AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062048

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062048.t1 MTR_2g045670 82.014 139 17 3 19 151 128 264 5.89e-67 206
MS.gene062048.t1 MTR_2g045700 77.372 137 23 3 21 151 120 254 2.72e-56 179
MS.gene062048.t1 MTR_1g034500 71.223 139 33 2 19 151 153 290 2.12e-53 172
MS.gene062048.t1 MTR_2g045630 67.105 152 25 5 19 151 116 261 1.68e-51 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 26 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGACTGGCACAGAATTT+AGG 0.199471 2.3:-44690963 MS.gene062048:CDS
CAACTTCAATTCCAAGTTAT+AGG 0.241863 2.3:-44691253 MS.gene062048:CDS
CTTCTTGCAAGTATTTGATA+TGG 0.313389 2.3:-44688276 MS.gene062048:CDS
CTGGACTGGCACAGAATTTA+GGG 0.316281 2.3:-44690962 MS.gene062048:CDS
GCTCAGTGAGCGTTTGTGTT+AGG 0.338250 2.3:+44690002 None:intergenic
TCAAAAGATAAACACTCTTA+AGG 0.430729 2.3:-44690038 MS.gene062048:CDS
AAGCCGCCTTGACAATTAAC+GGG 0.437244 2.3:-44688416 MS.gene062048:CDS
AAGATCAAAGATAAAGAAAC+AGG 0.437513 2.3:-44690391 MS.gene062048:intron
TTTGTTGTAGAAAATCCATC+TGG 0.453963 2.3:-44690981 MS.gene062048:intron
CTATAACTTGGAATTGAAGT+TGG 0.464630 2.3:+44691254 None:intergenic
CTTTATGTTAGCAGTGCAGC+AGG 0.473512 2.3:-44691221 MS.gene062048:CDS
CAAGCCGCCTTGACAATTAA+CGG 0.477322 2.3:-44688417 MS.gene062048:CDS
TTGCAAGTATTTGATATGGA+AGG 0.495147 2.3:-44688272 MS.gene062048:CDS
AGAACGCAGAACCTATAACT+TGG 0.526918 2.3:+44691242 None:intergenic
AATTGAAGTTGGTGATTCCA+TGG 0.534353 2.3:+44691265 None:intergenic
AAATTCTGTGCCAGTCCAGA+TGG 0.537974 2.3:+44690966 None:intergenic
CAATGAAAACGATTCTATTG+AGG 0.546332 2.3:-44689954 MS.gene062048:intron
GTCTATCAGATGAGTTTGCT+AGG 0.547175 2.3:-44688456 MS.gene062048:intron
GGAAGCAAGAGATCGACAGA+TGG 0.554192 2.3:-44691197 MS.gene062048:CDS
TCGAAGCAGATTACTGAGGA+TGG 0.562030 2.3:-44691143 MS.gene062048:intron
TGTAGAAAATCCATCTGGAC+TGG 0.593923 2.3:-44690976 MS.gene062048:intron
GAATTTAGGGACAGTCGTCA+AGG 0.617946 2.3:-44690949 MS.gene062048:CDS
TTCCCCGTTAATTGTCAAGG+CGG 0.629086 2.3:+44688413 None:intergenic
TATGTTAGCAGTGCAGCAGG+TGG 0.639981 2.3:-44691218 MS.gene062048:CDS
TTTATCGAAGCAGATTACTG+AGG 0.687115 2.3:-44691147 MS.gene062048:CDS
AGCCGCCTTGACAATTAACG+GGG 0.718383 2.3:-44688415 MS.gene062048:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAAAAAAATCAAAGT+AGG + chr2.3:44689376-44689395 None:intergenic 10.0%
!! TAATTAAAAAAATCAAAGTA+GGG + chr2.3:44689375-44689394 None:intergenic 10.0%
!! TTTATGAAACTTTAATAAAT+AGG - chr2.3:44690349-44690368 MS.gene062048:intron 10.0%
!!! GATAAGATATTTTTTTTTTT+TGG + chr2.3:44690139-44690158 None:intergenic 10.0%
!!! TTTTAAATCATAATAAAACA+TGG + chr2.3:44688457-44688476 None:intergenic 10.0%
!! AAATGTAAAAAGAAAAAATG+TGG - chr2.3:44689319-44689338 MS.gene062048:intron 15.0%
!! AATGTAAAAAGAAAAAATGT+GGG - chr2.3:44689320-44689339 MS.gene062048:intron 15.0%
!! ATAAAATTGAACAAATAAGA+AGG + chr2.3:44689619-44689638 None:intergenic 15.0%
!! ATTATTGTTCAATTAGAAAA+AGG - chr2.3:44689680-44689699 MS.gene062048:intron 15.0%
!! TAAAATTGAACAAATAAGAA+GGG + chr2.3:44689618-44689637 None:intergenic 15.0%
!! TTGATATCTATATTACTAAA+AGG - chr2.3:44690166-44690185 MS.gene062048:intron 15.0%
!! TTTGTTTATAAATTCTACTA+CGG + chr2.3:44688769-44688788 None:intergenic 15.0%
!!! ATGTTTGAAATTTTCTATTA+TGG + chr2.3:44690749-44690768 None:intergenic 15.0%
!!! GGTTTTTTTTTTTTTTGAAT+CGG - chr2.3:44689180-44689199 MS.gene062048:intron 15.0%
!!! TGGTAAAATTTTAACATAAA+AGG + chr2.3:44688967-44688986 None:intergenic 15.0%
!!! TTTTATTTTTTAAGGAAGTT+TGG + chr2.3:44690797-44690816 None:intergenic 15.0%
!! AATATTGATATATTGTCATG+TGG - chr2.3:44690453-44690472 MS.gene062048:intron 20.0%
!! ACATGACAATATATCAATAT+TGG + chr2.3:44690454-44690473 None:intergenic 20.0%
!! AGGGAAAAAAAAAACTATTT+GGG + chr2.3:44689356-44689375 None:intergenic 20.0%
!! ATAAATAGGATTGAAATCTA+AGG - chr2.3:44690363-44690382 MS.gene062048:intron 20.0%
!! ATGTAAAAAGAAAAAATGTG+GGG - chr2.3:44689321-44689340 MS.gene062048:intron 20.0%
!! GAATATGATTATAACTATAG+TGG + chr2.3:44688832-44688851 None:intergenic 20.0%
!! TAAATAGGATTGAAATCTAA+GGG - chr2.3:44690364-44690383 MS.gene062048:intron 20.0%
!! TAGGGAAAAAAAAAACTATT+TGG + chr2.3:44689357-44689376 None:intergenic 20.0%
!! TGATGCTAAACTAAAAAATA+TGG - chr2.3:44688632-44688651 MS.gene062048:intron 20.0%
!!! ATAATTTTTTTTATTTGGGC+TGG - chr2.3:44689987-44690006 MS.gene062048:CDS 20.0%
!!! ATACCTTTAAAAGATTGAAT+AGG + chr2.3:44690726-44690745 None:intergenic 20.0%
!!! ATTCCTATTCAATCTTTTAA+AGG - chr2.3:44690720-44690739 MS.gene062048:intron 20.0%
!!! TAATATTTTTCCCTTTTCTA+GGG + chr2.3:44690898-44690917 None:intergenic 20.0%
!!! TACTAATTTAAAGTGTGATT+TGG - chr2.3:44689792-44689811 MS.gene062048:intron 20.0%
! AAAATGCTAGATATCAAGAA+TGG + chr2.3:44690431-44690450 None:intergenic 25.0%
! AAAGTCACAATTGAATAGAA+AGG + chr2.3:44691194-44691213 None:intergenic 25.0%
! AAATAAGAAGGGAAGTTAAA+AGG + chr2.3:44689607-44689626 None:intergenic 25.0%
! AAGAAAGTTGGATTGATAAA+TGG + chr2.3:44688990-44689009 None:intergenic 25.0%
! AAGATCAAAGATAAAGAAAC+AGG - chr2.3:44689139-44689158 MS.gene062048:intron 25.0%
! ACAAATATCAGAAAACAAGA+TGG + chr2.3:44689706-44689725 None:intergenic 25.0%
! ATAAATTCTACTACGGTATA+GGG + chr2.3:44688762-44688781 None:intergenic 25.0%
! ATTGATTAACAACTTAAAGC+AGG + chr2.3:44690027-44690046 None:intergenic 25.0%
! CAAAAGAAATGCAACTAAAT+AGG + chr2.3:44689059-44689078 None:intergenic 25.0%
! CTTTAAATTAGTAGCAATGT+TGG + chr2.3:44689785-44689804 None:intergenic 25.0%
! TATAAATTCTACTACGGTAT+AGG + chr2.3:44688763-44688782 None:intergenic 25.0%
! TCAAAAGATAAACACTCTTA+AGG - chr2.3:44689492-44689511 MS.gene062048:intron 25.0%
! TTGATTAACAACTTAAAGCA+GGG + chr2.3:44690026-44690045 None:intergenic 25.0%
!! AAAAGTGGTAATAATTTGCA+TGG - chr2.3:44690572-44690591 MS.gene062048:intron 25.0%
!! CTAATATTTTTCCCTTTTCT+AGG + chr2.3:44690899-44690918 None:intergenic 25.0%
!! TTCTTTTGCATGAAAAAAAG+TGG - chr2.3:44690557-44690576 MS.gene062048:intron 25.0%
!! TTTATCTTTGATCTTTTAGC+TGG + chr2.3:44689134-44689153 None:intergenic 25.0%
!!! ATGATATGCTTAGCTTTTTT+TGG - chr2.3:44688806-44688825 MS.gene062048:intron 25.0%
!!! TCCTATCATAAACTTTTTCT+TGG + chr2.3:44689911-44689930 None:intergenic 25.0%
!!! TCCTATTTTAAACTGTTTCT+TGG + chr2.3:44689952-44689971 None:intergenic 25.0%
AAAAACACCTCAGAAAACAA+AGG - chr2.3:44691031-44691050 MS.gene062048:intron 30.0%
AAAGTTGGATTGATAAATGG+TGG + chr2.3:44688987-44689006 None:intergenic 30.0%
AGTGACCTTATCTATGTATA+TGG + chr2.3:44688679-44688698 None:intergenic 30.0%
ATAAAAGGCTCATATATGAC+AGG + chr2.3:44688952-44688971 None:intergenic 30.0%
ATATTGTCATGTGGTGATAA+GGG - chr2.3:44690462-44690481 MS.gene062048:intron 30.0%
ATTGTGACTTTCTATCCTTT+AGG - chr2.3:44691203-44691222 MS.gene062048:CDS 30.0%
CAACTTCAATTCCAAGTTAT+AGG - chr2.3:44688277-44688296 MS.gene062048:CDS 30.0%
CAATGAAAACGATTCTATTG+AGG - chr2.3:44689576-44689595 MS.gene062048:intron 30.0%
CTATAACTTGGAATTGAAGT+TGG + chr2.3:44688279-44688298 None:intergenic 30.0%
CTCTCAAACAAATATGTGAT+AGG - chr2.3:44688709-44688728 MS.gene062048:intron 30.0%
CTTAGCAACATTAAGAAAGT+TGG + chr2.3:44689002-44689021 None:intergenic 30.0%
CTTCTTGCAAGTATTTGATA+TGG - chr2.3:44691254-44691273 MS.gene062048:CDS 30.0%
GAAATGCAACTAAATAGGTT+AGG + chr2.3:44689054-44689073 None:intergenic 30.0%
GATGTCCATATACATAGATA+AGG - chr2.3:44688671-44688690 MS.gene062048:intron 30.0%
GCCAAGAAAAAGTTTATGAT+AGG - chr2.3:44689907-44689926 MS.gene062048:intron 30.0%
TAAAATGCAGTTCATGTGTT+TGG + chr2.3:44688504-44688523 None:intergenic 30.0%
TACTGAGGATGGTAAAATTA+TGG - chr2.3:44688398-44688417 MS.gene062048:intron 30.0%
TATATTGTCATGTGGTGATA+AGG - chr2.3:44690461-44690480 MS.gene062048:intron 30.0%
TGATGAATTCAAGAATGACA+TGG + chr2.3:44690401-44690420 None:intergenic 30.0%
TGGACGAAATAAGATACAAA+TGG - chr2.3:44689242-44689261 MS.gene062048:intron 30.0%
TTGCAAGTATTTGATATGGA+AGG - chr2.3:44691258-44691277 MS.gene062048:CDS 30.0%
TTGTGACTTTCTATCCTTTA+GGG - chr2.3:44691204-44691223 MS.gene062048:CDS 30.0%
! AATAGATCTGCAATTGATTC+TGG + chr2.3:44689853-44689872 None:intergenic 30.0%
! ACAAGTTGAAAAACTAACAC+AGG + chr2.3:44688854-44688873 None:intergenic 30.0%
! CAATTGTATTTTTCCCAACA+AGG + chr2.3:44690640-44690659 None:intergenic 30.0%
! CTCAATAGAATCGTTTTCAT+TGG + chr2.3:44689578-44689597 None:intergenic 30.0%
! GCCAAGAAACAGTTTAAAAT+AGG - chr2.3:44689948-44689967 MS.gene062048:intron 30.0%
! TAGATAAGGTCACTTTAACA+TGG - chr2.3:44688685-44688704 MS.gene062048:intron 30.0%
! TTAGTTGCATTTCTTTTGAC+AGG - chr2.3:44689061-44689080 MS.gene062048:intron 30.0%
! TTTGTTGTAGAAAATCCATC+TGG - chr2.3:44688549-44688568 MS.gene062048:intron 30.0%
!! CTGCAAGTTTGTTGAAATTA+GGG + chr2.3:44690617-44690636 None:intergenic 30.0%
!! TGCAAGTTTGTTGAAATTAG+GGG + chr2.3:44690616-44690635 None:intergenic 30.0%
!! TTTAAAGTGTGATTTGGTTG+TGG - chr2.3:44689798-44689817 MS.gene062048:intron 30.0%
!!! ACTATTTCCTTTGTTTTCTG+AGG + chr2.3:44691041-44691060 None:intergenic 30.0%
AAAGAAAAAGACTGTCGAAC+AGG - chr2.3:44689105-44689124 MS.gene062048:intron 35.0%
ACAAAGGAAATAGTGAGTTG+TGG - chr2.3:44691047-44691066 MS.gene062048:intron 35.0%
AGCAAATGAGTTTACCCTAA+AGG + chr2.3:44691221-44691240 None:intergenic 35.0%
ATGGTTATCGTGCAGTATTT+AGG + chr2.3:44690969-44690988 None:intergenic 35.0%
CAAAGGAAATAGTGAGTTGT+GGG - chr2.3:44691048-44691067 MS.gene062048:intron 35.0%
GAGTGTGTGCTTATATTTAG+TGG + chr2.3:44690692-44690711 None:intergenic 35.0%
GTGCTTATATTTAGTGGTCT+TGG + chr2.3:44690686-44690705 None:intergenic 35.0%
TACCTTCAAACCCTAGAAAA+GGG - chr2.3:44690885-44690904 MS.gene062048:intron 35.0%
TGGTTATCGTGCAGTATTTA+GGG + chr2.3:44690968-44690987 None:intergenic 35.0%
TTACCTTCAAACCCTAGAAA+AGG - chr2.3:44690884-44690903 MS.gene062048:intron 35.0%
TTTATCGAAGCAGATTACTG+AGG - chr2.3:44688383-44688402 MS.gene062048:intron 35.0%
! AAAGTTTCAAGTAGGCTTCA+TGG + chr2.3:44689877-44689896 None:intergenic 35.0%
! AGCCTACTTGAAACTTTTTG+TGG - chr2.3:44689880-44689899 MS.gene062048:intron 35.0%
! CACATGAACTGCATTTTATG+TGG - chr2.3:44688506-44688525 MS.gene062048:intron 35.0%
! CACCACAAAAAGTTTCAAGT+AGG + chr2.3:44689885-44689904 None:intergenic 35.0%
! CACCAGAATAGTTTTTGATG+AGG + chr2.3:44690536-44690555 None:intergenic 35.0%
! CTACTTGAAACTTTTTGTGG+TGG - chr2.3:44689883-44689902 MS.gene062048:intron 35.0%
! GTTTGTTGAAATTAGGGGAA+AGG + chr2.3:44690611-44690630 None:intergenic 35.0%
! TAAGAGCTAGTTAGGTTGTA+TGG - chr2.3:44689826-44689845 MS.gene062048:intron 35.0%
! TAGGCAGTGTTGTTAAATAG+CGG - chr2.3:44688728-44688747 MS.gene062048:intron 35.0%
! TGGTAATAATTTGCATGGTG+AGG - chr2.3:44690577-44690596 MS.gene062048:intron 35.0%
!! AACCAAAGCATTGTTGGTTA+TGG + chr2.3:44689288-44689307 None:intergenic 35.0%
!! ATATGCAACCAAAGCATTGT+TGG + chr2.3:44689294-44689313 None:intergenic 35.0%
!! GCTGCAAGTTTGTTGAAATT+AGG + chr2.3:44690618-44690637 None:intergenic 35.0%
!! TAACTCGCTATAACTTGCTT+AGG + chr2.3:44690945-44690964 None:intergenic 35.0%
!! TAACTTGCTTAGGTAAGCAA+AGG + chr2.3:44690935-44690954 None:intergenic 35.0%
AACGGGGAAAAGTTAGTTGT+GGG - chr2.3:44691131-44691150 MS.gene062048:intron 40.0%
AGAACGCAGAACCTATAACT+TGG + chr2.3:44688291-44688310 None:intergenic 40.0%
AGGTACATACGACAATGCTT+TGG - chr2.3:44689159-44689178 MS.gene062048:intron 40.0%
CACCATAACCAACAATGCTT+TGG - chr2.3:44689283-44689302 MS.gene062048:intron 40.0%
CTTGGATTCACTCTTGAACA+GGG + chr2.3:44690668-44690687 None:intergenic 40.0%
GGCCTCATCAAAAACTATTC+TGG - chr2.3:44690531-44690550 MS.gene062048:intron 40.0%
TAACGGGGAAAAGTTAGTTG+TGG - chr2.3:44691130-44691149 MS.gene062048:intron 40.0%
TATGGTGTACCGTCTATATG+CGG + chr2.3:44689270-44689289 None:intergenic 40.0%
TCTTGGATTCACTCTTGAAC+AGG + chr2.3:44690669-44690688 None:intergenic 40.0%
TGGAACAGTAAGAGCTAGTT+AGG - chr2.3:44689818-44689837 MS.gene062048:intron 40.0%
TGTAGAAAATCCATCTGGAC+TGG - chr2.3:44688554-44688573 MS.gene062048:intron 40.0%
TTACTACAGTGCTCATCTCT+TGG - chr2.3:44690836-44690855 MS.gene062048:intron 40.0%
! CTTTTCCCCGTTAATTGTCA+AGG + chr2.3:44691123-44691142 None:intergenic 40.0%
! GATGAGCACTGTAGTAAGTT+TGG + chr2.3:44690833-44690852 None:intergenic 40.0%
! GTCTATCAGATGAGTTTGCT+AGG - chr2.3:44691074-44691093 MS.gene062048:intron 40.0%
! GTTGCATTTCTTTTGACAGG+AGG - chr2.3:44689064-44689083 MS.gene062048:intron 40.0%
!! AACAAACTTGCAGCCTTGTT+GGG - chr2.3:44690624-44690643 MS.gene062048:intron 40.0%
!!! TTCCCTTTTCTAGGGTTTGA+AGG + chr2.3:44690890-44690909 None:intergenic 40.0%
AAATTCTGTGCCAGTCCAGA+TGG + chr2.3:44688567-44688586 None:intergenic 45.0%
AAGCCGCCTTGACAATTAAC+GGG - chr2.3:44691114-44691133 MS.gene062048:intron 45.0%
CAAGCCGCCTTGACAATTAA+CGG - chr2.3:44691113-44691132 MS.gene062048:intron 45.0%
CTTTATGTTAGCAGTGCAGC+AGG - chr2.3:44688309-44688328 MS.gene062048:intron 45.0%
GAATTTAGGGACAGTCGTCA+AGG - chr2.3:44688581-44688600 MS.gene062048:intron 45.0%
GCCTGGCTGACATTAATTTC+GGG + chr2.3:44690293-44690312 None:intergenic 45.0%
GGCCTGGCTGACATTAATTT+CGG + chr2.3:44690294-44690313 None:intergenic 45.0%
TACCTTTGTGCTTTGACTGC+AGG - chr2.3:44690510-44690529 MS.gene062048:intron 45.0%
TCCATACCTTGCATCTTGCA+GGG + chr2.3:44689226-44689245 None:intergenic 45.0%
TCCCGAAATTAATGTCAGCC+AGG - chr2.3:44690289-44690308 MS.gene062048:intron 45.0%
TCGAAGCAGATTACTGAGGA+TGG - chr2.3:44688387-44688406 MS.gene062048:intron 45.0%
TGGCTAACAGTCTTGCATCT+TGG - chr2.3:44688526-44688545 MS.gene062048:intron 45.0%
TTCCCCGTTAATTGTCAAGG+CGG + chr2.3:44691120-44691139 None:intergenic 45.0%
! CAACAAACTTGCAGCCTTGT+TGG - chr2.3:44690623-44690642 MS.gene062048:intron 45.0%
!! CAAATGGTGCCGCATATAGA+CGG - chr2.3:44689258-44689277 MS.gene062048:intron 45.0%
!! CTGGACTGGCACAGAATTTA+GGG - chr2.3:44688568-44688587 MS.gene062048:intron 45.0%
!! TCTGGACTGGCACAGAATTT+AGG - chr2.3:44688567-44688586 MS.gene062048:intron 45.0%
!!! AATGTATAATTTTTTTTATT+TGG - chr2.3:44689982-44690001 MS.gene062048:CDS 5.0%
!!! ATGTATAATTTTTTTTATTT+GGG - chr2.3:44689983-44690002 MS.gene062048:CDS 5.0%
!!! TATTGTTTTTTTTAAATTTA+TGG + chr2.3:44690988-44691007 None:intergenic 5.0%
!!! TTTTTTACTTTTATTTTTTA+AGG + chr2.3:44690805-44690824 None:intergenic 5.0%
AGCCGCCTTGACAATTAACG+GGG - chr2.3:44691115-44691134 MS.gene062048:intron 50.0%
GCTCAGTGAGCGTTTGTGTT+AGG + chr2.3:44689531-44689550 None:intergenic 50.0%
GGAAGCAAGAGATCGACAGA+TGG - chr2.3:44688333-44688352 MS.gene062048:intron 50.0%
GTCCATACCTTGCATCTTGC+AGG + chr2.3:44689227-44689246 None:intergenic 50.0%
TACCTTGCATCTTGCAGGGA+TGG + chr2.3:44689222-44689241 None:intergenic 50.0%
TATGTTAGCAGTGCAGCAGG+TGG - chr2.3:44688312-44688331 MS.gene062048:intron 50.0%
TCAGCCAGGCCGAAAATCAT+GGG - chr2.3:44690303-44690322 MS.gene062048:intron 50.0%
TCCCTGCAAGATGCAAGGTA+TGG - chr2.3:44689222-44689241 MS.gene062048:intron 50.0%
! ACCCACCACCCCATGATTTT+CGG + chr2.3:44690315-44690334 None:intergenic 50.0%
CAGCCAGGCCGAAAATCATG+GGG - chr2.3:44690304-44690323 MS.gene062048:intron 55.0%
GCCGAAAATCATGGGGTGGT+GGG - chr2.3:44690311-44690330 MS.gene062048:intron 55.0%
GGCCTGCAGTCAAAGCACAA+AGG + chr2.3:44690515-44690534 None:intergenic 55.0%
GTCAGCCAGGCCGAAAATCA+TGG - chr2.3:44690302-44690321 MS.gene062048:intron 55.0%
CCAGGCCGAAAATCATGGGG+TGG - chr2.3:44690307-44690326 MS.gene062048:intron 60.0%
CGCCATCCCTGCAAGATGCA+AGG - chr2.3:44689217-44689236 MS.gene062048:intron 60.0%
GGCCGAAAATCATGGGGTGG+TGG - chr2.3:44690310-44690329 MS.gene062048:intron 60.0%
! CCACCCCATGATTTTCGGCC+TGG + chr2.3:44690310-44690329 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 44688267 44691285 44688267 ID=MS.gene062048
chr2.3 mRNA 44688267 44691285 44688267 ID=MS.gene062048.t1;Parent=MS.gene062048
chr2.3 exon 44691144 44691285 44691144 ID=MS.gene062048.t1.exon1;Parent=MS.gene062048.t1
chr2.3 CDS 44691144 44691285 44691144 ID=cds.MS.gene062048.t1;Parent=MS.gene062048.t1
chr2.3 exon 44690899 44690993 44690899 ID=MS.gene062048.t1.exon2;Parent=MS.gene062048.t1
chr2.3 CDS 44690899 44690993 44690899 ID=cds.MS.gene062048.t1;Parent=MS.gene062048.t1
chr2.3 exon 44690392 44690469 44690392 ID=MS.gene062048.t1.exon3;Parent=MS.gene062048.t1
chr2.3 CDS 44690392 44690469 44690392 ID=cds.MS.gene062048.t1;Parent=MS.gene062048.t1
chr2.3 exon 44689955 44690080 44689955 ID=MS.gene062048.t1.exon4;Parent=MS.gene062048.t1
chr2.3 CDS 44689955 44690080 44689955 ID=cds.MS.gene062048.t1;Parent=MS.gene062048.t1
chr2.3 exon 44688411 44688469 44688411 ID=MS.gene062048.t1.exon5;Parent=MS.gene062048.t1
chr2.3 CDS 44688411 44688469 44688411 ID=cds.MS.gene062048.t1;Parent=MS.gene062048.t1
chr2.3 exon 44688267 44688327 44688267 ID=MS.gene062048.t1.exon6;Parent=MS.gene062048.t1
chr2.3 CDS 44688267 44688327 44688267 ID=cds.MS.gene062048.t1;Parent=MS.gene062048.t1
Gene Sequence

>MS.gene062048

ATGGAATCACCAACTTCAATTCCAAGTTATAGGTTCTGCGTTCTTTATGTTAGCAGTGCAGCAGGTGGAAGCAAGAGATCGACAGATGGAGATCAAGATGACAGTAACAAAGTATCTTTATCGAAGCAGATTACTGAGGATGGTAAAATTATGGATATTTCTTTTGCTATCTGCTTATAATAAAATGCCATGTTTTATTATGATTTAAAATTTGAATGTTAAGAATGACTAGTACCAAACACATGAACTGCATTTTATGTGGCTAACAGTCTTGCATCTTGGTTTGTTGTAGAAAATCCATCTGGACTGGCACAGAATTTAGGGACAGTCGTCAAGGAATCTGACACTGATGTTGACGTTGATGTTGATGCTAAACTAAAAAATATGGTATTATAATGTTTTATGATGTCCATATACATAGATAAGGTCACTTTAACATGGTCTCTCAAACAAATATGTGATAGGCAGTGTTGTTAAATAGCGGCGCTGTAGCCCTATACCGTAGTAGAATTTATAAACAAATCGCTATTGTTTGTGATATGATATGCTTAGCTTTTTTTGGCCACTATAGTTATAATCATATTCCTGTGTTAGTTTTTCAACTTGTAAGAACATAAATTTTCAACTTGTCTAAATTATTTCTTTTGTTTTAGTTTGCATAATTTTCTTTCTACGCTTCATTCCTGTCATATATGAGCCTTTTATGTTAAAATTTTACCACCATTTATCAATCCAACTTTCTTAATGTTGCTAAGTTTAGTTGCATTTCTTGCACAATGTCTAGCCTAACCTATTTAGTTGCATTTCTTTTGACAGGAGGATGATGAAAGAAGAAAAGAAAGAAAAAGACTGTCGAACAGGAAACCAGCTAAAAGATCAAAGATAAAGAAACAGGTACATACGACAATGCTTTGGTTTTTTTTTTTTTTGAATCGGCAAATATTATTAAACGCCATCCCTGCAAGATGCAAGGTATGGACGAAATAAGATACAAATGGTGCCGCATATAGACGGTACACCATAACCAACAATGCTTTGGTTGCATATGATTAAAATGTAAAAAGAAAAAATGTGGGGTTCTTCTGTCCCAAATAGTTTTTTTTTTCCCTACTTTGATTTTTTTAATTATTAAATGTTAAGATGATCTGACTATCTAACTTCTGATGTGTTTGTTCGACGATGATCTATTTAACTTGTTTGTTCAGAAAGAATATGAAGAGCAATGTCAAAAGATAAACACTCTTAAGGTTGAAAATTCTGTCCTAACACAAACGCTCACTGAGCTTTCAGAGAAATGTCTCGAGCTCACCAATGAAAACGATTCTATTGAGGTCAATCCTTTTAACTTCCCTTCTTATTTGTTCAATTTTATATCATTTATTAAACTAAGATACTTGTTTGATTTGAGAAAATATTATTGTTCAATTAGAAAAAGGCCATCTTGTTTTCTGATATTTGTATGAGAAACAATAACTAATTGTGAGTATTGTATTGTAGTTCTCAATGCTCTATTTTCCAACATTGCTACTAATTTAAAGTGTGATTTGGTTGTGGAACAGTAAGAGCTAGTTAGGTTGTATGGACCAGAATCAATTGCAGATCTATTGCCATGAAGCCTACTTGAAACTTTTTGTGGTGGAGCCAAGAAAAAGTTTATGATAGGAAGCGTATCAGAATTAAAGCCAAGAAACAGTTTAAAATAGGAAGCATATCAGAATGTATAATTTTTTTTATTTGGGCTGGACTTGAATTTTGACCCTGCTTTAAGTTGTTAATCAATATTAAACATTTAAGATAATGCAGTTTTTTTAGAGATTTTAAAAATTTATACAGTTCTAGAGATATATCTTAATATCTTATACAAAGTAACCAAAAAAAAAAAATATCTTATCACAAAAATTGATATCTATATTACTAAAAGGTAAGTAAATCTATCTTTGTGAGCATGTCATATTACATATCTCTGCTAACAAATATTGATGAGCAACGCTATATATCAAGAAAGATTTTATCAAGAAATTGTCCCGAAATTAATGTCAGCCAGGCCGAAAATCATGGGGTGGTGGGTGATATGTATTTTCTTTTATGAAACTTTAATAAATAGGATTGAAATCTAAGGGTGATAATTCTGCCATGTCATTCTTGAATTCATCAAGAAAAACCATTCTTGATATCTAGCATTTTCCAATATTGATATATTGTCATGTGGTGATAAGGGAAACATGTAGAAATGATTTCAATAGTACCTTTGTGCTTTGACTGCAGGCCTCATCAAAAACTATTCTGGTGTTTCTTTTGCATGAAAAAAAGTGGTAATAATTTGCATGGTGAGGCAATAATTCCTTTCCCCTAATTTCAACAAACTTGCAGCCTTGTTGGGAAAAATACAATTGAAGATCCCTGTTCAAGAGTGAATCCAAGACCACTAAATATAAGCACACACTCTCTTCTACATTCCTATTCAATCTTTTAAAGGTATCCATAATAGAAAATTTCAAACATTATTTAGCACTCAATAAGAATTATTCCAAACTTCCTTAAAAAATAAAAGTAAAAAATTATTCCAAACTTACTACAGTGCTCATCTCTTGGAACAGACAAGTGTGAGCTGCTTCTATTACCTTCAAACCCTAGAAAAGGGAAAAATATTAGACATGAACGATTTCCTTTGCTTACCTAAGCAAGTTATAGCGAGTTACCCTAAATACTGCACGATAACCATAAATTTAAAAAAAACAATAGACAATAAAAATAAAATAAAATAAAAAACACCTCAGAAAACAAAGGAAATAGTGAGTTGTGGGTGTGTCTATCAGATGAGTTTGCTAGGTTCTCAAGCTGATAAGCAAGCCGCCTTGACAATTAACGGGGAAAAGTTAGTTGTGGGCGTGTCTATCAGATTGATAACATTAATTTGCGATAGTCCTTTCTATTCAATTGTGACTTTCTATCCTTTAGGGTAAACTCATTTGCTTCAGATGTCTTCTCTTCTTGCAAGTATTTGATATGGAAGGATTAA
Protein sequence

>MS.gene062048.t1

MESPTSIPSYRFCVLYVSSAAGGSKRSTDGDQDDSNKVSLSKQITEDENPSGLAQNLGTVVKESDTDVDVDVDAKLKNMEDDERRKERKRLSNRKPAKRSKIKKQKEYEEQCQKINTLKVENSVLTQTLTELSEKCLELTNENDSIEMSLLGSQADKQAALTINGEKVNSFASDVFSSCKYLIWKD