AlfalfaGEDB | MS.gene062203

M. sativa cultivar XinJiangDaYe / MS.gene062203

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062203.t1	PNX75333.1	86.8	613	14	1	9	554	5	617	1.10E-300	1042

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062203.t1	Q9SZL8	32.7	556	290	6	14	487	86	639	2.2e-92	341.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062203.t1	A0A2K3L9Y4	86.8	613	14	1	9	554	5	617	7.8e-301	1042.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene062203.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062203.t1	MTR_1g019850	93.443	122	8	0	8	129	77	198	7.15e-74	236
MS.gene062203.t1	MTR_0734s0010	96.226	106	4	0	449	554	1	106	1.50e-62	204
MS.gene062203.t1	MTR_0853s0010	59.843	127	44	1	8	127	32	158	3.79e-44	155
MS.gene062203.t1	MTR_6g051425	34.061	229	138	4	40	258	64	289	4.77e-37	141
MS.gene062203.t1	MTR_3g020080	47.917	96	29	2	274	365	3	81	1.72e-20	88.2
MS.gene062203.t1	MTR_0558s0020	24.800	250	158	5	12	231	47	296	8.31e-20	90.5
MS.gene062203.t1	MTR_4g035820	27.119	236	155	6	16	235	90	324	2.34e-19	92.4
MS.gene062203.t1	MTR_2g024230	74.000	50	13	0	8	57	97	146	2.66e-18	82.8
MS.gene062203.t1	MTR_8g446020	27.174	184	117	2	59	231	79	256	4.42e-18	84.7
MS.gene062203.t1	MTR_3g450850	28.270	237	141	7	8	219	54	286	1.43e-17	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062203.t1	AT2G27110	29.016	610	332	16	8	543	56	638	4.68e-77	261
MS.gene062203.t1	AT2G27110	29.016	610	332	16	8	543	56	638	4.68e-77	261
MS.gene062203.t1	AT2G27110	31.696	448	233	9	164	543	51	493	3.53e-72	245
MS.gene062203.t1	AT4G38180	37.455	275	155	5	13	272	85	357	5.44e-56	202
MS.gene062203.t1	AT4G38180	36.406	217	138	0	271	487	423	639	4.22e-49	182
MS.gene062203.t1	AT1G10240	25.273	550	319	12	15	479	62	604	2.80e-55	199
MS.gene062203.t1	AT1G10240	25.273	550	319	12	15	479	62	604	2.80e-55	199
MS.gene062203.t1	AT4G38170	36.296	270	165	5	273	539	190	455	2.44e-50	182
MS.gene062203.t1	AT4G38170	51.923	104	45	2	168	270	21	120	2.61e-29	122
MS.gene062203.t1	AT4G15090	31.271	291	188	4	261	549	392	672	9.60e-41	158

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Find 83 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTATTCAATTTAGGA+GGG	0.507177	1.1:+57890482	MS.gene062203:CDS
AAAGTGCTTCTGTTGAAAAC+AGG	0.437656	1.1:-57890201	None:intergenic
AAAGTTGCTACAATGTTTCA+GGG	0.533512	1.1:+57889480	MS.gene062203:CDS
AAATGGCATATCATACTTGT+TGG	0.423697	1.1:-57889757	None:intergenic
AACTCCAAATCCTTCTTTCT+TGG	0.222792	1.1:-57889151	None:intergenic
AAGCAGGGAAGAGAAGTAAA+TGG	0.304863	1.1:+57889316	MS.gene062203:CDS
AAGGAGAATGAATGGCTTAA+AGG	0.244725	1.1:+57890150	MS.gene062203:CDS
AAGGATTTGGAGTTCGTGTT+CGG	0.488165	1.1:+57889160	MS.gene062203:CDS
AATCCGGTGAAGGGTGCAAA+TGG	0.486093	1.1:-57889774	None:intergenic
AATGATAAATTTCTTCTGGG+TGG	0.588712	1.1:+57889668	MS.gene062203:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTGCTACAATGTTTCA+GGG	+	chr1.1:57889480-57889499	MS.gene062203:CDS	30.0%
AAATGGCATATCATACTTGT+TGG	-	chr1.1:57889760-57889779	None:intergenic	30.0%
AATGATAAATTTCTTCTGGG+TGG	+	chr1.1:57889668-57889687	MS.gene062203:CDS	30.0%
AATTTATGGGATTGCTATGT+AGG	+	chr1.1:57890631-57890650	MS.gene062203:CDS	30.0%
AGAAGAAGAAATCTTGATGT+GGG	+	chr1.1:57889555-57889574	MS.gene062203:CDS	30.0%
AGAAGAATGGGAATGTATAA+TGG	+	chr1.1:57890113-57890132	MS.gene062203:CDS	30.0%
AGGGAAAAACTTGAAAAAGA+AGG	+	chr1.1:57890501-57890520	MS.gene062203:CDS	30.0%
AGTTAAATTTGACAAGGCAA+TGG	+	chr1.1:57890317-57890336	MS.gene062203:CDS	30.0%
ATCCCATAAATTGAAAAAGC+TGG	-	chr1.1:57890623-57890642	None:intergenic	30.0%
CAATGTTCATAATCATGGAA+TGG	+	chr1.1:57889356-57889375	MS.gene062203:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	57889090	57891052	57889090	ID=MS.gene062203
chr1.1	mRNA	57889090	57891052	57889090	ID=MS.gene062203.t1;Parent=MS.gene062203
chr1.1	exon	57889090	57889900	57889090	ID=MS.gene062203.t1.exon1;Parent=MS.gene062203.t1
chr1.1	CDS	57889090	57889900	57889090	ID=cds.MS.gene062203.t1;Parent=MS.gene062203.t1
chr1.1	exon	57890103	57891052	57890103	ID=MS.gene062203.t1.exon2;Parent=MS.gene062203.t1
chr1.1	CDS	57890103	57891052	57890103	ID=cds.MS.gene062203.t1;Parent=MS.gene062203.t1

Gene Sequence

>MS.gene062203

ATGGATAATGAGTGTGTGGAAAATTCCACTGCGGATGTAAAAGAATTCTACACATCGTTTGCCAAGAAAGAAGGATTTGGAGTTCGTGTTCGGTCTACTAAGCAAAATTTTTGCATGTTTGTATGCGCTAATGAAGGTACACATATAGTAAAGGGTGAAAATGAAGAAGGGAAGAGAAAGCGTTCAACCTCAAGAACTGATTGTAAAGCATCACTTACTGTTTCAAAAGCAGGGAAGAGAAGTAAATGGGTTATAAAAAGCATAAACAATGTTCATAATCATGGAATGGTTAGTCCTAAGAGTGTGGCCTATCTGCGGTCTCATAAGAAAATGACTGCAGCAACTAAAAGCCTCGTTGAGAAGTTTGATGAAGAAGGAGTACCTACAGGGAAAGTTGCTACAATGTTTCAGGGTGAAGATAATGCTTTTTCTAGTCGGGATTGCTGGAACCATCTTAGAAATTTCAGAAGAAGAAATCTTGATGTGGGAGATGCTCAAGCTGTCTTTAAATTTTGCAAGAAAAAACAAGTTGAGAATCCCAATTTTTTTTATGCAATACAATGTGATGATGAAGATAGAATGATAAATTTCTTCTGGGTGGATGGAAGAGCAAGATTGGCATATCAATTTTTTTGTGATGTTATTACATTTGATACAACATATAAAACCAACAAGTATGATATGCCATTTGCACCCTTCACCGGATTGAATCATCATTTTCAATCTATCTTATTTGGATGTGCTTTGTTGCAAGATGAGACTCAGAAGACGTTTGAGTGGTTGTTTAGAACATGGCTAGACGCAATGGGTGGTAAATATCCAGTGTCAATAATAACAGATCAAGACTTGGCAATGAAAGCTGCCATAGGCAATGTTTTCCCACATACTCGTCACCGGTTATGTTTATGGCACATAAAAAAAAAAATTTGCTGAGAAGCTTTCCCACATATACCACAAAAATTCAACTTTCAAGCGTAAATTGAAATCTTGTATTCGTGATTCGCCATCTATAGAATACTTTGAAGAAGAATGGGAATGTATAATGGTTGATTATAATTTGAAGGAGAATGAATGGCTTAAAGGGTTGTACGATATAAGAAAATCATGGATTCCTGTTTTCAACAGAAGCACTTTTTTTGCCGGCATGAACACTACACAAAGGAGTGAGAGTATTAATGCCTTTTTTGATTCTTTTGTTAATTCTTCAACAACACTACAAGATTTTGTAGTTAAATTTGACAAGGCAATGGATAGTCGCTGTGAAAAACAAAGAAGAGAGGATTTTGAATCAAGGCATCGATTGCGACTCGTAGTTGTTAAGTCAAAAATTGAGGAGCATGCAGCATCAATATATACAAGAAACATTTTTGGGAAGTTTCACAATGAGTTTATAAAGATTATTCAATTTAGGAGGGAAAAACTTGAAAAAGAAGGGTCTCAGTATAGATATAAGGTATCTAATGATTATGACTCGAAAGACACATTCATAGTTTGTGTGGATTTGGAGACAAAGGTTGCTACTTGTGACTGCCAGCTTTTTCAATTTATGGGATTGCTATGTAGGCATATCTTGGTGATTTTTCATGCAAAAAATGTTGTAGAAATTCCAGACATGTATATTTTAAAGCGTTGGACAAAGGATGCTAACAAAGGTGCTGTGTTTATTGAAGATGGACCAGAGTCTTCCTCTACAGGAAACTCATCAACTTTGCGAAGTTTACATGTACACAAACAAGCAAGTTTGTTACCTGATCTTGCAGCAAAATCTGAGAAAATATATAAGCTGATATCATCTGATTTGGAGGAAACATACAAAAAAGCTTTGATAATGGAAGCTGAATTAGACAATGAGAGCGACATAATTCAGAACCAATTATCAGAGATCCACTCCCATCACAAACTAAAGAAAGAAAAAAAGATTCAATCAAAGAGATTCAAAATGGAAGGATCAAAAGCAGTCTAG

Protein sequence

>MS.gene062203.t1

MDNECVENSTADVKEFYTSFAKKEGFGVRVRSTKQNFCMFVCANEGTHIVKGENEEGKRKRSTSRTDCKASLTVSKAGKRSKWVIKSINNVHNHGMVSPKSVAYLRSHKKMTAATKSLVEKFDEEGVPTGKVATMFQGEDNAFSSRDCWNHLRNFRRRNLDVGDAQAVFKFCKKKQVENPNFFYAIQCDDEDRMINFFWVDGRARLAYQFFCDVITFDTTYKTNKYDMPFAPFTGLNHHFQSILFGCALLQDETQKTFEWLFRTWLDAMGEYFEEEWECIMVDYNLKENEWLKGLYDIRKSWIPVFNRSTFFAGMNTTQRSESINAFFDSFVNSSTTLQDFVVKFDKAMDSRCEKQRREDFESRHRLRLVVVKSKIEEHAASIYTRNIFGKFHNEFIKIIQFRREKLEKEGSQYRYKVSNDYDSKDTFIVCVDLETKVATCDCQLFQFMGLLCRHILVIFHAKNVVEIPDMYILKRWTKDANKGAVFIEDGPESSSTGNSSTLRSLHVHKQASLLPDLAAKSEKIYKLISSDLEETYKKALIMEAELDNESDIIQNQLSEIHSHHKLKKEKKIQSKRFKMEGSKAV