Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062072.t1 | XP_024632337.1 | 91.6 | 514 | 37 | 3 | 1 | 512 | 148 | 657 | 2.40E-272 | 947.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062072.t1 | Q3ECY6 | 37.6 | 490 | 235 | 11 | 12 | 498 | 134 | 555 | 7.8e-78 | 292.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062072.t1 | G7IQD7 | 91.5 | 515 | 37 | 4 | 1 | 512 | 148 | 658 | 3.3e-271 | 943.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene062072.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062072.t1 | MTR_2g045070 | 91.456 | 515 | 37 | 4 | 1 | 512 | 148 | 658 | 0.0 | 958 |
MS.gene062072.t1 | MTR_3g062560 | 86.458 | 96 | 11 | 1 | 1 | 96 | 100 | 193 | 5.78e-51 | 173 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062072.t1 | AT1G43245 | 37.298 | 496 | 232 | 12 | 12 | 500 | 134 | 557 | 5.51e-93 | 294 |
MS.gene062072.t1 | AT1G43245 | 38.717 | 421 | 206 | 10 | 12 | 426 | 134 | 508 | 2.35e-83 | 269 |
Find 79 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATACTCCTCACAATCAATTT+TGG | 0.137975 | 2.3:+45224286 | None:intergenic |
CTTAACATATGGAGGTTTAT+TGG | 0.183713 | 2.3:-45221561 | MS.gene062072:CDS |
CAACGACGGTGCAGCGATTC+TGG | 0.215687 | 2.3:-45225685 | MS.gene062072:CDS |
GTCTCTGAAGAACTTGTAAT+TGG | 0.243344 | 2.3:+45222414 | None:intergenic |
TATCAGAGTAGAAGAAGAAT+TGG | 0.275455 | 2.3:+45225509 | None:intergenic |
TTTAGAGCCTGTATGTTAAA+TGG | 0.281071 | 2.3:-45221875 | MS.gene062072:CDS |
ATGCTGTAAGTGGTCATTAA+TGG | 0.283977 | 2.3:-45221903 | MS.gene062072:CDS |
CGTGCTGGTGATTTATTATC+TGG | 0.288132 | 2.3:-45222175 | MS.gene062072:CDS |
CCATTCCCATTTGGTTTCTC+AGG | 0.299180 | 2.3:-45221519 | MS.gene062072:CDS |
CTTACTCCATCCTGAACTTC+TGG | 0.315654 | 2.3:+45221979 | None:intergenic |
GAATGGAGCTATGCGAAGTT+TGG | 0.333038 | 2.3:+45225476 | None:intergenic |
TAAGTTTCTTAATGTTGATT+TGG | 0.342753 | 2.3:-45221960 | MS.gene062072:CDS |
TTAACTCTTACCAGAAGTTC+AGG | 0.346116 | 2.3:-45221989 | MS.gene062072:CDS |
TTATTGGCTTATATATGTTA+TGG | 0.352031 | 2.3:-45221545 | MS.gene062072:CDS |
TGCAAGGACCCTATCAATTT+CGG | 0.353888 | 2.3:-45221737 | MS.gene062072:CDS |
ATTACCCAGCCGAAATTGAT+AGG | 0.361279 | 2.3:+45221728 | None:intergenic |
CGGGCTCATGATATCAAAAC+TGG | 0.384552 | 2.3:-45221680 | MS.gene062072:CDS |
TTATGGTCCCCATTCCCATT+TGG | 0.394634 | 2.3:-45221528 | MS.gene062072:CDS |
CAGACATAACTCGTAATGTT+TGG | 0.409849 | 2.3:-45221796 | MS.gene062072:CDS |
TTTGAACCTGAGAAACCAAA+TGG | 0.430256 | 2.3:+45221513 | None:intergenic |
GAGAATCGGTAGCAAGCATT+AGG | 0.435038 | 2.3:+45225537 | None:intergenic |
CTGAGAAACCAAATGGGAAT+GGG | 0.436237 | 2.3:+45221520 | None:intergenic |
CATGAATCTGTGAATAGAAC+TGG | 0.437992 | 2.3:-45221644 | MS.gene062072:CDS |
GGTGTACATTGCTTAACATA+TGG | 0.441977 | 2.3:-45221572 | MS.gene062072:CDS |
AAGAATTGGAGAAGGAGAAT+CGG | 0.451919 | 2.3:+45225523 | None:intergenic |
GTTGTCTGTGGAGATTCGTC+TGG | 0.452765 | 2.3:-45222445 | MS.gene062072:CDS |
ATTTAGAGAGAGGTGGTGAA+GGG | 0.459642 | 2.3:+45222231 | None:intergenic |
GATTTGACCATTTAACATAC+AGG | 0.472029 | 2.3:+45221868 | None:intergenic |
TATAACATCTTCGATGGAAT+CGG | 0.473689 | 2.3:+45222372 | None:intergenic |
AATTTAGAGAGAGGTGGTGA+AGG | 0.475466 | 2.3:+45222230 | None:intergenic |
GAACGAGACAATCGGAACTA+TGG | 0.481166 | 2.3:-45222728 | MS.gene062072:CDS |
AGTATCAAGAAAATTAGAAA+GGG | 0.482563 | 2.3:-45224268 | MS.gene062072:CDS |
AGGACCCTATCAATTTCGGC+TGG | 0.493252 | 2.3:-45221733 | MS.gene062072:CDS |
GATAATGAAGGATGCGCACT+CGG | 0.495847 | 2.3:-45225609 | MS.gene062072:CDS |
GAGTATCAAGAAAATTAGAA+AGG | 0.498335 | 2.3:-45224269 | MS.gene062072:CDS |
TCATATCAAAAGCTTTCGAT+TGG | 0.502770 | 2.3:+45222131 | None:intergenic |
CCTGAGAAACCAAATGGGAA+TGG | 0.514430 | 2.3:+45221519 | None:intergenic |
CTCTCTGCCCTTCACATACG+TGG | 0.515200 | 2.3:-45222667 | MS.gene062072:CDS |
TGTCAGAAGCAAGGTTTGAA+AGG | 0.521753 | 2.3:+45221936 | None:intergenic |
AGTAGAAGAAGAATTGGAGA+AGG | 0.525019 | 2.3:+45225515 | None:intergenic |
GGTGTAGACGAGCAGCTAGA+AGG | 0.527981 | 2.3:-45222283 | MS.gene062072:CDS |
CGGAACTATGGTCTAAGTAT+CGG | 0.529829 | 2.3:-45222716 | MS.gene062072:CDS |
CAAAATTTAAATGCTGTAAG+TGG | 0.537765 | 2.3:-45221913 | MS.gene062072:CDS |
ATATCAGAGTACCTTTCAGT+TGG | 0.546568 | 2.3:-45222352 | MS.gene062072:CDS |
CTCTGATATAACATCTTCGA+TGG | 0.555752 | 2.3:+45222366 | None:intergenic |
GTATCAAGAAAATTAGAAAG+GGG | 0.565823 | 2.3:-45224267 | MS.gene062072:CDS |
TTTAGAGAGAGGTGGTGAAG+GGG | 0.570529 | 2.3:+45222232 | None:intergenic |
TTCATTATCATGCACCTCCA+CGG | 0.572313 | 2.3:+45225623 | None:intergenic |
TTTATGATCCACGTATGTGA+AGG | 0.575433 | 2.3:+45222659 | None:intergenic |
TTGAACCTGAGAAACCAAAT+GGG | 0.577631 | 2.3:+45221514 | None:intergenic |
ATAATGAAGGATGCGCACTC+GGG | 0.578764 | 2.3:-45225608 | MS.gene062072:CDS |
CTCTTACCAGAAGTTCAGGA+TGG | 0.580229 | 2.3:-45221985 | MS.gene062072:CDS |
TATCAAGAAAATTAGAAAGG+GGG | 0.582590 | 2.3:-45224266 | MS.gene062072:CDS |
TCAGCATATAAAGTCCGTGC+TGG | 0.583176 | 2.3:-45222190 | MS.gene062072:CDS |
TACTGACCTCTTGCAGCCAA+AGG | 0.583268 | 2.3:-45224224 | MS.gene062072:intron |
AGCATACCTTTGGCTGCAAG+AGG | 0.584254 | 2.3:+45224218 | None:intergenic |
CTCGAGAAGATTCTCATCGA+AGG | 0.597081 | 2.3:-45222304 | MS.gene062072:CDS |
AGGATGCGCACTCGGGATTG+CGG | 0.598412 | 2.3:-45225601 | MS.gene062072:CDS |
ATGCAGAATCACCAACTGAA+AGG | 0.598509 | 2.3:+45222341 | None:intergenic |
AGGGCAGAGAGCTACAACGT+TGG | 0.602461 | 2.3:+45222679 | None:intergenic |
TTATGATCCACGTATGTGAA+GGG | 0.607337 | 2.3:+45222660 | None:intergenic |
GTACATTGCTTAACATATGG+AGG | 0.607730 | 2.3:-45221569 | MS.gene062072:CDS |
TCATATAGCAATTTAGAGAG+AGG | 0.611256 | 2.3:+45222221 | None:intergenic |
GCCGCAGTAGAAAAGCAAAA+CGG | 0.617046 | 2.3:-45225714 | MS.gene062072:CDS |
GGACCCTATCAATTTCGGCT+GGG | 0.618597 | 2.3:-45221732 | MS.gene062072:CDS |
AACAGCAGTGAATTTGCACA+AGG | 0.622133 | 2.3:-45225319 | MS.gene062072:intron |
TGAGAAACCAAATGGGAATG+GGG | 0.624351 | 2.3:+45221521 | None:intergenic |
CAAAACGGTTGCAGCAACGA+CGG | 0.625848 | 2.3:-45225699 | MS.gene062072:CDS |
TTACCCAGCCGAAATTGATA+GGG | 0.626489 | 2.3:+45221729 | None:intergenic |
AAAGAAGGACGGGTGATCTG+TGG | 0.627550 | 2.3:-45224310 | MS.gene062072:intron |
CACTGCACAGAGAGCAACAG+TGG | 0.628872 | 2.3:+45225656 | None:intergenic |
GTGGAGGTGCATGATAATGA+AGG | 0.652320 | 2.3:-45225621 | MS.gene062072:CDS |
TGCAGTGCTAACTAACGCCG+TGG | 0.654951 | 2.3:-45225640 | MS.gene062072:CDS |
TATAGCAATTTAGAGAGAGG+TGG | 0.656702 | 2.3:+45222224 | None:intergenic |
CGACGGTGCAGCGATTCTGG+AGG | 0.659267 | 2.3:-45225682 | MS.gene062072:CDS |
GTGGTCCAAAATTGATTGTG+AGG | 0.672157 | 2.3:-45224291 | MS.gene062072:CDS |
CAGGAAATATCTGTTGTCTG+TGG | 0.685663 | 2.3:-45222457 | MS.gene062072:CDS |
CAGATAATAAATCACCAGCA+CGG | 0.710542 | 2.3:+45222176 | None:intergenic |
AGTGCTAACTAACGCCGTGG+AGG | 0.715440 | 2.3:-45225637 | MS.gene062072:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATAAACAATTCATATTT+GGG | - | chr2.3:45222183-45222202 | MS.gene062072:CDS | 10.0% |
!! | TATAATAAACAATTCATATT+TGG | - | chr2.3:45222182-45222201 | MS.gene062072:CDS | 10.0% |
!! | TTGTAAAAATTAATTAATTG+AGG | - | chr2.3:45222846-45222865 | MS.gene062072:intron | 10.0% |
!! | TATAATATAAACCATCAATT+TGG | - | chr2.3:45223571-45223590 | MS.gene062072:intron | 15.0% |
!! | AAAAAAATTCACTAGATGTT+CGG | - | chr2.3:45225495-45225514 | MS.gene062072:CDS | 20.0% |
!! | ACAATTTCATCTAATTTATG+AGG | + | chr2.3:45224315-45224334 | None:intergenic | 20.0% |
!! | AGTATCAAGAAAATTAGAAA+GGG | - | chr2.3:45222927-45222946 | MS.gene062072:intron | 20.0% |
!! | AGTTGTGTAAACATTTAATT+TGG | + | chr2.3:45222791-45222810 | None:intergenic | 20.0% |
!! | AGTTTCCTAAATTCATAAAT+GGG | + | chr2.3:45224245-45224264 | None:intergenic | 20.0% |
!! | ATTCTTAATGTATCAAGTTA+GGG | - | chr2.3:45222362-45222381 | MS.gene062072:CDS | 20.0% |
!! | CTAATATTGAATTATTGTTC+AGG | - | chr2.3:45224719-45224738 | MS.gene062072:intron | 20.0% |
!! | GATGAATTGAGAATAATTTA+GGG | - | chr2.3:45222707-45222726 | MS.gene062072:CDS | 20.0% |
!! | TATTCTTAATGTATCAAGTT+AGG | - | chr2.3:45222361-45222380 | MS.gene062072:CDS | 20.0% |
!! | TCATTATATGTCTATTGTTT+AGG | - | chr2.3:45222735-45222754 | MS.gene062072:intron | 20.0% |
!! | TGATGAATTGAGAATAATTT+AGG | - | chr2.3:45222706-45222725 | MS.gene062072:CDS | 20.0% |
!! | TTCAAGATATATTATTTCCA+AGG | + | chr2.3:45224116-45224135 | None:intergenic | 20.0% |
!! | TTTATTAAATCCTAGGATTA+TGG | - | chr2.3:45223269-45223288 | MS.gene062072:intron | 20.0% |
!!! | AATTTGTATTTGGCTTTTTA+GGG | - | chr2.3:45224445-45224464 | MS.gene062072:intron | 20.0% |
!!! | ACAATTATATTTGCTACATA+GGG | - | chr2.3:45221916-45221935 | MS.gene062072:CDS | 20.0% |
!!! | ATTGATATTCTAGTTTAGTT+AGG | - | chr2.3:45224578-45224597 | MS.gene062072:intron | 20.0% |
!!! | ATTTTTGAGCTTATGAAAAA+TGG | - | chr2.3:45221955-45221974 | MS.gene062072:CDS | 20.0% |
!!! | TAAGTTTCTTAATGTTGATT+TGG | - | chr2.3:45225235-45225254 | MS.gene062072:intron | 20.0% |
!!! | TACAATTATATTTGCTACAT+AGG | - | chr2.3:45221915-45221934 | MS.gene062072:CDS | 20.0% |
!!! | TATTTTCATAATATAGCCTA+TGG | - | chr2.3:45222495-45222514 | MS.gene062072:intron | 20.0% |
!!! | TGGATAGATTTTGTATTAAA+AGG | + | chr2.3:45224151-45224170 | None:intergenic | 20.0% |
!!! | TTATTGGCTTATATATGTTA+TGG | - | chr2.3:45225650-45225669 | MS.gene062072:CDS | 20.0% |
!!! | TTCTAAAATTATTATCAGTG+TGG | + | chr2.3:45222246-45222265 | None:intergenic | 20.0% |
! | AAAAAATTCACTAGATGTTC+GGG | - | chr2.3:45225496-45225515 | MS.gene062072:CDS | 25.0% |
! | AAAGGAATAATTATATGCTG+TGG | - | chr2.3:45223161-45223180 | MS.gene062072:intron | 25.0% |
! | AATTGATATACCATAATCCT+AGG | + | chr2.3:45223282-45223301 | None:intergenic | 25.0% |
! | AGAACAAAACTAACCAAAAT+AGG | + | chr2.3:45223362-45223381 | None:intergenic | 25.0% |
! | CAAAATTTAAATGCTGTAAG+TGG | - | chr2.3:45225282-45225301 | MS.gene062072:intron | 25.0% |
! | CAGTTTCCTAAATTCATAAA+TGG | + | chr2.3:45224246-45224265 | None:intergenic | 25.0% |
! | CCTTCATTATTATACATGTA+CGG | - | chr2.3:45223866-45223885 | MS.gene062072:intron | 25.0% |
! | CTTCATTATTATACATGTAC+GGG | - | chr2.3:45223867-45223886 | MS.gene062072:intron | 25.0% |
! | GAAATTAAGCCAAAAAAATG+TGG | + | chr2.3:45223658-45223677 | None:intergenic | 25.0% |
! | GAGTATCAAGAAAATTAGAA+AGG | - | chr2.3:45222926-45222945 | MS.gene062072:intron | 25.0% |
! | GTATCAAGAAAATTAGAAAG+GGG | - | chr2.3:45222928-45222947 | MS.gene062072:intron | 25.0% |
! | TAATTTCTTGAGTTTAGACT+TGG | - | chr2.3:45223671-45223690 | MS.gene062072:intron | 25.0% |
! | TATCAAGAAAATTAGAAAGG+GGG | - | chr2.3:45222929-45222948 | MS.gene062072:intron | 25.0% |
! | TATGGACATTAATACACAAA+GGG | + | chr2.3:45223759-45223778 | None:intergenic | 25.0% |
! | TCATGATGCTATTAATTAGT+GGG | - | chr2.3:45223316-45223335 | MS.gene062072:intron | 25.0% |
! | TTCTAGTCTCAATTTGTATT+TGG | - | chr2.3:45224435-45224454 | MS.gene062072:intron | 25.0% |
!! | ATAAATTTGAAGCATACCTT+TGG | + | chr2.3:45222990-45223009 | None:intergenic | 25.0% |
!! | CAATTATATTTGCTACATAG+GGG | - | chr2.3:45221917-45221936 | MS.gene062072:CDS | 25.0% |
!! | TCAATATTAGTTTCACTTCT+GGG | + | chr2.3:45224709-45224728 | None:intergenic | 25.0% |
!! | TGATGATATGCTTAGATTTT+TGG | - | chr2.3:45222821-45222840 | MS.gene062072:intron | 25.0% |
!! | TTCAATATTAGTTTCACTTC+TGG | + | chr2.3:45224710-45224729 | None:intergenic | 25.0% |
!! | TTTTGTCTACCATAATATAC+AGG | + | chr2.3:45223903-45223922 | None:intergenic | 25.0% |
!!! | AGTTGGTTTTATTAAATCCT+AGG | - | chr2.3:45223262-45223281 | MS.gene062072:intron | 25.0% |
!!! | CAATTTGTATTTGGCTTTTT+AGG | - | chr2.3:45224444-45224463 | MS.gene062072:intron | 25.0% |
!!! | CTTATTTTGAAAGTAACTAG+TGG | - | chr2.3:45222676-45222695 | MS.gene062072:CDS | 25.0% |
!!! | GATTTTTTGCATGAAAAAGA+AGG | - | chr2.3:45222870-45222889 | MS.gene062072:intron | 25.0% |
!!! | TGTCTTGTGTTATTACTTTT+AGG | - | chr2.3:45223839-45223858 | MS.gene062072:intron | 25.0% |
AAGCTATGAACTATTTCCAT+AGG | + | chr2.3:45222514-45222533 | None:intergenic | 30.0% | |
AATAAGCTGTATATCCAAAC+AGG | - | chr2.3:45222627-45222646 | MS.gene062072:intron | 30.0% | |
AATATATGCTACATATCGAG+TGG | + | chr2.3:45224175-45224194 | None:intergenic | 30.0% | |
ACTTTCAAAATAAGAGAGAG+TGG | + | chr2.3:45222670-45222689 | None:intergenic | 30.0% | |
ATAAGCTGTATATCCAAACA+GGG | - | chr2.3:45222628-45222647 | MS.gene062072:intron | 30.0% | |
ATAATTATTCCTTTGCTGCT+TGG | + | chr2.3:45223155-45223174 | None:intergenic | 30.0% | |
ATGGACATTAATACACAAAG+GGG | + | chr2.3:45223758-45223777 | None:intergenic | 30.0% | |
CCGTACATGTATAATAATGA+AGG | + | chr2.3:45223869-45223888 | None:intergenic | 30.0% | |
CCTTGCATGATTTCAAAAAA+TGG | + | chr2.3:45225445-45225464 | None:intergenic | 30.0% | |
CTAGATGATTTCTATATCAC+TGG | - | chr2.3:45223383-45223402 | MS.gene062072:intron | 30.0% | |
CTATGGACATTAATACACAA+AGG | + | chr2.3:45223760-45223779 | None:intergenic | 30.0% | |
CTCATCTGTTAGTATTGTTT+CGG | - | chr2.3:45222287-45222306 | MS.gene062072:CDS | 30.0% | |
CTCATGATGCTATTAATTAG+TGG | - | chr2.3:45223315-45223334 | MS.gene062072:intron | 30.0% | |
CTTAACATATGGAGGTTTAT+TGG | - | chr2.3:45225634-45225653 | MS.gene062072:CDS | 30.0% | |
CTTTGTGTATTAATGTCCAT+AGG | - | chr2.3:45223758-45223777 | MS.gene062072:intron | 30.0% | |
GAATAGATGGAATGTTGTAA+TGG | - | chr2.3:45223206-45223225 | MS.gene062072:intron | 30.0% | |
GATTTGACCATTTAACATAC+AGG | + | chr2.3:45225330-45225349 | None:intergenic | 30.0% | |
TAACAAAAAATATGCAGCAC+TGG | + | chr2.3:45225096-45225115 | None:intergenic | 30.0% | |
TATAACATCTTCGATGGAAT+CGG | + | chr2.3:45224826-45224845 | None:intergenic | 30.0% | |
TATCAGAGTAGAAGAAGAAT+TGG | + | chr2.3:45221689-45221708 | None:intergenic | 30.0% | |
TCATATAGCAATTTAGAGAG+AGG | + | chr2.3:45224977-45224996 | None:intergenic | 30.0% | |
TCATATCAAAAGCTTTCGAT+TGG | + | chr2.3:45225067-45225086 | None:intergenic | 30.0% | |
TCTTGAAATACAATGACAAC+AGG | + | chr2.3:45224209-45224228 | None:intergenic | 30.0% | |
TGCTTGAATCCTGTATATTA+TGG | - | chr2.3:45223891-45223910 | MS.gene062072:intron | 30.0% | |
TTAGGAAACTGTCAACTAAA+AGG | - | chr2.3:45224255-45224274 | MS.gene062072:CDS | 30.0% | |
TTATACACAAGTGCTTATCA+TGG | - | chr2.3:45222580-45222599 | MS.gene062072:intron | 30.0% | |
TTGAGTTTATCTACTGACAT+AGG | - | chr2.3:45222404-45222423 | MS.gene062072:CDS | 30.0% | |
! | AGAGTGGAAATTTAAGACTA+GGG | + | chr2.3:45222654-45222673 | None:intergenic | 30.0% |
! | ATACTCCTCACAATCAATTT+TGG | + | chr2.3:45222912-45222931 | None:intergenic | 30.0% |
! | ATATTACAGAGAGCATATCT+GGG | + | chr2.3:45224658-45224677 | None:intergenic | 30.0% |
! | TAAATTTTGTGTCAGAAGCA+AGG | + | chr2.3:45225271-45225290 | None:intergenic | 30.0% |
! | TCTATTGTTTAGGACCAAAT+TGG | - | chr2.3:45222745-45222764 | MS.gene062072:intron | 30.0% |
! | TGTATCTTTGAGTCCTATTT+TGG | - | chr2.3:45223346-45223365 | MS.gene062072:intron | 30.0% |
! | TTACTAGTTGAAGTGAGTTT+TGG | - | chr2.3:45223239-45223258 | MS.gene062072:intron | 30.0% |
! | TTGCATCAGTTGCTAATTTT+TGG | - | chr2.3:45225162-45225181 | MS.gene062072:intron | 30.0% |
! | TTTAGAGCCTGTATGTTAAA+TGG | - | chr2.3:45225320-45225339 | MS.gene062072:CDS | 30.0% |
! | TTTGTTGTATAGTATCTCCT+TGG | - | chr2.3:45224096-45224115 | MS.gene062072:intron | 30.0% |
! | TTTTGCATGAAAAAGAAGGA+CGG | - | chr2.3:45222874-45222893 | MS.gene062072:intron | 30.0% |
! | TTTTTGAACATGCTTTCTCT+TGG | - | chr2.3:45221617-45221636 | MS.gene062072:CDS | 30.0% |
!! | GTAACACATATTTTTCAGCT+TGG | - | chr2.3:45225602-45225621 | MS.gene062072:CDS | 30.0% |
!! | TCAGTTGCTAATTTTTGGAT+AGG | - | chr2.3:45225167-45225186 | MS.gene062072:intron | 30.0% |
!! | TCTGTAACTTGTCTCAATTT+TGG | - | chr2.3:45223982-45224001 | MS.gene062072:intron | 30.0% |
!! | TGTTGAGAATTTTGAGTGAA+TGG | + | chr2.3:45221739-45221758 | None:intergenic | 30.0% |
!!! | CCATTTTTTGAAATCATGCA+AGG | - | chr2.3:45225442-45225461 | MS.gene062072:intron | 30.0% |
!!! | CGTATTAGTTTTTCATGCAT+TGG | - | chr2.3:45223016-45223035 | MS.gene062072:intron | 30.0% |
!!! | CTCTAACACGTTTTAATTGA+AGG | + | chr2.3:45222331-45222350 | None:intergenic | 30.0% |
!!! | TGCTGCATATTTTTTGTTAC+TGG | - | chr2.3:45225097-45225116 | MS.gene062072:intron | 30.0% |
AAAAATGGCAATCATAGACG+AGG | + | chr2.3:45225430-45225449 | None:intergenic | 35.0% | |
AACCAATGCTTGTTTGGATA+AGG | + | chr2.3:45222156-45222175 | None:intergenic | 35.0% | |
AAGAATTGGAGAAGGAGAAT+CGG | + | chr2.3:45221675-45221694 | None:intergenic | 35.0% | |
AGTAGAAGAAGAATTGGAGA+AGG | + | chr2.3:45221683-45221702 | None:intergenic | 35.0% | |
ATAGCAACAGTGTGAATAGA+TGG | - | chr2.3:45223193-45223212 | MS.gene062072:intron | 35.0% | |
ATGCTGTAAGTGGTCATTAA+TGG | - | chr2.3:45225292-45225311 | MS.gene062072:intron | 35.0% | |
ATTACCACTCACCAAATTGA+TGG | + | chr2.3:45223585-45223604 | None:intergenic | 35.0% | |
CAGACATAACTCGTAATGTT+TGG | - | chr2.3:45225399-45225418 | MS.gene062072:intron | 35.0% | |
CAGATAATAAATCACCAGCA+CGG | + | chr2.3:45225022-45225041 | None:intergenic | 35.0% | |
CATGAATCTGTGAATAGAAC+TGG | - | chr2.3:45225551-45225570 | MS.gene062072:CDS | 35.0% | |
CCATTGAAAAAGAGATACAG+TGG | + | chr2.3:45224053-45224072 | None:intergenic | 35.0% | |
CTCTGATATAACATCTTCGA+TGG | + | chr2.3:45224832-45224851 | None:intergenic | 35.0% | |
GAATATCACTCTCTCCAATT+TGG | + | chr2.3:45222762-45222781 | None:intergenic | 35.0% | |
GACAGTGATAAATGAAGTTG+TGG | - | chr2.3:45223805-45223824 | MS.gene062072:intron | 35.0% | |
GGTGTACATTGCTTAACATA+TGG | - | chr2.3:45225623-45225642 | MS.gene062072:CDS | 35.0% | |
GTACATTGCTTAACATATGG+AGG | - | chr2.3:45225626-45225645 | MS.gene062072:CDS | 35.0% | |
TAAGCCAAAAAAATGTGGCA+TGG | + | chr2.3:45223653-45223672 | None:intergenic | 35.0% | |
TATAGCAATTTAGAGAGAGG+TGG | + | chr2.3:45224974-45224993 | None:intergenic | 35.0% | |
TCAAACAAGATCTGAGAAAG+AGG | + | chr2.3:45224381-45224400 | None:intergenic | 35.0% | |
TCCATGAAATGTTTGACGAA+AGG | + | chr2.3:45224608-45224627 | None:intergenic | 35.0% | |
TCCTAAATTCATAAATGGGC+AGG | + | chr2.3:45224241-45224260 | None:intergenic | 35.0% | |
TCCTGCCCATTTATGAATTT+AGG | - | chr2.3:45224237-45224256 | MS.gene062072:CDS | 35.0% | |
TGATGTTCATGGTTATGTGT+AGG | - | chr2.3:45223415-45223434 | MS.gene062072:intron | 35.0% | |
TGATTTCTATATCACTGGAG+TGG | - | chr2.3:45223388-45223407 | MS.gene062072:intron | 35.0% | |
TTAACTCTTACCAGAAGTTC+AGG | - | chr2.3:45225206-45225225 | MS.gene062072:intron | 35.0% | |
TTATCACTGTCATTGCTCAT+TGG | + | chr2.3:45223796-45223815 | None:intergenic | 35.0% | |
TTATGATCCACGTATGTGAA+GGG | + | chr2.3:45224538-45224557 | None:intergenic | 35.0% | |
TTGAACCTGAGAAACCAAAT+GGG | + | chr2.3:45225684-45225703 | None:intergenic | 35.0% | |
TTTATGATCCACGTATGTGA+AGG | + | chr2.3:45224539-45224558 | None:intergenic | 35.0% | |
TTTGAACCTGAGAAACCAAA+TGG | + | chr2.3:45225685-45225704 | None:intergenic | 35.0% | |
TTTGCATGAAAAAGAAGGAC+GGG | - | chr2.3:45222875-45222894 | MS.gene062072:intron | 35.0% | |
! | ATATCAGAGTACCTTTCAGT+TGG | - | chr2.3:45224843-45224862 | MS.gene062072:intron | 35.0% |
! | CAGATAGATTGTGGTGTTTT+TGG | - | chr2.3:45221852-45221871 | MS.gene062072:CDS | 35.0% |
! | CATATTACAGAGAGCATATC+TGG | + | chr2.3:45224659-45224678 | None:intergenic | 35.0% |
! | GAGAGTGGAAATTTAAGACT+AGG | + | chr2.3:45222655-45222674 | None:intergenic | 35.0% |
! | GTCTCTGAAGAACTTGTAAT+TGG | + | chr2.3:45224784-45224803 | None:intergenic | 35.0% |
! | TAAACCATCAATTTGGTGAG+TGG | - | chr2.3:45223578-45223597 | MS.gene062072:intron | 35.0% |
! | TATTACAGAGAGCATATCTG+GGG | + | chr2.3:45224657-45224676 | None:intergenic | 35.0% |
! | TGTGTTTTGCAGATAGATTG+TGG | - | chr2.3:45221843-45221862 | MS.gene062072:CDS | 35.0% |
!! | TATCCAAACAAGCATTGGTT+AGG | - | chr2.3:45222156-45222175 | MS.gene062072:CDS | 35.0% |
!! | TTTTTAGGGAACGAGACAAT+CGG | - | chr2.3:45224459-45224478 | MS.gene062072:intron | 35.0% |
!!! | ATGTCCATGCCACATTTTTT+TGG | - | chr2.3:45223646-45223665 | MS.gene062072:intron | 35.0% |
!!! | CAATGGTTTGGTTTTGGTTT+TGG | - | chr2.3:45223440-45223459 | MS.gene062072:intron | 35.0% |
!!! | CCACTGTATCTCTTTTTCAA+TGG | - | chr2.3:45224050-45224069 | MS.gene062072:intron | 35.0% |
!!! | GCATATTTTTTGTTACTGGC+AGG | - | chr2.3:45225101-45225120 | MS.gene062072:intron | 35.0% |
AACAAGATCTGAGAAAGAGG+AGG | + | chr2.3:45224378-45224397 | None:intergenic | 40.0% | |
AACAGCAGTGAATTTGCACA+AGG | - | chr2.3:45221876-45221895 | MS.gene062072:CDS | 40.0% | |
AATTTAGAGAGAGGTGGTGA+AGG | + | chr2.3:45224968-45224987 | None:intergenic | 40.0% | |
AGCTTCCCATTGTATGGAAA+CGG | + | chr2.3:45223709-45223728 | None:intergenic | 40.0% | |
AGTCCTAACCAATGCTTGTT+TGG | + | chr2.3:45222162-45222181 | None:intergenic | 40.0% | |
ATGCAGAATCACCAACTGAA+AGG | + | chr2.3:45224857-45224876 | None:intergenic | 40.0% | |
ATGGTTATGTGTAGGAGCAA+TGG | - | chr2.3:45223423-45223442 | MS.gene062072:intron | 40.0% | |
ATTCATAAATGGGCAGGAAG+AGG | + | chr2.3:45224235-45224254 | None:intergenic | 40.0% | |
ATTGGAGAGAGTGATATTCG+AGG | - | chr2.3:45222763-45222782 | MS.gene062072:intron | 40.0% | |
ATTTAGAGAGAGGTGGTGAA+GGG | + | chr2.3:45224967-45224986 | None:intergenic | 40.0% | |
CAGGAAATATCTGTTGTCTG+TGG | - | chr2.3:45224738-45224757 | MS.gene062072:intron | 40.0% | |
CGGAACTATGGTCTAAGTAT+CGG | - | chr2.3:45224479-45224498 | MS.gene062072:intron | 40.0% | |
CTGAGAAACCAAATGGGAAT+GGG | + | chr2.3:45225678-45225697 | None:intergenic | 40.0% | |
CTGTAAAGCTTCCCATTGTA+TGG | + | chr2.3:45223715-45223734 | None:intergenic | 40.0% | |
GAAAATTAGAAAGGGGGAAG+AGG | - | chr2.3:45222935-45222954 | MS.gene062072:intron | 40.0% | |
GATAAACAAACCAGTACGAG+TGG | - | chr2.3:45223049-45223068 | MS.gene062072:intron | 40.0% | |
GATACAGTGGTTTCACAGTA+TGG | + | chr2.3:45224040-45224059 | None:intergenic | 40.0% | |
GATATAGTACCAAGCAGCAA+AGG | - | chr2.3:45223143-45223162 | MS.gene062072:intron | 40.0% | |
GCCTTTCGTCAAACATTTCA+TGG | - | chr2.3:45224604-45224623 | MS.gene062072:intron | 40.0% | |
GTATCAAGTTAGGGTCTACA+TGG | - | chr2.3:45222371-45222390 | MS.gene062072:CDS | 40.0% | |
GTCATTACTTGCACATCTTG+TGG | - | chr2.3:45223501-45223520 | MS.gene062072:intron | 40.0% | |
GTGGTCCAAAATTGATTGTG+AGG | - | chr2.3:45222904-45222923 | MS.gene062072:intron | 40.0% | |
TATGCTACATATCGAGTGGA+TGG | + | chr2.3:45224171-45224190 | None:intergenic | 40.0% | |
TATGTGTAGGAGCAATGGTT+TGG | - | chr2.3:45223428-45223447 | MS.gene062072:intron | 40.0% | |
TGAAATGTTTGACGAAAGGC+TGG | + | chr2.3:45224604-45224623 | None:intergenic | 40.0% | |
TGAGAAACCAAATGGGAATG+GGG | + | chr2.3:45225677-45225696 | None:intergenic | 40.0% | |
TGTCAGAAGCAAGGTTTGAA+AGG | + | chr2.3:45225262-45225281 | None:intergenic | 40.0% | |
TTACTTGCACATCTTGTGGT+TGG | - | chr2.3:45223505-45223524 | MS.gene062072:intron | 40.0% | |
TTCATTATCATGCACCTCCA+CGG | + | chr2.3:45221575-45221594 | None:intergenic | 40.0% | |
TTGGAGAGAGTGATATTCGA+GGG | - | chr2.3:45222764-45222783 | MS.gene062072:intron | 40.0% | |
! | AGCCTTATCCAAACAAGCAT+TGG | - | chr2.3:45222151-45222170 | MS.gene062072:CDS | 40.0% |
! | CGAAAGCTTTTGATATGAGC+AGG | - | chr2.3:45225069-45225088 | MS.gene062072:intron | 40.0% |
! | CGTGCTGGTGATTTATTATC+TGG | - | chr2.3:45225020-45225039 | MS.gene062072:intron | 40.0% |
!! | ACCGTTTTGCTTTTCTACTG+CGG | + | chr2.3:45221485-45221504 | None:intergenic | 40.0% |
!! | GCTAATTTTTGGATAGGAGC+TGG | - | chr2.3:45225173-45225192 | MS.gene062072:intron | 40.0% |
!!! | GTTGAAGTGAGTTTTGGAGT+TGG | - | chr2.3:45223245-45223264 | MS.gene062072:intron | 40.0% |
!!! | TAGGAGCAATGGTTTGGTTT+TGG | - | chr2.3:45223434-45223453 | MS.gene062072:intron | 40.0% |
AGACACCCGTTTCCATACAA+TGG | - | chr2.3:45223700-45223719 | MS.gene062072:intron | 45.0% | |
ATAATGAAGGATGCGCACTC+GGG | - | chr2.3:45221587-45221606 | MS.gene062072:CDS | 45.0% | |
ATGTCCATAGGCTGTAGCAT+TGG | - | chr2.3:45223770-45223789 | MS.gene062072:intron | 45.0% | |
CAAGTTAGGGTCTACATGGA+TGG | - | chr2.3:45222375-45222394 | MS.gene062072:CDS | 45.0% | |
CCTGAGAAACCAAATGGGAA+TGG | + | chr2.3:45225679-45225698 | None:intergenic | 45.0% | |
CGGGCTCATGATATCAAAAC+TGG | - | chr2.3:45225515-45225534 | MS.gene062072:CDS | 45.0% | |
CTCGAGAAGATTCTCATCGA+AGG | - | chr2.3:45224891-45224910 | MS.gene062072:intron | 45.0% | |
CTCTTACCAGAAGTTCAGGA+TGG | - | chr2.3:45225210-45225229 | MS.gene062072:intron | 45.0% | |
CTTACTCCATCCTGAACTTC+TGG | + | chr2.3:45225219-45225238 | None:intergenic | 45.0% | |
GAACGAGACAATCGGAACTA+TGG | - | chr2.3:45224467-45224486 | MS.gene062072:intron | 45.0% | |
GAATGGAGCTATGCGAAGTT+TGG | + | chr2.3:45221722-45221741 | None:intergenic | 45.0% | |
GACACCCGTTTCCATACAAT+GGG | - | chr2.3:45223701-45223720 | MS.gene062072:intron | 45.0% | |
GAGAATCGGTAGCAAGCATT+AGG | + | chr2.3:45221661-45221680 | None:intergenic | 45.0% | |
GAGTGGAAGAGGAGAAAGTA+TGG | - | chr2.3:45223066-45223085 | MS.gene062072:intron | 45.0% | |
GATAATGAAGGATGCGCACT+CGG | - | chr2.3:45221586-45221605 | MS.gene062072:CDS | 45.0% | |
GCCGCAGTAGAAAAGCAAAA+CGG | - | chr2.3:45221481-45221500 | MS.gene062072:CDS | 45.0% | |
GCTTCCCATTGTATGGAAAC+GGG | + | chr2.3:45223708-45223727 | None:intergenic | 45.0% | |
TCAGCATATAAAGTCCGTGC+TGG | - | chr2.3:45225005-45225024 | MS.gene062072:intron | 45.0% | |
TTATGGTCCCCATTCCCATT+TGG | - | chr2.3:45225667-45225686 | MS.gene062072:CDS | 45.0% | |
TTTAGAGAGAGGTGGTGAAG+GGG | + | chr2.3:45224966-45224985 | None:intergenic | 45.0% | |
! | CCATTCCCATTTGGTTTCTC+AGG | - | chr2.3:45225676-45225695 | MS.gene062072:CDS | 45.0% |
! | GTGGAGGTGCATGATAATGA+AGG | - | chr2.3:45221574-45221593 | MS.gene062072:CDS | 45.0% |
! | TTTAAGACTAGGGCCCTGTT+TGG | + | chr2.3:45222644-45222663 | None:intergenic | 45.0% |
!! | ATTTGCTACATAGGGGCGTT+TGG | - | chr2.3:45221924-45221943 | MS.gene062072:CDS | 45.0% |
AAAGAAGGACGGGTGATCTG+TGG | - | chr2.3:45222885-45222904 | MS.gene062072:intron | 50.0% | |
AGCATACCTTTGGCTGCAAG+AGG | + | chr2.3:45222980-45222999 | None:intergenic | 50.0% | |
CAAAACGGTTGCAGCAACGA+CGG | - | chr2.3:45221496-45221515 | MS.gene062072:CDS | 50.0% | |
CAAACCAGTACGAGTGGAAG+AGG | - | chr2.3:45223055-45223074 | MS.gene062072:intron | 50.0% | |
GGAGTGGATGCTGATGTTCA+TGG | - | chr2.3:45223404-45223423 | MS.gene062072:intron | 50.0% | |
GTTGTCTGTGGAGATTCGTC+TGG | - | chr2.3:45224750-45224769 | MS.gene062072:intron | 50.0% | |
TACTGACCTCTTGCAGCCAA+AGG | - | chr2.3:45222971-45222990 | MS.gene062072:intron | 50.0% | |
TTCTCCTCTTCCACTCGTAC+TGG | + | chr2.3:45223062-45223081 | None:intergenic | 50.0% | |
TTGGCCAATGCTACAGCCTA+TGG | + | chr2.3:45223777-45223796 | None:intergenic | 50.0% | |
AGGGCAGAGAGCTACAACGT+TGG | + | chr2.3:45224519-45224538 | None:intergenic | 55.0% | |
AGTGCTAACTAACGCCGTGG+AGG | - | chr2.3:45221558-45221577 | MS.gene062072:CDS | 55.0% | |
CACTGCACAGAGAGCAACAG+TGG | + | chr2.3:45221542-45221561 | None:intergenic | 55.0% | |
CTCTCTGCCCTTCACATACG+TGG | - | chr2.3:45224528-45224547 | MS.gene062072:intron | 55.0% | |
GGTGTAGACGAGCAGCTAGA+AGG | - | chr2.3:45224912-45224931 | MS.gene062072:intron | 55.0% | |
TGCAGTGCTAACTAACGCCG+TGG | - | chr2.3:45221555-45221574 | MS.gene062072:CDS | 55.0% | |
AGGATGCGCACTCGGGATTG+CGG | - | chr2.3:45221594-45221613 | MS.gene062072:CDS | 60.0% | |
CAACGACGGTGCAGCGATTC+TGG | - | chr2.3:45221510-45221529 | MS.gene062072:CDS | 60.0% | |
CGACGGTGCAGCGATTCTGG+AGG | - | chr2.3:45221513-45221532 | MS.gene062072:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 45221475 | 45225742 | 45221475 | ID=MS.gene062072 |
chr2.3 | mRNA | 45221475 | 45225742 | 45221475 | ID=MS.gene062072.t1;Parent=MS.gene062072 |
chr2.3 | exon | 45225452 | 45225742 | 45225452 | ID=MS.gene062072.t1.exon1;Parent=MS.gene062072.t1 |
chr2.3 | CDS | 45225452 | 45225742 | 45225452 | ID=cds.MS.gene062072.t1;Parent=MS.gene062072.t1 |
chr2.3 | exon | 45225320 | 45225362 | 45225320 | ID=MS.gene062072.t1.exon2;Parent=MS.gene062072.t1 |
chr2.3 | CDS | 45225320 | 45225362 | 45225320 | ID=cds.MS.gene062072.t1;Parent=MS.gene062072.t1 |
chr2.3 | exon | 45224225 | 45224328 | 45224225 | ID=MS.gene062072.t1.exon3;Parent=MS.gene062072.t1 |
chr2.3 | CDS | 45224225 | 45224328 | 45224225 | ID=cds.MS.gene062072.t1;Parent=MS.gene062072.t1 |
chr2.3 | exon | 45222653 | 45222751 | 45222653 | ID=MS.gene062072.t1.exon4;Parent=MS.gene062072.t1 |
chr2.3 | CDS | 45222653 | 45222751 | 45222653 | ID=cds.MS.gene062072.t1;Parent=MS.gene062072.t1 |
chr2.3 | exon | 45221475 | 45222476 | 45221475 | ID=MS.gene062072.t1.exon5;Parent=MS.gene062072.t1 |
chr2.3 | CDS | 45221475 | 45222476 | 45221475 | ID=cds.MS.gene062072.t1;Parent=MS.gene062072.t1 |
Gene Sequence |
Protein sequence |