AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062203

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062203.t1 MTR_1g019850 93.443 122 8 0 8 129 77 198 7.15e-74 236
MS.gene062203.t1 MTR_0734s0010 96.226 106 4 0 449 554 1 106 1.50e-62 204
MS.gene062203.t1 MTR_0853s0010 59.843 127 44 1 8 127 32 158 3.79e-44 155
MS.gene062203.t1 MTR_6g051425 34.061 229 138 4 40 258 64 289 4.77e-37 141
MS.gene062203.t1 MTR_3g020080 47.917 96 29 2 274 365 3 81 1.72e-20 88.2
MS.gene062203.t1 MTR_0558s0020 24.800 250 158 5 12 231 47 296 8.31e-20 90.5
MS.gene062203.t1 MTR_4g035820 27.119 236 155 6 16 235 90 324 2.34e-19 92.4
MS.gene062203.t1 MTR_2g024230 74.000 50 13 0 8 57 97 146 2.66e-18 82.8
MS.gene062203.t1 MTR_8g446020 27.174 184 117 2 59 231 79 256 4.42e-18 84.7
MS.gene062203.t1 MTR_3g450850 28.270 237 141 7 8 219 54 286 1.43e-17 85.1
MS.gene062203.t1 MTR_1g070355 24.554 224 154 5 15 225 88 309 1.36e-15 80.5
MS.gene062203.t1 MTR_6g090505 25.258 194 140 2 59 247 54 247 3.94e-15 77.8
MS.gene062203.t1 MTR_5g076070 25.806 217 146 6 16 219 68 282 7.75e-15 75.5
MS.gene062203.t1 MTR_7g446480 27.841 176 120 3 70 239 140 314 2.38e-14 74.7
MS.gene062203.t1 MTR_6g048540 42.857 91 47 2 457 544 106 194 4.96e-14 72.4
MS.gene062203.t1 MTR_7g446510 26.286 175 124 1 70 239 155 329 5.74e-14 73.9
MS.gene062203.t1 MTR_8g465780 31.068 103 70 1 295 396 1 103 1.54e-12 66.6
MS.gene062203.t1 MTR_8g466860 73.684 38 10 0 289 326 81 118 2.27e-12 64.7
MS.gene062203.t1 MTR_1g083640 21.930 228 148 5 9 206 59 286 1.91e-11 65.5
MS.gene062203.t1 MTR_1g033820 63.158 38 14 0 8 45 34 71 3.24e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062203.t1 AT2G27110 29.016 610 332 16 8 543 56 638 4.68e-77 261
MS.gene062203.t1 AT2G27110 29.016 610 332 16 8 543 56 638 4.68e-77 261
MS.gene062203.t1 AT2G27110 31.696 448 233 9 164 543 51 493 3.53e-72 245
MS.gene062203.t1 AT4G38180 37.455 275 155 5 13 272 85 357 5.44e-56 202
MS.gene062203.t1 AT4G38180 36.406 217 138 0 271 487 423 639 4.22e-49 182
MS.gene062203.t1 AT1G10240 25.273 550 319 12 15 479 62 604 2.80e-55 199
MS.gene062203.t1 AT1G10240 25.273 550 319 12 15 479 62 604 2.80e-55 199
MS.gene062203.t1 AT4G38170 36.296 270 165 5 273 539 190 455 2.44e-50 182
MS.gene062203.t1 AT4G38170 51.923 104 45 2 168 270 21 120 2.61e-29 122
MS.gene062203.t1 AT4G15090 31.271 291 188 4 261 549 392 672 9.60e-41 158
MS.gene062203.t1 AT4G15090 31.716 268 168 4 16 270 66 331 3.63e-37 147
MS.gene062203.t1 AT4G15090 31.271 291 188 4 261 549 392 672 9.60e-41 158
MS.gene062203.t1 AT4G15090 31.716 268 168 4 16 270 66 331 3.63e-37 147
MS.gene062203.t1 AT4G15090 31.271 291 188 4 261 549 392 672 9.60e-41 158
MS.gene062203.t1 AT4G15090 31.716 268 168 4 16 270 66 331 3.63e-37 147
MS.gene062203.t1 AT4G15090 31.271 291 188 4 261 549 392 672 9.60e-41 158
MS.gene062203.t1 AT4G15090 31.716 268 168 4 16 270 66 331 3.63e-37 147
MS.gene062203.t1 AT4G15090 31.271 291 188 4 261 549 392 672 9.60e-41 158
MS.gene062203.t1 AT4G15090 31.716 268 168 4 16 270 66 331 3.63e-37 147
MS.gene062203.t1 AT1G76320 33.083 266 166 5 12 270 8 268 9.11e-39 151
MS.gene062203.t1 AT1G76320 30.837 227 151 2 255 481 323 543 1.80e-33 136
MS.gene062203.t1 AT1G76320 33.083 266 166 5 12 270 8 268 1.42e-38 151
MS.gene062203.t1 AT1G76320 30.837 227 151 2 255 481 323 543 1.09e-33 137
MS.gene062203.t1 AT1G76320 33.083 266 166 5 12 270 8 268 1.53e-38 151
MS.gene062203.t1 AT1G76320 30.837 227 151 2 255 481 323 543 1.11e-33 137
MS.gene062203.t1 AT1G76320 33.083 266 166 5 12 270 8 268 1.53e-38 151
MS.gene062203.t1 AT1G76320 30.837 227 151 2 255 481 323 543 1.11e-33 137
MS.gene062203.t1 AT3G22170 31.915 282 153 7 9 270 78 340 6.28e-38 150
MS.gene062203.t1 AT3G22170 33.175 211 140 1 271 481 408 617 7.68e-37 147
MS.gene062203.t1 AT3G22170 31.915 282 153 7 9 270 78 340 6.28e-38 150
MS.gene062203.t1 AT3G22170 33.175 211 140 1 271 481 408 617 7.68e-37 147
MS.gene062203.t1 AT2G32250 28.826 281 192 3 264 544 298 570 4.86e-36 144
MS.gene062203.t1 AT2G32250 32.061 262 132 7 16 270 12 234 1.14e-29 125
MS.gene062203.t1 AT2G32250 28.826 281 192 3 264 544 339 611 4.89e-36 144
MS.gene062203.t1 AT2G32250 32.061 262 132 7 16 270 53 275 7.78e-30 125
MS.gene062203.t1 AT2G32250 28.826 281 192 3 264 544 298 570 5.15e-36 144
MS.gene062203.t1 AT2G32250 32.061 262 132 7 16 270 12 234 1.18e-29 124
MS.gene062203.t1 AT2G32250 28.826 281 192 3 264 544 339 611 5.82e-36 144
MS.gene062203.t1 AT2G32250 32.061 262 132 7 16 270 53 275 1.21e-29 125
MS.gene062203.t1 AT2G32250 28.826 281 192 3 264 544 339 611 5.82e-36 144
MS.gene062203.t1 AT2G32250 32.061 262 132 7 16 270 53 275 1.21e-29 125
MS.gene062203.t1 AT2G32250 28.826 281 192 3 264 544 339 611 5.82e-36 144
MS.gene062203.t1 AT2G32250 32.061 262 132 7 16 270 53 275 1.21e-29 125
MS.gene062203.t1 AT2G32250 28.826 281 192 3 264 544 339 611 6.12e-36 144
MS.gene062203.t1 AT2G32250 32.061 262 132 7 16 270 53 275 1.26e-29 124
MS.gene062203.t1 AT2G32250 28.826 281 192 3 264 544 339 611 6.12e-36 144
MS.gene062203.t1 AT2G32250 32.061 262 132 7 16 270 53 275 1.26e-29 124
MS.gene062203.t1 AT5G18960 30.337 267 181 2 273 539 522 783 1.23e-34 140
MS.gene062203.t1 AT5G18960 31.111 270 145 9 8 269 218 454 1.05e-29 125
MS.gene062203.t1 AT5G18960 30.337 267 181 2 273 539 522 783 1.23e-34 140
MS.gene062203.t1 AT5G18960 31.111 270 145 9 8 269 218 454 1.05e-29 125
MS.gene062203.t1 AT3G06250 29.963 267 182 2 273 539 498 759 1.37e-34 140
MS.gene062203.t1 AT3G06250 30.112 269 146 6 8 269 197 430 8.59e-31 128
MS.gene062203.t1 AT3G06250 29.963 267 182 2 273 539 498 759 1.37e-34 140
MS.gene062203.t1 AT3G06250 30.112 269 146 6 8 269 197 430 8.59e-31 128
MS.gene062203.t1 AT3G06250 29.963 267 182 2 273 539 498 759 1.37e-34 140
MS.gene062203.t1 AT3G06250 30.112 269 146 6 8 269 197 430 8.59e-31 128
MS.gene062203.t1 AT4G19990 31.579 228 155 1 271 497 290 517 2.27e-33 135
MS.gene062203.t1 AT4G19990 34.722 216 104 4 57 269 40 221 5.61e-29 122
MS.gene062203.t1 AT4G19990 31.579 228 155 1 271 497 347 574 2.39e-33 136
MS.gene062203.t1 AT4G19990 30.576 278 136 6 15 269 35 278 2.47e-30 127
MS.gene062203.t1 AT4G19990 31.579 228 155 1 271 497 347 574 2.39e-33 136
MS.gene062203.t1 AT4G19990 30.576 278 136 6 15 269 35 278 2.47e-30 127
MS.gene062203.t1 AT4G19990 31.579 228 155 1 271 497 347 574 2.94e-33 135
MS.gene062203.t1 AT4G19990 30.576 278 136 6 15 269 35 278 1.95e-30 127
MS.gene062203.t1 AT4G19990 31.579 228 155 1 271 497 347 574 2.94e-33 135
MS.gene062203.t1 AT4G19990 30.576 278 136 6 15 269 35 278 1.95e-30 127
MS.gene062203.t1 AT4G19990 31.579 228 155 1 271 497 347 574 3.18e-33 135
MS.gene062203.t1 AT4G19990 30.576 278 136 6 15 269 35 278 2.23e-30 127
MS.gene062203.t1 AT4G19990 31.579 228 155 1 271 497 361 588 3.69e-33 135
MS.gene062203.t1 AT4G19990 30.576 278 136 6 15 269 49 292 2.35e-30 127
MS.gene062203.t1 AT1G80010 30.961 281 161 8 12 269 106 376 8.62e-33 134
MS.gene062203.t1 AT1G80010 28.054 221 149 5 271 483 444 662 3.31e-20 95.5
MS.gene062203.t1 AT1G52520 26.937 271 177 6 9 269 93 352 4.83e-30 125
MS.gene062203.t1 AT1G52520 29.123 285 191 5 273 548 421 703 1.13e-27 118
MS.gene062203.t1 AT5G28530 25.253 396 249 13 15 385 69 442 4.31e-29 122
MS.gene062203.t1 AT5G28530 24.201 219 160 2 273 491 418 630 4.00e-16 82.4
MS.gene062203.t1 AT5G28530 25.253 396 249 13 15 385 69 442 4.53e-29 122
MS.gene062203.t1 AT5G28530 25.114 219 154 3 273 491 418 626 5.69e-16 82.0
MS.gene062203.t1 AT5G28530 25.253 396 249 13 15 385 69 442 4.53e-29 122
MS.gene062203.t1 AT5G28530 25.114 219 154 3 273 491 418 626 5.69e-16 82.0
MS.gene062203.t1 AT5G28530 23.782 513 341 16 15 491 69 567 1.10e-27 118
MS.gene062203.t1 AT5G28530 24.172 513 335 17 15 491 69 563 1.31e-27 118

Find 83 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGTTGCTACAATGTTTC+AGG 0.177913 1.1:+57889479 MS.gene062203:CDS
AACTCCAAATCCTTCTTTCT+TGG 0.222792 1.1:-57889151 None:intergenic
AAGGAGAATGAATGGCTTAA+AGG 0.244725 1.1:+57890150 MS.gene062203:CDS
ATTCATAGTTTGTGTGGATT+TGG 0.266789 1.1:+57890572 MS.gene062203:CDS
ATAGAATGATAAATTTCTTC+TGG 0.268818 1.1:+57889664 MS.gene062203:CDS
TTATAAAGATTATTCAATTT+AGG 0.268994 1.1:+57890478 MS.gene062203:CDS
AAGCAGGGAAGAGAAGTAAA+TGG 0.304863 1.1:+57889316 MS.gene062203:CDS
CGCAGATAGGCCACACTCTT+AGG 0.314469 1.1:-57889384 None:intergenic
AATTTATGGGATTGCTATGT+AGG 0.326606 1.1:+57890631 MS.gene062203:CDS
TAAGCTGATATCATCTGATT+TGG 0.331906 1.1:+57890869 MS.gene062203:CDS
TCAATCAAAGAGATTCAAAA+TGG 0.352627 1.1:+57891010 MS.gene062203:CDS
GGGAGTGGATCTCTGATAAT+TGG 0.364089 1.1:-57890959 None:intergenic
TTTGCCAAGAAAGAAGGATT+TGG 0.365412 1.1:+57889147 MS.gene062203:CDS
TTTCTTTCTTTAGTTTGTGA+TGG 0.379671 1.1:-57890980 None:intergenic
TTCTTCTGAAATTTCTAAGA+TGG 0.394077 1.1:-57889539 None:intergenic
TTCTTTCTTTAGTTTGTGAT+GGG 0.400586 1.1:-57890979 None:intergenic
AATGGTTGATTATAATTTGA+AGG 0.401452 1.1:+57890131 MS.gene062203:CDS
TAGAATACTTTGAAGAAGAA+TGG 0.402134 1.1:+57890100 MS.gene062203:intron
CGCTTTAAAATATACATGTC+TGG 0.419734 1.1:-57890696 None:intergenic
AAATGGCATATCATACTTGT+TGG 0.423697 1.1:-57889757 None:intergenic
AGGAGAATGAATGGCTTAAA+GGG 0.425174 1.1:+57890151 MS.gene062203:CDS
ATAATTTGAAGGAGAATGAA+TGG 0.429066 1.1:+57890142 MS.gene062203:CDS
TAGAATGATAAATTTCTTCT+GGG 0.433286 1.1:+57889665 MS.gene062203:CDS
GGTGGATGGAAGAGCAAGAT+TGG 0.436268 1.1:+57889686 MS.gene062203:CDS
AAAGTGCTTCTGTTGAAAAC+AGG 0.437656 1.1:-57890201 None:intergenic
GAAGGTACACATATAGTAAA+GGG 0.439216 1.1:+57889222 MS.gene062203:CDS
TCTTTAGTTTGTGATGGGAG+TGG 0.447487 1.1:-57890974 None:intergenic
TAAAGATTATTCAATTTAGG+AGG 0.447983 1.1:+57890481 MS.gene062203:CDS
AGAATACTTTGAAGAAGAAT+GGG 0.449212 1.1:+57890101 MS.gene062203:intron
TCACTTACTGTTTCAAAAGC+AGG 0.452498 1.1:+57889300 MS.gene062203:CDS
ATAAATTTCTTCTGGGTGGA+TGG 0.455401 1.1:+57889672 MS.gene062203:CDS
ATAAACAATGTTCATAATCA+TGG 0.455589 1.1:+57889351 MS.gene062203:CDS
ACATCGTTTGCCAAGAAAGA+AGG 0.463881 1.1:+57889141 MS.gene062203:CDS
GTTGAGAAGTTTGATGAAGA+AGG 0.472036 1.1:+57889444 MS.gene062203:CDS
GGACCAGAGTCTTCCTCTAC+AGG 0.475137 1.1:+57890762 MS.gene062203:CDS
AATCCGGTGAAGGGTGCAAA+TGG 0.486093 1.1:-57889774 None:intergenic
GCTGATATCATCTGATTTGG+AGG 0.486826 1.1:+57890872 MS.gene062203:CDS
AGGGTCTCAGTATAGATATA+AGG 0.487060 1.1:+57890521 MS.gene062203:CDS
AAGGATTTGGAGTTCGTGTT+CGG 0.488165 1.1:+57889160 MS.gene062203:CDS
AGAAGAATGGGAATGTATAA+TGG 0.489475 1.1:+57890113 MS.gene062203:CDS
AGCAGGGAAGAGAAGTAAAT+GGG 0.489503 1.1:+57889317 MS.gene062203:CDS
TGAAGGTACACATATAGTAA+AGG 0.494494 1.1:+57889221 MS.gene062203:CDS
GGTGCTGTGTTTATTGAAGA+TGG 0.495192 1.1:+57890741 MS.gene062203:CDS
ATGCCATTTGCACCCTTCAC+CGG 0.499873 1.1:+57889771 MS.gene062203:CDS
GATGAAGAAGGAGTACCTAC+AGG 0.503271 1.1:+57889456 MS.gene062203:CDS
AAAGATTATTCAATTTAGGA+GGG 0.507177 1.1:+57890482 MS.gene062203:CDS
GTAAAGGGTGAAAATGAAGA+AGG 0.507431 1.1:+57889237 MS.gene062203:CDS
TTGAAAATGATGATTCAATC+CGG 0.518170 1.1:-57889790 None:intergenic
TTTCTTATGAGACCGCAGAT+AGG 0.520274 1.1:-57889397 None:intergenic
AAAGTTGCTACAATGTTTCA+GGG 0.533512 1.1:+57889480 MS.gene062203:CDS
AGTTAAATTTGACAAGGCAA+TGG 0.535325 1.1:+57890317 MS.gene062203:CDS
TGCTTTACAATCAGTTCTTG+AGG 0.537334 1.1:-57889277 None:intergenic
TGTACGATATAAGAAAATCA+TGG 0.540635 1.1:+57890175 MS.gene062203:CDS
TAGAACATGGCTAGACGCAA+TGG 0.540817 1.1:+57889875 MS.gene062203:CDS
CACTTACTGTTTCAAAAGCA+GGG 0.542698 1.1:+57889301 MS.gene062203:CDS
TCAAAGAGATTCAAAATGGA+AGG 0.546075 1.1:+57891014 MS.gene062203:CDS
AGAAGAAGAAATCTTGATGT+GGG 0.546130 1.1:+57889555 MS.gene062203:CDS
ATGATGATTCAATCCGGTGA+AGG 0.546228 1.1:-57889784 None:intergenic
ATTGCTATGTAGGCATATCT+TGG 0.547174 1.1:+57890641 MS.gene062203:CDS
TAAAGGGTGAAAATGAAGAA+GGG 0.554329 1.1:+57889238 MS.gene062203:CDS
CAGAAGAAGAAATCTTGATG+TGG 0.556138 1.1:+57889554 MS.gene062203:CDS
AGACACATTCATAGTTTGTG+TGG 0.560120 1.1:+57890566 MS.gene062203:CDS
CAATGTTCATAATCATGGAA+TGG 0.563943 1.1:+57889356 MS.gene062203:CDS
AGAACATGGCTAGACGCAAT+GGG 0.566082 1.1:+57889876 MS.gene062203:CDS
ATTGTAGCAACTTTCCCTGT+AGG 0.569258 1.1:-57889471 None:intergenic
AGTTGATGAGTTTCCTGTAG+AGG 0.572088 1.1:-57890775 None:intergenic
TTGTGTGGATTTGGAGACAA+AGG 0.575494 1.1:+57890581 MS.gene062203:CDS
TTGAGTGGTTGTTTAGAACA+TGG 0.580129 1.1:+57889862 MS.gene062203:CDS
CCTTTGTGTAGTGTTCATGC+CGG 0.583834 1.1:-57890229 None:intergenic
AATGATAAATTTCTTCTGGG+TGG 0.588712 1.1:+57889668 MS.gene062203:CDS
TGATGATTCAATCCGGTGAA+GGG 0.589411 1.1:-57889783 None:intergenic
ATGTTTGTATGCGCTAATGA+AGG 0.600535 1.1:+57889204 MS.gene062203:CDS
AGACTCAGAAGACGTTTGAG+TGG 0.616471 1.1:+57889847 MS.gene062203:CDS
TTTCCTGTAGAGGAAGACTC+TGG 0.627574 1.1:-57890765 None:intergenic
ATGAAGAAGGAGTACCTACA+GGG 0.636491 1.1:+57889457 MS.gene062203:CDS
CTTCATCAAACTTCTCAACG+AGG 0.637235 1.1:-57889440 None:intergenic
CTAAGAGTGTGGCCTATCTG+CGG 0.648365 1.1:+57889385 MS.gene062203:CDS
GTACATGGATAATGAGTGTG+TGG 0.666454 1.1:+57889086 None:intergenic
TGGACAAAGGATGCTAACAA+AGG 0.673725 1.1:+57890720 MS.gene062203:CDS
AATGGTTAGTCCTAAGAGTG+TGG 0.677899 1.1:+57889374 MS.gene062203:CDS
ACATGGCTAGACGCAATGGG+TGG 0.716265 1.1:+57889879 MS.gene062203:CDS
CCGGCATGAACACTACACAA+AGG 0.746468 1.1:+57890229 MS.gene062203:CDS
GTGTGTGGAAAATTCCACTG+CGG 0.854331 1.1:+57889101 MS.gene062203:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAAGATTATTCAATTT+AGG + chr1.1:57890478-57890497 MS.gene062203:CDS 10.0%
!! ATTAACAAAAGAATCAAAAA+AGG - chr1.1:57890271-57890290 None:intergenic 15.0%
!! TGTATTGCATAAAAAAAATT+GGG - chr1.1:57889630-57889649 None:intergenic 15.0%
!! TTGTATTGCATAAAAAAAAT+TGG - chr1.1:57889631-57889650 None:intergenic 15.0%
!!! ATATATACAAGAAACATTTT+TGG + chr1.1:57890438-57890457 MS.gene062203:CDS 15.0%
!!! TATATACAAGAAACATTTTT+GGG + chr1.1:57890439-57890458 MS.gene062203:CDS 15.0%
!! AAAGATTATTCAATTTAGGA+GGG + chr1.1:57890482-57890501 MS.gene062203:CDS 20.0%
!! AATGGTTGATTATAATTTGA+AGG + chr1.1:57890131-57890150 MS.gene062203:CDS 20.0%
!! ATAAACAATGTTCATAATCA+TGG + chr1.1:57889351-57889370 MS.gene062203:CDS 20.0%
!! ATAGAATGATAAATTTCTTC+TGG + chr1.1:57889664-57889683 MS.gene062203:CDS 20.0%
!! TAAAGATTATTCAATTTAGG+AGG + chr1.1:57890481-57890500 MS.gene062203:CDS 20.0%
!! TAGAATGATAAATTTCTTCT+GGG + chr1.1:57889665-57889684 MS.gene062203:CDS 20.0%
!!! ATACAAAAAAGCTTTGATAA+TGG + chr1.1:57890899-57890918 MS.gene062203:CDS 20.0%
!!! CATTTTCAATCTATCTTATT+TGG + chr1.1:57889804-57889823 MS.gene062203:CDS 20.0%
!!! TTTTGTAGTTAAATTTGACA+AGG + chr1.1:57890311-57890330 MS.gene062203:CDS 20.0%
! AATAATAACAGATCAAGACT+TGG + chr1.1:57889917-57889936 MS.gene062203:intron 25.0%
! AGTTGTTAAGTCAAAAATTG+AGG + chr1.1:57890401-57890420 MS.gene062203:CDS 25.0%
! ATAATTTGAAGGAGAATGAA+TGG + chr1.1:57890142-57890161 MS.gene062203:CDS 25.0%
! TCAATCAAAGAGATTCAAAA+TGG + chr1.1:57891010-57891029 MS.gene062203:CDS 25.0%
! TGTACGATATAAGAAAATCA+TGG + chr1.1:57890175-57890194 MS.gene062203:CDS 25.0%
! TTGAAAATGATGATTCAATC+CGG - chr1.1:57889793-57889812 None:intergenic 25.0%
!! AGAATACTTTGAAGAAGAAT+GGG + chr1.1:57890101-57890120 MS.gene062203:intron 25.0%
!! TAGAATACTTTGAAGAAGAA+TGG + chr1.1:57890100-57890119 MS.gene062203:intron 25.0%
!! TCTTCAAAGTATTCTATAGA+TGG - chr1.1:57890096-57890115 None:intergenic 25.0%
!! TGAATTTTTGTGGTATATGT+GGG - chr1.1:57890034-57890053 None:intergenic 25.0%
!! TTGAATTTTTGTGGTATATG+TGG - chr1.1:57890035-57890054 None:intergenic 25.0%
!!! AAGATAATGCTTTTTCTAGT+CGG + chr1.1:57889505-57889524 MS.gene062203:CDS 25.0%
!!! ACATGTATATTTTAAAGCGT+TGG + chr1.1:57890700-57890719 MS.gene062203:CDS 25.0%
!!! TTCTTCTGAAATTTCTAAGA+TGG - chr1.1:57889542-57889561 None:intergenic 25.0%
!!! TTCTTTCTTTAGTTTGTGAT+GGG - chr1.1:57890982-57891001 None:intergenic 25.0%
!!! TTTCTTTCTTTAGTTTGTGA+TGG - chr1.1:57890983-57891002 None:intergenic 25.0%
AAAGTTGCTACAATGTTTCA+GGG + chr1.1:57889480-57889499 MS.gene062203:CDS 30.0%
AAATGGCATATCATACTTGT+TGG - chr1.1:57889760-57889779 None:intergenic 30.0%
AATGATAAATTTCTTCTGGG+TGG + chr1.1:57889668-57889687 MS.gene062203:CDS 30.0%
AATTTATGGGATTGCTATGT+AGG + chr1.1:57890631-57890650 MS.gene062203:CDS 30.0%
AGAAGAAGAAATCTTGATGT+GGG + chr1.1:57889555-57889574 MS.gene062203:CDS 30.0%
AGAAGAATGGGAATGTATAA+TGG + chr1.1:57890113-57890132 MS.gene062203:CDS 30.0%
AGGGAAAAACTTGAAAAAGA+AGG + chr1.1:57890501-57890520 MS.gene062203:CDS 30.0%
AGTTAAATTTGACAAGGCAA+TGG + chr1.1:57890317-57890336 MS.gene062203:CDS 30.0%
ATCCCATAAATTGAAAAAGC+TGG - chr1.1:57890623-57890642 None:intergenic 30.0%
CAATGTTCATAATCATGGAA+TGG + chr1.1:57889356-57889375 MS.gene062203:CDS 30.0%
GGGAAAAACTTGAAAAAGAA+GGG + chr1.1:57890502-57890521 MS.gene062203:CDS 30.0%
TAAAGGGTGAAAATGAAGAA+GGG + chr1.1:57889238-57889257 MS.gene062203:CDS 30.0%
TAAGCTGATATCATCTGATT+TGG + chr1.1:57890869-57890888 MS.gene062203:CDS 30.0%
TCAAAGAGATTCAAAATGGA+AGG + chr1.1:57891014-57891033 MS.gene062203:CDS 30.0%
TGATCTGTTATTATTGACAC+TGG - chr1.1:57889912-57889931 None:intergenic 30.0%
TTATGTGCCATAAACATAAC+CGG - chr1.1:57889986-57890005 None:intergenic 30.0%
! ATTCATAGTTTGTGTGGATT+TGG + chr1.1:57890572-57890591 MS.gene062203:CDS 30.0%
! GAAGGTACACATATAGTAAA+GGG + chr1.1:57889222-57889241 MS.gene062203:CDS 30.0%
! GCTTGAAAGTTGAATTTTTG+TGG - chr1.1:57890044-57890063 None:intergenic 30.0%
! TGAAGGTACACATATAGTAA+AGG + chr1.1:57889221-57889240 MS.gene062203:CDS 30.0%
!! CGCTTTAAAATATACATGTC+TGG - chr1.1:57890699-57890718 None:intergenic 30.0%
!!! AGATAATGCTTTTTCTAGTC+GGG + chr1.1:57889506-57889525 MS.gene062203:CDS 30.0%
!!! TATTTTAAAGCGTTGGACAA+AGG + chr1.1:57890707-57890726 MS.gene062203:CDS 30.0%
!!! TGCCAGCTTTTTCAATTTAT+GGG + chr1.1:57890618-57890637 MS.gene062203:CDS 30.0%
AACTCCAAATCCTTCTTTCT+TGG - chr1.1:57889154-57889173 None:intergenic 35.0%
AAGGAGAATGAATGGCTTAA+AGG + chr1.1:57890150-57890169 MS.gene062203:CDS 35.0%
AGGAGAATGAATGGCTTAAA+GGG + chr1.1:57890151-57890170 MS.gene062203:CDS 35.0%
AGGGTCTCAGTATAGATATA+AGG + chr1.1:57890521-57890540 MS.gene062203:CDS 35.0%
ATAAATTTCTTCTGGGTGGA+TGG + chr1.1:57889672-57889691 MS.gene062203:CDS 35.0%
ATGTTTGTATGCGCTAATGA+AGG + chr1.1:57889204-57889223 MS.gene062203:CDS 35.0%
ATTGCTATGTAGGCATATCT+TGG + chr1.1:57890641-57890660 MS.gene062203:CDS 35.0%
CACTTACTGTTTCAAAAGCA+GGG + chr1.1:57889301-57889320 MS.gene062203:CDS 35.0%
CAGAAGAAGAAATCTTGATG+TGG + chr1.1:57889554-57889573 MS.gene062203:CDS 35.0%
CTGTGAAAAACAAAGAAGAG+AGG + chr1.1:57890347-57890366 MS.gene062203:CDS 35.0%
GAAAGTTGCTACAATGTTTC+AGG + chr1.1:57889479-57889498 MS.gene062203:CDS 35.0%
GTAAAGGGTGAAAATGAAGA+AGG + chr1.1:57889237-57889256 MS.gene062203:CDS 35.0%
GTTGAGAAGTTTGATGAAGA+AGG + chr1.1:57889444-57889463 MS.gene062203:CDS 35.0%
TCACTTACTGTTTCAAAAGC+AGG + chr1.1:57889300-57889319 MS.gene062203:CDS 35.0%
TGCTTTACAATCAGTTCTTG+AGG - chr1.1:57889280-57889299 None:intergenic 35.0%
TTTGCCAAGAAAGAAGGATT+TGG + chr1.1:57889147-57889166 MS.gene062203:CDS 35.0%
! AAAGTGCTTCTGTTGAAAAC+AGG - chr1.1:57890204-57890223 None:intergenic 35.0%
! AGACACATTCATAGTTTGTG+TGG + chr1.1:57890566-57890585 MS.gene062203:CDS 35.0%
! GAAGAGAGGATTTTGAATCA+AGG + chr1.1:57890361-57890380 MS.gene062203:CDS 35.0%
! TTGAGTGGTTGTTTAGAACA+TGG + chr1.1:57889862-57889881 MS.gene062203:CDS 35.0%
!!! AACAGAAGCACTTTTTTTGC+CGG + chr1.1:57890210-57890229 MS.gene062203:CDS 35.0%
!!! CTGCCAGCTTTTTCAATTTA+TGG + chr1.1:57890617-57890636 MS.gene062203:CDS 35.0%
AAGCAGGGAAGAGAAGTAAA+TGG + chr1.1:57889316-57889335 MS.gene062203:CDS 40.0%
ACATCGTTTGCCAAGAAAGA+AGG + chr1.1:57889141-57889160 MS.gene062203:CDS 40.0%
AGCAGGGAAGAGAAGTAAAT+GGG + chr1.1:57889317-57889336 MS.gene062203:CDS 40.0%
ATGATGATTCAATCCGGTGA+AGG - chr1.1:57889787-57889806 None:intergenic 40.0%
ATGTGGGAAAACATTGCCTA+TGG - chr1.1:57889955-57889974 None:intergenic 40.0%
ATTGTAGCAACTTTCCCTGT+AGG - chr1.1:57889474-57889493 None:intergenic 40.0%
CTTCATCAAACTTCTCAACG+AGG - chr1.1:57889443-57889462 None:intergenic 40.0%
TGATGATTCAATCCGGTGAA+GGG - chr1.1:57889786-57889805 None:intergenic 40.0%
TGGACAAAGGATGCTAACAA+AGG + chr1.1:57890720-57890739 MS.gene062203:CDS 40.0%
TTGTGTGGATTTGGAGACAA+AGG + chr1.1:57890581-57890600 MS.gene062203:CDS 40.0%
TTTCTTATGAGACCGCAGAT+AGG - chr1.1:57889400-57889419 None:intergenic 40.0%
! AAGGATTTGGAGTTCGTGTT+CGG + chr1.1:57889160-57889179 MS.gene062203:CDS 40.0%
! AATGGTTAGTCCTAAGAGTG+TGG + chr1.1:57889374-57889393 MS.gene062203:CDS 40.0%
! GAATTCTTTTACATCCGCAG+TGG - chr1.1:57889118-57889137 None:intergenic 40.0%
! GGTGCTGTGTTTATTGAAGA+TGG + chr1.1:57890741-57890760 MS.gene062203:CDS 40.0%
! TCAGATTTTGCTGCAAGATC+AGG - chr1.1:57890840-57890859 None:intergenic 40.0%
!! AGTTGATGAGTTTCCTGTAG+AGG - chr1.1:57890778-57890797 None:intergenic 40.0%
!! ATGAAGAAGGAGTACCTACA+GGG + chr1.1:57889457-57889476 MS.gene062203:CDS 40.0%
!! GCTGATATCATCTGATTTGG+AGG + chr1.1:57890872-57890891 MS.gene062203:CDS 40.0%
!! TCTTTAGTTTGTGATGGGAG+TGG - chr1.1:57890977-57890996 None:intergenic 40.0%
AGAACATGGCTAGACGCAAT+GGG + chr1.1:57889876-57889895 MS.gene062203:CDS 45.0%
AGACTCAGAAGACGTTTGAG+TGG + chr1.1:57889847-57889866 MS.gene062203:CDS 45.0%
ATAACCGGTGACGAGTATGT+GGG - chr1.1:57889971-57889990 None:intergenic 45.0%
CCTTTGTGTAGTGTTCATGC+CGG - chr1.1:57890232-57890251 None:intergenic 45.0%
GGGAGTGGATCTCTGATAAT+TGG - chr1.1:57890962-57890981 None:intergenic 45.0%
GTGTGTGGAAAATTCCACTG+CGG + chr1.1:57889101-57889120 MS.gene062203:CDS 45.0%
TAGAACATGGCTAGACGCAA+TGG + chr1.1:57889875-57889894 MS.gene062203:CDS 45.0%
TTGGCAATGAAAGCTGCCAT+AGG + chr1.1:57889936-57889955 MS.gene062203:intron 45.0%
TTTCCTGTAGAGGAAGACTC+TGG - chr1.1:57890768-57890787 None:intergenic 45.0%
! CTCGTCACCGGTTATGTTTA+TGG + chr1.1:57889976-57889995 MS.gene062203:intron 45.0%
! TTTTCCCACATACTCGTCAC+CGG + chr1.1:57889964-57889983 MS.gene062203:intron 45.0%
!! CTTTTTCTAGTCGGGATTGC+TGG + chr1.1:57889514-57889533 MS.gene062203:CDS 45.0%
!! GATGAAGAAGGAGTACCTAC+AGG + chr1.1:57889456-57889475 MS.gene062203:CDS 45.0%
CATAACCGGTGACGAGTATG+TGG - chr1.1:57889972-57889991 None:intergenic 50.0%
CCGGCATGAACACTACACAA+AGG + chr1.1:57890229-57890248 MS.gene062203:CDS 50.0%
GGTGGATGGAAGAGCAAGAT+TGG + chr1.1:57889686-57889705 MS.gene062203:CDS 50.0%
! AATCCGGTGAAGGGTGCAAA+TGG - chr1.1:57889777-57889796 None:intergenic 50.0%
! ATGCCATTTGCACCCTTCAC+CGG + chr1.1:57889771-57889790 MS.gene062203:CDS 50.0%
! CTAAGAGTGTGGCCTATCTG+CGG + chr1.1:57889385-57889404 MS.gene062203:CDS 50.0%
ACATGGCTAGACGCAATGGG+TGG + chr1.1:57889879-57889898 MS.gene062203:CDS 55.0%
CGCAGATAGGCCACACTCTT+AGG - chr1.1:57889387-57889406 None:intergenic 55.0%
GGACCAGAGTCTTCCTCTAC+AGG + chr1.1:57890762-57890781 MS.gene062203:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 57889090 57891052 57889090 ID=MS.gene062203
chr1.1 mRNA 57889090 57891052 57889090 ID=MS.gene062203.t1;Parent=MS.gene062203
chr1.1 exon 57889090 57889900 57889090 ID=MS.gene062203.t1.exon1;Parent=MS.gene062203.t1
chr1.1 CDS 57889090 57889900 57889090 ID=cds.MS.gene062203.t1;Parent=MS.gene062203.t1
chr1.1 exon 57890103 57891052 57890103 ID=MS.gene062203.t1.exon2;Parent=MS.gene062203.t1
chr1.1 CDS 57890103 57891052 57890103 ID=cds.MS.gene062203.t1;Parent=MS.gene062203.t1
Gene Sequence

>MS.gene062203

ATGGATAATGAGTGTGTGGAAAATTCCACTGCGGATGTAAAAGAATTCTACACATCGTTTGCCAAGAAAGAAGGATTTGGAGTTCGTGTTCGGTCTACTAAGCAAAATTTTTGCATGTTTGTATGCGCTAATGAAGGTACACATATAGTAAAGGGTGAAAATGAAGAAGGGAAGAGAAAGCGTTCAACCTCAAGAACTGATTGTAAAGCATCACTTACTGTTTCAAAAGCAGGGAAGAGAAGTAAATGGGTTATAAAAAGCATAAACAATGTTCATAATCATGGAATGGTTAGTCCTAAGAGTGTGGCCTATCTGCGGTCTCATAAGAAAATGACTGCAGCAACTAAAAGCCTCGTTGAGAAGTTTGATGAAGAAGGAGTACCTACAGGGAAAGTTGCTACAATGTTTCAGGGTGAAGATAATGCTTTTTCTAGTCGGGATTGCTGGAACCATCTTAGAAATTTCAGAAGAAGAAATCTTGATGTGGGAGATGCTCAAGCTGTCTTTAAATTTTGCAAGAAAAAACAAGTTGAGAATCCCAATTTTTTTTATGCAATACAATGTGATGATGAAGATAGAATGATAAATTTCTTCTGGGTGGATGGAAGAGCAAGATTGGCATATCAATTTTTTTGTGATGTTATTACATTTGATACAACATATAAAACCAACAAGTATGATATGCCATTTGCACCCTTCACCGGATTGAATCATCATTTTCAATCTATCTTATTTGGATGTGCTTTGTTGCAAGATGAGACTCAGAAGACGTTTGAGTGGTTGTTTAGAACATGGCTAGACGCAATGGGTGGTAAATATCCAGTGTCAATAATAACAGATCAAGACTTGGCAATGAAAGCTGCCATAGGCAATGTTTTCCCACATACTCGTCACCGGTTATGTTTATGGCACATAAAAAAAAAAATTTGCTGAGAAGCTTTCCCACATATACCACAAAAATTCAACTTTCAAGCGTAAATTGAAATCTTGTATTCGTGATTCGCCATCTATAGAATACTTTGAAGAAGAATGGGAATGTATAATGGTTGATTATAATTTGAAGGAGAATGAATGGCTTAAAGGGTTGTACGATATAAGAAAATCATGGATTCCTGTTTTCAACAGAAGCACTTTTTTTGCCGGCATGAACACTACACAAAGGAGTGAGAGTATTAATGCCTTTTTTGATTCTTTTGTTAATTCTTCAACAACACTACAAGATTTTGTAGTTAAATTTGACAAGGCAATGGATAGTCGCTGTGAAAAACAAAGAAGAGAGGATTTTGAATCAAGGCATCGATTGCGACTCGTAGTTGTTAAGTCAAAAATTGAGGAGCATGCAGCATCAATATATACAAGAAACATTTTTGGGAAGTTTCACAATGAGTTTATAAAGATTATTCAATTTAGGAGGGAAAAACTTGAAAAAGAAGGGTCTCAGTATAGATATAAGGTATCTAATGATTATGACTCGAAAGACACATTCATAGTTTGTGTGGATTTGGAGACAAAGGTTGCTACTTGTGACTGCCAGCTTTTTCAATTTATGGGATTGCTATGTAGGCATATCTTGGTGATTTTTCATGCAAAAAATGTTGTAGAAATTCCAGACATGTATATTTTAAAGCGTTGGACAAAGGATGCTAACAAAGGTGCTGTGTTTATTGAAGATGGACCAGAGTCTTCCTCTACAGGAAACTCATCAACTTTGCGAAGTTTACATGTACACAAACAAGCAAGTTTGTTACCTGATCTTGCAGCAAAATCTGAGAAAATATATAAGCTGATATCATCTGATTTGGAGGAAACATACAAAAAAGCTTTGATAATGGAAGCTGAATTAGACAATGAGAGCGACATAATTCAGAACCAATTATCAGAGATCCACTCCCATCACAAACTAAAGAAAGAAAAAAAGATTCAATCAAAGAGATTCAAAATGGAAGGATCAAAAGCAGTCTAG
Protein sequence

>MS.gene062203.t1

MDNECVENSTADVKEFYTSFAKKEGFGVRVRSTKQNFCMFVCANEGTHIVKGENEEGKRKRSTSRTDCKASLTVSKAGKRSKWVIKSINNVHNHGMVSPKSVAYLRSHKKMTAATKSLVEKFDEEGVPTGKVATMFQGEDNAFSSRDCWNHLRNFRRRNLDVGDAQAVFKFCKKKQVENPNFFYAIQCDDEDRMINFFWVDGRARLAYQFFCDVITFDTTYKTNKYDMPFAPFTGLNHHFQSILFGCALLQDETQKTFEWLFRTWLDAMGEYFEEEWECIMVDYNLKENEWLKGLYDIRKSWIPVFNRSTFFAGMNTTQRSESINAFFDSFVNSSTTLQDFVVKFDKAMDSRCEKQRREDFESRHRLRLVVVKSKIEEHAASIYTRNIFGKFHNEFIKIIQFRREKLEKEGSQYRYKVSNDYDSKDTFIVCVDLETKVATCDCQLFQFMGLLCRHILVIFHAKNVVEIPDMYILKRWTKDANKGAVFIEDGPESSSTGNSSTLRSLHVHKQASLLPDLAAKSEKIYKLISSDLEETYKKALIMEAELDNESDIIQNQLSEIHSHHKLKKEKKIQSKRFKMEGSKAV