 None:intergenic 35.0%
TAACAAGGAGTTCATCAGAA+GGG - chr1.3:19382261-19382280 None:intergenic 35.0%
TAACGTTTGACAATTTCAGC+GGG - chr1.3:19381153-19381172 None:intergenic 35.0%
TCACATAAGCTTCATAAGAG+GGG - chr1.3:19382073-19382092 None:intergenic 35.0%
TGTCACATAAGCTTCATAAG+AGG - chr1.3:19382075-19382094 None:intergenic 35.0%
TTCAGTTCAAATACCACTTG+AGG + chr1.3:19380099-19380118 MS.gene061708:CDS 35.0%
TTCCAATAATGCCAAGAGAA+TGG - chr1.3:19380913-19380932 None:intergenic 35.0%
TTCCCAAATGACATACATGA+GGG - chr1.3:19382633-19382652 None:intergenic 35.0%
TTTAGAGAGGATAGTGCAAA+TGG - chr1.3:19382158-19382177 None:intergenic 35.0%
TTTCCCAAATGACATACATG+AGG - chr1.3:19382634-19382653 None:intergenic 35.0%
! AACCCTCATGTATGTCATTT+GGG + chr1.3:19382628-19382647 MS.gene061708:intron 35.0%
! GATAGCTAGAAATGATTTGG+AGG + chr1.3:19380303-19380322 MS.gene061708:CDS 35.0%
! GTTTTACCCGTATCCAATTT+GGG - chr1.3:19381845-19381864 None:intergenic 35.0%
! GTTTTGCCCATATCCTTTTT+AGG - chr1.3:19381762-19381781 None:intergenic 35.0%
! TGTTTTACCCGTATCCAATT+TGG - chr1.3:19381846-19381865 None:intergenic 35.0%
!!! GCCTCAATTTTTTTCTGAAC+GGG - chr1.3:19380013-19380032 None:intergenic 35.0%
!!! GGCCTCAATTTTTTTCTGAA+CGG - chr1.3:19380014-19380033 None:intergenic 35.0%
!!! TAATTTTTTGGAACATCCGG+GGG + chr1.3:19380585-19380604 MS.gene061708:intron 35.0%
!!! TAGTTTTGATTGCGTTCTGA+GGG - chr1.3:19382576-19382595 None:intergenic 35.0%
!!! TTTATTGGCGGATTTTGCTA+GGG + chr1.3:19380664-19380683 MS.gene061708:intron 35.0%
AACGTTTGACAATTTCAGCG+GGG - chr1.3:19381152-19381171 None:intergenic 40.0%
AAGAGAATGGTTAGGCATTC+GGG - chr1.3:19380900-19380919 None:intergenic 40.0%
AATATTGTCCCCTTGGGATT+GGG - chr1.3:19380164-19380183 None:intergenic 40.0%
AATCATGGTCACACTATAGG+TGG + chr1.3:19383133-19383152 MS.gene061708:intron 40.0%
ACAAGGAACCGAAATAGCTA+AGG - chr1.3:19380719-19380738 None:intergenic 40.0%
ACCTTCATCGACATCAGATA+AGG - chr1.3:19382814-19382833 None:intergenic 40.0%
ACTCAACAACTTAAGTGGGT+TGG + chr1.3:19382876-19382895 MS.gene061708:CDS 40.0%
AGAACGCAATCAAAACTAGC+TGG + chr1.3:19382578-19382597 MS.gene061708:CDS 40.0%
AGGTGATGCATTGCATTTCA+TGG + chr1.3:19382932-19382951 MS.gene061708:CDS 40.0%
AGTAAAACTCCCTTGTGTGA+GGG - chr1.3:19382408-19382427 None:intergenic 40.0%
AGTTGTAACACCGACAATTG+TGG + chr1.3:19380207-19380226 MS.gene061708:CDS 40.0%
ATAGCAGGGCAATGAGAAAT+AGG - chr1.3:19380238-19380257 None:intergenic 40.0%
ATTCATTTAAACGGAGGCAG+AGG - chr1.3:19380564-19380583 None:intergenic 40.0%
ATTTACAATAAGGGGGGACT+AGG - chr1.3:19380781-19380800 None:intergenic 40.0%
CAAACGGATCATATTGGTAC+AGG - chr1.3:19382357-19382376 None:intergenic 40.0%
CAACCCTCATGTATGTCATT+TGG + chr1.3:19382627-19382646 MS.gene061708:intron 40.0%
CAAGAGAATGGTTAGGCATT+CGG - chr1.3:19380901-19380920 None:intergenic 40.0%
CCAAACACAATGGAGCTATT+TGG - chr1.3:19383208-19383227 None:intergenic 40.0%
CCAAATAGCTCCATTGTGTT+TGG + chr1.3:19383205-19383224 MS.gene061708:intron 40.0%
CCTTAATCAAGTCAGAACCA+TGG - chr1.3:19382327-19382346 None:intergenic 40.0%
CGAGCAAGATGCAATTCAAA+CGG - chr1.3:19382373-19382392 None:intergenic 40.0%
CGTTTGAATTGCATCTTGCT+CGG + chr1.3:19382371-19382390 MS.gene061708:CDS 40.0%
CTAACAAGGAGTTCATCAGA+AGG - chr1.3:19382262-19382281 None:intergenic 40.0%
CTCTTTCCTTTCAGTAGCAA+TGG + chr1.3:19382207-19382226 MS.gene061708:CDS 40.0%
GCAAATCCATTGCTACTGAA+AGG - chr1.3:19382216-19382235 None:intergenic 40.0%
GGTCAATAATATTGTCCCCT+TGG - chr1.3:19380171-19380190 None:intergenic 40.0%
GTTGCCTTCTTCTTTATTGG+CGG + chr1.3:19380652-19380671 MS.gene061708:intron 40.0%
TAACAGCCAAAACAAACGGA+GGG - chr1.3:19381188-19381207 None:intergenic 40.0%
TAATATTGTCCCCTTGGGAT+TGG - chr1.3:19380165-19380184 None:intergenic 40.0%
TAGCAAGGTAGTAGCTAACA+AGG - chr1.3:19382276-19382295 None:intergenic 40.0%
TATGCAAACTTGGCTAGCAA+AGG + chr1.3:19380438-19380457 MS.gene061708:CDS 40.0%
TCATACAAAACCCGCTTTCA+GGG + chr1.3:19380537-19380556 MS.gene061708:intron 40.0%
TTAACAGCCAAAACAAACGG+AGG - chr1.3:19381189-19381208 None:intergenic 40.0%
TTCATACAAAACCCGCTTTC+AGG + chr1.3:19380536-19380555 MS.gene061708:intron 40.0%
! AAATGATTTGGAGGAGAACC+AGG + chr1.3:19380312-19380331 MS.gene061708:CDS 40.0%
! ACTGGATTTTGGATGCAGAT+GGG + chr1.3:19382469-19382488 MS.gene061708:CDS 40.0%
! CTCAACAACTTAAGTGGGTT+GGG + chr1.3:19382877-19382896 MS.gene061708:CDS 40.0%
! CTTTTTCTTCCCTCACACAA+GGG + chr1.3:19382396-19382415 MS.gene061708:CDS 40.0%
! GCACATTTTATCACCAGTCA+AGG + chr1.3:19380336-19380355 MS.gene061708:CDS 40.0%
! GGCATTGTAAGACTGGATTT+TGG + chr1.3:19382458-19382477 MS.gene061708:CDS 40.0%
!! ACAATTGTCGGTGTTACAAC+TGG - chr1.3:19380208-19380227 None:intergenic 40.0%
!! CAATTGTCGGTGTTACAACT+GGG - chr1.3:19380207-19380226 None:intergenic 40.0%
!! CCATCAACTGAGTTCTAAGA+GGG - chr1.3:19383921-19383940 None:intergenic 40.0%
!! CCATGGTTCTGACTTGATTA+AGG + chr1.3:19382324-19382343 MS.gene061708:CDS 40.0%
!! GAATGAGGTGCCATTTAAAG+AGG + chr1.3:19380468-19380487 MS.gene061708:CDS 40.0%
!! GAATTTGTGGATTGGTGTTG+CGG - chr1.3:19380073-19380092 None:intergenic 40.0%
!! TCCATCAACTGAGTTCTAAG+AGG - chr1.3:19383922-19383941 None:intergenic 40.0%
!!! AGGACATGTTTTGAGGAATC+AGG - chr1.3:19383536-19383555 None:intergenic 40.0%
!!! AGTTTTGATTGCGTTCTGAG+GGG - chr1.3:19382575-19382594 None:intergenic 40.0%
!!! CTAGTTTTGATTGCGTTCTG+AGG - chr1.3:19382577-19382596 None:intergenic 40.0%
!!! CTTTATTGGCGGATTTTGCT+AGG + chr1.3:19380663-19380682 MS.gene061708:intron 40.0%
!!! TGGATAGGTTTTGGGTCTAA+GGG - chr1.3:19382182-19382201 None:intergenic 40.0%
!!! TTGGATAGGTTTTGGGTCTA+AGG - chr1.3:19382183-19382202 None:intergenic 40.0%
AAAAATTGAGGCCGCAGCTT+TGG + chr1.3:19380021-19380040 MS.gene061708:CDS 45.0%
AACAGCCAAAACAAACGGAG+GGG - chr1.3:19381187-19381206 None:intergenic 45.0%
AAGGATATGGTCAAAGGGGA+TGG + chr1.3:19381937-19381956 MS.gene061708:intron 45.0%
ACATATTGGAAAGGCGGTAG+TGG + chr1.3:19380826-19380845 MS.gene061708:intron 45.0%
ATATTGTGGCCCGCATATGA+TGG - chr1.3:19383080-19383099 None:intergenic 45.0%
ATTCCATGCTTGATGCTACG+TGG + chr1.3:19380621-19380640 MS.gene061708:intron 45.0%
CAGTAAAACTCCCTTGTGTG+AGG - chr1.3:19382409-19382428 None:intergenic 45.0%
CCCTCTTAGAACTCAGTTGA+TGG + chr1.3:19383918-19383937 MS.gene061708:intron 45.0%
CCTTGTGTGAGGGAAGAAAA+AGG - chr1.3:19382398-19382417 None:intergenic 45.0%
CGAATGCCTAACCATTCTCT+TGG + chr1.3:19380899-19380918 MS.gene061708:intron 45.0%
CTCTATGGCGGTCAAAAACA+CGG - chr1.3:19382764-19382783 None:intergenic 45.0%
CTGGTGATAAAATGTGCTCC+TGG - chr1.3:19380333-19380352 None:intergenic 45.0%
GCCTTATCTGATGTCGATGA+AGG + chr1.3:19382810-19382829 MS.gene061708:CDS 45.0%
GCTGTCGAAGACATTACTGT+TGG + chr1.3:19382493-19382512 MS.gene061708:CDS 45.0%
GGATAAATACTCCCAAGAGC+AGG - chr1.3:19383866-19383885 None:intergenic 45.0%
GGATCTGGACTCTGAATTGT+GGG + chr1.3:19382788-19382807 MS.gene061708:CDS 45.0%
GTCGATGAAGGTGATGTTGT+TGG + chr1.3:19382822-19382841 MS.gene061708:CDS 45.0%
TCTAAGTCTTTCTGCAGCAC+CGG - chr1.3:19380415-19380434 None:intergenic 45.0%
TCTGATGAGAAGGCGAATGA+AGG + chr1.3:19382852-19382871 MS.gene061708:CDS 45.0%
TGGATCTGGACTCTGAATTG+TGG + chr1.3:19382787-19382806 MS.gene061708:CDS 45.0%
TTGTGTCTAGTCCTGCTCTT+GGG + chr1.3:19383852-19383871 MS.gene061708:intron 45.0%
TTTAGAGGCTACCTTGGAGA+TGG + chr1.3:19380129-19380148 MS.gene061708:CDS 45.0%
! CAAGGTAGCCTCTAAAGATG+CGG - chr1.3:19380125-19380144 None:intergenic 45.0%
! CCTTTTTCTTCCCTCACACA+AGG + chr1.3:19382395-19382414 MS.gene061708:CDS 45.0%
! GAATCTGAAGCATCCCAACT+AGG - chr1.3:19380876-19380895 None:intergenic 45.0%
! GACTGGATTTTGGATGCAGA+TGG + chr1.3:19382468-19382487 MS.gene061708:CDS 45.0%
!! GTGTTTTTGACCGCCATAGA+GGG + chr1.3:19382763-19382782 MS.gene061708:CDS 45.0%
!!! TGGGTCTAAGGGTTTTAGAG+AGG - chr1.3:19382171-19382190 None:intergenic 45.0%
!! AAAAATTATATTCATTTAAA+CGG - chr1.3:19380573-19380592 None:intergenic 5.0%
!! ATGTAATATTATTAAAAAAA+GGG - chr1.3:19380810-19380829 None:intergenic 5.0%
!! TATGTAATATTATTAAAAAA+AGG - chr1.3:19380811-19380830 None:intergenic 5.0%
!!! TTAAATATGATTTTTTTTTA+GGG + chr1.3:19381477-19381496 MS.gene061708:intron 5.0%
!!! TTTAAATGAATATAATTTTT+TGG + chr1.3:19380573-19380592 MS.gene061708:intron 5.0%
!!! TTTTTAATAATATTACATAT+TGG + chr1.3:19380812-19380831 MS.gene061708:intron 5.0%
ACAGCCAAAACAAACGGAGG+GGG - chr1.3:19381186-19381205 None:intergenic 50.0%
ACTTGAGGCCGCATCTTTAG+AGG + chr1.3:19380114-19380133 MS.gene061708:CDS 50.0%
AGCAAAGGCTCTTGCGAATG+AGG + chr1.3:19380453-19380472 MS.gene061708:CDS 50.0%
AGTAGTATTGTGGCGCCAGA+TGG + chr1.3:19380376-19380395 MS.gene061708:CDS 50.0%
AGTCCAGATCCATCCCTCTA+TGG - chr1.3:19382779-19382798 None:intergenic 50.0%
AGTGGATGGAGGCTTCTGTT+GGG + chr1.3:19380844-19380863 MS.gene061708:intron 50.0%
ATGCAACGTCCCAATCCCAA+GGG + chr1.3:19380152-19380171 MS.gene061708:CDS 50.0%
CATTTCCTCCTCCAAAGCTG+CGG - chr1.3:19380035-19380054 None:intergenic 50.0%
CCAAAAGTGATGAGCTGAGG+AGG + chr1.3:19382437-19382456 MS.gene061708:CDS 50.0%
CTAAGTCTTTCTGCAGCACC+GGG - chr1.3:19380414-19380433 None:intergenic 50.0%
CTGCCAAAAGTGATGAGCTG+AGG + chr1.3:19382434-19382453 MS.gene061708:CDS 50.0%
CTTGTGTCTAGTCCTGCTCT+TGG + chr1.3:19383851-19383870 MS.gene061708:intron 50.0%
GAACCACGTAGCATCAAGCA+TGG - chr1.3:19380627-19380646 None:intergenic 50.0%
TAAGCTTCATAAGAGGGGCG+TGG - chr1.3:19382068-19382087 None:intergenic 50.0%
TCTAAAGATGCGGCCTCAAG+TGG - chr1.3:19380115-19380134 None:intergenic 50.0%
TGATTGTGTTGTGTCCCACG+TGG + chr1.3:19383734-19383753 MS.gene061708:intron 50.0%
TGTTGGGTGCCAACCTAGTT+GGG + chr1.3:19380860-19380879 MS.gene061708:intron 50.0%
! CCTCCTCAGCTCATCACTTT+TGG - chr1.3:19382440-19382459 None:intergenic 50.0%
! CGCATCTTTAGAGGCTACCT+TGG + chr1.3:19380123-19380142 MS.gene061708:CDS 50.0%
! CTGAAGCATCCCAACTAGGT+TGG - chr1.3:19380872-19380891 None:intergenic 50.0%
! GATTTGCTTCCACCTGGTGT+TGG + chr1.3:19382229-19382248 MS.gene061708:CDS 50.0%
! GCAATGGATTTGCTTCCACC+TGG + chr1.3:19382223-19382242 MS.gene061708:CDS 50.0%
! TAGTGGATGGAGGCTTCTGT+TGG + chr1.3:19380843-19380862 MS.gene061708:intron 50.0%
! TGGTGACGACTCTGATGAGA+AGG + chr1.3:19382842-19382861 MS.gene061708:CDS 50.0%
! TGTTGGAGCTGATGACGTGT+TGG + chr1.3:19382510-19382529 MS.gene061708:CDS 50.0%
! TTTTGACCGCCATAGAGGGA+TGG + chr1.3:19382767-19382786 MS.gene061708:CDS 50.0%
!! ATTGGAAAGGCGGTAGTGGA+TGG + chr1.3:19380830-19380849 MS.gene061708:intron 50.0%
!! CGTGTTTTTGACCGCCATAG+AGG + chr1.3:19382762-19382781 MS.gene061708:CDS 50.0%
!! CTGAGGAGGCATTGTAAGAC+TGG + chr1.3:19382451-19382470 MS.gene061708:CDS 50.0%
!! TGGATTGGTGTTGCGGATGT+GGG - chr1.3:19380066-19380085 None:intergenic 50.0%
!!! GGCTACTCAAGCCACTTTTC+AGG + chr1.3:19382953-19382972 MS.gene061708:CDS 50.0%
!!! TTTTGGAACATCCGGGGGAT+TGG + chr1.3:19380590-19380609 MS.gene061708:intron 50.0%
AGATGGTGCTCCTGTAGACC+CGG + chr1.3:19380393-19380412 MS.gene061708:CDS 55.0%
AGCCAAAACAAACGGAGGGG+GGG - chr1.3:19381184-19381203 None:intergenic 55.0%
CAACTGGGATGTCATCTGCG+TGG - chr1.3:19380192-19380211 None:intergenic 55.0%
CAGCCAAAACAAACGGAGGG+GGG - chr1.3:19381185-19381204 None:intergenic 55.0%
CCAGATCCATCCCTCTATGG+CGG - chr1.3:19382776-19382795 None:intergenic 55.0%
CTGTTGGGTGCCAACCTAGT+TGG + chr1.3:19380859-19380878 MS.gene061708:intron 55.0%
GAAGGGACGAAACCAACACC+AGG - chr1.3:19382244-19382263 None:intergenic 55.0%
GATGCAACGTCCCAATCCCA+AGG + chr1.3:19380151-19380170 MS.gene061708:CDS 55.0%
GGACGTTGCATCCATCTCCA+AGG - chr1.3:19380143-19380162 None:intergenic 55.0%
TGCAACGTCCCAATCCCAAG+GGG + chr1.3:19380153-19380172 MS.gene061708:CDS 55.0%
TTGTGGCCCGCATATGATGG+AGG - chr1.3:19383077-19383096 None:intergenic 55.0%
! AATTGAGGCCGCAGCTTTGG+AGG + chr1.3:19380024-19380043 MS.gene061708:CDS 55.0%
! GCTGATGCTAGTGCTGAGCA+AGG + chr1.3:19382912-19382931 MS.gene061708:CDS 55.0%
! GGAGCTGATGACGTGTTGGT+GGG + chr1.3:19382514-19382533 MS.gene061708:CDS 55.0%
! TACCCCCCCTCCGTTTGTTT+TGG + chr1.3:19381179-19381198 MS.gene061708:intron 55.0%
! TGGAGCTGATGACGTGTTGG+TGG + chr1.3:19382513-19382532 MS.gene061708:CDS 55.0%
!! CGCAGCTTTGGAGGAGGAAA+TGG + chr1.3:19380033-19380052 MS.gene061708:CDS 55.0%
!! GTGGATTGGTGTTGCGGATG+TGG - chr1.3:19380067-19380086 None:intergenic 55.0%
!!! TGGCGGATTTTGCTAGGGAC+AGG + chr1.3:19380669-19380688 MS.gene061708:intron 55.0%
AGGCAGAGGACCCTGAAAGC+GGG - chr1.3:19380550-19380569 None:intergenic 60.0%
CCACGTGGAAGCTATGACGC+CGG + chr1.3:19383749-19383768 MS.gene061708:intron 60.0%
CCGCCATAGAGGGATGGATC+TGG + chr1.3:19382773-19382792 MS.gene061708:CDS 60.0%
CGGCGTCATAGCTTCCACGT+GGG - chr1.3:19383751-19383770 None:intergenic 60.0%
GAGGCAGAGGACCCTGAAAG+CGG - chr1.3:19380551-19380570 None:intergenic 60.0%
GGGACGAAACCAACACCAGG+TGG - chr1.3:19382241-19382260 None:intergenic 60.0%
! TTCTGCAGCACCGGGTCTAC+AGG - chr1.3:19380406-19380425 None:intergenic 60.0%
!! GGAAAGGCGGTAGTGGATGG+AGG + chr1.3:19380833-19380852 MS.gene061708:intron 60.0%
!! GGGTCTACAGGAGCACCATC+TGG - chr1.3:19380394-19380413 None:intergenic 60.0%
CCGGCGTCATAGCTTCCACG+TGG - chr1.3:19383752-19383771 None:intergenic 65.0%
!! TGAGGCCGCAGCTTTGGAGG+AGG + chr1.3:19380027-19380046 MS.gene061708:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 19379995 19384115 19379995 ID=MS.gene061708
chr1.3 mRNA 19379995 19384115 19379995 ID=MS.gene061708.t1;Parent=MS.gene061708
chr1.3 exon 19379995 19380489 19379995 ID=MS.gene061708.t1.exon1;Parent=MS.gene061708.t1
chr1.3 CDS 19379995 19380489 19379995 ID=cds.MS.gene061708.t1;Parent=MS.gene061708.t1
chr1.3 exon 19382133 19382636 19382133 ID=MS.gene061708.t1.exon2;Parent=MS.gene061708.t1
chr1.3 CDS 19382133 19382636 19382133 ID=cds.MS.gene061708.t1;Parent=MS.gene061708.t1
chr1.3 exon 19382744 19382974 19382744 ID=MS.gene061708.t1.exon3;Parent=MS.gene061708.t1
chr1.3 CDS 19382744 19382974 19382744 ID=cds.MS.gene061708.t1;Parent=MS.gene061708.t1
chr1.3 exon 19383927 19384003 19383927 ID=MS.gene061708.t1.exon4;Parent=MS.gene061708.t1
chr1.3 CDS 19383927 19384003 19383927 ID=cds.MS.gene061708.t1;Parent=MS.gene061708.t1
chr1.3 exon 19384094 19384115 19384094 ID=MS.gene061708.t1.exon5;Parent=MS.gene061708.t1
chr1.3 CDS 19384094 19384115 19384094 ID=cds.MS.gene061708.t1;Parent=MS.gene061708.t1
Gene Sequence

>MS.gene061708

ATGATTTCAAATGAACCCGTTCAGAAAAAAATTGAGGCCGCAGCTTTGGAGGAGGAAATGGAAACTGTCCCACATCCGCAACACCAATCCACAAATTCAGATATTTCAGTTCAAATACCACTTGAGGCCGCATCTTTAGAGGCTACCTTGGAGATGGATGCAACGTCCCAATCCCAAGGGGACAATATTATTGACCACGCAGATGACATCCCAGTTGTAACACCGACAATTGTGGTAACTCCTATTTCTCATTGCCCTGCTATTACTAATAATACTTTTAGCATACAACTTGAGAATGAATCTGATGAGATAGCTAGAAATGATTTGGAGGAGAACCAGGAGCACATTTTATCACCAGTCAAGGAAAAAACATTAGATGTCAGTAGTATTGTGGCGCCAGATGGTGCTCCTGTAGACCCGGTGCTGCAGAAAGACTTAGATTTTATGCAAACTTGGCTAGCAAAGGCTCTTGCGAATGAGGTGCCATTTAAAGAGGTAGTTTCAAAGTCTCTGAAAAAAAAAAAAAGAATTTGCAAAAGGCTTCATACAAAACCCGCTTTCAGGGTCCTCTGCCTCCGTTTAAATGAATATAATTTTTTGGAACATCCGGGGGATTGGTAATAATGATTCCATGCTTGATGCTACGTGGTTCACTATGTTGCCTTCTTCTTTATTGGCGGATTTTGCTAGGGACAGGAATGAGATGACTAATTATAGATTTCCTTAGCTATTTCGGTTCCTTGTTTTTCCTGTATATATTTAATTTTCTTTTGAGGGTTTTGGCCTAGTCCCCCCTTATTGTAAATATTTTTCCCTTTTTTTAATAATATTACATATTGGAAAGGCGGTAGTGGATGGAGGCTTCTGTTGGGTGCCAACCTAGTTGGGATGCTTCAGATTCTCCCGAATGCCTAACCATTCTCTTGGCATTATTGGAAGAAAAAAAATCAAGTAAATTATCATTAGGTCCTTAAGTGTGTTCGATAGTTCTTTTTAAAAAAAATGTGTGTTTGATAGTTCATGAACTAAGTCATACCGAAAGAATTATATTCAAGAGTAAGGTAACCACTAATTTATTGAGTAAATAGGCAAAAATCCCTATGAAATTGTAACTTTCGTCAAAAACACCCCTGATTTTTAAGAAACTTCAAAAACCCCGCTGAAATTGTCAAACGTTAGTCAATTACCCCCCCTCCGTTTGTTTTGGCTGTTAAATGACTATTTTTTAATTTGCACTTAATTTATTTACTAACTACTAGGATATAAAATTTCACTAACTACTAGGATATAAAATTTCACTTAATTTGCACCCAAACAGTCATTAAAAAGAAAATTCTTGAGAACAATCAACTCCATTAAGATCAACAACTTCATATTACTAAACTCCTAAAACATGTTGTTTGACTAATGTGCATTTTAACTATGTTAACTACAAGAAGTTCTGAATCATAAATTAAAATCATAATAATAATATATCTAATGTTAAATATGATTTTTTTTTAGGGAGAATGAATTTTTATCCTTATTTCAAAAGTAACTTATACCTAAAAAAAAAATGAATTTTCATCCCAAAAAGGAAGGTGTAAAAAAAAAAGAAAATCTCCCAAAAAGGATAGGGTAAAACAATTATATATAAAAGAGATTTTTTTCCTAAAAAGGGAATGTGTCAAAAAAAAAATCTCAAAAAGGATACGAGTAAAACAATTGGACCAAAAAAAAGATTTTTTATCCCCAAAATAGAATGTGTAAGAAAAAAGAAAATATCCTAAAAAGGATATGGGCAAAACAATTATACAAAACAAAAAAGGAATTTTTATCCGAAAAAGGAATGTGTCAATAAAAAATATCCCAAATTGGATACGGGTAAAACAATTATACCAAAAAAAAAAAGGAATTTTTATCCGAAAAAGGAATGTGTAAAAAAACAGAAAATTTTCGAAAAAAGGATATGGTCAAAGGGGATGGATTTTACAAAAAGTTGCGCAACCGTATGACGATGATTTCTTACTAAATGGGATTAAAAAAAACTAGCGAAATGGAAAATTTGTCATCACAACGATTTAGAAAACGCCACGCCCCTCTTATGAAGCTTATGTGACAAGATTTCCTATCTTTCAGAATTTCAACTATTAAAACAGTGTCACACTCTCTCATTTTTCACCATTTGCACTATCCTCTCTAAAACCCTTAGACCCAAAACCTATCCAATTTTCTCTTTCCTTTCAGTAGCAATGGATTTGCTTCCACCTGGTGTTGGTTTCGTCCCTTCTGATGAACTCCTTGTTAGCTACTACCTTGCTAACAAAAACAATGAAGAGGTTCAAAATTTCCATGGTTCTGACTTGATTAAGGAGCTAAACCTGTACCAATATGATCCGTTTGAATTGCATCTTGCTCGGTCCTTTTTCTTCCCTCACACAAGGGAGTTTTACTGCTTCACTGCCAAAAGTGATGAGCTGAGGAGGCATTGTAAGACTGGATTTTGGATGCAGATGGGAGCTGTCGAAGACATTACTGTTGGAGCTGATGACGTGTTGGTGGGAAAGAAGTCTCTCTTCTTTTTTTATATAGGAAATTCCCCTCAGAACGCAATCAAAACTAGCTGGACTATGTACGAGTACACTCTTGTTAACAACCCTCATGTATGTCATTTGGGAAAACTAACTTTCACTATGTTCGTTATTTCATCGATGATTAATTTATGTATTGGTAACGACTAACTATTTTTTTAATATAAATAATTGTGTAGGCTCCTTTTGTTGTTTGCCGTGTTTTTGACCGCCATAGAGGGATGGATCTGGACTCTGAATTGTGGGCCTTATCTGATGTCGATGAAGGTGATGTTGTTGGTGACGACTCTGATGAGAAGGCGAATGAAGGAACTCAACAACTTAAGTGGGTTGGGACTAGTTATAGTGCTGATGCTAGTGCTGAGCAAGGTGATGCATTGCATTTCATGGCTACTCAAGCCACTTTTCAGGTAAAATATATTTCATTTTGATCTCTCGATATTTATTTTGTCATCGGCAACAATTTTACAATGCTTCACTTTCAATTAGACATGAGTTTGAACAAAATACCTCCATCATATGCGGGCCACAATATTAATGATTTTTATGTATGTATGACCAACTTTTAAATCATGGTCACACTATAGGTGGCTATTCAAAACCTTTATGTGTTGGTAGTTTTTGTGGTTGATGTTTGAATCCAAATAGCTCCATTGTGTTTGGATTATTTATGTTTTGCAGTTCCCAATTACAAAATTCTACATCCACAATTGTATCAAAAATTATGTTTAATTACGGAAGTCAATATTGGCAGTTAACCAGTTAATGTTGTTGATCCTCTTTGCAACTGAATTTTACAACTCAATTCATTCATGTGATGTTATTTTTTTTTTATTTTGATCAATTTTATTGAATGTATCACTCTGCACATGTTTTTTTCTTTCTTTTTTTCTTTTTTTTATGTAGAAATTAAGTGATGATCCTTAAAACATGTTAAAAATTAATACTAGTTAACATAGCTATTCTAACCTGATTCCTCAAAACATGTCCTTTTTATTTTTCTTTAAGTTTTTGTGGTATTAAATTCATTATTATTACTAATATAATCATCACTTTTTGACAAAGCATCTTTTCGTGTAATTTTATGGTGGAGAAAAGAAAGTGTTGTTGAAATATTGAATTTCTTTGTTTGATATTGATATTTATTAGGCGAGTTATGATGCATTTCTTGATTGTGTTGTGTCCCACGTGGAAGCTATGACGCCGGAGCAATTTAAGCTTGCAATTATGGACGAAGATTTTATTTAAATTGCTGATCTTATTTAAATTTATTGGTTTTTAAGACACTTGTGTCTAGTCCTGCTCTTGGGAGTATTTATCCCTTAAACATTTGTATTCATAATGGTCTGTTGACCCTCTTAGAACTCAGTTGATGGAACTTATCTTCTGATGTGGTTGATGCAATATTCATTGAATGTTCACGCCTCAATGATAATAAGGTAGTTATTATAAGATCTTTGCATGTTAAACTCTTGAGTCTGTATTTAAGAAATTATTCAGCATTTTTCTTCTTTGTTTTGGGCATGAAGATTTTTGTTCAATGCCTTATGA
Protein sequence

>MS.gene061708.t1

MISNEPVQKKIEAAALEEEMETVPHPQHQSTNSDISVQIPLEAASLEATLEMDATSQSQGDNIIDHADDIPVVTPTIVVTPISHCPAITNNTFSIQLENESDEIARNDLEENQEHILSPVKEKTLDVSSIVAPDGAPVDPVLQKDLDFMQTWLAKALANEVPFKECHTLSFFTICTILSKTLRPKTYPIFSFLSVAMDLLPPGVGFVPSDELLVSYYLANKNNEEVQNFHGSDLIKELNLYQYDPFELHLARSFFFPHTREFYCFTAKSDELRRHCKTGFWMQMGAVEDITVGADDVLVGKKSLFFFYIGNSPQNAIKTSWTMYEYTLVNNPHAPFVVCRVFDRHRGMDLDSELWALSDVDEGDVVGDDSDEKANEGTQQLKWVGTSYSADASAEQGDALHFMATQATFQNSVDGTYLLMWLMQYSLNVHASMIIRFLFNAL