AlfalfaGEDB | MS.gene062202

M. sativa cultivar XinJiangDaYe / MS.gene062202

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0046983 GO:0097159 GO:1901363
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062202.t1	XP_013468829.1	95	159	8	0	1	159	1	159	1.30E-75	292.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062202.t1	Q9FJK3	46.2	156	83	1	1	155	1	156	1.0e-28	127.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062202.t1	A0A072VMQ1	95.0	159	8	0	1	159	1	159	9.4e-76	292.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene062202.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062202.t1	MTR_1g077320	94.969	159	8	0	1	159	1	159	1.11e-101	288
MS.gene062202.t1	MTR_7g011950	89.937	159	16	0	1	159	1	159	6.43e-96	274
MS.gene062202.t1	MTR_4g028720	86.792	159	21	0	1	159	1	159	1.31e-93	268
MS.gene062202.t1	MTR_1g077390	70.701	157	46	0	1	157	1	157	1.04e-78	230
MS.gene062202.t1	MTR_5g047580	70.513	156	46	0	1	156	1	156	7.06e-77	226
MS.gene062202.t1	MTR_1g084950	74.359	156	40	0	1	156	1	156	2.20e-75	222
MS.gene062202.t1	MTR_1g077300	74.843	159	38	1	1	159	1	157	1.01e-74	220
MS.gene062202.t1	MTR_1g090697	56.129	155	68	0	1	155	1	155	4.07e-59	181
MS.gene062202.t1	MTR_5g047560	58.974	156	48	1	1	156	1	140	3.19e-58	178
MS.gene062202.t1	MTR_1g090710	55.128	156	69	1	1	155	1	156	1.47e-57	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062202.t1	AT5G48670	46.154	156	83	1	1	155	1	156	3.47e-35	125
MS.gene062202.t1	AT3G05860	40.268	149	88	1	1	148	1	149	2.17e-32	114
MS.gene062202.t1	AT3G05860	40.268	149	88	1	1	148	1	149	1.05e-31	114
MS.gene062202.t1	AT3G05860	40.268	149	88	1	1	148	1	149	1.81e-31	114
MS.gene062202.t1	AT5G26630	40.000	160	95	1	1	159	1	160	4.00e-31	112
MS.gene062202.t1	AT1G65300	35.374	147	94	1	3	148	2	148	5.62e-27	102
MS.gene062202.t1	AT1G65330	36.054	147	93	1	3	148	2	148	2.46e-26	100
MS.gene062202.t1	AT5G26650	34.641	153	99	1	4	155	2	154	2.45e-23	94.4
MS.gene062202.t1	AT5G27960	41.026	117	66	2	4	119	2	116	1.70e-22	91.7
MS.gene062202.t1	AT5G27810	43.750	96	53	1	29	123	1	96	4.08e-21	83.2

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Find 23 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTGAAGGAAGCAAAAC+AGG	0.418438	1.1:-57899474	MS.gene062202:CDS
AACAGGTGATTGAGAGGTAT+CGG	0.521473	1.1:-57899457	MS.gene062202:CDS
AAGCAAAACAGGTGATTGAG+AGG	0.611042	1.1:-57899463	MS.gene062202:CDS
AGAGAACTCACTATTCTTTG+TGG	0.526508	1.1:-57899554	MS.gene062202:CDS
AGAGGTGTGGCCAAATCTGA+AGG	0.570010	1.1:-57899486	MS.gene062202:CDS
AGCTGAACATTCGTATGATT+TGG	0.323437	1.1:-57899319	MS.gene062202:CDS
CACTAATGATTCAGCAAGAA+AGG	0.401894	1.1:-57899618	MS.gene062202:CDS
CGAAGCCATGACGAGGAAGA+AGG	0.526668	1.1:-57899657	None:intergenic
CTTTGGTAATCTGTTGCAAA+AGG	0.444012	1.1:+57899387	None:intergenic
GAAAGGCTTCCTACAAGAAG+AGG	0.572219	1.1:-57899601	MS.gene062202:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTGAATCATTAGTGATAA+AGG	+	chr1.1:57899221-57899240	None:intergenic	30.0%
AAATCTGAAGGAAGCAAAAC+AGG	-	chr1.1:57899369-57899388	MS.gene062202:CDS	35.0%
AGAGAACTCACTATTCTTTG+TGG	-	chr1.1:57899289-57899308	MS.gene062202:CDS	35.0%
AGCTGAACATTCGTATGATT+TGG	-	chr1.1:57899524-57899543	MS.gene062202:CDS	35.0%
CACTAATGATTCAGCAAGAA+AGG	-	chr1.1:57899225-57899244	MS.gene062202:CDS	35.0%
TCAGAAACAGTCATATCATC+TGG	+	chr1.1:57899571-57899590	None:intergenic	35.0%
TGAGAGAAAAAATGTGAACC+AGG	-	chr1.1:57899426-57899445	MS.gene062202:CDS	35.0%
AAGCAAAACAGGTGATTGAG+AGG	-	chr1.1:57899380-57899399	MS.gene062202:CDS	40.0%
GCAACAGATTACCAAAGCTA+GGG	-	chr1.1:57899462-57899481	MS.gene062202:CDS	40.0%
GTTGCAAAAGGAAACTTTCC+TGG	+	chr1.1:57899447-57899466	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	57899193	57899672	57899193	ID=MS.gene062202
chr1.1	mRNA	57899193	57899672	57899193	ID=MS.gene062202.t1;Parent=MS.gene062202
chr1.1	exon	57899193	57899672	57899193	ID=MS.gene062202.t1.exon1;Parent=MS.gene062202.t1
chr1.1	CDS	57899193	57899672	57899193	ID=cds.MS.gene062202.t1;Parent=MS.gene062202.t1

Gene Sequence

>MS.gene062202

ATGACGAGGAAGAAGGTGAAACTCGCCTTTATCACTAATGATTCAGCAAGAAAGGCTTCCTACAAGAAGAGGAAGAAAAGTATCATCAAGAAGGTGAGAGAACTCACTATTCTTTGTGGTATTCCAGCATGTGCTATAATTTCCGATCCTTTTGATTCTAAAACAGAGGTGTGGCCAAATCTGAAGGAAGCAAAACAGGTGATTGAGAGGTATCGGAACTCATATATGAAAGATGAGAGAAAAAATGTGAACCAGGAAAGTTTCCTTTTGCAACAGATTACCAAAGCTAGGGATCAACTGAGAAAGCAAAGACAAGATAATCATGAGAATGAGCTGAACATTCGTATGATTTGGTACCTGCAAAACAACACAGTGCCAGATGATATGACTGTTTCTGATTTGAAAGACTTGGATAAGTTAATTGCAAAAAATATGAAGGACATTGATGACAAGATGGCTTCACTTAGTTTATCAAACTGA

Protein sequence

>MS.gene062202.t1

MTRKKVKLAFITNDSARKASYKKRKKSIIKKVRELTILCGIPACAIISDPFDSKTEVWPNLKEAKQVIERYRNSYMKDERKNVNQESFLLQQITKARDQLRKQRQDNHENELNIRMIWYLQNNTVPDDMTVSDLKDLDKLIAKNMKDIDDKMASLSLSN