Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061721.t1 | RHN63666.1 | 65.1 | 255 | 48 | 5 | 30 | 246 | 22 | 273 | 1.30E-74 | 289.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061721.t1 | Q9M9U9 | 68.7 | 115 | 35 | 1 | 125 | 238 | 125 | 239 | 1.1e-26 | 121.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061721.t1 | A0A396IDK0 | 65.1 | 255 | 48 | 5 | 30 | 246 | 22 | 273 | 9.5e-75 | 289.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene061721.t1 | TF | RWP-RK |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061721.t1 | MTR_0140s0010 | 62.447 | 237 | 34 | 6 | 30 | 228 | 1 | 220 | 7.34e-85 | 253 |
MS.gene061721.t1 | MTR_3g435550 | 53.757 | 173 | 67 | 4 | 82 | 245 | 5 | 173 | 1.20e-52 | 169 |
MS.gene061721.t1 | MTR_3g091700 | 53.704 | 108 | 41 | 2 | 133 | 240 | 159 | 257 | 4.27e-30 | 113 |
MS.gene061721.t1 | MTR_5g024070 | 35.802 | 162 | 89 | 3 | 85 | 242 | 169 | 319 | 4.32e-23 | 95.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061721.t1 | AT1G18790 | 65.217 | 115 | 39 | 1 | 125 | 238 | 125 | 239 | 2.94e-47 | 158 |
MS.gene061721.t1 | AT1G74480 | 40.928 | 237 | 120 | 6 | 16 | 234 | 8 | 242 | 2.75e-44 | 151 |
MS.gene061721.t1 | AT5G66990 | 58.678 | 121 | 48 | 2 | 122 | 240 | 153 | 273 | 1.89e-41 | 143 |
MS.gene061721.t1 | AT5G53040 | 55.856 | 111 | 40 | 1 | 128 | 238 | 148 | 249 | 8.27e-34 | 122 |
MS.gene061721.t1 | AT4G35590 | 34.667 | 150 | 89 | 3 | 92 | 235 | 157 | 303 | 3.93e-19 | 85.1 |
MS.gene061721.t1 | AT4G35590 | 34.667 | 150 | 89 | 3 | 92 | 235 | 207 | 353 | 6.84e-19 | 85.1 |
MS.gene061721.t1 | AT5G16100 | 41.176 | 85 | 48 | 1 | 125 | 207 | 351 | 435 | 1.07e-13 | 70.5 |
Find 56 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTTGCAGCTTGTGTTAT+TGG | 0.135392 | 8.1:+16687707 | None:intergenic |
TGACTTACATGTTAGGAAAT+TGG | 0.240258 | 8.1:+16688334 | None:intergenic |
GTTGATGGATATCGAGAAAT+TGG | 0.245834 | 8.1:-16687414 | MS.gene061721:CDS |
AATTGGCGGTTATATGAAAA+TGG | 0.251270 | 8.1:+16688351 | None:intergenic |
TGATCTTGCAATTGTATATC+TGG | 0.302877 | 8.1:+16687362 | None:intergenic |
AACCTTGATCAATAATATTC+AGG | 0.325902 | 8.1:-16687597 | MS.gene061721:intron |
ACAATGTTGTCTAAGCCTTT+TGG | 0.326924 | 8.1:+16687337 | None:intergenic |
TTACAAGAAAAGAAAGCTTA+TGG | 0.338403 | 8.1:-16687303 | MS.gene061721:CDS |
CTGCAGACGACTATGAAATT+TGG | 0.367816 | 8.1:-16687919 | MS.gene061721:intron |
ACTTAGTGTTGAAAAGTTGA+TGG | 0.379342 | 8.1:-16687429 | MS.gene061721:CDS |
TATTATTGATCAAGGTTTGC+AGG | 0.383508 | 8.1:+16687603 | None:intergenic |
ACCCATACACAATGATGGTT+TGG | 0.385554 | 8.1:-16688185 | MS.gene061721:CDS |
TTCCAAACCATCATTGTGTA+TGG | 0.398088 | 8.1:+16688183 | None:intergenic |
ACACAATGATGGTTTGGAAC+TGG | 0.400074 | 8.1:-16688179 | MS.gene061721:CDS |
AGTTTCATGACTTACATGTT+AGG | 0.400997 | 8.1:+16688327 | None:intergenic |
TACCTGAATATTATTGATCA+AGG | 0.420609 | 8.1:+16687595 | None:intergenic |
TATGGTATGGAGAAAGGATT+TGG | 0.421835 | 8.1:-16687896 | MS.gene061721:CDS |
TGATGATAACCTTCCAGCCT+TGG | 0.426088 | 8.1:+16688094 | None:intergenic |
TGAAATTAACAAAGAGGTTG+TGG | 0.431311 | 8.1:-16687816 | MS.gene061721:CDS |
GGCATTGGTTCAATGTATAG+AGG | 0.437542 | 8.1:+16688115 | None:intergenic |
ATTTGGTATGGTATGGAGAA+AGG | 0.442668 | 8.1:-16687902 | MS.gene061721:CDS |
TGTATAGAGGGTGATGATGA+GGG | 0.456423 | 8.1:+16688128 | None:intergenic |
AGAGTATGCCACTTACTTGT+TGG | 0.466970 | 8.1:-16688401 | MS.gene061721:CDS |
CATTGAACCAATGCCAAGGC+TGG | 0.480155 | 8.1:-16688107 | MS.gene061721:CDS |
CTATGAAATTTGGTATGGTA+TGG | 0.481213 | 8.1:-16687909 | MS.gene061721:CDS |
AGAGGAAATGAAGCTGGTGG+AGG | 0.485504 | 8.1:-16687390 | MS.gene061721:CDS |
GTTGCAGGAGCTAGGGAAAG+AGG | 0.496134 | 8.1:-16687459 | MS.gene061721:intron |
TGGATTTGGTTGCAGGAGCT+AGG | 0.503102 | 8.1:-16687467 | MS.gene061721:intron |
GGAGTGGAGAGGATTAGTGA+TGG | 0.512454 | 8.1:-16687779 | MS.gene061721:CDS |
GGATTTGGTTGCAGGAGCTA+GGG | 0.512821 | 8.1:-16687466 | MS.gene061721:intron |
GGAGGTAAAGCTAGAAGGAG+TGG | 0.514082 | 8.1:-16687795 | MS.gene061721:CDS |
ATGTATAGAGGGTGATGATG+AGG | 0.517675 | 8.1:+16688127 | None:intergenic |
GTTGTGGAGGTAAAGCTAGA+AGG | 0.522008 | 8.1:-16687800 | MS.gene061721:CDS |
TAAAAGCTCCAACAAGTAAG+TGG | 0.525627 | 8.1:+16688393 | None:intergenic |
TAACCTTCCAGCCTTGGCAT+TGG | 0.526844 | 8.1:+16688100 | None:intergenic |
TATTCACCCATACACAATGA+TGG | 0.527857 | 8.1:-16688190 | MS.gene061721:CDS |
GGATATCGAGAAATTGGAAG+AGG | 0.537710 | 8.1:-16687408 | MS.gene061721:CDS |
GACGACTATGAAATTTGGTA+TGG | 0.546215 | 8.1:-16687914 | MS.gene061721:CDS |
CTTACATGTTAGGAAATTGG+CGG | 0.547072 | 8.1:+16688337 | None:intergenic |
ATTGGAAGAGGAAATGAAGC+TGG | 0.556172 | 8.1:-16687396 | MS.gene061721:CDS |
AATTGCAAGATCATACCAAA+AGG | 0.561321 | 8.1:-16687352 | MS.gene061721:CDS |
TAAAGCTAGAAGGAGTGGAG+AGG | 0.578999 | 8.1:-16687790 | MS.gene061721:CDS |
GAACCAATGCCAAGGCTGGA+AGG | 0.579018 | 8.1:-16688103 | MS.gene061721:intron |
GTATAGAGGGTGATGATGAG+GGG | 0.582910 | 8.1:+16688129 | None:intergenic |
TCCAAACCATCATTGTGTAT+GGG | 0.593952 | 8.1:+16688184 | None:intergenic |
GCATTGGTTCAATGTATAGA+GGG | 0.595733 | 8.1:+16688116 | None:intergenic |
TGGAAATGAAATTAACAAAG+AGG | 0.597270 | 8.1:-16687822 | MS.gene061721:CDS |
AGCTGCAAGAGAACTGAATG+TGG | 0.601755 | 8.1:-16687696 | MS.gene061721:CDS |
GTAGGGAGTTGGGTATTCGT+AGG | 0.615855 | 8.1:-16687649 | MS.gene061721:CDS |
AATTAACAAAGAGGTTGTGG+AGG | 0.641037 | 8.1:-16687813 | MS.gene061721:CDS |
GCTGCAAGAGAACTGAATGT+GGG | 0.643443 | 8.1:-16687695 | MS.gene061721:CDS |
GGGAGTTGGGTATTCGTAGG+TGG | 0.654663 | 8.1:-16687646 | MS.gene061721:CDS |
GTAACACAAAGAATTTGTCA+AGG | 0.655690 | 8.1:-16687757 | MS.gene061721:CDS |
GGAAGAGGAAATGAAGCTGG+TGG | 0.660598 | 8.1:-16687393 | MS.gene061721:CDS |
CAGGAGCTAGGGAAAGAGGA+TGG | 0.660990 | 8.1:-16687455 | MS.gene061721:CDS |
TATACATTGAACCAATGCCA+AGG | 0.667387 | 8.1:-16688111 | MS.gene061721:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTATTCTCATTTTAAATTT+TGG | - | chr8.1:16687665-16687684 | MS.gene061721:CDS | 10.0% |
!!! | AATTTATTTAATTTTTGCAG+TGG | - | chr8.1:16687462-16687481 | MS.gene061721:intron | 15.0% |
!! | CATATAAAAATACTGAGATA+TGG | + | chr8.1:16687961-16687980 | None:intergenic | 20.0% |
!! | CATGCAAAAATTTATTACTT+CGG | - | chr8.1:16687420-16687439 | MS.gene061721:CDS | 20.0% |
!!! | AACATTATGTTGATTGTTTA+TGG | - | chr8.1:16688184-16688203 | MS.gene061721:CDS | 20.0% |
! | AACCTTGATCAATAATATTC+AGG | - | chr8.1:16688091-16688110 | MS.gene061721:intron | 25.0% |
! | CTTATAAATAATTGGGAATG+TGG | + | chr8.1:16687633-16687652 | None:intergenic | 25.0% |
! | TACCTGAATATTATTGATCA+AGG | + | chr8.1:16688096-16688115 | None:intergenic | 25.0% |
! | TGAGTATATTATGTTGGATT+TGG | - | chr8.1:16688207-16688226 | MS.gene061721:CDS | 25.0% |
! | TGGAAATGAAATTAACAAAG+AGG | - | chr8.1:16687866-16687885 | MS.gene061721:CDS | 25.0% |
! | TGTTCTTCTGATTAATATTG+TGG | - | chr8.1:16687740-16687759 | MS.gene061721:CDS | 25.0% |
! | TTACAAGAAAAGAAAGCTTA+TGG | - | chr8.1:16688385-16688404 | MS.gene061721:CDS | 25.0% |
! | TTATGGTGAGTATATTATGT+TGG | - | chr8.1:16688201-16688220 | MS.gene061721:CDS | 25.0% |
!! | AAGCTTTCTTTTCTTGTAAT+TGG | + | chr8.1:16688384-16688403 | None:intergenic | 25.0% |
!! | CGAAGTAATAAATTTTTGCA+TGG | + | chr8.1:16687422-16687441 | None:intergenic | 25.0% |
!!! | CTCATTTTAAATTTTGGTTG+CGG | - | chr8.1:16687671-16687690 | MS.gene061721:CDS | 25.0% |
AATTGCAAGATCATACCAAA+AGG | - | chr8.1:16688336-16688355 | MS.gene061721:intron | 30.0% | |
AATTGGCGGTTATATGAAAA+TGG | + | chr8.1:16687340-16687359 | None:intergenic | 30.0% | |
ACATTTGAAAAAACGGTGTA+GGG | - | chr8.1:16688022-16688041 | MS.gene061721:intron | 30.0% | |
AGTTTCATGACTTACATGTT+AGG | + | chr8.1:16687364-16687383 | None:intergenic | 30.0% | |
CTATGAAATTTGGTATGGTA+TGG | - | chr8.1:16687779-16687798 | MS.gene061721:CDS | 30.0% | |
GTAACACAAAGAATTTGTCA+AGG | - | chr8.1:16687931-16687950 | MS.gene061721:intron | 30.0% | |
TATTATTGATCAAGGTTTGC+AGG | + | chr8.1:16688088-16688107 | None:intergenic | 30.0% | |
TCTGATTAATATTGTGGTTG+TGG | - | chr8.1:16687746-16687765 | MS.gene061721:CDS | 30.0% | |
TGAAATTAACAAAGAGGTTG+TGG | - | chr8.1:16687872-16687891 | MS.gene061721:CDS | 30.0% | |
TGACTTACATGTTAGGAAAT+TGG | + | chr8.1:16687357-16687376 | None:intergenic | 30.0% | |
TGATCTTGCAATTGTATATC+TGG | + | chr8.1:16688329-16688348 | None:intergenic | 30.0% | |
! | ACTTAGTGTTGAAAAGTTGA+TGG | - | chr8.1:16688259-16688278 | MS.gene061721:intron | 30.0% |
!! | GCTTAGACAACATTGTTTTA+AGG | - | chr8.1:16688358-16688377 | MS.gene061721:CDS | 30.0% |
AATTAACAAAGAGGTTGTGG+AGG | - | chr8.1:16687875-16687894 | MS.gene061721:CDS | 35.0% | |
ATTTGGTATGGTATGGAGAA+AGG | - | chr8.1:16687786-16687805 | MS.gene061721:CDS | 35.0% | |
CACATTTGAAAAAACGGTGT+AGG | - | chr8.1:16688021-16688040 | MS.gene061721:intron | 35.0% | |
CTTACATGTTAGGAAATTGG+CGG | + | chr8.1:16687354-16687373 | None:intergenic | 35.0% | |
GACGACTATGAAATTTGGTA+TGG | - | chr8.1:16687774-16687793 | MS.gene061721:CDS | 35.0% | |
GCCTCACACATTTGAAAAAA+CGG | - | chr8.1:16688015-16688034 | MS.gene061721:intron | 35.0% | |
TAAAAGCTCCAACAAGTAAG+TGG | + | chr8.1:16687298-16687317 | None:intergenic | 35.0% | |
TATACATTGAACCAATGCCA+AGG | - | chr8.1:16687577-16687596 | MS.gene061721:intron | 35.0% | |
TATGGTATGGAGAAAGGATT+TGG | - | chr8.1:16687792-16687811 | MS.gene061721:CDS | 35.0% | |
TATTCACCCATACACAATGA+TGG | - | chr8.1:16687498-16687517 | MS.gene061721:intron | 35.0% | |
TCCAAACCATCATTGTGTAT+GGG | + | chr8.1:16687507-16687526 | None:intergenic | 35.0% | |
TTCCAAACCATCATTGTGTA+TGG | + | chr8.1:16687508-16687527 | None:intergenic | 35.0% | |
! | ACAATGTTGTCTAAGCCTTT+TGG | + | chr8.1:16688354-16688373 | None:intergenic | 35.0% |
! | ATTATGTTGGATTTGGTTGC+AGG | - | chr8.1:16688214-16688233 | MS.gene061721:intron | 35.0% |
! | GCGTTTGATTCTGAAAAAAG+TGG | - | chr8.1:16687846-16687865 | MS.gene061721:CDS | 35.0% |
! | GTTGATGGATATCGAGAAAT+TGG | - | chr8.1:16688274-16688293 | MS.gene061721:intron | 35.0% |
!! | GCATTGGTTCAATGTATAGA+GGG | + | chr8.1:16687575-16687594 | None:intergenic | 35.0% |
!!! | ACCGTTTTTTCAAATGTGTG+AGG | + | chr8.1:16688019-16688038 | None:intergenic | 35.0% |
AAAAAACGGTGTAGGGAGTT+GGG | - | chr8.1:16688029-16688048 | MS.gene061721:intron | 40.0% | |
ACCCATACACAATGATGGTT+TGG | - | chr8.1:16687503-16687522 | MS.gene061721:intron | 40.0% | |
ATTGGAAGAGGAAATGAAGC+TGG | - | chr8.1:16688292-16688311 | MS.gene061721:intron | 40.0% | |
CTGCAGACGACTATGAAATT+TGG | - | chr8.1:16687769-16687788 | MS.gene061721:CDS | 40.0% | |
GGATATCGAGAAATTGGAAG+AGG | - | chr8.1:16688280-16688299 | MS.gene061721:intron | 40.0% | |
TCTCTTGCAGCTTGTGTTAT+TGG | + | chr8.1:16687984-16688003 | None:intergenic | 40.0% | |
TTGGGAATGTGGCATGTATA+TGG | + | chr8.1:16687622-16687641 | None:intergenic | 40.0% | |
! | ACACAATGATGGTTTGGAAC+TGG | - | chr8.1:16687509-16687528 | MS.gene061721:intron | 40.0% |
! | AGAGTATGCCACTTACTTGT+TGG | - | chr8.1:16687287-16687306 | MS.gene061721:CDS | 40.0% |
! | AGGCTCATGAGTTTTCTATG+GGG | + | chr8.1:16688068-16688087 | None:intergenic | 40.0% |
! | ATGTATAGAGGGTGATGATG+AGG | + | chr8.1:16687564-16687583 | None:intergenic | 40.0% |
! | CAGGCTCATGAGTTTTCTAT+GGG | + | chr8.1:16688069-16688088 | None:intergenic | 40.0% |
! | TGTATAGAGGGTGATGATGA+GGG | + | chr8.1:16687563-16687582 | None:intergenic | 40.0% |
!! | GGCATTGGTTCAATGTATAG+AGG | + | chr8.1:16687576-16687595 | None:intergenic | 40.0% |
AGCTGCAAGAGAACTGAATG+TGG | - | chr8.1:16687992-16688011 | MS.gene061721:intron | 45.0% | |
GAAAAAACGGTGTAGGGAGT+TGG | - | chr8.1:16688028-16688047 | MS.gene061721:intron | 45.0% | |
GCTGCAAGAGAACTGAATGT+GGG | - | chr8.1:16687993-16688012 | MS.gene061721:intron | 45.0% | |
GTTGTGGAGGTAAAGCTAGA+AGG | - | chr8.1:16687888-16687907 | MS.gene061721:CDS | 45.0% | |
TAAAGCTAGAAGGAGTGGAG+AGG | - | chr8.1:16687898-16687917 | MS.gene061721:CDS | 45.0% | |
TGATGATAACCTTCCAGCCT+TGG | + | chr8.1:16687597-16687616 | None:intergenic | 45.0% | |
! | GCAGGCTCATGAGTTTTCTA+TGG | + | chr8.1:16688070-16688089 | None:intergenic | 45.0% |
! | GTATAGAGGGTGATGATGAG+GGG | + | chr8.1:16687562-16687581 | None:intergenic | 45.0% |
!! | ATATAAACTTATAAATAATT+GGG | + | chr8.1:16687640-16687659 | None:intergenic | 5.0% |
!! | TATATAAACTTATAAATAAT+TGG | + | chr8.1:16687641-16687660 | None:intergenic | 5.0% |
!!! | GTTATTATTATTATTATTTT+TGG | + | chr8.1:16688167-16688186 | None:intergenic | 5.0% |
AGAGGAAATGAAGCTGGTGG+AGG | - | chr8.1:16688298-16688317 | MS.gene061721:intron | 50.0% | |
CATTGAACCAATGCCAAGGC+TGG | - | chr8.1:16687581-16687600 | MS.gene061721:intron | 50.0% | |
GGAAGAGGAAATGAAGCTGG+TGG | - | chr8.1:16688295-16688314 | MS.gene061721:intron | 50.0% | |
GGAGGTAAAGCTAGAAGGAG+TGG | - | chr8.1:16687893-16687912 | MS.gene061721:CDS | 50.0% | |
GTAGGGAGTTGGGTATTCGT+AGG | - | chr8.1:16688039-16688058 | MS.gene061721:intron | 50.0% | |
TAACCTTCCAGCCTTGGCAT+TGG | + | chr8.1:16687591-16687610 | None:intergenic | 50.0% | |
! | GGAGTGGAGAGGATTAGTGA+TGG | - | chr8.1:16687909-16687928 | MS.gene061721:CDS | 50.0% |
! | GGATTTGGTTGCAGGAGCTA+GGG | - | chr8.1:16688222-16688241 | MS.gene061721:intron | 50.0% |
! | TGGATTTGGTTGCAGGAGCT+AGG | - | chr8.1:16688221-16688240 | MS.gene061721:intron | 50.0% |
CAGGAGCTAGGGAAAGAGGA+TGG | - | chr8.1:16688233-16688252 | MS.gene061721:intron | 55.0% | |
GAACCAATGCCAAGGCTGGA+AGG | - | chr8.1:16687585-16687604 | MS.gene061721:intron | 55.0% | |
GGGAGTTGGGTATTCGTAGG+TGG | - | chr8.1:16688042-16688061 | MS.gene061721:intron | 55.0% | |
GTTGCAGGAGCTAGGGAAAG+AGG | - | chr8.1:16688229-16688248 | MS.gene061721:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 16687283 | 16688427 | 16687283 | ID=MS.gene061721 |
chr8.1 | mRNA | 16687283 | 16688427 | 16687283 | ID=MS.gene061721.t1;Parent=MS.gene061721 |
chr8.1 | exon | 16688342 | 16688427 | 16688342 | ID=MS.gene061721.t1.exon1;Parent=MS.gene061721.t1 |
chr8.1 | CDS | 16688342 | 16688427 | 16688342 | ID=cds.MS.gene061721.t1;Parent=MS.gene061721.t1 |
chr8.1 | exon | 16688104 | 16688228 | 16688104 | ID=MS.gene061721.t1.exon2;Parent=MS.gene061721.t1 |
chr8.1 | CDS | 16688104 | 16688228 | 16688104 | ID=cds.MS.gene061721.t1;Parent=MS.gene061721.t1 |
chr8.1 | exon | 16687598 | 16687935 | 16687598 | ID=MS.gene061721.t1.exon3;Parent=MS.gene061721.t1 |
chr8.1 | CDS | 16687598 | 16687935 | 16687598 | ID=cds.MS.gene061721.t1;Parent=MS.gene061721.t1 |
chr8.1 | exon | 16687283 | 16687474 | 16687283 | ID=MS.gene061721.t1.exon4;Parent=MS.gene061721.t1 |
chr8.1 | CDS | 16687283 | 16687474 | 16687283 | ID=cds.MS.gene061721.t1;Parent=MS.gene061721.t1 |
Gene Sequence |
Protein sequence |