AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061709

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061709.t1 MTR_1g047060 49.495 99 41 2 112 210 3 92 5.12e-23 89.0
MS.gene061709.t1 MTR_6g477900 32.911 158 82 7 4 146 6 154 3.30e-18 80.5
MS.gene061709.t1 MTR_2g086880 28.571 203 101 10 6 197 20 189 4.14e-18 82.4
MS.gene061709.t1 MTR_2g086880 28.571 203 101 10 6 197 20 189 4.33e-18 82.4
MS.gene061709.t1 MTR_1g008740 34.395 157 85 6 2 146 25 175 7.82e-18 80.9
MS.gene061709.t1 MTR_1g008740 34.395 157 85 6 2 146 11 161 8.69e-18 80.9
MS.gene061709.t1 MTR_4g101680 35.032 157 79 7 4 146 7 154 2.64e-17 79.7
MS.gene061709.t1 MTR_5g012080 33.333 159 81 8 4 146 7 156 3.79e-17 79.0
MS.gene061709.t1 MTR_7g100990 29.293 198 119 7 4 193 11 195 3.00e-16 76.3
MS.gene061709.t1 MTR_4g094302 31.013 158 85 7 4 147 11 158 3.03e-16 73.9
MS.gene061709.t1 MTR_3g109340 33.121 157 86 6 2 146 20 169 3.09e-16 76.6
MS.gene061709.t1 MTR_5g021710 32.468 154 87 5 4 146 8 155 3.42e-16 76.3
MS.gene061709.t1 MTR_5g041940 30.625 160 85 6 4 146 3 153 3.45e-16 75.1
MS.gene061709.t1 MTR_3g064580 33.125 160 80 7 4 146 6 155 3.58e-16 77.0
MS.gene061709.t1 MTR_4g036030 33.758 157 81 7 4 146 7 154 4.92e-16 75.9
MS.gene061709.t1 MTR_1g096430 31.288 163 92 6 1 149 1 157 5.28e-16 75.9
MS.gene061709.t1 MTR_3g093040 29.891 184 91 10 4 168 108 272 1.56e-15 73.9
MS.gene061709.t1 MTR_4g094302 34.109 129 76 5 4 132 11 130 1.87e-15 71.2
MS.gene061709.t1 MTR_4g081870 30.625 160 85 7 4 146 9 159 3.59e-15 72.8
MS.gene061709.t1 MTR_2g064090 30.573 157 88 7 4 146 6 155 4.92e-15 73.2
MS.gene061709.t1 MTR_2g093810 31.447 159 85 6 4 145 14 165 5.17e-15 72.8
MS.gene061709.t1 MTR_2g080010 29.341 167 87 5 4 146 15 174 1.21e-14 72.0
MS.gene061709.t1 MTR_8g059170 32.075 159 82 7 4 146 14 162 1.47e-14 71.6
MS.gene061709.t1 MTR_3g109340 31.410 156 89 6 2 146 20 168 1.68e-14 71.6
MS.gene061709.t1 MTR_2g079990 31.847 157 83 7 4 146 16 162 2.30e-14 71.2
MS.gene061709.t1 MTR_4g089135 33.088 136 78 4 4 133 15 143 3.04e-14 70.9
MS.gene061709.t1 MTR_7g105170 28.485 165 96 7 1 146 1 162 3.24e-14 69.7
MS.gene061709.t1 MTR_5g069030 30.909 165 82 9 1 146 22 173 3.39e-14 71.2
MS.gene061709.t1 MTR_8g023930 28.571 175 110 5 2 167 22 190 3.90e-14 70.9
MS.gene061709.t1 MTR_6g084430 31.818 154 85 6 4 146 5 149 7.25e-14 69.7
MS.gene061709.t1 MTR_3g096140 30.818 159 86 6 3 146 6 155 8.69e-14 68.9
MS.gene061709.t1 MTR_6g011860 28.814 177 94 7 1 154 12 179 1.26e-13 69.3
MS.gene061709.t1 MTR_3g096140 30.818 159 86 6 3 146 6 155 2.03e-13 68.6
MS.gene061709.t1 MTR_8g023900 29.936 157 89 7 2 145 10 158 2.60e-13 68.6
MS.gene061709.t1 MTR_8g023900 28.667 150 88 6 7 145 196 337 8.59e-11 61.2
MS.gene061709.t1 MTR_8g467490 27.976 168 90 7 2 146 12 171 3.61e-13 67.8
MS.gene061709.t1 MTR_8g023840 28.421 190 115 8 4 182 11 190 3.69e-13 67.8
MS.gene061709.t1 MTR_1g097300 32.653 147 79 6 6 144 21 155 4.29e-13 67.8
MS.gene061709.t1 MTR_3g088110 30.000 160 86 6 4 147 7 156 5.55e-13 66.6
MS.gene061709.t1 MTR_4g098630 29.744 195 112 11 4 183 6 190 1.17e-12 65.9
MS.gene061709.t1 MTR_3g116070 29.054 148 91 5 4 144 23 163 2.44e-12 65.5
MS.gene061709.t1 MTR_2g079990 32.394 142 79 6 4 138 16 147 2.50e-12 65.5
MS.gene061709.t1 MTR_1g090723 28.205 156 90 7 6 147 10 157 8.26e-12 64.3
MS.gene061709.t1 MTR_1g090723 28.205 156 90 7 6 147 10 157 8.90e-12 63.9
MS.gene061709.t1 MTR_4g075980 31.126 151 86 7 6 146 17 159 9.60e-12 63.2
MS.gene061709.t1 MTR_1g090720 32.099 162 84 6 4 146 42 196 1.18e-11 63.5
MS.gene061709.t1 MTR_2157s0010 28.402 169 85 9 4 146 8 166 2.36e-11 62.0
MS.gene061709.t1 MTR_0036s0150 27.273 154 94 6 6 147 7 154 2.92e-11 62.4
MS.gene061709.t1 MTR_1g090723 27.389 157 91 7 6 147 10 158 4.02e-11 62.0
MS.gene061709.t1 MTR_8g093580 29.560 159 86 7 4 146 6 154 4.96e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061709.t1 AT3G17730 33.544 158 81 8 4 146 6 154 8.10e-19 82.0
MS.gene061709.t1 AT2G24430 36.306 157 81 6 2 146 14 163 1.30e-18 82.8
MS.gene061709.t1 AT2G24430 36.306 157 81 6 2 146 14 163 1.30e-18 82.8
MS.gene061709.t1 AT2G27300 30.061 163 97 5 4 162 14 163 3.80e-18 81.6
MS.gene061709.t1 AT1G12260 36.306 157 77 8 4 146 7 154 5.60e-18 81.3
MS.gene061709.t1 AT1G12260 36.306 157 77 8 4 146 7 154 1.10e-17 80.9
MS.gene061709.t1 AT5G62380 32.642 193 94 8 4 168 7 191 2.18e-17 79.7
MS.gene061709.t1 AT5G62380 32.642 193 94 8 4 168 7 191 2.18e-17 79.7
MS.gene061709.t1 AT3G44290 29.167 144 92 4 6 145 16 153 4.95e-17 77.0
MS.gene061709.t1 AT3G10490 33.758 157 83 6 4 146 27 176 7.14e-17 76.6
MS.gene061709.t1 AT1G62700 34.395 157 80 7 4 146 7 154 7.38e-17 78.6
MS.gene061709.t1 AT1G62700 34.395 157 80 7 4 146 7 154 7.38e-17 78.6
MS.gene061709.t1 AT4G36160 32.468 154 87 5 4 146 10 157 7.43e-17 78.6
MS.gene061709.t1 AT4G36160 32.468 154 87 5 4 146 10 157 7.43e-17 78.6
MS.gene061709.t1 AT4G36160 32.468 154 87 5 4 146 14 161 7.51e-17 78.6
MS.gene061709.t1 AT1G76420 32.075 159 83 6 4 147 22 170 1.07e-16 77.8
MS.gene061709.t1 AT1G71930 31.210 157 91 5 4 149 9 159 2.05e-16 76.6
MS.gene061709.t1 AT1G71930 31.210 157 91 5 4 149 9 159 2.05e-16 76.6
MS.gene061709.t1 AT3G44290 29.167 144 92 4 6 145 16 153 2.21e-16 76.6
MS.gene061709.t1 AT4G27410 32.099 162 86 7 4 151 14 165 2.22e-16 76.3
MS.gene061709.t1 AT3G10490 33.758 157 83 6 4 146 27 176 4.26e-16 76.6
MS.gene061709.t1 AT2G18060 31.818 154 88 5 4 146 9 156 5.59e-16 75.9
MS.gene061709.t1 AT2G18060 31.818 154 88 5 4 146 9 156 5.59e-16 75.9
MS.gene061709.t1 AT1G65910 32.704 159 81 7 4 146 6 154 5.66e-16 76.3
MS.gene061709.t1 AT5G22290 31.034 145 89 5 6 145 23 161 6.33e-16 75.5
MS.gene061709.t1 AT3G10480 33.758 157 83 6 4 146 27 176 8.85e-16 75.5
MS.gene061709.t1 AT4G17980 31.056 161 83 6 4 145 6 157 1.15e-15 73.9
MS.gene061709.t1 AT4G17980 30.864 162 84 6 3 145 5 157 1.34e-15 73.9
MS.gene061709.t1 AT4G27410 30.114 176 88 7 4 151 14 182 3.09e-15 73.2
MS.gene061709.t1 AT1G69490 30.000 160 86 6 4 146 9 159 3.98e-15 72.4
MS.gene061709.t1 AT3G10480 33.333 156 84 6 4 146 27 175 4.28e-15 73.6
MS.gene061709.t1 AT5G17260 30.380 158 87 7 4 146 6 155 4.56e-15 73.6
MS.gene061709.t1 AT5G66300 31.646 158 84 7 4 146 12 160 4.58e-15 72.8
MS.gene061709.t1 AT1G26870 30.978 184 92 7 2 162 14 185 4.71e-15 73.6
MS.gene061709.t1 AT1G33280 32.000 175 91 9 4 165 8 167 9.70e-15 72.0
MS.gene061709.t1 AT1G54330 30.719 153 89 6 4 146 6 151 1.10e-14 71.6
MS.gene061709.t1 AT5G39610 31.646 158 84 7 4 146 20 168 1.39e-14 71.2
MS.gene061709.t1 AT5G24590 30.435 161 83 8 4 146 13 162 3.45e-14 70.9
MS.gene061709.t1 AT3G10500 32.692 156 85 6 4 146 9 157 3.85e-14 70.9
MS.gene061709.t1 AT5G08790 29.817 218 113 10 4 197 7 208 4.86e-14 69.7
MS.gene061709.t1 AT3G15500 31.250 160 80 7 4 146 14 160 1.08e-13 68.9
MS.gene061709.t1 AT3G29035 31.481 162 86 8 4 150 24 175 1.13e-13 68.9
MS.gene061709.t1 AT3G18400 32.692 156 84 9 4 147 5 151 1.14e-13 68.9
MS.gene061709.t1 AT2G02450 30.233 172 99 6 3 162 50 212 1.33e-13 69.3
MS.gene061709.t1 AT5G04410 30.380 158 86 6 4 146 9 157 1.71e-13 68.9
MS.gene061709.t1 AT1G32510 30.061 163 88 7 3 145 5 161 1.83e-13 68.2
MS.gene061709.t1 AT2G02450 30.233 172 99 6 3 162 50 212 2.04e-13 68.6
MS.gene061709.t1 AT1G52890 31.250 160 80 7 4 146 14 160 2.73e-13 67.8
MS.gene061709.t1 AT5G46590 32.374 139 80 6 4 135 6 137 2.81e-13 67.4
MS.gene061709.t1 AT5G64060 27.556 225 121 9 4 207 6 209 4.54e-13 67.4
MS.gene061709.t1 AT5G61430 29.448 163 91 6 4 151 16 169 5.41e-13 67.0
MS.gene061709.t1 AT5G04395 32.886 149 79 6 4 135 28 172 5.98e-13 65.1
MS.gene061709.t1 AT5G50820 33.824 136 75 6 4 135 17 141 9.53e-13 64.7
MS.gene061709.t1 AT3G15510 27.950 161 85 5 10 146 23 176 9.96e-13 66.6
MS.gene061709.t1 AT5G64530 28.866 194 104 6 4 176 3 183 1.13e-12 64.3
MS.gene061709.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.21e-12 66.6
MS.gene061709.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.21e-12 66.6
MS.gene061709.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.21e-12 66.6
MS.gene061709.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.21e-12 66.6
MS.gene061709.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.21e-12 66.6
MS.gene061709.t1 AT5G39820 34.058 138 76 5 2 132 18 147 1.39e-12 65.9
MS.gene061709.t1 AT5G64530 34.848 132 67 6 4 132 3 118 1.83e-12 63.2
MS.gene061709.t1 AT5G07680 29.878 164 89 7 4 151 3 156 3.90e-12 64.7
MS.gene061709.t1 AT5G07680 29.878 164 89 7 4 151 17 170 3.98e-12 64.7
MS.gene061709.t1 AT2G46770 26.906 223 122 8 4 194 16 229 5.22e-12 64.3
MS.gene061709.t1 AT3G04060 30.818 159 85 7 4 146 20 169 5.41e-12 64.3
MS.gene061709.t1 AT3G12977 28.000 175 102 7 4 163 18 183 7.97e-12 63.5
MS.gene061709.t1 AT5G18270 32.075 159 83 8 4 146 21 170 1.29e-11 63.2
MS.gene061709.t1 AT5G18270 32.075 159 83 8 4 146 21 170 1.36e-11 63.2

Find 55 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTTGGACTCTGAATTT+AGG 0.140254 1.3:+19390401 MS.gene061709:CDS
CCATGGTTCTGACCTGATTA+AGG 0.246294 1.3:+19389940 MS.gene061709:CDS
CCTCCTCTGCTCATCAGTTT+TGG 0.253784 1.3:-19390053 None:intergenic
CCACCCTAGAGGGATGAATT+TGG 0.272352 1.3:+19390387 MS.gene061709:CDS
GAATTTGGACTCTGAATTTA+GGG 0.274715 1.3:+19390402 MS.gene061709:CDS
CCTTGTGTGAGGGAAGAAAA+AGG 0.358153 1.3:-19390011 None:intergenic
GGCATTGTAAGACTGGATTC+TGG 0.399311 1.3:+19390074 MS.gene061709:CDS
GATTTGCTTCCACCTGGTGC+TGG 0.403266 1.3:+19389845 MS.gene061709:CDS
ACAGGTTCAGCTCCTTAATC+AGG 0.411998 1.3:-19389952 None:intergenic
TCTAGTGATGGTGCTGGTGC+TGG 0.412235 1.3:+19390520 MS.gene061709:CDS
AGGTGATGCATCGCGGTTCA+TGG 0.440949 1.3:+19390552 MS.gene061709:CDS
ACTCAGCAACTTAAAGCGGC+TGG 0.459648 1.3:+19390490 MS.gene061709:CDS
GCAATTCAAATGGATCATAC+TGG 0.470518 1.3:-19389976 None:intergenic
CTCAGCAACTTAAAGCGGCT+GGG 0.471655 1.3:+19390491 MS.gene061709:CDS
TGAGCAAGATGCAATTCAAA+TGG 0.471704 1.3:-19389986 None:intergenic
CAGAGGAGGCATTGTAAGAC+TGG 0.471934 1.3:+19390067 MS.gene061709:CDS
GGCTACTCAAGCCACTCTTT+AGG 0.473252 1.3:+19390573 MS.gene061709:CDS
GCTGGTGCTGGTGCTGAGCA+AGG 0.476489 1.3:+19390532 MS.gene061709:CDS
AAAACACGGCAAACAACAAA+AGG 0.482067 1.3:-19390361 None:intergenic
CAAATGGATCATACTGGTAC+AGG 0.492656 1.3:-19389970 None:intergenic
GAAGATGTTCAGAATTTCCA+TGG 0.508550 1.3:+19389923 MS.gene061709:CDS
TGGAGCTGATGACGTGTTGG+TGG 0.510033 1.3:+19390129 MS.gene061709:CDS
GAGTCCAAATTCATCCCTCT+AGG 0.526556 1.3:-19390391 None:intergenic
GCTGTCAGAGACATTACTGC+TGG 0.527123 1.3:+19390109 MS.gene061709:CDS
TCTGATGACAAGGCGAATGA+AGG 0.528665 1.3:+19390466 MS.gene061709:CDS
GCAATGGATTTGCTTCCACC+TGG 0.532019 1.3:+19389839 None:intergenic
AGAACGCGATCAAAACTAGC+TGG 0.546737 1.3:+19390194 MS.gene061709:CDS
CACTCTTGTTAACAACCCTC+AGG 0.546751 1.3:+19390231 MS.gene061709:CDS
GCTAGTTCTAGTGATGGTGC+TGG 0.549559 1.3:+19390514 MS.gene061709:CDS
ACCTTCACCTACATCAGATA+AGG 0.551670 1.3:-19390425 None:intergenic
TTTAGGGCCTTATCTGATGT+AGG 0.555385 1.3:+19390418 MS.gene061709:CDS
TGCTGGAGCTGATGACGTGT+TGG 0.559512 1.3:+19390126 MS.gene061709:CDS
GAAGGGACGAAGCCAGCACC+AGG 0.569334 1.3:-19389857 None:intergenic
TCAGCAACTTAAAGCGGCTG+GGG 0.574795 1.3:+19390492 MS.gene061709:CDS
CAGTAAAACTCCCTTGTGTG+AGG 0.577220 1.3:-19390022 None:intergenic
GACTGGATTCTGGATGCAGA+AGG 0.580380 1.3:+19390084 MS.gene061709:CDS
CCAAAACTGATGAGCAGAGG+AGG 0.581988 1.3:+19390053 MS.gene061709:CDS
TGGCAAGGTAATAGCTAACA+AGG 0.592858 1.3:-19389889 None:intergenic
GCCTTATCTGATGTAGGTGA+AGG 0.597039 1.3:+19390424 MS.gene061709:CDS
AGTAAAACTCCCTTGTGTGA+GGG 0.603789 1.3:-19390021 None:intergenic
AGTCCAAATTCATCCCTCTA+GGG 0.605368 1.3:-19390390 None:intergenic
GTAGGTGAAGGTGATGCTGC+TGG 0.606109 1.3:+19390436 MS.gene061709:CDS
ACTGGATTCTGGATGCAGAA+GGG 0.607334 1.3:+19390085 MS.gene061709:CDS
GCTGGGGCTAGTTCTAGTGA+TGG 0.621987 1.3:+19390508 MS.gene061709:CDS
CCTTAATCAGGTCAGAACCA+TGG 0.626777 1.3:-19389940 None:intergenic
AATATATGTTACCTAAAGAG+TGG 0.627745 1.3:-19390584 None:intergenic
AGGAACTCAGCAACTTAAAG+CGG 0.631713 1.3:+19390486 MS.gene061709:CDS
TAACAAGGAGTTCATCAGAA+GGG 0.633655 1.3:-19389874 None:intergenic
GGGACGAAGCCAGCACCAGG+TGG 0.645386 1.3:-19389854 None:intergenic
GGAGCTGATGACGTGTTGGT+GGG 0.653652 1.3:+19390130 MS.gene061709:CDS
TGGTGATGACTCTGATGACA+AGG 0.654459 1.3:+19390456 MS.gene061709:CDS
CTGCCAAAACTGATGAGCAG+AGG 0.655541 1.3:+19390050 MS.gene061709:CDS
CTAACAAGGAGTTCATCAGA+AGG 0.667376 1.3:-19389875 None:intergenic
CCAAATTCATCCCTCTAGGG+TGG 0.667792 1.3:-19390387 None:intergenic
CTGAGCAAGGTGATGCATCG+CGG 0.677590 1.3:+19390545 MS.gene061709:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATAAATAATTGTGC+AGG + chr1.3:19390336-19390355 MS.gene061709:intron 15.0%
!! TCGATGATTAATTAATGTAT+TGG + chr1.3:19390298-19390317 MS.gene061709:intron 20.0%
!! TCTCTCTTCTTTTTCTATAT+AGG + chr1.3:19390160-19390179 MS.gene061709:CDS 25.0%
!!! AACATCTTCATTGTTTTTGT+TGG - chr1.3:19389912-19389931 None:intergenic 25.0%
GAATTTGGACTCTGAATTTA+GGG + chr1.3:19390402-19390421 MS.gene061709:CDS 30.0%
TGAATTTGGACTCTGAATTT+AGG + chr1.3:19390401-19390420 MS.gene061709:CDS 30.0%
AAAACACGGCAAACAACAAA+AGG - chr1.3:19390364-19390383 None:intergenic 35.0%
ATCGATTGAATAACGAGCAT+AGG - chr1.3:19390283-19390302 None:intergenic 35.0%
GAAGATGTTCAGAATTTCCA+TGG + chr1.3:19389923-19389942 MS.gene061709:CDS 35.0%
GCAATTCAAATGGATCATAC+TGG - chr1.3:19389979-19389998 None:intergenic 35.0%
TAACAAGGAGTTCATCAGAA+GGG - chr1.3:19389877-19389896 None:intergenic 35.0%
TCGATTGAATAACGAGCATA+GGG - chr1.3:19390282-19390301 None:intergenic 35.0%
TGAGCAAGATGCAATTCAAA+TGG - chr1.3:19389989-19390008 None:intergenic 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG - chr1.3:19389907-19389926 None:intergenic 35.0%
ACCTTCACCTACATCAGATA+AGG - chr1.3:19390428-19390447 None:intergenic 40.0%
AGGAACTCAGCAACTTAAAG+CGG + chr1.3:19390486-19390505 MS.gene061709:CDS 40.0%
AGTAAAACTCCCTTGTGTGA+GGG - chr1.3:19390024-19390043 None:intergenic 40.0%
AGTCCAAATTCATCCCTCTA+GGG - chr1.3:19390393-19390412 None:intergenic 40.0%
CAAATGGATCATACTGGTAC+AGG - chr1.3:19389973-19389992 None:intergenic 40.0%
CTAACAAGGAGTTCATCAGA+AGG - chr1.3:19389878-19389897 None:intergenic 40.0%
TGGCAAGGTAATAGCTAACA+AGG - chr1.3:19389892-19389911 None:intergenic 40.0%
TTCCCAAATGACATACCTGA+GGG - chr1.3:19390249-19390268 None:intergenic 40.0%
TTTCCCAAATGACATACCTG+AGG - chr1.3:19390250-19390269 None:intergenic 40.0%
! AACCCTCAGGTATGTCATTT+GGG + chr1.3:19390244-19390263 MS.gene061709:intron 40.0%
! CTTTTTCTTCCCTCACACAA+GGG + chr1.3:19390012-19390031 MS.gene061709:CDS 40.0%
! TTTAGGGCCTTATCTGATGT+AGG + chr1.3:19390418-19390437 MS.gene061709:CDS 40.0%
!!! TAGTTTTGATCGCGTTCTGA+GGG - chr1.3:19390192-19390211 None:intergenic 40.0%
ACAGGTTCAGCTCCTTAATC+AGG - chr1.3:19389955-19389974 None:intergenic 45.0%
ACTGGATTCTGGATGCAGAA+GGG + chr1.3:19390085-19390104 MS.gene061709:CDS 45.0%
AGAACGCGATCAAAACTAGC+TGG + chr1.3:19390194-19390213 MS.gene061709:CDS 45.0%
CAACCCTCAGGTATGTCATT+TGG + chr1.3:19390243-19390262 MS.gene061709:intron 45.0%
CACTCTTGTTAACAACCCTC+AGG + chr1.3:19390231-19390250 MS.gene061709:CDS 45.0%
CAGTAAAACTCCCTTGTGTG+AGG - chr1.3:19390025-19390044 None:intergenic 45.0%
CCTTAATCAGGTCAGAACCA+TGG - chr1.3:19389943-19389962 None:intergenic 45.0%
CCTTGTGTGAGGGAAGAAAA+AGG - chr1.3:19390014-19390033 None:intergenic 45.0%
GAGTCCAAATTCATCCCTCT+AGG - chr1.3:19390394-19390413 None:intergenic 45.0%
GCCTTATCTGATGTAGGTGA+AGG + chr1.3:19390424-19390443 MS.gene061709:CDS 45.0%
GGCATTGTAAGACTGGATTC+TGG + chr1.3:19390074-19390093 MS.gene061709:CDS 45.0%
TCTGATGACAAGGCGAATGA+AGG + chr1.3:19390466-19390485 MS.gene061709:CDS 45.0%
! CCTTTTTCTTCCCTCACACA+AGG + chr1.3:19390011-19390030 MS.gene061709:CDS 45.0%
! TGGTGATGACTCTGATGACA+AGG + chr1.3:19390456-19390475 MS.gene061709:CDS 45.0%
!! AGTTTTGATCGCGTTCTGAG+GGG - chr1.3:19390191-19390210 None:intergenic 45.0%
!! CCATGGTTCTGACCTGATTA+AGG + chr1.3:19389940-19389959 MS.gene061709:CDS 45.0%
!! CTCTAGGGTGGTCAAAAACA+CGG - chr1.3:19390378-19390397 None:intergenic 45.0%
!! GTGTTTTTGACCACCCTAGA+GGG + chr1.3:19390377-19390396 MS.gene061709:CDS 45.0%
!!! CTAGTTTTGATCGCGTTCTG+AGG - chr1.3:19390193-19390212 None:intergenic 45.0%
ACTCAGCAACTTAAAGCGGC+TGG + chr1.3:19390490-19390509 MS.gene061709:CDS 50.0%
CCAAAACTGATGAGCAGAGG+AGG + chr1.3:19390053-19390072 MS.gene061709:CDS 50.0%
CCACCCTAGAGGGATGAATT+TGG + chr1.3:19390387-19390406 MS.gene061709:CDS 50.0%
CTCAGCAACTTAAAGCGGCT+GGG + chr1.3:19390491-19390510 MS.gene061709:CDS 50.0%
CTGCCAAAACTGATGAGCAG+AGG + chr1.3:19390050-19390069 MS.gene061709:CDS 50.0%
GACTGGATTCTGGATGCAGA+AGG + chr1.3:19390084-19390103 MS.gene061709:CDS 50.0%
GCTGTCAGAGACATTACTGC+TGG + chr1.3:19390109-19390128 MS.gene061709:CDS 50.0%
TCAGCAACTTAAAGCGGCTG+GGG + chr1.3:19390492-19390511 MS.gene061709:CDS 50.0%
! CCAAATTCATCCCTCTAGGG+TGG - chr1.3:19390390-19390409 None:intergenic 50.0%
! CCTCCTCTGCTCATCAGTTT+TGG - chr1.3:19390056-19390075 None:intergenic 50.0%
!! CAGAGGAGGCATTGTAAGAC+TGG + chr1.3:19390067-19390086 MS.gene061709:CDS 50.0%
!! CGTGTTTTTGACCACCCTAG+AGG + chr1.3:19390376-19390395 MS.gene061709:CDS 50.0%
!! GCTAGTTCTAGTGATGGTGC+TGG + chr1.3:19390514-19390533 MS.gene061709:CDS 50.0%
AGGTGATGCATCGCGGTTCA+TGG + chr1.3:19390552-19390571 MS.gene061709:CDS 55.0%
CTGAGCAAGGTGATGCATCG+CGG + chr1.3:19390545-19390564 MS.gene061709:CDS 55.0%
GTAGGTGAAGGTGATGCTGC+TGG + chr1.3:19390436-19390455 MS.gene061709:CDS 55.0%
! GATTTGCTTCCACCTGGTGC+TGG + chr1.3:19389845-19389864 MS.gene061709:CDS 55.0%
! GGAGCTGATGACGTGTTGGT+GGG + chr1.3:19390130-19390149 MS.gene061709:CDS 55.0%
! TGCTGGAGCTGATGACGTGT+TGG + chr1.3:19390126-19390145 MS.gene061709:CDS 55.0%
! TGGAGCTGATGACGTGTTGG+TGG + chr1.3:19390129-19390148 MS.gene061709:CDS 55.0%
!! GCTGGGGCTAGTTCTAGTGA+TGG + chr1.3:19390508-19390527 MS.gene061709:CDS 55.0%
!! TCTAGTGATGGTGCTGGTGC+TGG + chr1.3:19390520-19390539 MS.gene061709:CDS 55.0%
GAAGGGACGAAGCCAGCACC+AGG - chr1.3:19389860-19389879 None:intergenic 65.0%
!! GCTGGTGCTGGTGCTGAGCA+AGG + chr1.3:19390532-19390551 MS.gene061709:CDS 65.0%
GGGACGAAGCCAGCACCAGG+TGG - chr1.3:19389857-19389876 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 19389842 19390594 19389842 ID=MS.gene061709
chr1.3 mRNA 19389842 19390594 19389842 ID=MS.gene061709.t1;Parent=MS.gene061709
chr1.3 exon 19389842 19390252 19389842 ID=MS.gene061709.t1.exon1;Parent=MS.gene061709.t1
chr1.3 CDS 19389842 19390252 19389842 ID=cds.MS.gene061709.t1;Parent=MS.gene061709.t1
chr1.3 exon 19390358 19390594 19390358 ID=MS.gene061709.t1.exon2;Parent=MS.gene061709.t1
chr1.3 CDS 19390358 19390594 19390358 ID=cds.MS.gene061709.t1;Parent=MS.gene061709.t1
Gene Sequence

>MS.gene061709

ATGGATTTGCTTCCACCTGGTGCTGGCTTCGTCCCTTCTGATGAACTCCTTGTTAGCTATTACCTTGCCAACAAAAACAATGAAGATGTTCAGAATTTCCATGGTTCTGACCTGATTAAGGAGCTGAACCTGTACCAGTATGATCCATTTGAATTGCATCTTGCTCAATCCTTTTTCTTCCCTCACACAAGGGAGTTTTACTGCTTCACTGCCAAAACTGATGAGCAGAGGAGGCATTGTAAGACTGGATTCTGGATGCAGAAGGGAGCTGTCAGAGACATTACTGCTGGAGCTGATGACGTGTTGGTGGGAAAGAAGTCTCTCTTCTTTTTCTATATAGGAAATTCCCCTCAGAACGCGATCAAAACTAGCTGGACTATGTACGAGTACACTCTTGTTAACAACCCTCAGGTATGTCATTTGGGAAAACTAACTTTCCCTATGCTCGTTATTCAATCGATGATTAATTAATGTATTGGTAATGACTAACTATTTTTTATATAAATAATTGTGCAGGATCCTTTTGTTGTTTGCCGTGTTTTTGACCACCCTAGAGGGATGAATTTGGACTCTGAATTTAGGGCCTTATCTGATGTAGGTGAAGGTGATGCTGCTGGTGATGACTCTGATGACAAGGCGAATGAAGGAACTCAGCAACTTAAAGCGGCTGGGGCTAGTTCTAGTGATGGTGCTGGTGCTGGTGCTGAGCAAGGTGATGCATCGCGGTTCATGGCTACTCAAGCCACTCTTTAG
Protein sequence

>MS.gene061709.t1

MDLLPPGAGFVPSDELLVSYYLANKNNEDVQNFHGSDLIKELNLYQYDPFELHLAQSFFFPHTREFYCFTAKTDEQRRHCKTGFWMQKGAVRDITAGADDVLVGKKSLFFFYIGNSPQNAIKTSWTMYEYTLVNNPQDPFVVCRVFDHPRGMNLDSEFRALSDVGEGDAAGDDSDDKANEGTQQLKAAGASSSDGAGAGAEQGDASRFMATQATL