AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06188

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06188.t1 MTR_8g101650 92.883 281 12 4 1 274 1 280 3.99e-170 471
MS.gene06188.t1 MTR_6g092540 52.145 303 102 13 1 274 1 289 9.01e-75 230
MS.gene06188.t1 MTR_2g100930 53.371 178 65 5 4 169 3 174 1.99e-46 159
MS.gene06188.t1 MTR_4g100630 47.283 184 67 6 4 176 3 167 1.32e-43 151
MS.gene06188.t1 MTR_5g037080 45.143 175 73 5 4 168 5 166 5.27e-38 136
MS.gene06188.t1 MTR_4g111975 67.089 79 25 1 99 176 132 210 4.85e-33 122
MS.gene06188.t1 MTR_3g104370 35.741 263 128 8 4 260 5 232 1.02e-31 117
MS.gene06188.t1 MTR_7g067080 76.056 71 16 1 99 168 134 204 1.01e-30 117
MS.gene06188.t1 MTR_3g462790 71.233 73 20 1 97 168 139 211 2.86e-30 115
MS.gene06188.t1 MTR_5g069710 70.270 74 21 1 96 168 123 196 3.07e-30 115
MS.gene06188.t1 MTR_1g111830 62.791 86 31 1 84 168 103 188 1.14e-29 112
MS.gene06188.t1 MTR_5g081860 64.474 76 24 1 96 168 116 191 5.81e-27 105
MS.gene06188.t1 MTR_4g107230 79.245 53 11 0 99 151 78 130 9.56e-27 105
MS.gene06188.t1 MTR_0036s0260 52.000 100 34 4 89 181 6 98 3.19e-25 99.8
MS.gene06188.t1 MTR_8g063600 60.000 80 29 1 99 175 100 179 2.14e-24 99.8
MS.gene06188.t1 MTR_2g090305 53.000 100 33 4 89 181 6 98 1.92e-23 94.7
MS.gene06188.t1 MTR_1g048660 55.556 81 34 2 106 185 13 92 8.07e-23 90.1
MS.gene06188.t1 MTR_5g088010 49.383 81 37 2 97 173 52 132 6.89e-19 84.0
MS.gene06188.t1 MTR_5g027570 52.632 76 33 2 101 173 88 163 1.18e-18 82.8
MS.gene06188.t1 MTR_1g033620 65.455 55 18 1 120 173 20 74 1.23e-17 80.5
MS.gene06188.t1 MTR_8g063870 54.286 70 29 1 107 173 94 163 1.70e-17 80.5
MS.gene06188.t1 MTR_5g088060 54.930 71 28 2 107 173 274 344 2.81e-17 81.6
MS.gene06188.t1 MTR_5g488160 54.930 71 28 2 107 173 274 344 2.81e-17 81.6
MS.gene06188.t1 MTR_5g027550 57.143 56 24 0 101 156 73 128 5.10e-16 75.5
MS.gene06188.t1 MTR_4g015130 65.455 55 18 1 115 168 3 57 5.29e-16 71.6
MS.gene06188.t1 MTR_1g083180 51.562 64 26 3 107 166 63 125 1.33e-12 65.1
MS.gene06188.t1 MTR_5g075760 63.830 47 16 1 107 153 107 152 1.22e-11 63.2
MS.gene06188.t1 MTR_5g075790 61.702 47 17 1 107 153 115 160 3.96e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06188.t1 AT5G56840 54.891 184 51 5 1 174 1 162 5.64e-53 172
MS.gene06188.t1 AT5G61620 47.904 167 81 3 4 168 10 172 1.88e-44 153
MS.gene06188.t1 AT5G47390 43.062 209 96 5 4 208 3 192 1.07e-43 152
MS.gene06188.t1 AT1G70000 47.514 181 60 6 4 169 3 163 5.52e-40 140
MS.gene06188.t1 AT1G70000 47.514 181 60 6 4 169 3 163 5.52e-40 140
MS.gene06188.t1 AT3G16350 44.286 210 63 7 4 169 3 202 3.85e-36 133
MS.gene06188.t1 AT1G49010 69.737 76 22 1 99 173 128 203 1.40e-32 122
MS.gene06188.t1 AT5G08520 63.855 83 27 2 99 178 112 194 1.74e-31 118
MS.gene06188.t1 AT5G01200 68.293 82 23 2 90 168 129 210 4.86e-31 116
MS.gene06188.t1 AT2G38090 73.239 71 18 1 99 168 135 205 5.59e-30 114
MS.gene06188.t1 AT5G58900 69.863 73 21 1 97 168 133 205 1.85e-29 113
MS.gene06188.t1 AT3G11280 54.128 109 43 3 96 199 118 224 3.03e-28 109
MS.gene06188.t1 AT3G11280 54.128 109 43 3 96 199 118 224 3.03e-28 109
MS.gene06188.t1 AT5G04760 65.714 70 23 1 100 168 94 163 4.54e-27 105
MS.gene06188.t1 AT5G05790 67.568 74 23 1 96 168 122 195 5.13e-27 106
MS.gene06188.t1 AT5G05790 67.568 74 23 1 96 168 122 195 5.13e-27 106
MS.gene06188.t1 AT1G19000 80.392 51 10 0 101 151 98 148 2.64e-25 102
MS.gene06188.t1 AT1G19000 80.392 51 10 0 101 151 98 148 2.64e-25 102
MS.gene06188.t1 AT1G74840 76.923 52 12 0 100 151 91 142 1.82e-24 98.6
MS.gene06188.t1 AT1G74840 76.923 52 12 0 100 151 91 142 2.43e-24 99.0
MS.gene06188.t1 AT3G10580 61.765 68 25 1 101 168 91 157 1.99e-21 90.9
MS.gene06188.t1 AT3G10580 61.765 68 25 1 101 168 91 157 2.64e-21 91.3
MS.gene06188.t1 AT5G23650 56.579 76 32 1 99 173 114 189 2.85e-21 92.0
MS.gene06188.t1 AT4G09450 67.925 53 17 0 101 153 87 139 6.76e-18 80.1
MS.gene06188.t1 AT3G10590 54.930 71 28 3 101 168 105 174 1.43e-14 71.2

Find 63 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAATTAAGTGACGCTAAT+TGG 0.117960 4.2:+3424371 None:intergenic
CCTGCTGGCTCATTCCTTCT+TGG 0.142813 4.2:-3424395 MS.gene06188:CDS
TGCTAATTCAGTAGTAAATT+TGG 0.198359 4.2:-3424636 MS.gene06188:CDS
TTGGAGGACTTCGTCTCTTT+GGG 0.209128 4.2:-3425890 MS.gene06188:CDS
CTTGGAGGACTTCGTCTCTT+TGG 0.217697 4.2:-3425891 MS.gene06188:CDS
TTGTGCAGCAGTGCCTAATT+TGG 0.253498 4.2:-3424468 MS.gene06188:CDS
ATAATTACTCTACAGATAAT+TGG 0.274738 4.2:-3424508 MS.gene06188:CDS
TATACCTTTCTTTCTCTCTT+GGG 0.282804 4.2:+3425671 None:intergenic
ATATACCTTTCTTTCTCTCT+TGG 0.345963 4.2:+3425670 None:intergenic
GAAAGTGTGAGGTCCAAATT+AGG 0.360682 4.2:+3424455 None:intergenic
TTAATTAAGTGACGCTAATT+GGG 0.384534 4.2:+3424372 None:intergenic
CTGTGCTCTTCTTCTGTCCA+TGG 0.393875 4.2:+3425156 None:intergenic
GCTAATTCAGTAGTAAATTT+GGG 0.397356 4.2:-3424635 MS.gene06188:CDS
GAGCACAGAACATTCCTTGT+TGG 0.426067 4.2:-3425141 MS.gene06188:CDS
TGTTCGCATTGTGGTAAGAT+AGG 0.440998 4.2:-3425948 MS.gene06188:CDS
AATGAGGAAGATGGAGAGGA+TGG 0.441387 4.2:+3425789 None:intergenic
CATGGCTAGCGACTTGTGTA+GGG 0.443009 4.2:+3425055 None:intergenic
GCATGGCTAGCGACTTGTGT+AGG 0.465972 4.2:+3425054 None:intergenic
ATACCTTTCTTTCTCTCTTG+GGG 0.468820 4.2:+3425672 None:intergenic
CCAAGAAGGAATGAGCCAGC+AGG 0.469903 4.2:+3424395 None:intergenic
CAAAATCAACCCTCCCCTGC+TGG 0.476253 4.2:-3424410 MS.gene06188:CDS
GGATTAGAGAAGCTAGGAAA+AGG 0.476740 4.2:-3425120 MS.gene06188:CDS
TGCACATCCTTCACTACCCT+TGG 0.478767 4.2:-3425909 MS.gene06188:CDS
AGAAGCTAGGAAAAGGAGAC+TGG 0.482282 4.2:-3425113 MS.gene06188:CDS
CCTTTCTTTCTCTCTTGGGG+TGG 0.484527 4.2:+3425675 None:intergenic
TGGAGAGGATGGTGAGGGAA+AGG 0.486578 4.2:+3425800 None:intergenic
CAAGAAGGAATGAGCCAGCA+GGG 0.487978 4.2:+3424396 None:intergenic
TGCTTCTTCTTGTTTAAAGT+AGG 0.502048 4.2:+3424553 None:intergenic
GTAAGATAGGACATAATTGT+AGG 0.502669 4.2:-3425935 MS.gene06188:CDS
CCACCCCAAGAGAGAAAGAA+AGG 0.504684 4.2:-3425675 MS.gene06188:intron
AGAGAATGAGGAAGATGGAG+AGG 0.510998 4.2:+3425785 None:intergenic
AAGGAATGAGCCAGCAGGGG+AGG 0.519594 4.2:+3424400 None:intergenic
GATGAAGAGAATGAGGAAGA+TGG 0.523435 4.2:+3425780 None:intergenic
AAATTTGGGTCATAAATTTG+AGG 0.527043 4.2:-3424621 MS.gene06188:CDS
ACGAGGAGGATGATGATAGT+TGG 0.527221 4.2:+3425865 None:intergenic
CTTGTTGGATTAGAGAAGCT+AGG 0.528666 4.2:-3425126 MS.gene06188:CDS
TTGATTGATCAGGAGTTCCA+TGG 0.532260 4.2:-3425173 MS.gene06188:intron
ACATCCTTCACTACCCTTGG+AGG 0.544075 4.2:-3425906 MS.gene06188:CDS
TGACGCTAATTGGGCCAAGA+AGG 0.545277 4.2:+3424381 None:intergenic
AGGAATGAGCCAGCAGGGGA+GGG 0.549931 4.2:+3424401 None:intergenic
GGAAGATGGAGAGGATGGTG+AGG 0.553718 4.2:+3425794 None:intergenic
AGATATGAAATATTAGAAGT+GGG 0.561423 4.2:+3425717 None:intergenic
GATCAAGAAAAGCTTTAGCA+TGG 0.562627 4.2:-3425826 MS.gene06188:CDS
TAGATATGAAATATTAGAAG+TGG 0.562815 4.2:+3425716 None:intergenic
GAAGATGGAGAGGATGGTGA+GGG 0.564987 4.2:+3425795 None:intergenic
TGGAGGACTTCGTCTCTTTG+GGG 0.565207 4.2:-3425889 MS.gene06188:CDS
AACACCAACACAAAAGAACA+AGG 0.589703 4.2:-3424662 MS.gene06188:CDS
CAAAGAGACGAAGTCCTCCA+AGG 0.592483 4.2:+3425892 None:intergenic
TGATGTTGATGAAGAGAATG+AGG 0.596418 4.2:+3425773 None:intergenic
CTAGCTTCTCTAATCCAACA+AGG 0.600496 4.2:+3425127 None:intergenic
AGAAGAAAGTGTTCGCATTG+TGG 0.603130 4.2:-3425957 MS.gene06188:CDS
AAGTCCTCCAAGGGTAGTGA+AGG 0.604978 4.2:+3425902 None:intergenic
ACGTTCAAGTCTCTTCGACT+TGG 0.607278 4.2:-3424989 MS.gene06188:intron
TTGTTTAAAGTAGGACAAAG+TGG 0.607562 4.2:+3424562 None:intergenic
TGTGAAGTTGAGATGAATGA+TGG 0.607811 4.2:-3424587 MS.gene06188:CDS
AAGAAGGAATGAGCCAGCAG+GGG 0.613479 4.2:+3424397 None:intergenic
CATGGTACTAGATGATGACG+AGG 0.629229 4.2:+3425848 None:intergenic
AAAGAGACGAAGTCCTCCAA+GGG 0.643343 4.2:+3425893 None:intergenic
ATGGCTAGCGACTTGTGTAG+GGG 0.659705 4.2:+3425056 None:intergenic
CTAGGAAAAGGAGACTGGAG+AGG 0.661686 4.2:-3425108 MS.gene06188:CDS
GGGATGCAACTGAAAGTGTG+AGG 0.693635 4.2:+3424444 None:intergenic
GGTACTAGATGATGACGAGG+AGG 0.697526 4.2:+3425851 None:intergenic
ACACCAACACAAAAGAACAA+GGG 0.712802 4.2:-3424661 MS.gene06188:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATAAAATATTTATTT+AGG + chr4.2:3425591-3425610 None:intergenic 0.0%
!!! TTTTATTATTTTTATTTTTA+TGG - chr4.2:3425600-3425619 MS.gene06188:intron 0.0%
!! AAATAAAAAAAAGTTAAAAG+AGG + chr4.2:3425546-3425565 None:intergenic 10.0%
!! ATAAATTAAAAAACAAATGA+AGG + chr4.2:3424908-3424927 None:intergenic 10.0%
!!! ATAATAATTTTCATCAATAT+TGG + chr4.2:3424596-3424615 None:intergenic 10.0%
!! ATATTATTAATTCAATGACA+AGG + chr4.2:3425628-3425647 None:intergenic 15.0%
!! TATATTTATACATATGTTAG+CGG - chr4.2:3424687-3424706 MS.gene06188:intron 15.0%
!! TCTTATATTCCTTTATATAT+TGG - chr4.2:3424995-3425014 MS.gene06188:CDS 15.0%
!!! ATAATTTTTATTTGTGGTTA+TGG + chr4.2:3425496-3425515 None:intergenic 15.0%
!!! TAATTTTTATTTGTGGTTAT+GGG + chr4.2:3425495-3425514 None:intergenic 15.0%
!!! TATAAAGGAATATAAGATTT+TGG + chr4.2:3424992-3425011 None:intergenic 15.0%
!! AATATAAAGTAAGTCTTACA+TGG - chr4.2:3425462-3425481 MS.gene06188:intron 20.0%
!! AGATATGAAATATTAGAAGT+GGG + chr4.2:3424625-3424644 None:intergenic 20.0%
!! ATAATTACTCTACAGATAAT+TGG - chr4.2:3425831-3425850 MS.gene06188:CDS 20.0%
!! TAGATATGAAATATTAGAAG+TGG + chr4.2:3424626-3424645 None:intergenic 20.0%
!! TATTCCTTTATATATTGGTA+TGG - chr4.2:3425000-3425019 MS.gene06188:CDS 20.0%
!! TCAAAAATACTTTCTTAGAT+TGG - chr4.2:3425308-3425327 MS.gene06188:intron 20.0%
!! TCTTTCAATTCTATTCTTAT+TGG + chr4.2:3424958-3424977 None:intergenic 20.0%
!!! TATCTATCAGATTGTTTTAT+AGG - chr4.2:3424640-3424659 MS.gene06188:CDS 20.0%
! AAATTTGGGTCATAAATTTG+AGG - chr4.2:3425718-3425737 MS.gene06188:CDS 25.0%
! AAGACTTACTTTATATTCAG+TGG + chr4.2:3425459-3425478 None:intergenic 25.0%
! ACATCCATACCAATATATAA+AGG + chr4.2:3425007-3425026 None:intergenic 25.0%
! ATACTTCTAATTTGAGCTAA+GGG - chr4.2:3425065-3425084 MS.gene06188:CDS 25.0%
! ATGATGAATGAGAAAATACT+TGG - chr4.2:3425112-3425131 MS.gene06188:CDS 25.0%
! GCTAATTCAGTAGTAAATTT+GGG - chr4.2:3425704-3425723 MS.gene06188:CDS 25.0%
! TATACTTCTAATTTGAGCTA+AGG - chr4.2:3425064-3425083 MS.gene06188:CDS 25.0%
! TGATGAATGAGAAAATACTT+GGG - chr4.2:3425113-3425132 MS.gene06188:CDS 25.0%
! TGCTAATTCAGTAGTAAATT+TGG - chr4.2:3425703-3425722 MS.gene06188:CDS 25.0%
!! TATATACTGATTGATTGATC+AGG - chr4.2:3425156-3425175 MS.gene06188:CDS 25.0%
!!! ATTTTCTTGCTTTTCTGATT+TGG + chr4.2:3425813-3425832 None:intergenic 25.0%
!!! TAAGAAAGTATTTTTGAGCA+TGG + chr4.2:3425305-3425324 None:intergenic 25.0%
AATATGATATATTTGGCTGC+AGG - chr4.2:3425643-3425662 MS.gene06188:intron 30.0%
ATATACCTTTCTTTCTCTCT+TGG + chr4.2:3424672-3424691 None:intergenic 30.0%
GTAAGATAGGACATAATTGT+AGG - chr4.2:3424404-3424423 MS.gene06188:CDS 30.0%
TATACCTTTCTTTCTCTCTT+GGG + chr4.2:3424671-3424690 None:intergenic 30.0%
! TGCTTCTTCTTGTTTAAAGT+AGG + chr4.2:3425789-3425808 None:intergenic 30.0%
! TTGATTTTGTTCAAGCTTAG+GGG + chr4.2:3425918-3425937 None:intergenic 30.0%
! TTGTTTAAAGTAGGACAAAG+TGG + chr4.2:3425780-3425799 None:intergenic 30.0%
!! GTTGATTTTGTTCAAGCTTA+GGG + chr4.2:3425919-3425938 None:intergenic 30.0%
AAACAAATGAAGGAAGCTGT+TGG + chr4.2:3424898-3424917 None:intergenic 35.0%
AACACCAACACAAAAGAACA+AGG - chr4.2:3425677-3425696 MS.gene06188:CDS 35.0%
ACACCAACACAAAAGAACAA+GGG - chr4.2:3425678-3425697 MS.gene06188:CDS 35.0%
ATACCTTTCTTTCTCTCTTG+GGG + chr4.2:3424670-3424689 None:intergenic 35.0%
ATTTGAGCTAAGGGAGTTAA+TGG - chr4.2:3425074-3425093 MS.gene06188:CDS 35.0%
TACATATGTTAGCGGAAAGA+TGG - chr4.2:3424695-3424714 MS.gene06188:intron 35.0%
TGTGAAGTTGAGATGAATGA+TGG - chr4.2:3425752-3425771 MS.gene06188:CDS 35.0%
! ATACCCTTGTTCTTTTGTGT+TGG + chr4.2:3425684-3425703 None:intergenic 35.0%
! GATCAAGAAAAGCTTTAGCA+TGG - chr4.2:3424513-3424532 MS.gene06188:CDS 35.0%
! GCTAAAGCTTTTCTTGATCA+TGG + chr4.2:3424512-3424531 None:intergenic 35.0%
! TGATGTTGATGAAGAGAATG+AGG + chr4.2:3424569-3424588 None:intergenic 35.0%
!! GGTTGATTTTGTTCAAGCTT+AGG + chr4.2:3425920-3425939 None:intergenic 35.0%
CTAGCTTCTCTAATCCAACA+AGG + chr4.2:3425215-3425234 None:intergenic 40.0%
GATATATTTGGCTGCAGGTT+GGG - chr4.2:3425648-3425667 MS.gene06188:intron 40.0%
GATGAAGAGAATGAGGAAGA+TGG + chr4.2:3424562-3424581 None:intergenic 40.0%
GGATTAGAGAAGCTAGGAAA+AGG - chr4.2:3425219-3425238 MS.gene06188:intron 40.0%
TATTTGTGGTTATGGGCTTG+TGG + chr4.2:3425488-3425507 None:intergenic 40.0%
TGATATATTTGGCTGCAGGT+TGG - chr4.2:3425647-3425666 MS.gene06188:intron 40.0%
TGTTCGCATTGTGGTAAGAT+AGG - chr4.2:3424391-3424410 MS.gene06188:CDS 40.0%
TTGATTGATCAGGAGTTCCA+TGG - chr4.2:3425166-3425185 MS.gene06188:intron 40.0%
! CTTGTTGGATTAGAGAAGCT+AGG - chr4.2:3425213-3425232 MS.gene06188:intron 40.0%
! GAAAGTGTGAGGTCCAAATT+AGG + chr4.2:3425887-3425906 None:intergenic 40.0%
!! AGAAGAAAGTGTTCGCATTG+TGG - chr4.2:3424382-3424401 MS.gene06188:CDS 40.0%
AAAGAGACGAAGTCCTCCAA+GGG + chr4.2:3424449-3424468 None:intergenic 45.0%
AATGAGGAAGATGGAGAGGA+TGG + chr4.2:3424553-3424572 None:intergenic 45.0%
ACGAGGAGGATGATGATAGT+TGG + chr4.2:3424477-3424496 None:intergenic 45.0%
ACGTTCAAGTCTCTTCGACT+TGG - chr4.2:3425350-3425369 MS.gene06188:intron 45.0%
AGAAGCTAGGAAAAGGAGAC+TGG - chr4.2:3425226-3425245 MS.gene06188:intron 45.0%
AGAGAATGAGGAAGATGGAG+AGG + chr4.2:3424557-3424576 None:intergenic 45.0%
GAGCACAGAACATTCCTTGT+TGG - chr4.2:3425198-3425217 MS.gene06188:intron 45.0%
TTGGAGGACTTCGTCTCTTT+GGG - chr4.2:3424449-3424468 MS.gene06188:CDS 45.0%
TTGTGCAGCAGTGCCTAATT+TGG - chr4.2:3425871-3425890 MS.gene06188:CDS 45.0%
! CATGGTACTAGATGATGACG+AGG + chr4.2:3424494-3424513 None:intergenic 45.0%
!! AATTAATAATATGATATATT+TGG - chr4.2:3425636-3425655 MS.gene06188:intron 5.0%
!!! AATTAAATAATTTTTATTTG+TGG + chr4.2:3425502-3425521 None:intergenic 5.0%
AAGAAGGAATGAGCCAGCAG+GGG + chr4.2:3425945-3425964 None:intergenic 50.0%
AAGTCCTCCAAGGGTAGTGA+AGG + chr4.2:3424440-3424459 None:intergenic 50.0%
ACATCCTTCACTACCCTTGG+AGG - chr4.2:3424433-3424452 MS.gene06188:CDS 50.0%
ATGGCTAGCGACTTGTGTAG+GGG + chr4.2:3425286-3425305 None:intergenic 50.0%
CAAAGAGACGAAGTCCTCCA+AGG + chr4.2:3424450-3424469 None:intergenic 50.0%
CAAGAAGGAATGAGCCAGCA+GGG + chr4.2:3425946-3425965 None:intergenic 50.0%
CATGGCTAGCGACTTGTGTA+GGG + chr4.2:3425287-3425306 None:intergenic 50.0%
CCACCCCAAGAGAGAAAGAA+AGG - chr4.2:3424664-3424683 MS.gene06188:CDS 50.0%
CCTTTCTTTCTCTCTTGGGG+TGG + chr4.2:3424667-3424686 None:intergenic 50.0%
CTAGGAAAAGGAGACTGGAG+AGG - chr4.2:3425231-3425250 MS.gene06188:intron 50.0%
CTGTGCTCTTCTTCTGTCCA+TGG + chr4.2:3425186-3425205 None:intergenic 50.0%
CTTGGAGGACTTCGTCTCTT+TGG - chr4.2:3424448-3424467 MS.gene06188:CDS 50.0%
GAAGATGGAGAGGATGGTGA+GGG + chr4.2:3424547-3424566 None:intergenic 50.0%
TGACGCTAATTGGGCCAAGA+AGG + chr4.2:3425961-3425980 None:intergenic 50.0%
TGCACATCCTTCACTACCCT+TGG - chr4.2:3424430-3424449 MS.gene06188:CDS 50.0%
TGGAGGACTTCGTCTCTTTG+GGG - chr4.2:3424450-3424469 MS.gene06188:CDS 50.0%
! GGGATGCAACTGAAAGTGTG+AGG + chr4.2:3425898-3425917 None:intergenic 50.0%
! GGTACTAGATGATGACGAGG+AGG + chr4.2:3424491-3424510 None:intergenic 50.0%
CAAAATCAACCCTCCCCTGC+TGG - chr4.2:3425929-3425948 MS.gene06188:CDS 55.0%
CCAAGAAGGAATGAGCCAGC+AGG + chr4.2:3425947-3425966 None:intergenic 55.0%
GCATGGCTAGCGACTTGTGT+AGG + chr4.2:3425288-3425307 None:intergenic 55.0%
GGAAGATGGAGAGGATGGTG+AGG + chr4.2:3424548-3424567 None:intergenic 55.0%
TGGAGAGGATGGTGAGGGAA+AGG + chr4.2:3424542-3424561 None:intergenic 55.0%
!! CCTGCTGGCTCATTCCTTCT+TGG - chr4.2:3425944-3425963 MS.gene06188:CDS 55.0%
AAGGAATGAGCCAGCAGGGG+AGG + chr4.2:3425942-3425961 None:intergenic 60.0%
AGGAATGAGCCAGCAGGGGA+GGG + chr4.2:3425941-3425960 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 3424376 3425985 3424376 ID=MS.gene06188
chr4.2 mRNA 3424376 3425985 3424376 ID=MS.gene06188.t1;Parent=MS.gene06188
chr4.2 exon 3425676 3425985 3425676 ID=MS.gene06188.t1.exon1;Parent=MS.gene06188.t1
chr4.2 CDS 3425676 3425985 3425676 ID=cds.MS.gene06188.t1;Parent=MS.gene06188.t1
chr4.2 exon 3424990 3425183 3424990 ID=MS.gene06188.t1.exon2;Parent=MS.gene06188.t1
chr4.2 CDS 3424990 3425183 3424990 ID=cds.MS.gene06188.t1;Parent=MS.gene06188.t1
chr4.2 exon 3424376 3424696 3424376 ID=MS.gene06188.t1.exon3;Parent=MS.gene06188.t1
chr4.2 CDS 3424376 3424696 3424376 ID=cds.MS.gene06188.t1;Parent=MS.gene06188.t1
Gene Sequence

>MS.gene06188

ATGGGGAGAAGAAAGTGTTCGCATTGTGGTAAGATAGGACATAATTGTAGGACATGCACATCCTTCACTACCCTTGGAGGACTTCGTCTCTTTGGGGTCCAACTATCATCATCCTCCTCGTCATCATCTAGTACCATGATCAAGAAAAGCTTTAGCATGGACACCTTTCCCTCACCATCCTCTCCATCTTCCTCATTCTCTTCATCAACATCATTAACCAATATTGATGAAAATTATTATCACAAACCCACTTCTAATATTTCATATCTATCAGATTGTTTTATAGGTCCACCCCAAGAGAGAAAGAAAGGTATATTTATACATATGTTAGCGGAAAGATGGTCACTAATTAATGTTGTTTTCGTTTTCTATTAATTTAATGTGTATTTTTTATAGTATTTGTTGTATAGTTCATCAATTCAAAATTAATGAAAAATAAAATATATTTTTTTTTATAAATTTTATTGTTTGTAGTTGAAATGAAACTTCTTTCAAAACTAATTTATCATGTTCAAATTTCCAACAGCTTCCTTCATTTGTTTTTTAATTTATAATTTGTAATATACTAATATGTAACTACCAATAAGAATAGAATTGAAAGAAAAATGCTACACCAAAATCTTATATTCCTTTATATATTGGTATGGATGTATAGTCATGATCAATGTTAAGTAGTTATTCATACATGTATACTTCTAATTTGAGCTAAGGGAGTTAATGGATAAGTGTTTGAATCATGATGAATGAGAAAATACTTGGGATCTCTAGTCTAACATATATTATATACTGATTGATTGATCAGGAGTTCCATGGACAGAAGAAGAGCACAGAACATTCCTTGTTGGATTAGAGAAGCTAGGAAAAGGAGACTGGAGAGGCATCTCTAAAAACTTTGTCACTTCAAGAACCCCTACACAAGTCGCTAGCCATGCTCAAAAATACTTTCTTAGATTGGCTACTATCAACAAGAAGCGACGTTCAAGTCTCTTCGACTTGGTATATACACTATACTATGTTAGACAAATTCAATTCATTCATGATCATCAATTGCTTAATTGTTTAGCTATCTCTTGTCGTTCACCACTGAATATAAAGTAAGTCTTACATGGCCACAAGCCCATAACCACAAATAAAAATTATTTAATTAGTTACATTTCTTAATCTTTTCCTCTTTTAACTTTTTTTTATTTGTGTGTTCAAGTAAGTATTTTTCCTAAATAAATATTTTATTATTTTTATTTTTATGGATCCTTGTCATTGAATTAATAATATGATATATTTGGCTGCAGGTTGGGAGCAAGAACACCAACACAAAAGAACAAGGGTATGCTAATTCAGTAGTAAATTTGGGTCATAAATTTGAGGATAAGTGTAAATGTGAAGTTGAGATGAATGATGGCACCACTTTGTCCTACTTTAAACAAGAAGAAGCAGCCAAATCAGAAAAGCAAGAAAATAATTACTCTACAGATAATTGGCTACATGACTCTTCAAATTGTGCAGCAGTGCCTAATTTGGACCTCACACTTTCAGTTGCATCCCCTAAGCTTGAACAAAATCAACCCTCCCCTGCTGGCTCATTCCTTCTTGGCCCAATTAGCGTCACTTAA
Protein sequence

>MS.gene06188.t1

MGRRKCSHCGKIGHNCRTCTSFTTLGGLRLFGVQLSSSSSSSSSTMIKKSFSMDTFPSPSSPSSSFSSSTSLTNIDENYYHKPTSNISYLSDCFIGPPQERKKGVPWTEEEHRTFLVGLEKLGKGDWRGISKNFVTSRTPTQVASHAQKYFLRLATINKKRRSSLFDLVGSKNTNTKEQGYANSVVNLGHKFEDKCKCEVEMNDGTTLSYFKQEEAAKSEKQENNYSTDNWLHDSSNCAAVPNLDLTLSVASPKLEQNQPSPAGSFLLGPISVT