Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062317.t1 | XP_003612426.2 | 64.7 | 561 | 48 | 7 | 1 | 432 | 1 | 540 | 6.00E-175 | 624.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062317.t1 | Q940Y3 | 44.2 | 403 | 165 | 11 | 67 | 432 | 343 | 722 | 5.7e-73 | 276.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062317.t1 | G7K2M1 | 64.7 | 561 | 48 | 7 | 1 | 432 | 1 | 540 | 4.3e-175 | 624.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene062317.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062317.t1 | MTR_5g024920 | 83.439 | 314 | 20 | 2 | 148 | 444 | 329 | 627 | 0.0 | 531 |
| MS.gene062317.t1 | MTR_5g024920 | 79.283 | 251 | 16 | 1 | 432 | 646 | 366 | 616 | 2.92e-132 | 403 |
| MS.gene062317.t1 | MTR_5g024920 | 81.379 | 145 | 12 | 3 | 13 | 148 | 88 | 226 | 2.57e-59 | 211 |
| MS.gene062317.t1 | MTR_5g024920 | 85.762 | 302 | 11 | 2 | 148 | 432 | 254 | 540 | 2.15e-180 | 525 |
| MS.gene062317.t1 | MTR_5g024920 | 79.283 | 251 | 16 | 1 | 432 | 646 | 291 | 541 | 4.83e-133 | 404 |
| MS.gene062317.t1 | MTR_5g024920 | 80.255 | 157 | 16 | 3 | 1 | 148 | 1 | 151 | 1.54e-65 | 227 |
| MS.gene062317.t1 | MTR_3g116200 | 46.398 | 347 | 116 | 9 | 116 | 435 | 7 | 310 | 1.52e-83 | 266 |
| MS.gene062317.t1 | MTR_3g116200 | 52.066 | 242 | 71 | 3 | 446 | 645 | 69 | 307 | 6.46e-72 | 235 |
| MS.gene062317.t1 | MTR_3g116200 | 46.802 | 344 | 113 | 9 | 116 | 432 | 7 | 307 | 1.81e-82 | 265 |
| MS.gene062317.t1 | MTR_3g116200 | 52.263 | 243 | 71 | 3 | 446 | 646 | 69 | 308 | 8.17e-72 | 237 |
| MS.gene062317.t1 | MTR_1g033910 | 68.421 | 76 | 11 | 2 | 1 | 69 | 1 | 70 | 2.09e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062317.t1 | AT2G17410 | 58.015 | 262 | 68 | 6 | 188 | 432 | 480 | 716 | 1.04e-92 | 304 |
| MS.gene062317.t1 | AT2G17410 | 52.874 | 261 | 67 | 5 | 427 | 646 | 472 | 717 | 2.17e-80 | 271 |
| MS.gene062317.t1 | AT2G17410 | 57.358 | 265 | 71 | 5 | 188 | 432 | 480 | 722 | 1.12e-91 | 301 |
| MS.gene062317.t1 | AT2G17410 | 54.475 | 257 | 75 | 5 | 427 | 646 | 472 | 723 | 1.37e-81 | 274 |
| MS.gene062317.t1 | AT2G17410 | 57.358 | 265 | 71 | 5 | 188 | 432 | 480 | 722 | 1.12e-91 | 301 |
| MS.gene062317.t1 | AT2G17410 | 54.475 | 257 | 75 | 5 | 427 | 646 | 472 | 723 | 1.37e-81 | 274 |
| MS.gene062317.t1 | AT1G76510 | 50.391 | 256 | 85 | 4 | 199 | 432 | 137 | 372 | 5.17e-74 | 245 |
| MS.gene062317.t1 | AT1G76510 | 45.267 | 243 | 85 | 4 | 446 | 646 | 137 | 373 | 5.13e-60 | 207 |
| MS.gene062317.t1 | AT1G76510 | 50.391 | 256 | 85 | 4 | 199 | 432 | 137 | 372 | 5.17e-74 | 245 |
| MS.gene062317.t1 | AT1G76510 | 45.267 | 243 | 85 | 4 | 446 | 646 | 137 | 373 | 5.13e-60 | 207 |
| MS.gene062317.t1 | AT1G76510 | 50.391 | 256 | 85 | 4 | 199 | 432 | 137 | 372 | 5.17e-74 | 245 |
| MS.gene062317.t1 | AT1G76510 | 45.267 | 243 | 85 | 4 | 446 | 646 | 137 | 373 | 5.13e-60 | 207 |
| MS.gene062317.t1 | AT1G76510 | 46.237 | 279 | 85 | 5 | 199 | 432 | 137 | 395 | 2.71e-68 | 231 |
| MS.gene062317.t1 | AT1G76510 | 41.353 | 266 | 85 | 5 | 446 | 646 | 137 | 396 | 2.33e-54 | 194 |
| MS.gene062317.t1 | AT1G20910 | 47.656 | 256 | 92 | 4 | 199 | 432 | 101 | 336 | 2.62e-67 | 226 |
| MS.gene062317.t1 | AT1G20910 | 45.455 | 242 | 86 | 3 | 446 | 646 | 101 | 337 | 3.82e-57 | 199 |
| MS.gene062317.t1 | AT1G20910 | 47.656 | 256 | 92 | 4 | 199 | 432 | 101 | 336 | 3.01e-67 | 226 |
| MS.gene062317.t1 | AT1G20910 | 45.455 | 242 | 86 | 3 | 446 | 646 | 101 | 337 | 4.12e-57 | 198 |
Find 160 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCATTCTCCATAAAATT+TGG | 0.109421 | 5.1:-73714639 | None:intergenic |
| AAGCCATTCTCCATAAAATT+TGG | 0.109421 | 5.1:-73719098 | None:intergenic |
| AATCTTGCTGGTTTGGAATT+AGG | 0.186518 | 5.1:+73714089 | MS.gene062317:CDS |
| CCACAGTTTCCTGGACTTTC+CGG | 0.219944 | 5.1:+73720671 | MS.gene062317:CDS |
| CCACAGTTTCCTGGACTTTC+CGG | 0.221520 | 5.1:+73716421 | MS.gene062317:CDS |
| AGGAGCTTGAAAACTTCTTT+AGG | 0.247131 | 5.1:+73714591 | MS.gene062317:CDS |
| AGGAGCTTGAAAACTTCTTT+AGG | 0.247131 | 5.1:+73719050 | MS.gene062317:CDS |
| GTGTCAGATGATGTTAAAAT+TGG | 0.259184 | 5.1:+73714200 | MS.gene062317:CDS |
| AACATGTTCTGCTGCGAATC+CGG | 0.285848 | 5.1:-73714497 | None:intergenic |
| CTTCTTTAGGGAGAGGAGTA+TGG | 0.293766 | 5.1:+73714604 | MS.gene062317:CDS |
| GAAATATATGCTTTAGTTCC+TGG | 0.296044 | 5.1:+73718471 | MS.gene062317:CDS |
| GAAATATATGCTTTAGTTCC+TGG | 0.296044 | 5.1:+73722507 | MS.gene062317:CDS |
| ACGTAAGATCCCATCTTATA+TGG | 0.298413 | 5.1:+73718022 | MS.gene062317:CDS |
| GGACTTGCACCACAGTTTCC+TGG | 0.301953 | 5.1:+73720662 | MS.gene062317:intron |
| ACGTAAGAGCCCATCTTATA+TGG | 0.307472 | 5.1:+73722054 | MS.gene062317:CDS |
| TGGCACTCACAACGTCTTCT+TGG | 0.307906 | 5.1:+73717714 | MS.gene062317:CDS |
| TACGAAAGGCATAACATAAA+AGG | 0.323371 | 5.1:+73716758 | MS.gene062317:CDS |
| TATGAAAGGCATAACATAAA+AGG | 0.325509 | 5.1:+73721008 | MS.gene062317:CDS |
| TATTGATAATCTTGCTGGTT+TGG | 0.333193 | 5.1:+73714082 | MS.gene062317:CDS |
| GCCTGTGAATGTTGAAAATC+AGG | 0.345539 | 5.1:+73716817 | MS.gene062317:CDS |
| GCCTGTGAATGTTGAAAATC+AGG | 0.345539 | 5.1:+73721067 | MS.gene062317:CDS |
| GGAGCTTGAAAACTTCTTTA+GGG | 0.352045 | 5.1:+73714592 | MS.gene062317:CDS |
| GGAGCTTGAAAACTTCTTTA+GGG | 0.352045 | 5.1:+73719051 | MS.gene062317:CDS |
| AGCCATTCTCCATAAAATTT+GGG | 0.353493 | 5.1:-73714638 | None:intergenic |
| AGCCATTCTCCATAAAATTT+GGG | 0.353493 | 5.1:-73719097 | None:intergenic |
| ATTCCTGTCCTTGTATCATC+AGG | 0.357516 | 5.1:-73714404 | None:intergenic |
| TAAGATGGGCTCTTACGTTT+AGG | 0.359154 | 5.1:-73722049 | None:intergenic |
| GGACATGCACCACAGTTTCC+TGG | 0.366165 | 5.1:+73716412 | MS.gene062317:intron |
| CATAGGACCTTCTGCTGATT+GGG | 0.368858 | 5.1:+73718328 | MS.gene062317:CDS |
| CATAGGACCTTCTGCTGATT+GGG | 0.368858 | 5.1:+73722362 | MS.gene062317:CDS |
| CATAGGACCTTCTGCTGATT+GGG | 0.373243 | 5.1:+73718283 | MS.gene062317:CDS |
| CATAGGACCTTCTGCTGATT+GGG | 0.373243 | 5.1:+73722317 | MS.gene062317:intron |
| CAAAGTGGGTCAGGGTGTTC+CGG | 0.378330 | 5.1:+73713980 | MS.gene062317:CDS |
| ACATAGGACCTTCTGCTGAT+TGG | 0.380929 | 5.1:+73718282 | MS.gene062317:CDS |
| ACATAGGACCTTCTGCTGAT+TGG | 0.380929 | 5.1:+73718327 | MS.gene062317:CDS |
| ACATAGGACCTTCTGCTGAT+TGG | 0.380929 | 5.1:+73722316 | MS.gene062317:intron |
| ACATAGGACCTTCTGCTGAT+TGG | 0.380929 | 5.1:+73722361 | MS.gene062317:CDS |
| TGTCTTAACTGTTGTCTTGA+CGG | 0.381752 | 5.1:-73718074 | None:intergenic |
| GAAGTTTCCTCTACAGTAAC+CGG | 0.388879 | 5.1:-73714161 | None:intergenic |
| ATGATTATTGATAATCTTGC+TGG | 0.390384 | 5.1:+73714077 | MS.gene062317:CDS |
| TAAGATGGGATCTTACGTTT+AGG | 0.410079 | 5.1:-73718017 | None:intergenic |
| ACCTCCTCCCGCAGAAGGCC+AGG | 0.415357 | 5.1:-73722525 | None:intergenic |
| ACTGCATTATCCATATAAGA+TGG | 0.421547 | 5.1:-73722064 | None:intergenic |
| ACTGCATTATCCATATAAGA+TGG | 0.424030 | 5.1:-73718032 | None:intergenic |
| AGAAAACGACAAAGTGGGTC+AGG | 0.425358 | 5.1:+73713971 | MS.gene062317:CDS |
| ACCTCCTCCCGCAGAAGGCC+AGG | 0.425504 | 5.1:-73718489 | None:intergenic |
| TCACAACGTCTTCTTGGAAA+TGG | 0.433012 | 5.1:+73717720 | MS.gene062317:CDS |
| GGCCTTCTGCGGGAGGAGGT+TGG | 0.443652 | 5.1:+73722528 | MS.gene062317:CDS |
| TGTTCAAGATACCCTTCATT+CGG | 0.446726 | 5.1:+73714295 | MS.gene062317:CDS |
| ATACCTTCTGAAACAACCTT+GGG | 0.449374 | 5.1:-73714260 | None:intergenic |
| GATGCTGATCATTATTATGA+TGG | 0.450037 | 5.1:+73714527 | MS.gene062317:CDS |
| GATGCTGATCATTATTATGA+TGG | 0.450037 | 5.1:+73718986 | MS.gene062317:CDS |
| ATGGAGAGCTGTGATGAGAT+TGG | 0.450926 | 5.1:+73714787 | MS.gene062317:CDS |
| ATGGAGAGCTGTGATGAGAT+TGG | 0.450926 | 5.1:+73719246 | MS.gene062317:CDS |
| ACATGTTCTGCTGCGAATCC+GGG | 0.460181 | 5.1:-73714496 | None:intergenic |
| TTTAGTTCCTGGCCTTCTGC+GGG | 0.466389 | 5.1:+73718482 | MS.gene062317:CDS |
| TTTAGTTCCTGGCCTTCTGC+GGG | 0.466389 | 5.1:+73722518 | MS.gene062317:CDS |
| TCCTGGCCTTCTGCGGGAGG+AGG | 0.468253 | 5.1:+73722524 | MS.gene062317:CDS |
| TCCTGGCCTTCTGCGGGAGG+AGG | 0.479319 | 5.1:+73718488 | MS.gene062317:CDS |
| AGTTGGTGACCCTATCATAA+AGG | 0.479478 | 5.1:+73717746 | MS.gene062317:CDS |
| TTCTGCTGATTGGGTATATG+TGG | 0.487210 | 5.1:+73718292 | MS.gene062317:CDS |
| TTCTGCTGATTGGGTATATG+TGG | 0.487210 | 5.1:+73722326 | MS.gene062317:CDS |
| GATGCATCTTGAAGTTCAAC+CGG | 0.489348 | 5.1:+73714142 | MS.gene062317:CDS |
| TACAAAAGAAAACGACAAAG+TGG | 0.494694 | 5.1:+73713965 | MS.gene062317:CDS |
| TCACCTTCTCATAAAATGTC+CGG | 0.496177 | 5.1:-73716440 | None:intergenic |
| TCACCTTCTCATAAAATCTC+CGG | 0.500478 | 5.1:-73720690 | None:intergenic |
| AATACCTTCTGAAACAACCT+TGG | 0.501857 | 5.1:-73714261 | None:intergenic |
| TTGAAAACTTCTTTAGGGAG+AGG | 0.501970 | 5.1:+73714597 | MS.gene062317:CDS |
| TGGAGAGCTGTGATGAGATT+GGG | 0.502339 | 5.1:+73714788 | MS.gene062317:CDS |
| TGGAGAGCTGTGATGAGATT+GGG | 0.502339 | 5.1:+73719247 | MS.gene062317:CDS |
| TATTATGATGGAAATGAGTC+GGG | 0.503594 | 5.1:+73714539 | MS.gene062317:CDS |
| TATTATGATGGAAATGAGTC+GGG | 0.503594 | 5.1:+73718998 | MS.gene062317:CDS |
| GAAAATGAAAATTCAAAACT+AGG | 0.506491 | 5.1:+73714041 | MS.gene062317:CDS |
| TATGCCTTTCATAATCAAGA+AGG | 0.508041 | 5.1:-73720998 | None:intergenic |
| TCCTCTACATTAACATTCGC+CGG | 0.508778 | 5.1:-73713999 | None:intergenic |
| CTTTAGTTCCTGGCCTTCTG+CGG | 0.509492 | 5.1:+73718481 | MS.gene062317:CDS |
| CTTTAGTTCCTGGCCTTCTG+CGG | 0.509492 | 5.1:+73722517 | MS.gene062317:CDS |
| TTGAAAACTTCTTTAGGGAG+AGG | 0.509895 | 5.1:+73719056 | MS.gene062317:CDS |
| TGTCAGATGATGTTAAAATT+GGG | 0.511487 | 5.1:+73714201 | MS.gene062317:CDS |
| CAGCCGCCTCAACCGAATGA+AGG | 0.516023 | 5.1:-73714307 | None:intergenic |
| TCATATGTTGGACACAGCTA+AGG | 0.516542 | 5.1:+73714334 | MS.gene062317:CDS |
| TTATTATGATGGAAATGAGT+CGG | 0.516599 | 5.1:+73714538 | MS.gene062317:CDS |
| TTATTATGATGGAAATGAGT+CGG | 0.516599 | 5.1:+73718997 | MS.gene062317:CDS |
| AGATACCCTTCATTCGGTTG+AGG | 0.521109 | 5.1:+73714301 | MS.gene062317:CDS |
| ATGTAAGTTGTGGCGGAGTG+TGG | 0.521969 | 5.1:+73715607 | MS.gene062317:CDS |
| ATGTAAGTTGTGGCGGAGTG+TGG | 0.521969 | 5.1:+73719901 | MS.gene062317:CDS |
| CTTCTTTAGGGAGAGGAGCA+TGG | 0.528705 | 5.1:+73719063 | MS.gene062317:CDS |
| AGGCCCTTCTTGATTATGAA+AGG | 0.535189 | 5.1:+73720994 | MS.gene062317:intron |
| TATGCCTTTCGTAATCAAGA+AGG | 0.542010 | 5.1:-73716748 | None:intergenic |
| GTCCTTGTATCATCAGGGGC+AGG | 0.543099 | 5.1:-73714398 | None:intergenic |
| CTCCAACCTCCTCCCGCAGA+AGG | 0.545798 | 5.1:-73722530 | None:intergenic |
| AGTTCCTGGCCTTCTGCGGG+AGG | 0.546177 | 5.1:+73718485 | MS.gene062317:CDS |
| AGTTCCTGGCCTTCTGCGGG+AGG | 0.546177 | 5.1:+73722521 | MS.gene062317:CDS |
| TTAGAAGTTGAAAGTAAGGA+CGG | 0.547589 | 5.1:+73714437 | MS.gene062317:CDS |
| AAACCCAAGGTTGTTTCAGA+AGG | 0.551480 | 5.1:+73714257 | MS.gene062317:CDS |
| ATAAAATCTCCGGAAAGTCC+AGG | 0.551594 | 5.1:-73720680 | None:intergenic |
| CTGCATTATCCATATAAGAT+GGG | 0.552830 | 5.1:-73718031 | None:intergenic |
| CTGCATTATCCATATAAGAT+GGG | 0.554084 | 5.1:-73722063 | None:intergenic |
| AGTTCAACCGGTTACTGTAG+AGG | 0.554846 | 5.1:+73714154 | MS.gene062317:CDS |
| GAGGAAGCTGACCATGTCAT+TGG | 0.555265 | 5.1:+73714017 | MS.gene062317:CDS |
| GCAGTACCTCCTCCCGCAGA+AGG | 0.555601 | 5.1:-73718494 | None:intergenic |
| CTTCTTGGAAATGGTGAAGT+TGG | 0.555859 | 5.1:+73717729 | MS.gene062317:CDS |
| TTGGGTATATGTGGATGCTA+TGG | 0.555897 | 5.1:+73718301 | MS.gene062317:CDS |
| TTGGGTATATGTGGATGCTA+TGG | 0.555897 | 5.1:+73722335 | MS.gene062317:CDS |
| TTCCTGCCCCTGATGATACA+AGG | 0.557681 | 5.1:+73714396 | MS.gene062317:CDS |
| GAGATTGGGAGGCTATGAGA+AGG | 0.562330 | 5.1:+73714802 | MS.gene062317:CDS |
| GAGATTGGGAGGCTATGAGA+AGG | 0.562330 | 5.1:+73719261 | MS.gene062317:CDS |
| TTCCTGTCCTTGTATCATCA+GGG | 0.567796 | 5.1:-73714403 | None:intergenic |
| AGGCCCTTCTTGATTACGAA+AGG | 0.570162 | 5.1:+73716744 | MS.gene062317:intron |
| TCAACATTCACAGGCTCTGG+AGG | 0.570563 | 5.1:-73716809 | None:intergenic |
| TCAACATTCACAGGCTCTGG+AGG | 0.570563 | 5.1:-73721059 | None:intergenic |
| GCTCCTTCATAAAAGCTGCT+TGG | 0.572842 | 5.1:-73714574 | None:intergenic |
| GCTCCTTCATAAAAGCTGCT+TGG | 0.572842 | 5.1:-73719033 | None:intergenic |
| GGCGGCTGATGCTCATATGT+TGG | 0.573754 | 5.1:+73714322 | MS.gene062317:CDS |
| GGAACAGCTGTGGTTGACAT+AGG | 0.574547 | 5.1:+73718266 | MS.gene062317:CDS |
| TACCCTTCATTCGGTTGAGG+CGG | 0.575922 | 5.1:+73714304 | MS.gene062317:CDS |
| GCCCCTGATGATACAAGGAC+AGG | 0.576326 | 5.1:+73714401 | MS.gene062317:CDS |
| ATAAAATGTCCGGAAAGTCC+AGG | 0.582795 | 5.1:-73716430 | None:intergenic |
| TGTTAAAATTGGGAAGGAAG+AGG | 0.583384 | 5.1:+73714211 | MS.gene062317:CDS |
| AGCCGCCTCAACCGAATGAA+GGG | 0.583777 | 5.1:-73714306 | None:intergenic |
| CATTCTCCATAAAATTTGGG+AGG | 0.584904 | 5.1:-73714635 | None:intergenic |
| CATTCTCCATAAAATTTGGG+AGG | 0.584904 | 5.1:-73719094 | None:intergenic |
| ATGCCTTTCATAATCAAGAA+GGG | 0.589284 | 5.1:-73720997 | None:intergenic |
| ATGCCTTTCGTAATCAAGAA+GGG | 0.591525 | 5.1:-73716747 | None:intergenic |
| CATATGTTGGACACAGCTAA+GGG | 0.591530 | 5.1:+73714335 | MS.gene062317:CDS |
| GCCTGTAGATAATGAAAACC+CGG | 0.601904 | 5.1:+73714478 | MS.gene062317:CDS |
| AGATGATGTTAAAATTGGGA+AGG | 0.607157 | 5.1:+73714205 | MS.gene062317:CDS |
| AGGTAACCTCATGTAAGTTG+TGG | 0.607979 | 5.1:+73715597 | MS.gene062317:intron |
| AGGTAACCTCATGTAAGTTG+TGG | 0.607979 | 5.1:+73719891 | MS.gene062317:intron |
| TGTAAGTTGTGGCGGAGTGT+GGG | 0.610524 | 5.1:+73715608 | MS.gene062317:CDS |
| TGTAAGTTGTGGCGGAGTGT+GGG | 0.610524 | 5.1:+73719902 | MS.gene062317:CDS |
| GAAAACGACAAAGTGGGTCA+GGG | 0.611750 | 5.1:+73713972 | MS.gene062317:CDS |
| AAATGAGTCGGGAACAGAAG+AGG | 0.612300 | 5.1:+73714550 | MS.gene062317:CDS |
| AAATGAGTCGGGAACAGAAG+AGG | 0.612300 | 5.1:+73719009 | MS.gene062317:CDS |
| TAACCTCATGTAAGTTGTGG+CGG | 0.622380 | 5.1:+73715600 | MS.gene062317:CDS |
| TAACCTCATGTAAGTTGTGG+CGG | 0.622380 | 5.1:+73719894 | MS.gene062317:CDS |
| TGCTAGGTCGGGAACAGCTG+TGG | 0.627055 | 5.1:+73718256 | MS.gene062317:intron |
| TCCTGTCCTTGTATCATCAG+GGG | 0.629902 | 5.1:-73714402 | None:intergenic |
| ACATATACCCAATCAGCAGA+AGG | 0.633534 | 5.1:-73718290 | None:intergenic |
| ACATATACCCAATCAGCAGA+AGG | 0.633534 | 5.1:-73722324 | None:intergenic |
| ACAAAAGAAAACGACAAAGT+GGG | 0.644226 | 5.1:+73713966 | MS.gene062317:CDS |
| GTGGATGCTATGGTTGACAT+AGG | 0.648553 | 5.1:+73718311 | MS.gene062317:CDS |
| GTGGATGCTATGGTTGACAT+AGG | 0.648553 | 5.1:+73722345 | MS.gene062317:CDS |
| TGAAGATGCTTCTGATGTGA+AGG | 0.653690 | 5.1:+73714358 | MS.gene062317:CDS |
| GGCTCTGGAGGAGATGCGAT+AGG | 0.659024 | 5.1:-73716797 | None:intergenic |
| GGCTCTGGAGGAGATGCGAT+AGG | 0.659024 | 5.1:-73721047 | None:intergenic |
| TCCGGCGAATGTTAATGTAG+AGG | 0.660878 | 5.1:+73713998 | MS.gene062317:CDS |
| GAAAGGCATAACATAAAAGG+CGG | 0.672469 | 5.1:+73721011 | MS.gene062317:CDS |
| AGATGCTTCTGATGTGAAGG+TGG | 0.677639 | 5.1:+73714361 | MS.gene062317:CDS |
| CCGGAAAGTCCAGGAAACTG+TGG | 0.685217 | 5.1:-73720671 | None:intergenic |
| CCGGAAAGTCCAGGAAACTG+TGG | 0.692339 | 5.1:-73716421 | None:intergenic |
| GGATGAAAATGTGAAACCCA+AGG | 0.695062 | 5.1:+73714244 | MS.gene062317:CDS |
| GAAAGGCATAACATAAAAGG+CGG | 0.700632 | 5.1:+73716761 | MS.gene062317:CDS |
| GAAGGAAGAGGTGCATGCTG+AGG | 0.700761 | 5.1:+73714223 | MS.gene062317:CDS |
| ACTCCGCCACAACTTACATG+AGG | 0.707054 | 5.1:-73715603 | None:intergenic |
| ACTCCGCCACAACTTACATG+AGG | 0.707054 | 5.1:-73719897 | None:intergenic |
| ATAATGCAGTCAAAGCAGCA+CGG | 0.717518 | 5.1:+73718045 | MS.gene062317:CDS |
| ATAATGCAGTCAAAGCAGCA+CGG | 0.717518 | 5.1:+73722077 | MS.gene062317:CDS |
| AGAGCTGTGATGAGATTGGG+AGG | 0.730490 | 5.1:+73714791 | MS.gene062317:CDS |
| AGAGCTGTGATGAGATTGGG+AGG | 0.730490 | 5.1:+73719250 | MS.gene062317:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 73713957 | 73722590 | 73713957 | ID=MS.gene062317 |
| chr5.1 | mRNA | 73713957 | 73722590 | 73713957 | ID=MS.gene062317.t1;Parent=MS.gene062317 |
| chr5.1 | exon | 73713957 | 73714672 | 73713957 | ID=MS.gene062317.t1.exon1;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73713957 | 73714672 | 73713957 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73714784 | 73714823 | 73714784 | ID=MS.gene062317.t1.exon2;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73714784 | 73714823 | 73714784 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73715599 | 73715651 | 73715599 | ID=MS.gene062317.t1.exon3;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73715599 | 73715651 | 73715599 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73716413 | 73716458 | 73716413 | ID=MS.gene062317.t1.exon4;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73716413 | 73716458 | 73716413 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73716746 | 73716838 | 73716746 | ID=MS.gene062317.t1.exon5;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73716746 | 73716838 | 73716746 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73717711 | 73717767 | 73717711 | ID=MS.gene062317.t1.exon6;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73717711 | 73717767 | 73717711 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73717859 | 73717910 | 73717859 | ID=MS.gene062317.t1.exon7;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73717859 | 73717910 | 73717859 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73718012 | 73718087 | 73718012 | ID=MS.gene062317.t1.exon8;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73718012 | 73718087 | 73718012 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73718262 | 73718373 | 73718262 | ID=MS.gene062317.t1.exon9;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73718262 | 73718373 | 73718262 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73718459 | 73718509 | 73718459 | ID=MS.gene062317.t1.exon10;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73718459 | 73718509 | 73718459 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73718971 | 73719131 | 73718971 | ID=MS.gene062317.t1.exon11;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73718971 | 73719131 | 73718971 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73719243 | 73719282 | 73719243 | ID=MS.gene062317.t1.exon12;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73719243 | 73719282 | 73719243 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73719893 | 73719945 | 73719893 | ID=MS.gene062317.t1.exon13;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73719893 | 73719945 | 73719893 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73720663 | 73720708 | 73720663 | ID=MS.gene062317.t1.exon14;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73720663 | 73720708 | 73720663 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73720996 | 73721088 | 73720996 | ID=MS.gene062317.t1.exon15;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73720996 | 73721088 | 73720996 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73721889 | 73721940 | 73721889 | ID=MS.gene062317.t1.exon16;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73721889 | 73721940 | 73721889 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73722044 | 73722100 | 73722044 | ID=MS.gene062317.t1.exon17;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73722044 | 73722100 | 73722044 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73722322 | 73722407 | 73722322 | ID=MS.gene062317.t1.exon18;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73722322 | 73722407 | 73722322 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| chr5.1 | exon | 73722495 | 73722590 | 73722495 | ID=MS.gene062317.t1.exon19;Parent=MS.gene062317.t1 |
| chr5.1 | CDS | 73722495 | 73722590 | 73722495 | ID=cds.MS.gene062317.t1;Parent=MS.gene062317.t1 |
| Gene Sequence |
| Protein sequence |
