Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061791.t1 | XP_024627970.1 | 86.3 | 256 | 34 | 1 | 1 | 255 | 27 | 282 | 3.40E-121 | 444.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061791.t1 | Q943I6 | 60.4 | 159 | 60 | 2 | 85 | 241 | 268 | 425 | 1.4e-54 | 214.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061791.t1 | A0A396GP78 | 86.3 | 256 | 34 | 1 | 1 | 255 | 27 | 282 | 2.4e-121 | 444.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene061791.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061791.t1 | MTR_8g017210 | 33.929 | 168 | 96 | 6 | 83 | 250 | 75 | 227 | 3.03e-22 | 95.9 |
MS.gene061791.t1 | MTR_2g093960 | 33.333 | 183 | 100 | 6 | 83 | 253 | 45 | 217 | 8.86e-22 | 94.0 |
MS.gene061791.t1 | MTR_4g059870 | 33.721 | 172 | 99 | 6 | 83 | 254 | 51 | 207 | 9.35e-22 | 94.4 |
MS.gene061791.t1 | MTR_1g093095 | 37.671 | 146 | 85 | 5 | 101 | 243 | 117 | 259 | 1.39e-21 | 91.7 |
MS.gene061791.t1 | MTR_2g099990 | 32.370 | 173 | 102 | 6 | 83 | 255 | 59 | 216 | 9.73e-21 | 91.3 |
MS.gene061791.t1 | MTR_1g112270 | 32.450 | 151 | 91 | 5 | 80 | 230 | 54 | 193 | 1.20e-19 | 88.2 |
MS.gene061791.t1 | MTR_2g090745 | 33.333 | 162 | 93 | 6 | 69 | 230 | 10 | 156 | 1.34e-19 | 87.8 |
MS.gene061791.t1 | MTR_1g112270 | 32.432 | 148 | 89 | 5 | 83 | 230 | 68 | 204 | 2.13e-19 | 87.8 |
MS.gene061791.t1 | MTR_2g099990 | 33.333 | 162 | 93 | 6 | 94 | 255 | 1 | 147 | 4.56e-19 | 85.9 |
MS.gene061791.t1 | MTR_1g016010 | 35.811 | 148 | 85 | 5 | 83 | 230 | 54 | 191 | 4.98e-19 | 86.3 |
MS.gene061791.t1 | MTR_1g094115 | 33.113 | 151 | 90 | 5 | 80 | 230 | 57 | 196 | 1.01e-18 | 85.5 |
MS.gene061791.t1 | MTR_1g094115 | 35.878 | 131 | 73 | 5 | 100 | 230 | 60 | 179 | 7.67e-17 | 80.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061791.t1 | AT1G34370 | 54.348 | 184 | 72 | 4 | 84 | 257 | 19 | 200 | 3.50e-65 | 205 |
MS.gene061791.t1 | AT1G34370 | 54.348 | 184 | 72 | 4 | 84 | 257 | 229 | 410 | 4.00e-64 | 208 |
MS.gene061791.t1 | AT1G34370 | 54.348 | 184 | 72 | 4 | 84 | 257 | 229 | 410 | 4.00e-64 | 208 |
MS.gene061791.t1 | AT5G22890 | 55.882 | 170 | 70 | 2 | 85 | 250 | 203 | 371 | 2.88e-62 | 200 |
MS.gene061791.t1 | AT1G13290 | 38.095 | 147 | 86 | 4 | 101 | 245 | 103 | 246 | 2.35e-22 | 94.0 |
MS.gene061791.t1 | AT5G66730 | 36.486 | 148 | 83 | 5 | 83 | 230 | 45 | 181 | 3.01e-22 | 95.9 |
MS.gene061791.t1 | AT5G60470 | 34.615 | 156 | 90 | 5 | 75 | 230 | 47 | 190 | 3.48e-22 | 95.5 |
MS.gene061791.t1 | AT5G60470 | 34.615 | 156 | 90 | 5 | 75 | 230 | 51 | 194 | 3.59e-22 | 95.5 |
MS.gene061791.t1 | AT5G60470 | 34.228 | 149 | 88 | 4 | 82 | 230 | 47 | 185 | 3.66e-22 | 95.1 |
MS.gene061791.t1 | AT5G03150 | 35.811 | 148 | 85 | 4 | 83 | 230 | 66 | 203 | 5.64e-22 | 95.1 |
MS.gene061791.t1 | AT5G44160 | 35.135 | 148 | 85 | 5 | 83 | 230 | 50 | 186 | 6.04e-22 | 94.7 |
MS.gene061791.t1 | AT3G45260 | 31.977 | 172 | 103 | 5 | 83 | 254 | 52 | 209 | 6.19e-22 | 94.7 |
MS.gene061791.t1 | AT3G45260 | 31.977 | 172 | 103 | 5 | 83 | 254 | 52 | 209 | 6.19e-22 | 94.7 |
MS.gene061791.t1 | AT5G44160 | 35.135 | 148 | 85 | 5 | 83 | 230 | 11 | 147 | 8.17e-22 | 94.0 |
MS.gene061791.t1 | AT3G50700 | 36.471 | 170 | 91 | 7 | 61 | 230 | 31 | 183 | 1.01e-21 | 94.0 |
MS.gene061791.t1 | AT1G08290 | 38.298 | 141 | 81 | 5 | 101 | 239 | 182 | 318 | 1.63e-21 | 92.4 |
MS.gene061791.t1 | AT1G51220 | 39.189 | 148 | 83 | 6 | 101 | 246 | 180 | 322 | 2.10e-21 | 92.0 |
MS.gene061791.t1 | AT1G03840 | 35.099 | 151 | 87 | 5 | 80 | 230 | 49 | 188 | 2.18e-21 | 93.2 |
MS.gene061791.t1 | AT1G03840 | 35.135 | 148 | 85 | 5 | 83 | 230 | 54 | 190 | 3.97e-21 | 92.4 |
MS.gene061791.t1 | AT1G55110 | 32.934 | 167 | 98 | 5 | 83 | 249 | 76 | 228 | 6.69e-21 | 91.7 |
MS.gene061791.t1 | AT1G55110 | 32.934 | 167 | 98 | 5 | 83 | 249 | 76 | 228 | 6.69e-21 | 91.7 |
MS.gene061791.t1 | AT1G55110 | 32.934 | 167 | 98 | 5 | 83 | 249 | 76 | 228 | 6.69e-21 | 91.7 |
MS.gene061791.t1 | AT3G20880 | 39.716 | 141 | 78 | 6 | 101 | 239 | 258 | 393 | 4.10e-20 | 89.0 |
MS.gene061791.t1 | AT3G13810 | 35.135 | 148 | 86 | 4 | 83 | 230 | 83 | 220 | 5.34e-20 | 89.4 |
MS.gene061791.t1 | AT3G13810 | 35.135 | 148 | 86 | 4 | 83 | 230 | 83 | 220 | 5.34e-20 | 89.4 |
MS.gene061791.t1 | AT3G13810 | 35.135 | 148 | 86 | 4 | 83 | 230 | 78 | 215 | 5.60e-20 | 89.4 |
MS.gene061791.t1 | AT3G13810 | 35.135 | 148 | 86 | 4 | 83 | 230 | 64 | 201 | 5.95e-20 | 89.0 |
MS.gene061791.t1 | AT4G02670 | 32.039 | 206 | 117 | 7 | 25 | 230 | 23 | 205 | 6.87e-20 | 88.6 |
MS.gene061791.t1 | AT4G02670 | 32.039 | 206 | 117 | 7 | 25 | 230 | 21 | 203 | 7.41e-20 | 88.2 |
MS.gene061791.t1 | AT3G13810 | 35.135 | 148 | 86 | 4 | 83 | 230 | 70 | 207 | 9.20e-20 | 88.6 |
MS.gene061791.t1 | AT3G13810 | 35.135 | 148 | 86 | 4 | 83 | 230 | 84 | 221 | 9.22e-20 | 88.6 |
MS.gene061791.t1 | AT2G02070 | 32.450 | 151 | 91 | 5 | 80 | 230 | 62 | 201 | 1.76e-19 | 87.8 |
MS.gene061791.t1 | AT2G02070 | 32.450 | 151 | 91 | 5 | 80 | 230 | 62 | 201 | 1.76e-19 | 87.8 |
MS.gene061791.t1 | AT1G34790 | 34.132 | 167 | 99 | 7 | 92 | 252 | 137 | 298 | 4.43e-19 | 85.1 |
MS.gene061791.t1 | AT1G14580 | 32.051 | 156 | 93 | 6 | 75 | 230 | 60 | 202 | 5.81e-19 | 86.3 |
MS.gene061791.t1 | AT1G14580 | 32.051 | 156 | 93 | 6 | 75 | 230 | 60 | 202 | 5.81e-19 | 86.3 |
MS.gene061791.t1 | AT1G14580 | 32.051 | 156 | 93 | 6 | 75 | 230 | 74 | 216 | 7.11e-19 | 85.9 |
MS.gene061791.t1 | AT2G02080 | 30.526 | 190 | 108 | 8 | 75 | 257 | 61 | 233 | 1.28e-18 | 85.1 |
MS.gene061791.t1 | AT2G02080 | 30.526 | 190 | 108 | 8 | 75 | 257 | 61 | 233 | 1.28e-18 | 85.1 |
MS.gene061791.t1 | AT2G02080 | 30.526 | 190 | 108 | 8 | 75 | 257 | 61 | 233 | 1.28e-18 | 85.1 |
MS.gene061791.t1 | AT2G02080 | 30.526 | 190 | 108 | 8 | 75 | 257 | 61 | 233 | 1.28e-18 | 85.1 |
MS.gene061791.t1 | AT3G57670 | 35.172 | 145 | 87 | 5 | 101 | 243 | 219 | 358 | 4.43e-18 | 83.2 |
MS.gene061791.t1 | AT1G25250 | 33.750 | 160 | 96 | 5 | 72 | 230 | 12 | 162 | 1.30e-17 | 81.6 |
MS.gene061791.t1 | AT1G25250 | 35.570 | 149 | 86 | 5 | 83 | 230 | 46 | 185 | 1.76e-17 | 81.3 |
MS.gene061791.t1 | AT2G01940 | 37.013 | 154 | 76 | 8 | 83 | 230 | 57 | 195 | 2.58e-17 | 81.3 |
MS.gene061791.t1 | AT1G68130 | 35.570 | 149 | 85 | 5 | 83 | 230 | 54 | 192 | 4.35e-17 | 80.5 |
MS.gene061791.t1 | AT2G02080 | 30.409 | 171 | 97 | 7 | 94 | 257 | 1 | 156 | 1.93e-16 | 78.6 |
MS.gene061791.t1 | AT2G02080 | 30.409 | 171 | 97 | 7 | 94 | 257 | 1 | 156 | 1.93e-16 | 78.6 |
MS.gene061791.t1 | AT2G01940 | 36.620 | 142 | 69 | 8 | 83 | 218 | 57 | 183 | 3.28e-14 | 72.0 |
Find 62 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAGGAATTGTTATTGTTTC+TGG | 0.118268 | 4.3:-10211667 | None:intergenic |
CATGTCATCGTCAATGTAAT+TGG | 0.286361 | 4.3:-10211722 | None:intergenic |
TCCACTTCTGCGAGATTTGC+GGG | 0.292814 | 4.3:+10211815 | MS.gene061791:CDS |
TGCGTCGAGTTCCACAATTT+TGG | 0.303992 | 4.3:-10211770 | None:intergenic |
ATGAAGGTTGCAAACGTAAC+AGG | 0.321705 | 4.3:+10211971 | MS.gene061791:CDS |
GACAATGACTTCTCTTGAAA+TGG | 0.326614 | 4.3:-10212041 | None:intergenic |
TCTAGGAAGGAGAAATTGTT+TGG | 0.374626 | 4.3:+10212186 | MS.gene061791:CDS |
GACGAATTGTGGAGGAGATT+TGG | 0.390719 | 4.3:-10211606 | None:intergenic |
GAGGACTGTGTTTGTTTGAA+TGG | 0.398093 | 4.3:-10211554 | None:intergenic |
TGTGTTTGTTTGAATGGATT+GGG | 0.410517 | 4.3:-10211548 | None:intergenic |
CTGTGTTTGTTTGAATGGAT+TGG | 0.411205 | 4.3:-10211549 | None:intergenic |
TTTGGAATGGTAGTTATGAA+TGG | 0.430613 | 4.3:-10211752 | None:intergenic |
GGAAAAGCAATCGCGTTTAA+CGG | 0.442683 | 4.3:+10211927 | MS.gene061791:CDS |
TTACGTTTGCAACCTTCATA+AGG | 0.442930 | 4.3:-10211967 | None:intergenic |
TTGGAATGGTAGTTATGAAT+GGG | 0.447738 | 4.3:-10211751 | None:intergenic |
GAAGTTCAATCCGTTGAAAT+CGG | 0.449794 | 4.3:+10212002 | MS.gene061791:CDS |
GGACACGTGGAGCGGTTTGA+AGG | 0.462859 | 4.3:+10212207 | MS.gene061791:CDS |
TTCTGCGAGATTTGCGGGAA+AGG | 0.464202 | 4.3:+10211820 | MS.gene061791:CDS |
TTCCACTTCTGCGAGATTTG+CGG | 0.470603 | 4.3:+10211814 | MS.gene061791:CDS |
AATTGTGGAGGAGATTTGGT+TGG | 0.477694 | 4.3:-10211602 | None:intergenic |
TAACTACCATTCCAAAATTG+TGG | 0.494523 | 4.3:+10211759 | MS.gene061791:CDS |
AAAATCAATGACGGCGGCGC+CGG | 0.497008 | 4.3:+10212260 | MS.gene061791:CDS |
CCGGCAGAAGGAGGAAGGTG+TGG | 0.508036 | 4.3:+10212279 | MS.gene061791:CDS |
ATGACGGCGGCGCCGGCAGA+AGG | 0.519726 | 4.3:+10212267 | MS.gene061791:CDS |
GTCGAGTATAACTCGGTTGG+AGG | 0.524381 | 4.3:-10211685 | None:intergenic |
CCGGCGGTTGTTGAAGAGAA+AGG | 0.528093 | 4.3:+10212237 | MS.gene061791:CDS |
CCACACCTTCCTCCTTCTGC+CGG | 0.531668 | 4.3:-10212279 | None:intergenic |
TCCCGCAAATCTCGCAGAAG+TGG | 0.537900 | 4.3:-10211816 | None:intergenic |
AAACAGAACACCGATTTCAA+CGG | 0.538702 | 4.3:-10212012 | None:intergenic |
GAGTCACGTGAAACAGTGTA+GGG | 0.546406 | 4.3:+10212125 | MS.gene061791:CDS |
GATGATGACTTGACGAATTG+TGG | 0.554147 | 4.3:-10211617 | None:intergenic |
TGTTATTGTTTCTGGACAAG+TGG | 0.555781 | 4.3:-10211659 | None:intergenic |
ACGGCGGCGCCGGCAGAAGG+AGG | 0.560880 | 4.3:+10212270 | MS.gene061791:CDS |
GGAGAAATTGTTTGGACACG+TGG | 0.562238 | 4.3:+10212194 | MS.gene061791:CDS |
CGGCGCCGGCAGAAGGAGGA+AGG | 0.567519 | 4.3:+10212274 | MS.gene061791:CDS |
CAATTACATTGACGATGACA+TGG | 0.570490 | 4.3:+10211723 | MS.gene061791:CDS |
CGAAAACTCACACGTGCGAT+CGG | 0.572334 | 4.3:+10212064 | MS.gene061791:CDS |
CTCACACGTGCGATCGGTGT+CGG | 0.577837 | 4.3:+10212070 | MS.gene061791:CDS |
CGTATGCACATGCGCGCGCA+CGG | 0.585406 | 4.3:+10211865 | MS.gene061791:CDS |
CCTTTCTCTTCAACAACCGC+CGG | 0.591632 | 4.3:-10212237 | None:intergenic |
CGGCAGAAGGAGGAAGGTGT+GGG | 0.597583 | 4.3:+10212280 | MS.gene061791:CDS |
AGAGTCACGTGAAACAGTGT+AGG | 0.598901 | 4.3:+10212124 | MS.gene061791:CDS |
GCGCGCGCATGTGCATACGC+AGG | 0.610043 | 4.3:-10211861 | None:intergenic |
GCGGTTTGAAGGACACTCGC+CGG | 0.611639 | 4.3:+10212218 | MS.gene061791:CDS |
CCTGTCGAGTATAACTCGGT+TGG | 0.613205 | 4.3:-10211688 | None:intergenic |
CCAACCGAGTTATACTCGAC+AGG | 0.616167 | 4.3:+10211688 | MS.gene061791:CDS |
TCCACGTGGAAGTGTTCGTG+TGG | 0.623338 | 4.3:+10212153 | MS.gene061791:CDS |
ACCACCTGTCGAGTATAACT+CGG | 0.632991 | 4.3:-10211692 | None:intergenic |
ATGAAGCGTTACGTAGCGTG+AGG | 0.636493 | 4.3:+10211905 | MS.gene061791:CDS |
AATTGTGGAACTCGACGCAG+TGG | 0.638379 | 4.3:+10211774 | MS.gene061791:CDS |
TTTCTCCTTCCTAGAAAACG+TGG | 0.641293 | 4.3:-10212178 | None:intergenic |
AATTGTTTGGACACGTGGAG+CGG | 0.644804 | 4.3:+10212199 | MS.gene061791:CDS |
GTTTGAAGGACACTCGCCGG+CGG | 0.649562 | 4.3:+10212221 | MS.gene061791:CDS |
ACACGTGCGATCGGTGTCGG+AGG | 0.660805 | 4.3:+10212073 | MS.gene061791:CDS |
AGAGAAAGGAAAATCAATGA+CGG | 0.662591 | 4.3:+10212251 | MS.gene061791:CDS |
TGAAGCGTTACGTAGCGTGA+GGG | 0.667496 | 4.3:+10211906 | MS.gene061791:CDS |
GAAAGGAAAATCAATGACGG+CGG | 0.669060 | 4.3:+10212254 | MS.gene061791:CDS |
ACCGAGTTATACTCGACAGG+TGG | 0.698259 | 4.3:+10211691 | MS.gene061791:CDS |
AGTGTAGGGGAGAGTCCACG+TGG | 0.705085 | 4.3:+10212139 | MS.gene061791:CDS |
GATGACTTGACGAATTGTGG+AGG | 0.731309 | 4.3:-10211614 | None:intergenic |
AGTCACGTGAAACAGTGTAG+GGG | 0.737402 | 4.3:+10212126 | MS.gene061791:CDS |
TCCACACGAACACTTCCACG+TGG | 0.747159 | 4.3:-10212154 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AGAGAAAGGAAAATCAATGA+CGG | + | chr4.3:10212251-10212270 | MS.gene061791:CDS | 30.0% | |
TAACTACCATTCCAAAATTG+TGG | + | chr4.3:10211759-10211778 | MS.gene061791:CDS | 30.0% | |
TTGGAATGGTAGTTATGAAT+GGG | - | chr4.3:10211754-10211773 | None:intergenic | 30.0% | |
! | TGTGTTTGTTTGAATGGATT+GGG | - | chr4.3:10211551-10211570 | None:intergenic | 30.0% |
! | TTTGGAATGGTAGTTATGAA+TGG | - | chr4.3:10211755-10211774 | None:intergenic | 30.0% |
!!! | AGTGAGTCTAAGTTTTGTTT+GGG | - | chr4.3:10211580-10211599 | None:intergenic | 30.0% |
CAATTACATTGACGATGACA+TGG | + | chr4.3:10211723-10211742 | MS.gene061791:CDS | 35.0% | |
CATGTCATCGTCAATGTAAT+TGG | - | chr4.3:10211725-10211744 | None:intergenic | 35.0% | |
CTGTGTTTGTTTGAATGGAT+TGG | - | chr4.3:10211552-10211571 | None:intergenic | 35.0% | |
GAAGTTCAATCCGTTGAAAT+CGG | + | chr4.3:10212002-10212021 | MS.gene061791:CDS | 35.0% | |
GACAATGACTTCTCTTGAAA+TGG | - | chr4.3:10212044-10212063 | None:intergenic | 35.0% | |
TCTAGGAAGGAGAAATTGTT+TGG | + | chr4.3:10212186-10212205 | MS.gene061791:CDS | 35.0% | |
TTACGTTTGCAACCTTCATA+AGG | - | chr4.3:10211970-10211989 | None:intergenic | 35.0% | |
! | CGATTTTCTTGTCCTTATGA+AGG | + | chr4.3:10211955-10211974 | MS.gene061791:CDS | 35.0% |
! | GGAGGAATTGTTATTGTTTC+TGG | - | chr4.3:10211670-10211689 | None:intergenic | 35.0% |
!! | AAACAGAACACCGATTTCAA+CGG | - | chr4.3:10212015-10212034 | None:intergenic | 35.0% |
!! | TGTTATTGTTTCTGGACAAG+TGG | - | chr4.3:10211662-10211681 | None:intergenic | 35.0% |
!!! | GAGTGAGTCTAAGTTTTGTT+TGG | - | chr4.3:10211581-10211600 | None:intergenic | 35.0% |
!!! | GTGAGTCTAAGTTTTGTTTG+GGG | - | chr4.3:10211579-10211598 | None:intergenic | 35.0% |
ATGAAGGTTGCAAACGTAAC+AGG | + | chr4.3:10211971-10211990 | MS.gene061791:CDS | 40.0% | |
GAAAGGAAAATCAATGACGG+CGG | + | chr4.3:10212254-10212273 | MS.gene061791:CDS | 40.0% | |
GAGGACTGTGTTTGTTTGAA+TGG | - | chr4.3:10211557-10211576 | None:intergenic | 40.0% | |
GATGATGACTTGACGAATTG+TGG | - | chr4.3:10211620-10211639 | None:intergenic | 40.0% | |
GGAAAAGCAATCGCGTTTAA+CGG | + | chr4.3:10211927-10211946 | MS.gene061791:CDS | 40.0% | |
TTTCTCCTTCCTAGAAAACG+TGG | - | chr4.3:10212181-10212200 | None:intergenic | 40.0% | |
! | AATTGTGGAGGAGATTTGGT+TGG | - | chr4.3:10211605-10211624 | None:intergenic | 40.0% |
!! | CGAGTTCCACAATTTTGGAA+TGG | - | chr4.3:10211768-10211787 | None:intergenic | 40.0% |
!!! | AGTCTAAGTTTTGTTTGGGG+AGG | - | chr4.3:10211576-10211595 | None:intergenic | 40.0% |
AATTGTTTGGACACGTGGAG+CGG | + | chr4.3:10212199-10212218 | MS.gene061791:CDS | 45.0% | |
ACCACCTGTCGAGTATAACT+CGG | - | chr4.3:10211695-10211714 | None:intergenic | 45.0% | |
AGAGTCACGTGAAACAGTGT+AGG | + | chr4.3:10212124-10212143 | MS.gene061791:CDS | 45.0% | |
AGTCACGTGAAACAGTGTAG+GGG | + | chr4.3:10212126-10212145 | MS.gene061791:CDS | 45.0% | |
GACGAATTGTGGAGGAGATT+TGG | - | chr4.3:10211609-10211628 | None:intergenic | 45.0% | |
GAGTCACGTGAAACAGTGTA+GGG | + | chr4.3:10212125-10212144 | MS.gene061791:CDS | 45.0% | |
GATGACTTGACGAATTGTGG+AGG | - | chr4.3:10211617-10211636 | None:intergenic | 45.0% | |
GGAGAAATTGTTTGGACACG+TGG | + | chr4.3:10212194-10212213 | MS.gene061791:CDS | 45.0% | |
TTCCACTTCTGCGAGATTTG+CGG | + | chr4.3:10211814-10211833 | MS.gene061791:CDS | 45.0% | |
! | TGCGTCGAGTTCCACAATTT+TGG | - | chr4.3:10211773-10211792 | None:intergenic | 45.0% |
!! | TGGAACCACGTTTTCTAGGA+AGG | + | chr4.3:10212173-10212192 | MS.gene061791:CDS | 45.0% |
AATTGTGGAACTCGACGCAG+TGG | + | chr4.3:10211774-10211793 | MS.gene061791:CDS | 50.0% | |
ACCGAGTTATACTCGACAGG+TGG | + | chr4.3:10211691-10211710 | MS.gene061791:CDS | 50.0% | |
CCAACCGAGTTATACTCGAC+AGG | + | chr4.3:10211688-10211707 | MS.gene061791:CDS | 50.0% | |
CCTGTCGAGTATAACTCGGT+TGG | - | chr4.3:10211691-10211710 | None:intergenic | 50.0% | |
CCTTTCTCTTCAACAACCGC+CGG | - | chr4.3:10212240-10212259 | None:intergenic | 50.0% | |
CGAAAACTCACACGTGCGAT+CGG | + | chr4.3:10212064-10212083 | MS.gene061791:CDS | 50.0% | |
GTCGAGTATAACTCGGTTGG+AGG | - | chr4.3:10211688-10211707 | None:intergenic | 50.0% | |
TCCACTTCTGCGAGATTTGC+GGG | + | chr4.3:10211815-10211834 | MS.gene061791:CDS | 50.0% | |
TTCTGCGAGATTTGCGGGAA+AGG | + | chr4.3:10211820-10211839 | MS.gene061791:CDS | 50.0% | |
! | ATGAAGCGTTACGTAGCGTG+AGG | + | chr4.3:10211905-10211924 | MS.gene061791:CDS | 50.0% |
! | CGATCGCACGTGTGAGTTTT+CGG | - | chr4.3:10212066-10212085 | None:intergenic | 50.0% |
! | CGTGTGGAACCACGTTTTCT+AGG | + | chr4.3:10212169-10212188 | MS.gene061791:CDS | 50.0% |
! | GAAGAGTTTTGCGGTGGTGT+CGG | + | chr4.3:10212095-10212114 | MS.gene061791:CDS | 50.0% |
! | GTGTCGGAGGAAGAGTTTTG+CGG | + | chr4.3:10212086-10212105 | MS.gene061791:CDS | 50.0% |
! | TGAAGCGTTACGTAGCGTGA+GGG | + | chr4.3:10211906-10211925 | MS.gene061791:CDS | 50.0% |
AAAATCAATGACGGCGGCGC+CGG | + | chr4.3:10212260-10212279 | MS.gene061791:CDS | 55.0% | |
CCGGCGGTTGTTGAAGAGAA+AGG | + | chr4.3:10212237-10212256 | MS.gene061791:CDS | 55.0% | |
TCCACACGAACACTTCCACG+TGG | - | chr4.3:10212157-10212176 | None:intergenic | 55.0% | |
TCCCGCAAATCTCGCAGAAG+TGG | - | chr4.3:10211819-10211838 | None:intergenic | 55.0% | |
! | TCGGAGGAAGAGTTTTGCGG+TGG | + | chr4.3:10212089-10212108 | MS.gene061791:CDS | 55.0% |
!! | TCCACGTGGAAGTGTTCGTG+TGG | + | chr4.3:10212153-10212172 | MS.gene061791:CDS | 55.0% |
AGTGTAGGGGAGAGTCCACG+TGG | + | chr4.3:10212139-10212158 | MS.gene061791:CDS | 60.0% | |
CCACACCTTCCTCCTTCTGC+CGG | - | chr4.3:10212282-10212301 | None:intergenic | 60.0% | |
CTCACACGTGCGATCGGTGT+CGG | + | chr4.3:10212070-10212089 | MS.gene061791:CDS | 60.0% | |
GCGGTTTGAAGGACACTCGC+CGG | + | chr4.3:10212218-10212237 | MS.gene061791:CDS | 60.0% | |
GGACACGTGGAGCGGTTTGA+AGG | + | chr4.3:10212207-10212226 | MS.gene061791:CDS | 60.0% | |
GTTTGAAGGACACTCGCCGG+CGG | + | chr4.3:10212221-10212240 | MS.gene061791:CDS | 60.0% | |
! | CGGCAGAAGGAGGAAGGTGT+GGG | + | chr4.3:10212280-10212299 | MS.gene061791:CDS | 60.0% |
CCGGCAGAAGGAGGAAGGTG+TGG | + | chr4.3:10212279-10212298 | MS.gene061791:CDS | 65.0% | |
CGTATGCACATGCGCGCGCA+CGG | + | chr4.3:10211865-10211884 | MS.gene061791:CDS | 65.0% | |
!! | ACACGTGCGATCGGTGTCGG+AGG | + | chr4.3:10212073-10212092 | MS.gene061791:CDS | 65.0% |
GCGCGCGCATGTGCATACGC+AGG | - | chr4.3:10211864-10211883 | None:intergenic | 70.0% | |
!! | ATGACGGCGGCGCCGGCAGA+AGG | + | chr4.3:10212267-10212286 | MS.gene061791:CDS | 75.0% |
!! | CGGCGCCGGCAGAAGGAGGA+AGG | + | chr4.3:10212274-10212293 | MS.gene061791:CDS | 75.0% |
!!! | ACGGCGGCGCCGGCAGAAGG+AGG | + | chr4.3:10212270-10212289 | MS.gene061791:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 10211523 | 10212305 | 10211523 | ID=MS.gene061791 |
chr4.3 | mRNA | 10211523 | 10212305 | 10211523 | ID=MS.gene061791.t1;Parent=MS.gene061791 |
chr4.3 | exon | 10211523 | 10212305 | 10211523 | ID=MS.gene061791.t1.exon1;Parent=MS.gene061791.t1 |
chr4.3 | CDS | 10211523 | 10212305 | 10211523 | ID=cds.MS.gene061791.t1;Parent=MS.gene061791.t1 |
Gene Sequence |
Protein sequence |