AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061728

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061728.t1 MTR_4g108720 97.191 356 10 0 1 356 1 356 0.0 716
MS.gene061728.t1 MTR_5g041650 49.587 363 163 8 1 354 38 389 4.31e-110 327
MS.gene061728.t1 MTR_3g102570 32.735 223 124 7 1 217 1 203 9.28e-29 114
MS.gene061728.t1 MTR_4g084740 33.188 229 126 7 1 214 1 217 2.36e-26 107
MS.gene061728.t1 MTR_5g066180 34.302 172 79 5 1 169 1 141 7.01e-18 82.0
MS.gene061728.t1 MTR_1g029670 39.423 104 63 0 1 104 1 104 5.99e-17 78.2
MS.gene061728.t1 MTR_3g088615 62.264 53 20 0 1 53 1 53 3.30e-16 76.3
MS.gene061728.t1 MTR_1g053070 48.611 72 35 1 1 72 1 70 6.56e-16 77.0
MS.gene061728.t1 MTR_5g032520 48.571 70 34 1 1 70 1 68 7.51e-15 73.6
MS.gene061728.t1 MTR_7g075870 31.319 182 95 5 1 180 1 154 7.80e-15 73.2
MS.gene061728.t1 MTR_5g032150 48.571 70 34 1 1 70 1 68 8.25e-15 73.2
MS.gene061728.t1 MTR_0003s0590 46.479 71 36 1 1 71 1 69 8.77e-15 73.9
MS.gene061728.t1 MTR_3g113030 56.604 53 23 0 1 53 1 53 1.11e-14 73.2
MS.gene061728.t1 MTR_5g046790 45.570 79 42 1 1 79 1 78 1.13e-14 72.8
MS.gene061728.t1 MTR_2g017865 45.070 71 37 1 1 71 16 84 1.20e-14 73.6
MS.gene061728.t1 MTR_5g066960 50.943 53 26 0 1 53 1 53 1.93e-14 67.8
MS.gene061728.t1 MTR_2g009890 46.479 71 36 1 1 71 1 69 1.96e-14 73.2
MS.gene061728.t1 MTR_8g066260 43.038 79 44 1 1 79 1 78 2.03e-14 72.4
MS.gene061728.t1 MTR_1g038300 45.070 71 39 0 1 71 1 71 2.27e-14 72.0
MS.gene061728.t1 MTR_3g452380 54.717 53 24 0 1 53 16 68 2.85e-14 72.0
MS.gene061728.t1 MTR_2g461710 54.717 53 24 0 1 53 1 53 3.32e-14 67.0
MS.gene061728.t1 MTR_4g109830 43.038 79 44 1 1 79 1 78 3.37e-14 71.6
MS.gene061728.t1 MTR_3g005530 54.717 53 24 0 1 53 1 53 3.55e-14 71.2
MS.gene061728.t1 MTR_4g093970 48.571 70 34 1 1 70 27 94 5.29e-14 71.2
MS.gene061728.t1 MTR_5g031000 43.662 71 38 1 1 71 1 69 8.40e-14 70.5
MS.gene061728.t1 MTR_8g087860 52.830 53 25 0 1 53 17 69 8.75e-14 70.9
MS.gene061728.t1 MTR_1g101970 46.575 73 37 1 1 73 1 71 8.91e-14 69.7
MS.gene061728.t1 MTR_5g031000 43.662 71 38 1 1 71 1 69 1.03e-13 70.5
MS.gene061728.t1 MTR_7g075870 30.220 182 98 5 1 180 1 155 1.04e-13 69.7
MS.gene061728.t1 MTR_7g075850 41.333 75 44 0 1 75 1 75 1.65e-13 70.1
MS.gene061728.t1 MTR_1g108510 29.762 168 104 6 2 167 9 164 2.11e-13 69.3
MS.gene061728.t1 MTR_5g021270 38.710 124 71 4 1 120 1 123 2.45e-13 69.3
MS.gene061728.t1 MTR_8g097090 32.057 209 106 10 1 188 1 194 2.68e-13 69.3
MS.gene061728.t1 MTR_5g021270 38.710 124 71 4 1 120 1 123 2.90e-13 68.9
MS.gene061728.t1 MTR_1g054265 38.961 77 45 1 1 77 1 75 3.22e-13 67.4
MS.gene061728.t1 MTR_3g030770 29.762 168 104 6 2 167 9 164 4.30e-13 68.6
MS.gene061728.t1 MTR_4g102530 56.604 53 23 0 1 53 1 53 5.64e-13 67.8
MS.gene061728.t1 MTR_7g016600 31.343 201 109 8 1 184 1 189 6.14e-13 68.2
MS.gene061728.t1 MTR_8g033270 52.830 53 25 0 1 53 1 53 6.54e-13 68.2
MS.gene061728.t1 MTR_4g109810 50.943 53 26 0 1 53 1 53 8.60e-13 67.8
MS.gene061728.t1 MTR_4g093030 54.717 53 24 0 1 53 1 53 8.81e-13 65.9
MS.gene061728.t1 MTR_8g043650 28.977 176 103 7 2 167 9 172 9.82e-13 67.4
MS.gene061728.t1 MTR_5g046870 52.830 53 25 0 1 53 1 53 9.84e-13 64.7
MS.gene061728.t1 MTR_8g086290 51.923 52 25 0 2 53 12 63 1.30e-12 65.9
MS.gene061728.t1 MTR_1g041615 37.363 91 51 2 16 104 20 106 1.67e-12 64.7
MS.gene061728.t1 MTR_8g051580 30.247 162 80 5 1 156 1 135 2.32e-12 65.5
MS.gene061728.t1 MTR_8g033220 50.943 53 26 0 1 53 1 53 2.43e-12 66.2
MS.gene061728.t1 MTR_6g015975 50.943 53 26 0 1 53 1 53 2.51e-12 66.6
MS.gene061728.t1 MTR_8g033220 50.943 53 26 0 1 53 1 53 2.57e-12 66.2
MS.gene061728.t1 MTR_7g016630 28.977 176 113 4 1 169 1 171 2.70e-12 66.6
MS.gene061728.t1 MTR_3g084980 50.943 53 26 0 1 53 1 53 3.07e-12 66.2
MS.gene061728.t1 MTR_4g094638 53.704 54 25 0 1 54 1 54 3.32e-12 64.7
MS.gene061728.t1 MTR_4g036050 41.333 75 43 1 1 75 1 74 3.33e-12 64.7
MS.gene061728.t1 MTR_1g108580 28.571 168 106 6 2 167 9 164 4.06e-12 65.5
MS.gene061728.t1 MTR_4g036050 41.333 75 43 1 1 75 1 74 4.19e-12 64.7
MS.gene061728.t1 MTR_4g036050 41.333 75 43 1 1 75 1 74 4.52e-12 64.7
MS.gene061728.t1 MTR_2g105290 50.943 53 26 0 1 53 11 63 4.81e-12 64.3
MS.gene061728.t1 MTR_4g036050 41.333 75 43 1 1 75 1 74 5.26e-12 64.7
MS.gene061728.t1 MTR_3g052870 33.884 121 73 5 2 119 9 125 6.55e-12 64.7
MS.gene061728.t1 MTR_6g464720 43.243 74 39 2 1 73 1 72 7.04e-12 65.1
MS.gene061728.t1 MTR_1g105920 33.884 121 73 5 2 119 9 125 1.20e-11 64.3
MS.gene061728.t1 MTR_4g131030 40.260 77 44 1 1 77 1 75 1.34e-11 63.9
MS.gene061728.t1 MTR_3g052920 39.326 89 49 3 2 89 9 93 1.73e-11 63.9
MS.gene061728.t1 MTR_1g063160 37.662 77 46 1 1 77 1 75 2.60e-11 62.4
MS.gene061728.t1 MTR_0121s0100 41.333 75 42 1 2 76 9 81 2.93e-11 60.8
MS.gene061728.t1 MTR_8g079502 46.296 54 29 0 1 54 1 54 3.30e-11 62.0
MS.gene061728.t1 MTR_5g045560 39.744 78 45 1 1 78 8 83 3.39e-11 63.2
MS.gene061728.t1 MTR_8g046350 30.075 133 66 3 1 133 1 106 3.48e-11 61.6
MS.gene061728.t1 MTR_1g105910 38.202 89 50 3 2 89 9 93 3.55e-11 63.2
MS.gene061728.t1 MTR_2g085250 38.043 92 54 2 2 93 9 97 3.62e-11 62.8
MS.gene061728.t1 MTR_2g085280 38.043 92 54 2 2 93 9 97 3.79e-11 62.8
MS.gene061728.t1 MTR_2g030740 38.202 89 50 3 2 89 9 93 5.59e-11 62.4
MS.gene061728.t1 MTR_1g075600 28.934 197 115 8 2 195 9 183 5.59e-11 62.4
MS.gene061728.t1 MTR_4g094632 48.148 54 28 0 1 54 1 54 7.04e-11 60.5
MS.gene061728.t1 MTR_1g047550 46.296 54 29 0 1 54 1 54 7.15e-11 60.8
MS.gene061728.t1 MTR_1g077360 42.857 77 41 2 2 77 9 83 7.77e-11 62.0
MS.gene061728.t1 MTR_2g093190 40.000 75 43 1 2 76 9 81 8.32e-11 61.6
MS.gene061728.t1 MTR_5g055100 42.857 77 41 2 2 77 9 83 9.66e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061728.t1 AT1G18750 52.824 301 123 6 1 296 1 287 1.27e-97 295
MS.gene061728.t1 AT1G18750 52.824 301 123 6 1 296 1 287 1.83e-97 295
MS.gene061728.t1 AT1G18750 47.605 334 123 7 1 296 1 320 1.16e-90 278
MS.gene061728.t1 AT2G03060 51.930 285 113 5 1 276 1 270 2.97e-89 273
MS.gene061728.t1 AT2G03060 51.930 285 113 5 1 276 1 270 2.97e-89 273
MS.gene061728.t1 AT2G03060 51.930 285 113 5 1 276 1 270 2.97e-89 273
MS.gene061728.t1 AT2G03060 51.930 285 113 5 1 276 1 270 3.06e-89 273
MS.gene061728.t1 AT1G69540 38.947 380 186 13 1 355 1 359 1.21e-70 225
MS.gene061728.t1 AT1G69540 43.322 307 144 8 1 292 1 292 1.63e-70 224
MS.gene061728.t1 AT1G18750 46.275 255 118 6 47 296 1 241 2.48e-66 213
MS.gene061728.t1 AT2G03060 43.627 204 91 5 82 276 24 212 1.65e-42 150
MS.gene061728.t1 AT2G03060 43.627 204 91 5 82 276 24 212 1.65e-42 150
MS.gene061728.t1 AT2G03060 43.627 204 91 5 82 276 24 212 1.65e-42 150
MS.gene061728.t1 AT1G18750 36.923 195 104 6 107 296 5 185 3.18e-29 114
MS.gene061728.t1 AT1G77980 36.735 196 108 6 1 181 1 195 1.82e-28 113
MS.gene061728.t1 AT1G18750 36.508 189 101 6 113 296 23 197 4.61e-27 108
MS.gene061728.t1 AT1G22130 33.500 200 118 5 1 186 1 199 1.04e-25 105
MS.gene061728.t1 AT1G77950 34.031 191 101 6 1 171 1 186 4.46e-24 99.8
MS.gene061728.t1 AT1G77950 34.031 191 101 6 1 171 1 186 4.46e-24 99.8
MS.gene061728.t1 AT1G77950 34.031 191 101 6 1 171 1 186 4.46e-24 99.8
MS.gene061728.t1 AT1G77950 34.031 191 101 6 1 171 1 186 4.46e-24 99.8
MS.gene061728.t1 AT1G69540 33.333 174 106 4 96 260 2 174 1.90e-21 92.4
MS.gene061728.t1 AT2G26320 47.561 82 43 0 1 82 17 98 4.27e-19 82.0
MS.gene061728.t1 AT2G03710 36.145 166 71 6 1 159 1 138 1.21e-16 79.3
MS.gene061728.t1 AT2G03710 36.145 166 71 6 1 159 1 138 1.25e-16 79.3
MS.gene061728.t1 AT4G24540 32.787 183 91 6 1 180 1 154 4.39e-16 77.0
MS.gene061728.t1 AT2G03710 36.145 166 71 6 1 159 1 138 4.55e-16 75.9
MS.gene061728.t1 AT5G13790 38.384 99 57 2 1 97 1 97 6.70e-16 77.4
MS.gene061728.t1 AT5G23260 47.887 71 37 0 1 71 1 71 1.86e-15 75.5
MS.gene061728.t1 AT5G23260 47.887 71 37 0 1 71 1 71 2.13e-15 75.5
MS.gene061728.t1 AT5G23260 47.887 71 37 0 1 71 17 87 2.68e-15 75.5
MS.gene061728.t1 AT5G23260 47.887 71 37 0 1 71 17 87 2.90e-15 75.5
MS.gene061728.t1 AT3G57390 42.353 85 47 1 1 85 1 83 3.28e-15 74.7
MS.gene061728.t1 AT3G57390 42.353 85 47 1 1 85 1 83 4.09e-15 74.7
MS.gene061728.t1 AT5G13790 43.056 72 39 1 1 72 1 70 5.51e-15 74.7
MS.gene061728.t1 AT3G57230 44.444 72 38 1 1 72 1 70 7.29e-15 71.6
MS.gene061728.t1 AT4G37435 26.531 196 108 6 1 178 1 178 9.77e-15 72.4
MS.gene061728.t1 AT2G22540 32.927 164 84 6 1 164 1 138 1.75e-14 72.8
MS.gene061728.t1 AT2G22540 32.927 164 84 6 1 164 1 138 1.75e-14 72.8
MS.gene061728.t1 AT1G26310 43.038 79 44 1 1 79 1 78 2.13e-14 72.8
MS.gene061728.t1 AT2G14210 43.590 78 43 1 1 78 1 77 2.18e-14 72.4
MS.gene061728.t1 AT2G14210 43.590 78 43 1 1 78 1 77 2.33e-14 72.4
MS.gene061728.t1 AT3G57230 44.444 72 38 1 1 72 1 70 2.44e-14 72.4
MS.gene061728.t1 AT3G57230 44.444 72 38 1 1 72 1 70 2.44e-14 72.4
MS.gene061728.t1 AT2G45650 30.000 190 114 6 1 180 1 181 2.73e-14 72.4
MS.gene061728.t1 AT4G37940 45.070 71 37 1 1 71 1 69 3.09e-14 70.5
MS.gene061728.t1 AT4G37940 45.070 71 37 1 1 71 1 69 3.85e-14 71.2
MS.gene061728.t1 AT4G37940 45.070 71 37 1 1 71 1 69 4.14e-14 71.2
MS.gene061728.t1 AT5G51870 45.333 75 39 1 1 75 1 73 4.22e-14 70.1
MS.gene061728.t1 AT1G69120 43.038 79 44 1 1 79 1 78 5.56e-14 71.2
MS.gene061728.t1 AT4G09960 43.662 71 38 1 1 71 1 69 5.75e-14 70.9
MS.gene061728.t1 AT2G45660 46.479 71 36 1 1 71 1 69 6.35e-14 69.3
MS.gene061728.t1 AT2G22540 52.830 53 25 0 1 53 1 53 7.32e-14 70.9
MS.gene061728.t1 AT1G69120 43.038 79 44 1 1 79 1 78 7.35e-14 71.2
MS.gene061728.t1 AT4G09960 43.662 71 38 1 1 71 1 69 8.15e-14 70.5
MS.gene061728.t1 AT5G51870 45.333 75 39 1 1 75 1 73 8.75e-14 70.1
MS.gene061728.t1 AT4G09960 43.662 71 38 1 1 71 2 70 8.77e-14 70.5
MS.gene061728.t1 AT4G09960 43.662 71 38 1 1 71 11 79 1.02e-13 70.5
MS.gene061728.t1 AT2G45660 46.479 71 36 1 1 71 1 69 1.04e-13 70.1
MS.gene061728.t1 AT1G71692 42.500 80 45 1 1 80 1 79 1.09e-13 69.7
MS.gene061728.t1 AT5G51870 45.333 75 39 1 1 75 24 96 1.18e-13 69.3
MS.gene061728.t1 AT3G58780 52.830 53 25 0 1 53 16 68 1.21e-13 70.5
MS.gene061728.t1 AT3G58780 52.830 53 25 0 1 53 16 68 1.21e-13 70.5
MS.gene061728.t1 AT2G42830 52.830 53 25 0 1 53 16 68 1.33e-13 70.1
MS.gene061728.t1 AT2G42830 52.830 53 25 0 1 53 16 68 1.43e-13 70.1
MS.gene061728.t1 AT5G51870 45.333 75 39 1 1 75 1 73 1.44e-13 69.7
MS.gene061728.t1 AT3G58780 52.830 53 25 0 1 53 22 74 1.47e-13 70.1
MS.gene061728.t1 AT4G09960 43.662 71 38 1 1 71 27 95 1.69e-13 70.1
MS.gene061728.t1 AT5G51870 45.333 75 39 1 1 75 11 83 1.77e-13 69.7
MS.gene061728.t1 AT3G58780 52.830 53 25 0 1 53 16 68 2.03e-13 70.1
MS.gene061728.t1 AT4G18960 53.846 52 24 0 2 53 18 69 2.21e-13 69.7
MS.gene061728.t1 AT5G20240 36.782 87 55 0 1 87 1 87 2.35e-13 67.4
MS.gene061728.t1 AT2G22630 43.750 80 41 2 1 78 1 78 2.62e-13 68.9
MS.gene061728.t1 AT2G22630 43.750 80 41 2 1 78 1 78 2.62e-13 68.9
MS.gene061728.t1 AT3G58780 52.830 53 25 0 1 53 16 68 2.99e-13 69.7
MS.gene061728.t1 AT5G20240 50.943 53 26 0 1 53 1 53 4.22e-13 68.2
MS.gene061728.t1 AT3G61120 56.604 53 23 0 1 53 1 53 4.23e-13 68.9
MS.gene061728.t1 AT5G62165 40.789 76 43 1 1 76 1 74 4.39e-13 65.5
MS.gene061728.t1 AT5G60910 45.070 71 38 1 1 71 1 70 4.53e-13 68.6
MS.gene061728.t1 AT4G11880 28.638 213 114 8 1 213 1 175 4.95e-13 67.4
MS.gene061728.t1 AT4G11880 28.638 213 114 8 1 213 1 175 4.95e-13 67.4
MS.gene061728.t1 AT4G09960 52.830 53 25 0 1 53 96 148 5.12e-13 69.7
MS.gene061728.t1 AT5G10140 52.830 53 25 0 1 53 1 53 5.33e-13 67.0
MS.gene061728.t1 AT3G54340 31.731 104 71 0 1 104 1 104 5.56e-13 68.2
MS.gene061728.t1 AT5G10140 52.830 53 25 0 1 53 1 53 6.02e-13 67.4
MS.gene061728.t1 AT3G30260 40.845 71 41 1 1 71 1 70 6.13e-13 68.6
MS.gene061728.t1 AT5G10140 52.830 53 25 0 1 53 1 53 6.28e-13 67.0
MS.gene061728.t1 AT5G10140 52.830 53 25 0 1 53 1 53 6.30e-13 67.0
MS.gene061728.t1 AT4G22950 27.072 181 105 3 1 181 1 154 1.18e-12 67.0
MS.gene061728.t1 AT4G22950 27.072 181 105 3 1 181 1 154 1.18e-12 67.0
MS.gene061728.t1 AT5G62165 29.282 181 102 4 1 181 1 155 1.40e-12 65.5
MS.gene061728.t1 AT5G62165 29.282 181 102 4 1 181 1 155 1.40e-12 65.5
MS.gene061728.t1 AT5G62165 29.282 181 102 4 1 181 1 155 1.40e-12 65.5
MS.gene061728.t1 AT5G62165 29.282 181 102 4 1 181 1 155 1.50e-12 66.6
MS.gene061728.t1 AT5G62165 29.282 181 102 4 1 181 1 155 1.50e-12 66.6
MS.gene061728.t1 AT5G62165 29.282 181 102 4 1 181 1 155 1.50e-12 66.6
MS.gene061728.t1 AT4G11880 52.830 53 25 0 1 53 1 53 2.46e-12 66.2
MS.gene061728.t1 AT4G11880 52.830 53 25 0 1 53 1 53 2.46e-12 66.2
MS.gene061728.t1 AT1G24260 50.943 53 26 0 1 53 1 53 2.49e-12 66.2
MS.gene061728.t1 AT1G24260 50.943 53 26 0 1 53 1 53 3.00e-12 66.2
MS.gene061728.t1 AT1G24260 50.943 53 26 0 1 53 1 53 3.04e-12 66.2
MS.gene061728.t1 AT5G62165 40.789 76 43 1 1 76 1 74 3.06e-12 64.3
MS.gene061728.t1 AT5G62165 40.789 76 43 1 1 76 1 74 3.06e-12 64.3
MS.gene061728.t1 AT5G62165 40.789 76 43 1 1 76 1 74 3.06e-12 64.3
MS.gene061728.t1 AT5G62165 40.789 76 43 1 1 76 1 74 3.06e-12 64.3
MS.gene061728.t1 AT5G62165 40.789 76 43 1 1 76 1 74 3.06e-12 64.3
MS.gene061728.t1 AT5G15800 50.943 53 26 0 1 53 1 53 3.57e-12 66.2
MS.gene061728.t1 AT5G62165 40.789 76 43 1 1 76 1 74 4.23e-12 65.1
MS.gene061728.t1 AT5G62165 40.789 76 43 1 1 76 1 74 4.23e-12 65.1
MS.gene061728.t1 AT5G15800 50.943 53 26 0 1 53 1 53 4.37e-12 66.2
MS.gene061728.t1 AT3G02310 50.943 53 26 0 1 53 1 53 5.08e-12 64.7
MS.gene061728.t1 AT4G22950 27.072 181 105 3 1 181 1 154 5.14e-12 64.3
MS.gene061728.t1 AT5G51860 28.723 188 98 6 1 168 1 172 6.41e-12 64.7
MS.gene061728.t1 AT5G51860 42.466 73 40 1 1 73 1 71 6.61e-12 64.7
MS.gene061728.t1 AT3G02310 50.943 53 26 0 1 53 1 53 7.30e-12 65.1
MS.gene061728.t1 AT5G65050 34.211 152 84 5 1 147 1 141 7.64e-12 63.9
MS.gene061728.t1 AT5G65050 43.662 71 39 1 1 71 1 70 8.99e-12 63.5
MS.gene061728.t1 AT2G34440 46.296 54 29 0 1 54 1 54 1.58e-11 62.8
MS.gene061728.t1 AT5G65050 43.662 71 39 1 1 71 1 70 1.81e-11 63.2
MS.gene061728.t1 AT5G65050 43.662 71 39 1 1 71 1 70 1.94e-11 62.8
MS.gene061728.t1 AT5G65070 47.170 53 28 0 1 53 1 53 2.48e-11 61.6
MS.gene061728.t1 AT3G66656 46.296 54 29 0 1 54 1 54 4.01e-11 61.6
MS.gene061728.t1 AT1G01530 49.057 53 27 0 1 53 6 58 4.23e-11 63.2
MS.gene061728.t1 AT5G65070 47.170 53 28 0 1 53 1 53 4.48e-11 62.0
MS.gene061728.t1 AT4G36590 43.662 71 38 1 2 72 7 75 5.31e-11 62.8
MS.gene061728.t1 AT5G65070 47.170 53 28 0 1 53 1 53 7.56e-11 61.6
MS.gene061728.t1 AT5G65070 47.170 53 28 0 1 53 1 53 7.95e-11 62.0
MS.gene061728.t1 AT5G65070 47.170 53 28 0 1 53 1 53 8.63e-11 62.0

Find 83 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCACATGTCACTATTT+TGG 0.102186 8.1:-16640994 MS.gene061728:CDS
TAAATTGAAGATAAAGAAAT+TGG 0.209657 8.1:-16643430 MS.gene061728:CDS
GTTCTAATTGAGCAGGAAAA+TGG 0.237423 8.1:-16642761 MS.gene061728:intron
CCAAGCTATTCTGGTTATAC+TGG 0.263985 8.1:-16641041 MS.gene061728:CDS
TGCACATTTAAGTAAGGATT+TGG 0.267580 8.1:+16640933 None:intergenic
TTGAAAATGGACACCAGTTT+TGG 0.274501 8.1:-16640779 MS.gene061728:CDS
CCAAAATCACTATTTGAAAA+TGG 0.281681 8.1:-16640792 MS.gene061728:CDS
AACCAAAGTTTATGTCATTC+AGG 0.285801 8.1:-16641333 MS.gene061728:intron
CCCTTTCTTGTGGGCTAAGT+TGG 0.290811 8.1:+16642860 None:intergenic
TTGTAGACCAGACATCATTA+AGG 0.306825 8.1:+16641417 None:intergenic
ATTTCACTCCCAAGCTATTC+TGG 0.316741 8.1:-16641050 MS.gene061728:CDS
GGTACCTTGAATGAGTTAAA+TGG 0.322272 8.1:-16640960 MS.gene061728:CDS
GCCCACAAGAAAGGGCTAAA+AGG 0.346530 8.1:-16642852 MS.gene061728:intron
CGCATTCAAGTGACATTAGT+TGG 0.358372 8.1:+16641554 None:intergenic
TGTAAAGATACAAGATTTCC+TGG 0.370430 8.1:-16642574 MS.gene061728:CDS
CCTTTCTTGTGGGCTAAGTT+GGG 0.379085 8.1:+16642861 None:intergenic
AGGAAAGCCTACGTTATTAC+AGG 0.394098 8.1:-16643289 MS.gene061728:CDS
CACTGTTGCACATTTAAGTA+AGG 0.404816 8.1:+16640927 None:intergenic
AAGGGCAAAGTCATCCCTTC+TGG 0.405073 8.1:+16641436 None:intergenic
TCTGTTGTATTTCTGTGAGC+CGG 0.408375 8.1:+16642307 None:intergenic
TCTCAGTTATTGGAGTAATC+TGG 0.414099 8.1:-16641802 MS.gene061728:intron
ACTTTGCCCTTAATGATGTC+TGG 0.425266 8.1:-16641424 MS.gene061728:CDS
ATCATGATCCAATTTCTTGA+AGG 0.431577 8.1:+16642596 None:intergenic
CCCAACTTAGCCCACAAGAA+AGG 0.433847 8.1:-16642861 MS.gene061728:CDS
CTTGGAACATCTTAGACAAA+TGG 0.437086 8.1:-16641766 MS.gene061728:CDS
GTTCACTAGGTAACATCAAC+TGG 0.439721 8.1:+16641353 None:intergenic
TGTAGACCAGACATCATTAA+GGG 0.442310 8.1:+16641418 None:intergenic
TTGATTTGCTATTGATTGGT+TGG 0.442413 8.1:+16640853 None:intergenic
CATTTGTAGAATTCCAAAAC+TGG 0.442837 8.1:+16640766 None:intergenic
CACCTGAATGACATAAACTT+TGG 0.443645 8.1:+16641331 None:intergenic
CAATCGATTGTCTATACAAA+AGG 0.445203 8.1:-16641721 MS.gene061728:intron
TTATTTGATTTGCTATTGAT+TGG 0.458324 8.1:+16640849 None:intergenic
TTCACTTCCTCAAGATCTTG+TGG 0.459942 8.1:+16640882 None:intergenic
GATCATAATTGTTATTAACT+TGG 0.470376 8.1:+16640817 None:intergenic
AAGAATCTCAACCTTTGTCT+TGG 0.471192 8.1:-16641396 MS.gene061728:CDS
TACAAGATTTCCTGGGTTCA+AGG 0.476006 8.1:-16642566 MS.gene061728:intron
ATTTCCATTTAACTCATTCA+AGG 0.477610 8.1:+16640956 None:intergenic
TTATACTGGGAACTGCAAAC+TGG 0.478109 8.1:-16641027 MS.gene061728:CDS
TGGGAACTGCAAACTGGAGG+TGG 0.480619 8.1:-16641021 MS.gene061728:CDS
AGATTCTCACTTGATGACTT+AGG 0.481817 8.1:+16642337 None:intergenic
CAGTATAACCAGAATAGCTT+GGG 0.488834 8.1:+16641042 None:intergenic
CTGTTGTATTTCTGTGAGCC+GGG 0.490376 8.1:+16642308 None:intergenic
TCCTCAAGATCTTGTGGAGG+AGG 0.493605 8.1:+16640888 None:intergenic
CCAACTTAGCCCACAAGAAA+GGG 0.507371 8.1:-16642860 MS.gene061728:CDS
CCAGTATAACCAGAATAGCT+TGG 0.510057 8.1:+16641041 None:intergenic
GTCACTTGAATGCGTTAACC+AGG 0.524046 8.1:-16641545 MS.gene061728:intron
TCTGGAGAAGATCAGTAACT+TGG 0.527978 8.1:-16641784 MS.gene061728:CDS
ACTTATTCGAAGCGGAAAAG+TGG 0.527998 8.1:-16643384 MS.gene061728:CDS
AAAACTACATGCTTACCCTA+TGG 0.529353 8.1:+16640706 None:intergenic
ATTGCTATGTATAACGAGAA+TGG 0.533675 8.1:-16640732 MS.gene061728:CDS
CAAGCTATTCTGGTTATACT+GGG 0.535943 8.1:-16641040 MS.gene061728:CDS
GACAAATGGAAGACTCACTC+AGG 0.540615 8.1:-16641752 MS.gene061728:CDS
CCTTTGTCTTGGCTTCTAAG+TGG 0.542337 8.1:-16641385 MS.gene061728:CDS
AAGTGAGAATCTTACAAGCC+CGG 0.548210 8.1:-16642326 MS.gene061728:CDS
CCCTCCTCCACAAGATCTTG+AGG 0.562025 8.1:-16640889 MS.gene061728:CDS
AATTCTACAAATGGCTCTTG+TGG 0.562150 8.1:-16640756 MS.gene061728:CDS
ATAACGAGAATGGTTACCAT+AGG 0.564017 8.1:-16640722 MS.gene061728:CDS
ATTGATTCATAGTTACCAGA+AGG 0.565773 8.1:-16641451 MS.gene061728:intron
CTGTTGGAGAAAACATGAGA+AGG 0.576749 8.1:+16643310 None:intergenic
CTTATTCGAAGCGGAAAAGT+GGG 0.585417 8.1:-16643383 MS.gene061728:CDS
CAATCACTTACCTTGAACCC+AGG 0.589742 8.1:+16642556 None:intergenic
CGTTCTCCCTGTAATAACGT+AGG 0.597125 8.1:+16643282 None:intergenic
GTAAAGATACAAGATTTCCT+GGG 0.597719 8.1:-16642573 MS.gene061728:CDS
TAACGAGAATGGTTACCATA+GGG 0.597927 8.1:-16640721 MS.gene061728:CDS
CCTCAAGATCTTGTGGAGGA+GGG 0.600496 8.1:+16640889 None:intergenic
GACATAAACTTTGGTTCACT+AGG 0.613858 8.1:+16641340 None:intergenic
CAATAGCAAATCAAATAACG+TGG 0.614557 8.1:-16640844 MS.gene061728:CDS
ACTTCCTCAAGATCTTGTGG+AGG 0.620137 8.1:+16640885 None:intergenic
GGGAACTGCAAACTGGAGGT+GGG 0.623032 8.1:-16641020 MS.gene061728:CDS
AATAACGTAGGCTTTCCTGT+TGG 0.623309 8.1:+16643294 None:intergenic
TTGATTCATAGTTACCAGAA+GGG 0.636080 8.1:-16641450 MS.gene061728:intron
CAGAAATACAACAGAGACTG+AGG 0.637183 8.1:-16642299 MS.gene061728:intron
ATAGCTTGGGAGTGAAATGT+CGG 0.637360 8.1:+16641055 None:intergenic
ATATTGCAGCAGTCAAACAG+TGG 0.648674 8.1:-16642467 MS.gene061728:intron
TACTGGGAACTGCAAACTGG+AGG 0.648889 8.1:-16641024 MS.gene061728:CDS
TGACCCAAAATAGTGACATG+TGG 0.657881 8.1:+16640990 None:intergenic
GCTTCGAATAAGTCACATGT+CGG 0.667125 8.1:+16643394 None:intergenic
ACAAATGGAAGACTCACTCA+GGG 0.670210 8.1:-16641751 MS.gene061728:CDS
GGAAAGCCTACGTTATTACA+GGG 0.679926 8.1:-16643288 MS.gene061728:CDS
GACATGTGACTTATTCGAAG+CGG 0.683369 8.1:-16643392 MS.gene061728:CDS
CCACTTAGAAGCCAAGACAA+AGG 0.694579 8.1:+16641385 None:intergenic
TTGCAGCAGTCAAACAGTGG+AGG 0.697141 8.1:-16642464 MS.gene061728:intron
CGTTATTACAGGGAGAACGA+AGG 0.718082 8.1:-16643278 MS.gene061728:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAGATAGAAAAAA+GGG + chr8.1:16642650-16642669 None:intergenic 10.0%
!! TATAATAATAGATAGAAAAA+AGG + chr8.1:16642651-16642670 None:intergenic 10.0%
!!! GTATATCTATTTTTTTTTTA+AGG + chr8.1:16641138-16641157 None:intergenic 10.0%
!!! GTTCAAATATTTTAAAAAAA+TGG - chr8.1:16641075-16641094 MS.gene061728:CDS 10.0%
!! TAAATTGAAGATAAAGAAAT+TGG - chr8.1:16640721-16640740 MS.gene061728:CDS 15.0%
!! TTATTCACAAATTATCAAAT+GGG - chr8.1:16641716-16641735 MS.gene061728:intron 15.0%
!! TTTATTCACAAATTATCAAA+TGG - chr8.1:16641715-16641734 MS.gene061728:intron 15.0%
!!! ATTTTTGAAATAATCTTATC+CGG - chr8.1:16642671-16642690 MS.gene061728:intron 15.0%
!!! TATTGATATTTTGATTTCAT+CGG - chr8.1:16642554-16642573 MS.gene061728:intron 15.0%
!! AAAATACACTATTATTTACC+TGG + chr8.1:16642627-16642646 None:intergenic 20.0%
!! AAAGTAATATATGAATTACG+AGG + chr8.1:16641445-16641464 None:intergenic 20.0%
!! AATCTTCAAAATCATTTACA+AGG + chr8.1:16641645-16641664 None:intergenic 20.0%
!! ATATGTAATATCTCAGTTAT+TGG - chr8.1:16642339-16642358 MS.gene061728:CDS 20.0%
!! CGAAAAATTTAAATTGAACA+AGG + chr8.1:16642046-16642065 None:intergenic 20.0%
!! GTCAAATACTATCATAATTT+GGG - chr8.1:16642291-16642310 MS.gene061728:intron 20.0%
!! TCTATACAAAAGGTAATATT+TGG - chr8.1:16642440-16642459 MS.gene061728:intron 20.0%
!! TGATAGTATTTGACATAATT+TGG + chr8.1:16642285-16642304 None:intergenic 20.0%
!! TGCAATATGAAAATTAAAAC+AGG + chr8.1:16641672-16641691 None:intergenic 20.0%
!! TGTCAAATACTATCATAATT+TGG - chr8.1:16642290-16642309 MS.gene061728:intron 20.0%
!!! ACTTATCATTTTAATCTCAA+AGG - chr8.1:16641047-16641066 MS.gene061728:CDS 20.0%
!!! ATTTTATTTTTCCAGCAATA+TGG - chr8.1:16641246-16641265 MS.gene061728:intron 20.0%
!!! GATCATAATTGTTATTAACT+TGG + chr8.1:16643337-16643356 None:intergenic 20.0%
!!! TTATTTGATTTGCTATTGAT+TGG + chr8.1:16643305-16643324 None:intergenic 20.0%
!!! TTTGGTCTTGTTTAAAATTT+AGG - chr8.1:16641520-16641539 MS.gene061728:intron 20.0%
!!! TTTTTGAAATAATCTTATCC+GGG - chr8.1:16642672-16642691 MS.gene061728:intron 20.0%
! ATTTCCATTTAACTCATTCA+AGG + chr8.1:16643198-16643217 None:intergenic 25.0%
! CCAAAATCACTATTTGAAAA+TGG - chr8.1:16643359-16643378 MS.gene061728:CDS 25.0%
! CGAAGGTAATGTAATAATAA+CGG - chr8.1:16640890-16640909 MS.gene061728:CDS 25.0%
! CTTGTGATAAAATGAGAAAA+TGG - chr8.1:16640966-16640985 MS.gene061728:CDS 25.0%
! GAAAAAAACCTTCAAGAAAT+TGG - chr8.1:16641547-16641566 MS.gene061728:CDS 25.0%
! TACACACTCATAATTAATAC+AGG + chr8.1:16642011-16642030 None:intergenic 25.0%
! TCAGTCATTGCTTAAAAATT+TGG - chr8.1:16641502-16641521 MS.gene061728:intron 25.0%
!! AAAGAGCTTTATAACAAAAG+TGG - chr8.1:16642869-16642888 MS.gene061728:CDS 25.0%
!! AGTTTGTACCAAAAAAGTAT+AGG + chr8.1:16642244-16642263 None:intergenic 25.0%
!! CCATTTTCAAATAGTGATTT+TGG + chr8.1:16643362-16643381 None:intergenic 25.0%
!! TAATCACAACGATTTTCTAA+GGG + chr8.1:16642515-16642534 None:intergenic 25.0%
!! TTAATCACAACGATTTTCTA+AGG + chr8.1:16642516-16642535 None:intergenic 25.0%
!! TTTCTCATTTTATCACAAGA+AGG + chr8.1:16640965-16640984 None:intergenic 25.0%
!!! ACTTTTACACACTTTAAAGA+TGG + chr8.1:16641177-16641196 None:intergenic 25.0%
!!! ATCATTTTAATCTCAAAGGA+CGG - chr8.1:16641051-16641070 MS.gene061728:CDS 25.0%
!!! CGACAAACACATTTTTTTTT+GGG + chr8.1:16642218-16642237 None:intergenic 25.0%
!!! TCGACAAACACATTTTTTTT+TGG + chr8.1:16642219-16642238 None:intergenic 25.0%
!!! TTTTGAAATAATCTTATCCG+GGG - chr8.1:16642673-16642692 MS.gene061728:intron 25.0%
AACCAAAGTTTATGTCATTC+AGG - chr8.1:16642818-16642837 MS.gene061728:intron 30.0%
AAGCACATACAAAATTGGTA+AGG + chr8.1:16641973-16641992 None:intergenic 30.0%
AGAATCTTAAGCTGGTAATT+AGG - chr8.1:16641753-16641772 MS.gene061728:CDS 30.0%
ATACAAAATTGGTAAGGTAG+AGG + chr8.1:16641967-16641986 None:intergenic 30.0%
ATCATGATCCAATTTCTTGA+AGG + chr8.1:16641558-16641577 None:intergenic 30.0%
ATTGCTATGTATAACGAGAA+TGG - chr8.1:16643419-16643438 MS.gene061728:CDS 30.0%
CAATAGCAAATCAAATAACG+TGG - chr8.1:16643307-16643326 MS.gene061728:CDS 30.0%
CAATCGATTGTCTATACAAA+AGG - chr8.1:16642430-16642449 MS.gene061728:intron 30.0%
CAATTGAACTCATAACACTT+TGG + chr8.1:16641782-16641801 None:intergenic 30.0%
CATTTGTAGAATTCCAAAAC+TGG + chr8.1:16643388-16643407 None:intergenic 30.0%
GTAAAGATACAAGATTTCCT+GGG - chr8.1:16641578-16641597 MS.gene061728:intron 30.0%
TGCACATTTAAGTAAGGATT+TGG + chr8.1:16643221-16643240 None:intergenic 30.0%
TGTAAAGATACAAGATTTCC+TGG - chr8.1:16641577-16641596 MS.gene061728:intron 30.0%
TTAAAGTGTGTAAAAGTCGA+AGG - chr8.1:16641180-16641199 MS.gene061728:intron 30.0%
TTGATTCATAGTTACCAGAA+GGG - chr8.1:16642701-16642720 MS.gene061728:intron 30.0%
TTGCAAAGCACATACAAAAT+TGG + chr8.1:16641978-16641997 None:intergenic 30.0%
! AATCACAACGATTTTCTAAG+GGG + chr8.1:16642514-16642533 None:intergenic 30.0%
! AGGTAATATTTGGTTTCATG+CGG - chr8.1:16642450-16642469 MS.gene061728:intron 30.0%
! ATTGATTCATAGTTACCAGA+AGG - chr8.1:16642700-16642719 MS.gene061728:intron 30.0%
! TTTTCTTGTTCTAATTGAGC+AGG - chr8.1:16641383-16641402 MS.gene061728:CDS 30.0%
!! ATTGCTTTAGAATCTTAAGC+TGG - chr8.1:16641745-16641764 MS.gene061728:CDS 30.0%
!! TTATTTTTCCAGCAATATGG+AGG - chr8.1:16641249-16641268 MS.gene061728:intron 30.0%
!! TTGATTTGCTATTGATTGGT+TGG + chr8.1:16643301-16643320 None:intergenic 30.0%
!!! CAAACACATTTTTTTTTGGG+TGG + chr8.1:16642215-16642234 None:intergenic 30.0%
!!! CAGTTTTGGAATTCTACAAA+TGG - chr8.1:16643386-16643405 MS.gene061728:CDS 30.0%
!!! TGTCGAAACCTATACTTTTT+TGG - chr8.1:16642233-16642252 MS.gene061728:intron 30.0%
!!! TTTTTTGGGTGGTGTTTATT+TGG + chr8.1:16642204-16642223 None:intergenic 30.0%
AAGAATCTCAACCTTTGTCT+TGG - chr8.1:16642755-16642774 MS.gene061728:intron 35.0%
AATTCTACAAATGGCTCTTG+TGG - chr8.1:16643395-16643414 MS.gene061728:CDS 35.0%
ACTATGAATCAATATCACCC+CGG + chr8.1:16642693-16642712 None:intergenic 35.0%
ATAACGAGAATGGTTACCAT+AGG - chr8.1:16643429-16643448 MS.gene061728:CDS 35.0%
CACCTGAATGACATAAACTT+TGG + chr8.1:16642823-16642842 None:intergenic 35.0%
CACTGTTGCACATTTAAGTA+AGG + chr8.1:16643227-16643246 None:intergenic 35.0%
CAGTATAACCAGAATAGCTT+GGG + chr8.1:16643112-16643131 None:intergenic 35.0%
CTTGGAACATCTTAGACAAA+TGG - chr8.1:16642385-16642404 MS.gene061728:intron 35.0%
GGTACCTTGAATGAGTTAAA+TGG - chr8.1:16643191-16643210 MS.gene061728:intron 35.0%
GTTCTAATTGAGCAGGAAAA+TGG - chr8.1:16641390-16641409 MS.gene061728:CDS 35.0%
TAACGAGAATGGTTACCATA+GGG - chr8.1:16643430-16643449 MS.gene061728:CDS 35.0%
TCTCAGTTATTGGAGTAATC+TGG - chr8.1:16642349-16642368 MS.gene061728:intron 35.0%
TGTAGACCAGACATCATTAA+GGG + chr8.1:16642736-16642755 None:intergenic 35.0%
TTGTAGACCAGACATCATTA+AGG + chr8.1:16642737-16642756 None:intergenic 35.0%
! AGATTCTCACTTGATGACTT+AGG + chr8.1:16641817-16641836 None:intergenic 35.0%
! CAAGCTATTCTGGTTATACT+GGG - chr8.1:16643111-16643130 MS.gene061728:intron 35.0%
! GACATAAACTTTGGTTCACT+AGG + chr8.1:16642814-16642833 None:intergenic 35.0%
! TCTCCACATGTCACTATTTT+GGG - chr8.1:16643158-16643177 MS.gene061728:intron 35.0%
! TTGAAAATGGACACCAGTTT+TGG - chr8.1:16643372-16643391 MS.gene061728:CDS 35.0%
!! GTTTATTTGGTGTGAGCTAA+AGG + chr8.1:16642191-16642210 None:intergenic 35.0%
!!! GATATTTTGATTTCATCGGC+AGG - chr8.1:16642558-16642577 MS.gene061728:intron 35.0%
AAGTGAGAATCTTACAAGCC+CGG - chr8.1:16641825-16641844 MS.gene061728:intron 40.0%
AATAACGTAGGCTTTCCTGT+TGG + chr8.1:16640860-16640879 None:intergenic 40.0%
AATGATCTCCTCCATATTGC+TGG + chr8.1:16641260-16641279 None:intergenic 40.0%
ACAAATGGAAGACTCACTCA+GGG - chr8.1:16642400-16642419 MS.gene061728:intron 40.0%
ACTTATTCGAAGCGGAAAAG+TGG - chr8.1:16640767-16640786 MS.gene061728:CDS 40.0%
ACTTTGCCCTTAATGATGTC+TGG - chr8.1:16642727-16642746 MS.gene061728:intron 40.0%
AGGAAAGCCTACGTTATTAC+AGG - chr8.1:16640862-16640881 MS.gene061728:CDS 40.0%
ATAGCTTGGGAGTGAAATGT+CGG + chr8.1:16643099-16643118 None:intergenic 40.0%
ATATTGCAGCAGTCAAACAG+TGG - chr8.1:16641684-16641703 MS.gene061728:intron 40.0%
ATTTCACTCCCAAGCTATTC+TGG - chr8.1:16643101-16643120 MS.gene061728:intron 40.0%
CAGAAATACAACAGAGACTG+AGG - chr8.1:16641852-16641871 MS.gene061728:intron 40.0%
CCAGTATAACCAGAATAGCT+TGG + chr8.1:16643113-16643132 None:intergenic 40.0%
CGCATTCAAGTGACATTAGT+TGG + chr8.1:16642600-16642619 None:intergenic 40.0%
CTGTTGGAGAAAACATGAGA+AGG + chr8.1:16640844-16640863 None:intergenic 40.0%
CTTATTCGAAGCGGAAAAGT+GGG - chr8.1:16640768-16640787 MS.gene061728:CDS 40.0%
GACATGTGACTTATTCGAAG+CGG - chr8.1:16640759-16640778 MS.gene061728:CDS 40.0%
GCTTCGAATAAGTCACATGT+CGG + chr8.1:16640760-16640779 None:intergenic 40.0%
GGAAAGCCTACGTTATTACA+GGG - chr8.1:16640863-16640882 MS.gene061728:CDS 40.0%
GTTCACTAGGTAACATCAAC+TGG + chr8.1:16642801-16642820 None:intergenic 40.0%
TACAAGATTTCCTGGGTTCA+AGG - chr8.1:16641585-16641604 MS.gene061728:intron 40.0%
TCTGGAGAAGATCAGTAACT+TGG - chr8.1:16642367-16642386 MS.gene061728:intron 40.0%
TGACCCAAAATAGTGACATG+TGG + chr8.1:16643164-16643183 None:intergenic 40.0%
TTATACTGGGAACTGCAAAC+TGG - chr8.1:16643124-16643143 MS.gene061728:intron 40.0%
TTCACTTCCTCAAGATCTTG+TGG + chr8.1:16643272-16643291 None:intergenic 40.0%
! AACCTTTTAGCCCTTTCTTG+TGG + chr8.1:16641304-16641323 None:intergenic 40.0%
! ACCTTTTAGCCCTTTCTTGT+GGG + chr8.1:16641303-16641322 None:intergenic 40.0%
! CCAAGCTATTCTGGTTATAC+TGG - chr8.1:16643110-16643129 MS.gene061728:intron 40.0%
! CTCTCCACATGTCACTATTT+TGG - chr8.1:16643157-16643176 MS.gene061728:intron 40.0%
! CTTCTCATGTTTTCTCCAAC+AGG - chr8.1:16640842-16640861 MS.gene061728:CDS 40.0%
! TCTGTTGTATTTCTGTGAGC+CGG + chr8.1:16641847-16641866 None:intergenic 40.0%
! TGAGTTCAATTGCCATTTGC+AGG - chr8.1:16641790-16641809 MS.gene061728:CDS 40.0%
!! ACAACGATTTTCTAAGGGGA+CGG + chr8.1:16642510-16642529 None:intergenic 40.0%
!! ACATGTCACTATTTTGGGTC+AGG - chr8.1:16643163-16643182 MS.gene061728:intron 40.0%
!! CATGTCACTATTTTGGGTCA+GGG - chr8.1:16643164-16643183 MS.gene061728:intron 40.0%
ACTTCCTCAAGATCTTGTGG+AGG + chr8.1:16643269-16643288 None:intergenic 45.0%
CAATCACTTACCTTGAACCC+AGG + chr8.1:16641598-16641617 None:intergenic 45.0%
CCAACTTAGCCCACAAGAAA+GGG - chr8.1:16641291-16641310 MS.gene061728:intron 45.0%
CCACTTAGAAGCCAAGACAA+AGG + chr8.1:16642769-16642788 None:intergenic 45.0%
CCTTTGTCTTGGCTTCTAAG+TGG - chr8.1:16642766-16642785 MS.gene061728:intron 45.0%
CGTTATTACAGGGAGAACGA+AGG - chr8.1:16640873-16640892 MS.gene061728:CDS 45.0%
CGTTCTCCCTGTAATAACGT+AGG + chr8.1:16640872-16640891 None:intergenic 45.0%
GACAAATGGAAGACTCACTC+AGG - chr8.1:16642399-16642418 MS.gene061728:intron 45.0%
GATGACTTAGGTCCTGCAAA+TGG + chr8.1:16641805-16641824 None:intergenic 45.0%
GTCACTTGAATGCGTTAACC+AGG - chr8.1:16642606-16642625 MS.gene061728:CDS 45.0%
! CCTTTCTTGTGGGCTAAGTT+GGG + chr8.1:16641293-16641312 None:intergenic 45.0%
! CTGTTGTATTTCTGTGAGCC+GGG + chr8.1:16641846-16641865 None:intergenic 45.0%
! TTGGTGTGAGCTAAAGGCAT+GGG + chr8.1:16642185-16642204 None:intergenic 45.0%
! TTTGGTGTGAGCTAAAGGCA+TGG + chr8.1:16642186-16642205 None:intergenic 45.0%
!! CAACGATTTTCTAAGGGGAC+GGG + chr8.1:16642509-16642528 None:intergenic 45.0%
!!! AGGTGCAACTTTGGAGCTTT+TGG - chr8.1:16641872-16641891 MS.gene061728:intron 45.0%
!! AAATAAAAATAAATATTTAG+TGG + chr8.1:16641339-16641358 None:intergenic 5.0%
!! AATAAAAATAAATATTTAGT+GGG + chr8.1:16641338-16641357 None:intergenic 5.0%
AAGGGCAAAGTCATCCCTTC+TGG + chr8.1:16642718-16642737 None:intergenic 50.0%
CAGAGACTGAGGTGCAACTT+TGG - chr8.1:16641863-16641882 MS.gene061728:intron 50.0%
CCCAACTTAGCCCACAAGAA+AGG - chr8.1:16641290-16641309 MS.gene061728:intron 50.0%
CCTCAAGATCTTGTGGAGGA+GGG + chr8.1:16643265-16643284 None:intergenic 50.0%
GCCCACAAGAAAGGGCTAAA+AGG - chr8.1:16641299-16641318 MS.gene061728:intron 50.0%
TACTGGGAACTGCAAACTGG+AGG - chr8.1:16643127-16643146 MS.gene061728:intron 50.0%
TCCTCAAGATCTTGTGGAGG+AGG + chr8.1:16643266-16643285 None:intergenic 50.0%
TTGCAGCAGTCAAACAGTGG+AGG - chr8.1:16641687-16641706 MS.gene061728:intron 50.0%
! CCCTTTCTTGTGGGCTAAGT+TGG + chr8.1:16641294-16641313 None:intergenic 50.0%
! TGGTGTGAGCTAAAGGCATG+GGG + chr8.1:16642184-16642203 None:intergenic 50.0%
!! ACTATTTTGGGTCAGGGAGG+TGG - chr8.1:16643170-16643189 MS.gene061728:intron 50.0%
!! GTCACTATTTTGGGTCAGGG+AGG - chr8.1:16643167-16643186 MS.gene061728:intron 50.0%
CCCTCCTCCACAAGATCTTG+AGG - chr8.1:16643262-16643281 MS.gene061728:intron 55.0%
GGGAACTGCAAACTGGAGGT+GGG - chr8.1:16643131-16643150 MS.gene061728:intron 55.0%
TGGGAACTGCAAACTGGAGG+TGG - chr8.1:16643130-16643149 MS.gene061728:intron 55.0%
! TTCTAAGGGGACGGGAACGA+TGG + chr8.1:16642501-16642520 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 16640710 16643463 16640710 ID=MS.gene061728
chr8.1 mRNA 16640710 16643463 16640710 ID=MS.gene061728.t1;Parent=MS.gene061728
chr8.1 exon 16643279 16643463 16643279 ID=MS.gene061728.t1.exon1;Parent=MS.gene061728.t1
chr8.1 CDS 16643279 16643463 16643279 ID=cds.MS.gene061728.t1;Parent=MS.gene061728.t1
chr8.1 exon 16642853 16642912 16642853 ID=MS.gene061728.t1.exon2;Parent=MS.gene061728.t1
chr8.1 CDS 16642853 16642912 16642853 ID=cds.MS.gene061728.t1;Parent=MS.gene061728.t1
chr8.1 exon 16642750 16642768 16642750 ID=MS.gene061728.t1.exon3;Parent=MS.gene061728.t1
chr8.1 CDS 16642750 16642768 16642750 ID=cds.MS.gene061728.t1;Parent=MS.gene061728.t1
chr8.1 exon 16642567 16642631 16642567 ID=MS.gene061728.t1.exon4;Parent=MS.gene061728.t1
chr8.1 CDS 16642567 16642631 16642567 ID=cds.MS.gene061728.t1;Parent=MS.gene061728.t1
chr8.1 exon 16642465 16642480 16642465 ID=MS.gene061728.t1.exon5;Parent=MS.gene061728.t1
chr8.1 CDS 16642465 16642480 16642465 ID=cds.MS.gene061728.t1;Parent=MS.gene061728.t1
chr8.1 exon 16642300 16642361 16642300 ID=MS.gene061728.t1.exon6;Parent=MS.gene061728.t1
chr8.1 CDS 16642300 16642361 16642300 ID=cds.MS.gene061728.t1;Parent=MS.gene061728.t1
chr8.1 exon 16641722 16641818 16641722 ID=MS.gene061728.t1.exon7;Parent=MS.gene061728.t1
chr8.1 CDS 16641722 16641818 16641722 ID=cds.MS.gene061728.t1;Parent=MS.gene061728.t1
chr8.1 exon 16641546 16641593 16641546 ID=MS.gene061728.t1.exon8;Parent=MS.gene061728.t1
chr8.1 CDS 16641546 16641593 16641546 ID=cds.MS.gene061728.t1;Parent=MS.gene061728.t1
chr8.1 exon 16641334 16641461 16641334 ID=MS.gene061728.t1.exon9;Parent=MS.gene061728.t1
chr8.1 CDS 16641334 16641461 16641334 ID=cds.MS.gene061728.t1;Parent=MS.gene061728.t1
chr8.1 exon 16640710 16641109 16640710 ID=MS.gene061728.t1.exon10;Parent=MS.gene061728.t1
chr8.1 CDS 16640710 16641109 16640710 ID=cds.MS.gene061728.t1;Parent=MS.gene061728.t1
Gene Sequence

>MS.gene061728

ATGGGGAGAGTTAAATTGAAGATAAAGAAATTGGAGAGCACAAGCAACCGACATGTGACTTATTCGAAGCGGAAAAGTGGGATCTTGAAGAAAGCAAAAGAGTTATCAATTCTATGTGATATAGATATTCTCCTTCTCATGTTTTCTCCAACAGGAAAGCCTACGTTATTACAGGGAGAACGAAGGTAATGTAATAATAACGGTGAAGCATTAATATGTGTCACATGTTTCTAGTACGACGAACAATTGTTTCCTTCTTGTGATAAAATGAGAAAATGGTACAATAATTGTTGAATGATTAACATGCGTCGTCGATTGATCAATATGTGAATCACACACTTATCATTTTAATCTCAAAGGACGGAGTTCAAATATTTTAAAAAAATGGTTGTAACATGAACTTTAGTGTCGAATAAGAGAGTTTTCCTTAAAAAAAAAATAGATATACTAGACTAATATAAAATCCATCTTTAAAGTGTGTAAAAGTCGAAGGAAATATCAAATATATGACAAGTTTTGAATGAACATGCATGTTGATTTTATTTTTCCAGCAATATGGAGGAGATCATTGCAAAATTTGCCCAACTTAGCCCACAAGAAAGGGCTAAAAGGTTAGTCAAATTTTCCCACTAAATATTTATTTTTATTTATTCATGATGAATGATCTAATATCTTTTCTTGTTCTAATTGAGCAGGAAAATGGAAAGTCTTGAAGTAAGATTACTTTTATCTCCTCGTAATTCATATATTACTTTTGTTGCATCGAGTGTGTATTTGATGTAGTCTCAATTTTCAGTCATTGCTTAAAAATTTGGTCTTGTTTAAAATTTAGGCACTGAAAAAAACCTTCAAGAAATTGGATCATGATGTAAAGATACAAGATTTCCTGGGTTCAAGGTAAGTGATTGTGATTATCAAATTATCAATGTCTTCCTTGTAAATGATTTTGAAGATTCTGACCTGTTTTAATTTTCATATTGCAGCAGTCAAACAGTGGAGGTACTGTTTATTCACAAATTATCAAATGGGTTAATAATTGCTTTAGAATCTTAAGCTGGTAATTAGGCGACCAAAGTGTTATGAGTTCAATTGCCATTTGCAGGACCTAAGTCATCAAGTGAGAATCTTACAAGCCCGGCTCACAGAAATACAACAGAGACTGAGGTGCAACTTTGGAGCTTTTGGTTGTTAAAGTATTTCTTTTTCTTTTTTGTGTTATTTTATTGTTCTCTTGTTGAACTATTATTCATTCAGCCTCTACCTTACCAATTTTGTATGTGCTTTGCAATTGTTGTATACCTGTATTAATTATGAGTGTGTATGTACTTTTTTTCCTTGTTCAATTTAAATTTTTCGTATTCTTTTTTTCGTTATCATTCACATATCTTCATTCACATTTCATTAAAATTGTTTCACACAACACTATTTGACATTTATGAGACTTATAAGCATTATAGACAAACTATTCTAACCCCATGCCTTTAGCTCACACCAAATAAACACCACCCAAAAAAAAATGTGTTTGTCGAAACCTATACTTTTTTGGTACAAACTCTGTTGATTAAAACATCACCAAATTATGTCAAATACTATCATAATTTGGGCTATCATATAGTAATGTTGTTTTGAATATGTAATATCTCAGTTATTGGAGTAATCTGGAGAAGATCAGTAACTTGGAACATCTTAGACAAATGGAAGACTCACTCAGGGAATCAATCAATCGATTGTCTATACAAAAGGTAATATTTGGTTTCATGCGGACTAGTCATACAATTATATCATTTTCCATCGTTCCCGTCCCCTTAGAAAATCGTTGTGATTAAGAGTTGTGAAGATGTGTGTATTGATATTTTGATTTCATCGGCAGGAAAATCTCGAAAAGCACCAACTAATGTCACTTGAATGCGTTAACCAGGTAAATAATAGTGTATTTTCCCTTTTTTCTATCTATTATTATAATTTTTGAAATAATCTTATCCGGGGTGATATTGATTCATAGTTACCAGAAGGGATGACTTTGCCCTTAATGATGTCTGGTCTACAAGAATCTCAACCTTTGTCTTGGCTTCTAAGTGGTGATAATCACCAGTTGATGTTACCTAGTGAACCAAAGTTTATGTCATTCAGGTGAGTTAACAAGTTGCTTTCATAGACATAAAGAGCTTTATAACAAAAGTGGATCGCATTTATACGAGAGTTATACATTTTAATGAACTTTCATATTTGCTTTTTAACTAATATGTTTCATAATTCTGCTAATTTTTCAAATGTTCACTATGAAAATAAAATAAAATATATATATTGCTTATTTCATTTTATAATCTAGTTATTAATTTAATTACGTTACATAGTGACAATGTCAATAGAGATGTTGAGTGCTCAACCGACATTTCACTCCCAAGCTATTCTGGTTATACTGGGAACTGCAAACTGGAGGTGGGAAGCTCTCCACATGTCACTATTTTGGGTCAGGGAGGTGGTACCTTGAATGAGTTAAATGGAAATCCAAATCCTTACTTAAATGTGCAACAGTGTCAGCAGTTTGCATACCCTCCTCCACAAGATCTTGAGGAAGTGAAACATCACCAACCAATCAATAGCAAATCAAATAACGTGGACTACCAAGTTAATAACAATTATGATCTGCCAAAATCACTATTTGAAAATGGACACCAGTTTTGGAATTCTACAAATGGCTCTTGTGGTATTGCTATGTATAACGAGAATGGTTACCATAGGGTAAGCATGTAG
Protein sequence

>MS.gene061728.t1

MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNMEEIIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTVEDLSHQVRILQARLTEIQQRLSYWSNLEKISNLEHLRQMEDSLRESINRLSIQKENLEKHQLMSLECVNQLPEGMTLPLMMSGLQESQPLSWLLSGDNHQLMLPSEPKFMSFSDNVNRDVECSTDISLPSYSGYTGNCKLEVGSSPHVTILGQGGGTLNELNGNPNPYLNVQQCQQFAYPPPQDLEEVKHHQPINSKSNNVDYQVNNNYDLPKSLFENGHQFWNSTNGSCGIAMYNENGYHRVSM