Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062413.t1 | XP_024626123.1 | 85.7 | 406 | 57 | 1 | 1 | 406 | 1 | 405 | 9.10E-153 | 550.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062413.t1 | Q6X7J4 | 41.4 | 423 | 186 | 7 | 1 | 406 | 1 | 378 | 5.3e-32 | 140.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062413.t1 | U5LKY5 | 85.7 | 406 | 57 | 1 | 1 | 406 | 1 | 405 | 6.6e-153 | 550.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene062413.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062413.t1 | MTR_7g025010 | 92.593 | 405 | 29 | 1 | 1 | 405 | 1 | 404 | 0.0 | 761 |
| MS.gene062413.t1 | MTR_4g088070 | 56.174 | 413 | 132 | 8 | 1 | 405 | 1 | 372 | 5.27e-134 | 391 |
| MS.gene062413.t1 | MTR_4g088080 | 55.917 | 338 | 115 | 6 | 7 | 339 | 8 | 316 | 1.31e-107 | 320 |
| MS.gene062413.t1 | MTR_2g015000 | 41.781 | 438 | 191 | 12 | 1 | 406 | 1 | 406 | 2.55e-81 | 257 |
| MS.gene062413.t1 | MTR_3g462480 | 64.865 | 74 | 26 | 0 | 336 | 409 | 20 | 93 | 9.35e-25 | 97.8 |
| MS.gene062413.t1 | MTR_4g088065 | 54.955 | 111 | 33 | 3 | 56 | 161 | 134 | 232 | 2.05e-24 | 101 |
| MS.gene062413.t1 | MTR_6g027390 | 63.333 | 60 | 22 | 0 | 39 | 98 | 24 | 83 | 3.30e-22 | 96.7 |
| MS.gene062413.t1 | MTR_7g086940 | 66.667 | 60 | 20 | 0 | 37 | 96 | 18 | 77 | 3.82e-22 | 95.9 |
| MS.gene062413.t1 | MTR_4g084550 | 41.667 | 84 | 49 | 0 | 27 | 110 | 44 | 127 | 3.72e-18 | 82.4 |
| MS.gene062413.t1 | MTR_5g081990 | 41.250 | 80 | 47 | 0 | 29 | 108 | 15 | 94 | 9.34e-16 | 75.5 |
| MS.gene062413.t1 | MTR_8g107210 | 50.000 | 62 | 31 | 0 | 47 | 108 | 96 | 157 | 1.15e-15 | 78.2 |
| MS.gene062413.t1 | MTR_5g021930 | 48.438 | 64 | 32 | 1 | 47 | 109 | 30 | 93 | 9.79e-15 | 74.7 |
| MS.gene062413.t1 | MTR_1g115315 | 42.857 | 77 | 40 | 1 | 30 | 106 | 72 | 144 | 4.01e-14 | 72.4 |
| MS.gene062413.t1 | MTR_1g115315 | 42.857 | 77 | 40 | 1 | 30 | 106 | 72 | 144 | 4.56e-14 | 72.4 |
| MS.gene062413.t1 | MTR_1g019130 | 46.774 | 62 | 33 | 0 | 47 | 108 | 90 | 151 | 2.13e-13 | 69.7 |
| MS.gene062413.t1 | MTR_4g063735 | 45.161 | 62 | 34 | 0 | 47 | 108 | 25 | 86 | 3.07e-13 | 69.7 |
| MS.gene062413.t1 | MTR_1g019130 | 46.774 | 62 | 33 | 0 | 47 | 108 | 90 | 151 | 6.61e-13 | 68.6 |
| MS.gene062413.t1 | MTR_3g115620 | 44.444 | 63 | 35 | 0 | 45 | 107 | 80 | 142 | 8.06e-13 | 67.8 |
| MS.gene062413.t1 | MTR_7g060630 | 39.726 | 73 | 44 | 0 | 41 | 113 | 2 | 74 | 3.50e-12 | 65.9 |
| MS.gene062413.t1 | MTR_0777s0020 | 50.575 | 87 | 38 | 1 | 80 | 161 | 50 | 136 | 5.92e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062413.t1 | AT5G45980 | 52.344 | 128 | 53 | 1 | 1 | 120 | 1 | 128 | 5.37e-40 | 145 |
| MS.gene062413.t1 | AT5G45980 | 39.560 | 91 | 46 | 2 | 325 | 406 | 235 | 325 | 7.42e-11 | 63.5 |
| MS.gene062413.t1 | AT3G03660 | 68.519 | 54 | 17 | 0 | 45 | 98 | 31 | 84 | 1.34e-21 | 94.0 |
| MS.gene062413.t1 | AT3G03660 | 68.519 | 54 | 17 | 0 | 45 | 98 | 31 | 84 | 2.21e-21 | 94.0 |
| MS.gene062413.t1 | AT3G03660 | 66.102 | 59 | 19 | 1 | 41 | 98 | 26 | 84 | 2.76e-21 | 94.0 |
| MS.gene062413.t1 | AT3G03660 | 66.102 | 59 | 19 | 1 | 41 | 98 | 26 | 84 | 4.48e-21 | 94.0 |
| MS.gene062413.t1 | AT5G17810 | 66.667 | 54 | 18 | 0 | 45 | 98 | 19 | 72 | 9.68e-21 | 91.7 |
| MS.gene062413.t1 | AT5G17810 | 66.667 | 54 | 18 | 0 | 45 | 98 | 19 | 72 | 1.05e-20 | 91.7 |
| MS.gene062413.t1 | AT5G17810 | 66.667 | 54 | 18 | 0 | 45 | 98 | 19 | 72 | 1.05e-20 | 91.7 |
| MS.gene062413.t1 | AT5G05770 | 40.000 | 75 | 45 | 0 | 47 | 121 | 29 | 103 | 4.81e-15 | 71.6 |
| MS.gene062413.t1 | AT3G18010 | 38.384 | 99 | 52 | 2 | 47 | 145 | 76 | 165 | 6.64e-15 | 75.9 |
| MS.gene062413.t1 | AT3G11260 | 45.312 | 64 | 35 | 0 | 47 | 110 | 24 | 87 | 3.01e-14 | 71.2 |
| MS.gene062413.t1 | AT4G35550 | 46.032 | 63 | 34 | 0 | 45 | 107 | 97 | 159 | 4.58e-14 | 72.4 |
| MS.gene062413.t1 | AT2G17950 | 48.438 | 64 | 32 | 1 | 47 | 109 | 38 | 101 | 4.90e-14 | 72.8 |
| MS.gene062413.t1 | AT1G46480 | 46.774 | 62 | 33 | 0 | 47 | 108 | 90 | 151 | 1.33e-13 | 69.7 |
| MS.gene062413.t1 | AT2G33880 | 45.714 | 70 | 37 | 1 | 348 | 417 | 320 | 388 | 1.64e-13 | 72.0 |
| MS.gene062413.t1 | AT1G20700 | 44.444 | 63 | 35 | 0 | 45 | 107 | 31 | 93 | 1.84e-13 | 68.2 |
| MS.gene062413.t1 | AT1G20700 | 44.444 | 63 | 35 | 0 | 45 | 107 | 93 | 155 | 3.42e-13 | 68.9 |
| MS.gene062413.t1 | AT1G20700 | 44.444 | 63 | 35 | 0 | 45 | 107 | 93 | 155 | 3.75e-13 | 68.6 |
| MS.gene062413.t1 | AT1G46480 | 46.774 | 62 | 33 | 0 | 47 | 108 | 90 | 151 | 6.54e-13 | 68.9 |
| MS.gene062413.t1 | AT2G33880 | 47.458 | 59 | 31 | 0 | 348 | 406 | 320 | 378 | 1.84e-12 | 68.9 |
| MS.gene062413.t1 | AT5G59340 | 41.935 | 62 | 36 | 0 | 47 | 108 | 14 | 75 | 2.35e-12 | 67.4 |
| MS.gene062413.t1 | AT2G28610 | 41.176 | 68 | 40 | 0 | 41 | 108 | 2 | 69 | 4.46e-12 | 66.2 |
| MS.gene062413.t1 | AT2G01500 | 39.241 | 79 | 40 | 1 | 31 | 101 | 37 | 115 | 9.53e-12 | 65.5 |
| MS.gene062413.t1 | AT5G46010 | 46.154 | 65 | 34 | 1 | 43 | 106 | 50 | 114 | 2.21e-11 | 61.2 |
Find 107 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATCTTGGCTTTGGTTC+TGG | 0.191744 | 7.3:+75103387 | None:intergenic |
| CAAGAACCACAACTTAATTT+TGG | 0.218741 | 7.3:-75102634 | MS.gene062413:CDS |
| ATGAACTATGGAAGTGTTAA+TGG | 0.219154 | 7.3:-75102826 | MS.gene062413:CDS |
| CACCATCCCTGTGTTGAAAA+TGG | 0.220373 | 7.3:+75103332 | None:intergenic |
| CATAGGTTTAATCACTTATC+TGG | 0.257497 | 7.3:-75102853 | MS.gene062413:CDS |
| AAAGGATGCACGAACGTTAA+AGG | 0.277456 | 7.3:+75102027 | None:intergenic |
| AATAAGCATCAACTTGGTTT+TGG | 0.278040 | 7.3:+75102986 | None:intergenic |
| ATGCGAATTTGTTGTGGTTT+TGG | 0.291711 | 7.3:+75103363 | None:intergenic |
| TTATCTGGTTTCATGAACTA+TGG | 0.293987 | 7.3:-75102838 | MS.gene062413:CDS |
| TTGACGTTGATGATCAATAA+TGG | 0.324294 | 7.3:+75102519 | None:intergenic |
| AATTAAGTTGTGGTTCTTGC+TGG | 0.337280 | 7.3:+75102638 | None:intergenic |
| TTTGGGTTCCATCTTGGCTT+TGG | 0.347448 | 7.3:+75103381 | None:intergenic |
| TAAACAAAGCAAATGTTATA+AGG | 0.351791 | 7.3:+75101890 | None:intergenic |
| TCATCATCGTCATCTTCTTC+TGG | 0.355757 | 7.3:-75103117 | MS.gene062413:CDS |
| CTCAACTCGTCTCTCTTAAC+TGG | 0.358193 | 7.3:-75104255 | MS.gene062413:intron |
| TTTAACGTTCGTGCATCCTT+TGG | 0.359074 | 7.3:-75102025 | MS.gene062413:CDS |
| CGTGAACAATTACAAGAGTT+TGG | 0.359135 | 7.3:-75103279 | MS.gene062413:CDS |
| ATTGTAATTTCTAACAATAT+CGG | 0.371493 | 7.3:-75103069 | MS.gene062413:CDS |
| CATGAGCTCATCATGAACTA+TGG | 0.376168 | 7.3:-75102745 | MS.gene062413:CDS |
| TGACGTTGATGATCAATAAT+GGG | 0.378539 | 7.3:+75102520 | None:intergenic |
| ATCTTCGTAATTTCCTCCCT+TGG | 0.380246 | 7.3:+75103303 | None:intergenic |
| TACTAAGGACGCCTCATTCA+TGG | 0.386072 | 7.3:-75102062 | MS.gene062413:CDS |
| TCCAGTTCTAACCGATGAAT+GGG | 0.405372 | 7.3:-75101969 | MS.gene062413:CDS |
| TGTGGTGTTGTCATGGCATT+AGG | 0.415749 | 7.3:+75102874 | None:intergenic |
| GGGTGTGGATGGTTGTAAAT+CGG | 0.422102 | 7.3:+75102945 | None:intergenic |
| GTTGTAAATCGGTTTCAGTC+GGG | 0.426487 | 7.3:+75102956 | None:intergenic |
| GGATTCTCCAATGCTAATGA+TGG | 0.428470 | 7.3:-75103048 | MS.gene062413:CDS |
| TCAGGATTTGGCGTGGAAGA+TGG | 0.430982 | 7.3:-75102106 | MS.gene062413:intron |
| ATGGGGAATGGAACAGCAAC+AGG | 0.432330 | 7.3:+75102538 | None:intergenic |
| CCCCATTCATCGGTTAGAAC+TGG | 0.434360 | 7.3:+75101968 | None:intergenic |
| GCCTTGAGAATTCCGTTGGT+TGG | 0.439358 | 7.3:+75104278 | None:intergenic |
| TTCGTAATTTCCTCCCTTGG+TGG | 0.441626 | 7.3:+75103306 | None:intergenic |
| CCATGGTGCTACTTATTACC+TGG | 0.446959 | 7.3:-75101924 | MS.gene062413:CDS |
| AAGGATGCACGAACGTTAAA+GGG | 0.448612 | 7.3:+75102028 | None:intergenic |
| TTAGAAATTACAATTTCATC+GGG | 0.455420 | 7.3:+75103078 | None:intergenic |
| CTCCAGTTCTAACCGATGAA+TGG | 0.457716 | 7.3:-75101970 | MS.gene062413:CDS |
| CGCCTCATTCATGGTTGATG+TGG | 0.462527 | 7.3:-75102053 | MS.gene062413:CDS |
| GCAGTTCTCTTTGACTCCTC+TGG | 0.463999 | 7.3:-75101995 | MS.gene062413:CDS |
| GCCTCATTCATGGTTGATGT+GGG | 0.464076 | 7.3:-75102052 | MS.gene062413:CDS |
| CCTCTTCCTCCGACTACCAT+TGG | 0.468440 | 7.3:-75102565 | MS.gene062413:CDS |
| CACCATGGTGGAGCGAATCA+AGG | 0.472512 | 7.3:+75101939 | None:intergenic |
| TCGTAATTTCCTCCCTTGGT+GGG | 0.478421 | 7.3:+75103307 | None:intergenic |
| GTTAGAAATTACAATTTCAT+CGG | 0.486033 | 7.3:+75103077 | None:intergenic |
| CTCCAGAACCAAAGCCAAGA+TGG | 0.487752 | 7.3:-75103389 | MS.gene062413:CDS |
| GTGTTTCTCGTTTCTTGTTG+TGG | 0.496273 | 7.3:+75103181 | None:intergenic |
| AATTACAATTTCATCGGGAG+AGG | 0.500444 | 7.3:+75103083 | None:intergenic |
| TCATTAATATGATTATCCAC+AGG | 0.501645 | 7.3:+75102907 | None:intergenic |
| CCAATGGTAGTCGGAGGAAG+AGG | 0.504535 | 7.3:+75102565 | None:intergenic |
| ATTCCGTTGGTTGGACGCAT+TGG | 0.507387 | 7.3:+75104287 | None:intergenic |
| GGTTGTAAATCGGTTTCAGT+CGG | 0.507694 | 7.3:+75102955 | None:intergenic |
| GACTCTTCTCTTGATCATAT+CGG | 0.515755 | 7.3:+75102692 | None:intergenic |
| AAATATTGTTTAGGTGGAGA+TGG | 0.518896 | 7.3:-75103423 | MS.gene062413:intron |
| CACCATCCCATCATTAGCAT+TGG | 0.520729 | 7.3:+75103041 | None:intergenic |
| ATCATATCGGTCATCGATTG+TGG | 0.526068 | 7.3:+75102705 | None:intergenic |
| TTGAAACCAGTAAAAGACAT+TGG | 0.529718 | 7.3:+75103242 | None:intergenic |
| TGAGGCCTTGAGAATTCCGT+TGG | 0.536803 | 7.3:+75104274 | None:intergenic |
| AGGTAAGGGTTGAACCATTG+AGG | 0.538283 | 7.3:+75102798 | None:intergenic |
| TGATGATCAATAATGGGGAA+TGG | 0.544295 | 7.3:+75102526 | None:intergenic |
| AGAAGATGACGATGATGAGT+TGG | 0.545042 | 7.3:+75103122 | None:intergenic |
| GAAGATGACGATGATGAGTT+GGG | 0.545800 | 7.3:+75103123 | None:intergenic |
| CATTAATATGATTATCCACA+GGG | 0.549869 | 7.3:+75102908 | None:intergenic |
| GCTAGGCCAATGTTTGTTCG+AGG | 0.550853 | 7.3:+75104326 | None:intergenic |
| TGTTAATGGAAGCTCCTCAA+TGG | 0.556181 | 7.3:-75102812 | MS.gene062413:CDS |
| TTACAAGAGTTTGGTCAAGT+TGG | 0.556243 | 7.3:-75103270 | MS.gene062413:CDS |
| TTGTAAATCGGTTTCAGTCG+GGG | 0.563298 | 7.3:+75102957 | None:intergenic |
| ACCATGGTGGAGCGAATCAA+GGG | 0.565239 | 7.3:+75101940 | None:intergenic |
| CCCCACATCAACCATGAATG+AGG | 0.565657 | 7.3:+75102051 | None:intergenic |
| TCAAGAATGCGAATTTGTTG+TGG | 0.566753 | 7.3:+75103357 | None:intergenic |
| GTAGACTTCTTGAACATGCT+AGG | 0.571860 | 7.3:+75104309 | None:intergenic |
| TGGCTTCCTCGAACAAACAT+TGG | 0.573120 | 7.3:-75104332 | MS.gene062413:CDS |
| CGAGAAACACAACAAAACTC+TGG | 0.574956 | 7.3:-75103168 | MS.gene062413:CDS |
| AAGGGTAACACCCCATTCAT+CGG | 0.584993 | 7.3:+75101958 | None:intergenic |
| TTTGTTTGCTTCGAGACTTG+CGG | 0.586191 | 7.3:+75103217 | None:intergenic |
| AAACCTATGTGGTGTTGTCA+TGG | 0.586615 | 7.3:+75102867 | None:intergenic |
| GATTCTCCAATGCTAATGAT+GGG | 0.589822 | 7.3:-75103047 | MS.gene062413:CDS |
| AAAATGTACTGTGATTACTA+AGG | 0.592453 | 7.3:-75102077 | MS.gene062413:CDS |
| CTCCAATGCTAATGATGGGA+TGG | 0.594670 | 7.3:-75103043 | MS.gene062413:CDS |
| AACAGCAACAGGTGCACCAA+TGG | 0.597910 | 7.3:+75102549 | None:intergenic |
| TTGGTTCACCGAGACTGCGG+GGG | 0.602191 | 7.3:+75103005 | None:intergenic |
| TCCAACCAACGGAATTCTCA+AGG | 0.602756 | 7.3:-75104279 | MS.gene062413:CDS |
| GAGAACTGCTCGATCTCCAA+AGG | 0.604797 | 7.3:+75102009 | None:intergenic |
| ATTATTGATCATCAACGTCA+AGG | 0.607731 | 7.3:-75102517 | MS.gene062413:intron |
| CTACCAATGCGTCCAACCAA+CGG | 0.608541 | 7.3:-75104290 | MS.gene062413:CDS |
| GATAAGTGATTAAACCTATG+TGG | 0.608582 | 7.3:+75102856 | None:intergenic |
| ACCCTTGATTCGCTCCACCA+TGG | 0.609559 | 7.3:-75101941 | MS.gene062413:CDS |
| TGTGAAAATAAGCATCAACT+TGG | 0.611249 | 7.3:+75102980 | None:intergenic |
| TGATCAAGAGAAGAGTCAAG+AGG | 0.611568 | 7.3:-75102686 | MS.gene062413:CDS |
| GCAACACCAAAATTAAGTTG+TGG | 0.616333 | 7.3:+75102628 | None:intergenic |
| TTTGGTTCACCGAGACTGCG+GGG | 0.623412 | 7.3:+75103004 | None:intergenic |
| CAGTTAAGAGAGACGAGTTG+AGG | 0.631435 | 7.3:+75104256 | None:intergenic |
| GATGGTGAACCCACCAAGGG+AGG | 0.632998 | 7.3:-75103316 | MS.gene062413:CDS |
| ATGCCATGACAACACCACAT+AGG | 0.641572 | 7.3:-75102870 | MS.gene062413:CDS |
| ACAGGTGCACCAATGGTAGT+CGG | 0.643930 | 7.3:+75102556 | None:intergenic |
| GACGTTGATGATCAATAATG+GGG | 0.644683 | 7.3:+75102521 | None:intergenic |
| ATTTGGCGTGGAAGATGGAG+CGG | 0.645210 | 7.3:-75102101 | MS.gene062413:CDS |
| CAGGGATGGTGAACCCACCA+AGG | 0.647061 | 7.3:-75103320 | MS.gene062413:CDS |
| GGTAATAAGTAGCACCATGG+TGG | 0.650858 | 7.3:+75101927 | None:intergenic |
| CAATGCTAATGATGGGATGG+TGG | 0.652306 | 7.3:-75103040 | MS.gene062413:CDS |
| CCTCATTCATGGTTGATGTG+GGG | 0.657797 | 7.3:-75102051 | MS.gene062413:CDS |
| ATGAGCTCATGATTAACTAG+AGG | 0.665512 | 7.3:+75102757 | None:intergenic |
| AGGGATGGTGAACCCACCAA+GGG | 0.665906 | 7.3:-75103319 | MS.gene062413:CDS |
| CCAGTTCTAACCGATGAATG+GGG | 0.682383 | 7.3:-75101968 | MS.gene062413:CDS |
| GGTTAGAACTGGAGTACCAG+AGG | 0.692890 | 7.3:+75101979 | None:intergenic |
| CCAGGTAATAAGTAGCACCA+TGG | 0.700447 | 7.3:+75101924 | None:intergenic |
| GGTGCACCAATGGTAGTCGG+AGG | 0.701339 | 7.3:+75102559 | None:intergenic |
| GTGTTTGTCAGGATTTGGCG+TGG | 0.703060 | 7.3:-75102113 | MS.gene062413:intron |
| GATGACGATGATGAGTTGGG+TGG | 0.712576 | 7.3:+75103126 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAATAATAAGTAGA+GGG | + | chr7.3:75102003-75102022 | None:intergenic | 10.0% |
| !! | TAAATAATAATAATAAGTAG+AGG | + | chr7.3:75102004-75102023 | None:intergenic | 10.0% |
| !!! | TAATATTTCTATAAAACAAT+TGG | + | chr7.3:75102519-75102538 | None:intergenic | 10.0% |
| !! | ATTGTAATTTCTAACAATAT+CGG | - | chr7.3:75103150-75103169 | MS.gene062413:CDS | 15.0% |
| !!! | ATTTGAAAGTTTAGATTTTT+AGG | - | chr7.3:75102234-75102253 | MS.gene062413:intron | 15.0% |
| !!! | TTTGAAAGTTTAGATTTTTA+GGG | - | chr7.3:75102235-75102254 | MS.gene062413:intron | 15.0% |
| !! | GAAATATTATAATACTCCAT+AGG | - | chr7.3:75102530-75102549 | MS.gene062413:CDS | 20.0% |
| !! | GTTAGAAATTACAATTTCAT+CGG | + | chr7.3:75103145-75103164 | None:intergenic | 20.0% |
| !! | TAAACAAAGCAAATGTTATA+AGG | + | chr7.3:75104332-75104351 | None:intergenic | 20.0% |
| !! | TTAGAAATTACAATTTCATC+GGG | + | chr7.3:75103144-75103163 | None:intergenic | 20.0% |
| !! | TTTAACAAATATTGTTTAGG+TGG | - | chr7.3:75102790-75102809 | MS.gene062413:CDS | 20.0% |
| !!! | AACTTAGTTTGAATTTTAGT+TGG | - | chr7.3:75103806-75103825 | MS.gene062413:intron | 20.0% |
| !!! | AATTTTAAATCGATTCGTTT+AGG | + | chr7.3:75102217-75102236 | None:intergenic | 20.0% |
| !!! | GCTTTTAACAAATATTGTTT+AGG | - | chr7.3:75102787-75102806 | MS.gene062413:CDS | 20.0% |
| !!! | TATAGAAGTATCATAATACT+CGG | - | chr7.3:75102697-75102716 | MS.gene062413:CDS | 20.0% |
| !!! | TGAGTTTATAATCATTGATT+TGG | + | chr7.3:75102085-75102104 | None:intergenic | 20.0% |
| !!! | TTGTTTTATTGTATACACTA+CGG | - | chr7.3:75102457-75102476 | MS.gene062413:intron | 20.0% |
| ! | AAAATGTACTGTGATTACTA+AGG | - | chr7.3:75104142-75104161 | MS.gene062413:intron | 25.0% |
| ! | ATGAACTATGGAAGTAAAAA+TGG | - | chr7.3:75103486-75103505 | MS.gene062413:intron | 25.0% |
| ! | CATTAATATGATTATCCACA+GGG | + | chr7.3:75103314-75103333 | None:intergenic | 25.0% |
| ! | GCTAAAATTTGATCTATACT+CGG | - | chr7.3:75102257-75102276 | MS.gene062413:intron | 25.0% |
| ! | TAATAAAACGAAATCATACC+TGG | + | chr7.3:75104000-75104019 | None:intergenic | 25.0% |
| ! | TCATTAATATGATTATCCAC+AGG | + | chr7.3:75103315-75103334 | None:intergenic | 25.0% |
| ! | TGAAAATATAATTGCTCGAA+CGG | + | chr7.3:75102322-75102341 | None:intergenic | 25.0% |
| ! | TTTGATTAGATCTAACACAT+AGG | + | chr7.3:75102039-75102058 | None:intergenic | 25.0% |
| !! | AATTTTCTTTTGTGTTTGTC+AGG | - | chr7.3:75104095-75104114 | MS.gene062413:intron | 25.0% |
| !! | ATACCTGGAACTTTAAATTT+TGG | + | chr7.3:75103985-75104004 | None:intergenic | 25.0% |
| !! | TACCTGGAACTTTAAATTTT+GGG | + | chr7.3:75103984-75104003 | None:intergenic | 25.0% |
| !!! | GTTTAGGTTTTTTCTATGTT+GGG | + | chr7.3:75102201-75102220 | None:intergenic | 25.0% |
| !!! | TTTAGGTTTTTTCTATGTTG+GGG | + | chr7.3:75102200-75102219 | None:intergenic | 25.0% |
| !!! | TTTCGTTTTATTATATCCCA+CGG | - | chr7.3:75104007-75104026 | MS.gene062413:intron | 25.0% |
| !!! | TTTTTGTTGTTTTATCCATC+TGG | + | chr7.3:75103907-75103926 | None:intergenic | 25.0% |
| AAATATTGTTTAGGTGGAGA+TGG | - | chr7.3:75102796-75102815 | MS.gene062413:CDS | 30.0% | |
| ATTATTGATCATCAACGTCA+AGG | - | chr7.3:75103702-75103721 | MS.gene062413:intron | 30.0% | |
| CAAAACGACTTAAATTGATG+TGG | - | chr7.3:75102115-75102134 | MS.gene062413:intron | 30.0% | |
| CATAGGTTTAATCACTTATC+TGG | - | chr7.3:75103366-75103385 | MS.gene062413:CDS | 30.0% | |
| GATAAGTGATTAAACCTATG+TGG | + | chr7.3:75103366-75103385 | None:intergenic | 30.0% | |
| GTAAACTACAATATGACCTA+TGG | + | chr7.3:75102549-75102568 | None:intergenic | 30.0% | |
| GTAAACTTAGCATGTTTGAT+TGG | - | chr7.3:75102765-75102784 | MS.gene062413:CDS | 30.0% | |
| TGTGAAAATAAGCATCAACT+TGG | + | chr7.3:75103242-75103261 | None:intergenic | 30.0% | |
| TTATCTTCATCTGTTTGCTT+TGG | + | chr7.3:75102491-75102510 | None:intergenic | 30.0% | |
| TTGAAACCAGTAAAAGACAT+TGG | + | chr7.3:75102980-75102999 | None:intergenic | 30.0% | |
| ! | AATAAGCATCAACTTGGTTT+TGG | + | chr7.3:75103236-75103255 | None:intergenic | 30.0% |
| ! | ATCAACATTTTGTTGAGGTA+AGG | + | chr7.3:75103439-75103458 | None:intergenic | 30.0% |
| ! | CAAGAACCACAACTTAATTT+TGG | - | chr7.3:75103585-75103604 | MS.gene062413:intron | 30.0% |
| ! | TCAACATTTTGTTGAGGTAA+GGG | + | chr7.3:75103438-75103457 | None:intergenic | 30.0% |
| ! | TTATCTGGTTTCATGAACTA+TGG | - | chr7.3:75103381-75103400 | MS.gene062413:CDS | 30.0% |
| !! | ATGAACTATGGAAGTGTTAA+TGG | - | chr7.3:75103393-75103412 | MS.gene062413:CDS | 30.0% |
| !! | TGACGTTGATGATCAATAAT+GGG | + | chr7.3:75103702-75103721 | None:intergenic | 30.0% |
| !! | TTGACGTTGATGATCAATAA+TGG | + | chr7.3:75103703-75103722 | None:intergenic | 30.0% |
| !!! | CGTTTAGGTTTTTTCTATGT+TGG | + | chr7.3:75102202-75102221 | None:intergenic | 30.0% |
| AATTACAATTTCATCGGGAG+AGG | + | chr7.3:75103139-75103158 | None:intergenic | 35.0% | |
| ATGAGCTCATGATTAACTAG+AGG | + | chr7.3:75103465-75103484 | None:intergenic | 35.0% | |
| CGTGAACAATTACAAGAGTT+TGG | - | chr7.3:75102940-75102959 | MS.gene062413:CDS | 35.0% | |
| GACTCTTCTCTTGATCATAT+CGG | + | chr7.3:75103530-75103549 | None:intergenic | 35.0% | |
| GATTCTCCAATGCTAATGAT+GGG | - | chr7.3:75103172-75103191 | MS.gene062413:CDS | 35.0% | |
| TATAAGGAAAAATACGCACC+AGG | + | chr7.3:75104316-75104335 | None:intergenic | 35.0% | |
| TTACAAGAGTTTGGTCAAGT+TGG | - | chr7.3:75102949-75102968 | MS.gene062413:CDS | 35.0% | |
| TTGTTTATATGACCCTGACA+TGG | + | chr7.3:75102147-75102166 | None:intergenic | 35.0% | |
| ! | AATTAAGTTGTGGTTCTTGC+TGG | + | chr7.3:75103584-75103603 | None:intergenic | 35.0% |
| ! | CACCCAAAATTTAAAGTTCC+AGG | - | chr7.3:75103979-75103998 | MS.gene062413:intron | 35.0% |
| ! | CTTTTGTGTTTGTCAGGATT+TGG | - | chr7.3:75104101-75104120 | MS.gene062413:intron | 35.0% |
| ! | GCAACACCAAAATTAAGTTG+TGG | + | chr7.3:75103594-75103613 | None:intergenic | 35.0% |
| ! | GGTACATCAACATTTTGTTG+AGG | + | chr7.3:75103444-75103463 | None:intergenic | 35.0% |
| ! | TGATGATCAATAATGGGGAA+TGG | + | chr7.3:75103696-75103715 | None:intergenic | 35.0% |
| !! | GACGTTGATGATCAATAATG+GGG | + | chr7.3:75103701-75103720 | None:intergenic | 35.0% |
| !! | TCAAGAATGCGAATTTGTTG+TGG | + | chr7.3:75102865-75102884 | None:intergenic | 35.0% |
| !! | TTGAAGCCATTTTCAACACA+GGG | - | chr7.3:75102881-75102900 | MS.gene062413:CDS | 35.0% |
| !!! | ATGCGAATTTGTTGTGGTTT+TGG | + | chr7.3:75102859-75102878 | None:intergenic | 35.0% |
| !!! | ATGTGGTTTTTTCCATGTCA+GGG | - | chr7.3:75102132-75102151 | MS.gene062413:intron | 35.0% |
| !!! | TGCGAATTTGTTGTGGTTTT+GGG | + | chr7.3:75102858-75102877 | None:intergenic | 35.0% |
| AAAGGATGCACGAACGTTAA+AGG | + | chr7.3:75104195-75104214 | None:intergenic | 40.0% | |
| AAGGATGCACGAACGTTAAA+GGG | + | chr7.3:75104194-75104213 | None:intergenic | 40.0% | |
| ACAGGGAAAGAGAAAAATGG+GGG | + | chr7.3:75103297-75103316 | None:intergenic | 40.0% | |
| AGAAGATGACGATGATGAGT+TGG | + | chr7.3:75103100-75103119 | None:intergenic | 40.0% | |
| ATCTTCGTAATTTCCTCCCT+TGG | + | chr7.3:75102919-75102938 | None:intergenic | 40.0% | |
| CACAGGGAAAGAGAAAAATG+GGG | + | chr7.3:75103298-75103317 | None:intergenic | 40.0% | |
| CATGAGCTCATCATGAACTA+TGG | - | chr7.3:75103474-75103493 | MS.gene062413:intron | 40.0% | |
| CCACAGGGAAAGAGAAAAAT+GGG | + | chr7.3:75103299-75103318 | None:intergenic | 40.0% | |
| CGAGAAACACAACAAAACTC+TGG | - | chr7.3:75103051-75103070 | MS.gene062413:CDS | 40.0% | |
| GAAGATGACGATGATGAGTT+GGG | + | chr7.3:75103099-75103118 | None:intergenic | 40.0% | |
| GGATTCTCCAATGCTAATGA+TGG | - | chr7.3:75103171-75103190 | MS.gene062413:CDS | 40.0% | |
| GTAGACTTCTTGAACATGCT+AGG | + | chr7.3:75101913-75101932 | None:intergenic | 40.0% | |
| GTGTTTCTCGTTTCTTGTTG+TGG | + | chr7.3:75103041-75103060 | None:intergenic | 40.0% | |
| TCATCATCGTCATCTTCTTC+TGG | - | chr7.3:75103102-75103121 | MS.gene062413:CDS | 40.0% | |
| TCCACAGGGAAAGAGAAAAA+TGG | + | chr7.3:75103300-75103319 | None:intergenic | 40.0% | |
| TGATCAAGAGAAGAGTCAAG+AGG | - | chr7.3:75103533-75103552 | MS.gene062413:intron | 40.0% | |
| TGTTAATGGAAGCTCCTCAA+TGG | - | chr7.3:75103407-75103426 | MS.gene062413:CDS | 40.0% | |
| TTCATCTCTCACATGCAACT+TGG | + | chr7.3:75104077-75104096 | None:intergenic | 40.0% | |
| TTTAACGTTCGTGCATCCTT+TGG | - | chr7.3:75104194-75104213 | MS.gene062413:intron | 40.0% | |
| TTTGTTTGCTTCGAGACTTG+CGG | + | chr7.3:75103005-75103024 | None:intergenic | 40.0% | |
| ! | ATCATATCGGTCATCGATTG+TGG | + | chr7.3:75103517-75103536 | None:intergenic | 40.0% |
| ! | GGTTGTAAATCGGTTTCAGT+CGG | + | chr7.3:75103267-75103286 | None:intergenic | 40.0% |
| ! | GTGATGCCAATGTCTTTTAC+TGG | - | chr7.3:75102971-75102990 | MS.gene062413:CDS | 40.0% |
| ! | GTTGTAAATCGGTTTCAGTC+GGG | + | chr7.3:75103266-75103285 | None:intergenic | 40.0% |
| ! | TCCAGTTCTAACCGATGAAT+GGG | - | chr7.3:75104250-75104269 | MS.gene062413:intron | 40.0% |
| ! | TTGTAAATCGGTTTCAGTCG+GGG | + | chr7.3:75103265-75103284 | None:intergenic | 40.0% |
| !! | AAACCTATGTGGTGTTGTCA+TGG | + | chr7.3:75103355-75103374 | None:intergenic | 40.0% |
| !! | CTTGAAGCCATTTTCAACAC+AGG | - | chr7.3:75102880-75102899 | MS.gene062413:CDS | 40.0% |
| !! | TCCATCTGGTTCTCAAAAAG+CGG | + | chr7.3:75103893-75103912 | None:intergenic | 40.0% |
| !!! | GATGTGGTTTTTTCCATGTC+AGG | - | chr7.3:75102131-75102150 | MS.gene062413:intron | 40.0% |
| AAGGGTAACACCCCATTCAT+CGG | + | chr7.3:75104264-75104283 | None:intergenic | 45.0% | |
| AGGTAAGGGTTGAACCATTG+AGG | + | chr7.3:75103424-75103443 | None:intergenic | 45.0% | |
| ATGCCATGACAACACCACAT+AGG | - | chr7.3:75103349-75103368 | MS.gene062413:CDS | 45.0% | |
| CACCATCCCATCATTAGCAT+TGG | + | chr7.3:75103181-75103200 | None:intergenic | 45.0% | |
| CACCATCCCTGTGTTGAAAA+TGG | + | chr7.3:75102890-75102909 | None:intergenic | 45.0% | |
| CAGTTAAGAGAGACGAGTTG+AGG | + | chr7.3:75101966-75101985 | None:intergenic | 45.0% | |
| CCAGGTAATAAGTAGCACCA+TGG | + | chr7.3:75104298-75104317 | None:intergenic | 45.0% | |
| CTCAACTCGTCTCTCTTAAC+TGG | - | chr7.3:75101964-75101983 | MS.gene062413:CDS | 45.0% | |
| GAAAGAGAAAAATGGGGGTG+TGG | + | chr7.3:75103292-75103311 | None:intergenic | 45.0% | |
| GGGTGTGGATGGTTGTAAAT+CGG | + | chr7.3:75103277-75103296 | None:intergenic | 45.0% | |
| GGTAATAAGTAGCACCATGG+TGG | + | chr7.3:75104295-75104314 | None:intergenic | 45.0% | |
| TACTAAGGACGCCTCATTCA+TGG | - | chr7.3:75104157-75104176 | MS.gene062413:intron | 45.0% | |
| TCCAACCAACGGAATTCTCA+AGG | - | chr7.3:75101940-75101959 | MS.gene062413:CDS | 45.0% | |
| TCGTAATTTCCTCCCTTGGT+GGG | + | chr7.3:75102915-75102934 | None:intergenic | 45.0% | |
| TGGCTTCCTCGAACAAACAT+TGG | - | chr7.3:75101887-75101906 | MS.gene062413:CDS | 45.0% | |
| TTCGTAATTTCCTCCCTTGG+TGG | + | chr7.3:75102916-75102935 | None:intergenic | 45.0% | |
| ! | CAATGCTAATGATGGGATGG+TGG | - | chr7.3:75103179-75103198 | MS.gene062413:CDS | 45.0% |
| ! | CCAGTTCTAACCGATGAATG+GGG | - | chr7.3:75104251-75104270 | MS.gene062413:intron | 45.0% |
| ! | CCTCATTCATGGTTGATGTG+GGG | - | chr7.3:75104168-75104187 | MS.gene062413:intron | 45.0% |
| ! | CTCCAATGCTAATGATGGGA+TGG | - | chr7.3:75103176-75103195 | MS.gene062413:CDS | 45.0% |
| ! | CTCCAGTTCTAACCGATGAA+TGG | - | chr7.3:75104249-75104268 | MS.gene062413:intron | 45.0% |
| ! | GCCTCATTCATGGTTGATGT+GGG | - | chr7.3:75104167-75104186 | MS.gene062413:intron | 45.0% |
| ! | TCGCGTTTGGCTTAATCAGA+AGG | + | chr7.3:75103860-75103879 | None:intergenic | 45.0% |
| ! | TTTGGGTTCCATCTTGGCTT+TGG | + | chr7.3:75102841-75102860 | None:intergenic | 45.0% |
| !! | AGCCATTTTCAACACAGGGA+TGG | - | chr7.3:75102885-75102904 | MS.gene062413:CDS | 45.0% |
| !! | CCATGGTGCTACTTATTACC+TGG | - | chr7.3:75104295-75104314 | MS.gene062413:CDS | 45.0% |
| !! | CCCATTTTTCTCTTTCCCTG+TGG | - | chr7.3:75103296-75103315 | MS.gene062413:CDS | 45.0% |
| !! | TGTGGTGTTGTCATGGCATT+AGG | + | chr7.3:75103348-75103367 | None:intergenic | 45.0% |
| !! | TTCCATCTTGGCTTTGGTTC+TGG | + | chr7.3:75102835-75102854 | None:intergenic | 45.0% |
| !!! | TGTGGTTTTGGGTTCCATCT+TGG | + | chr7.3:75102847-75102866 | None:intergenic | 45.0% |
| !!! | ATATATTTGTAATTTTTTTA+AGG | + | chr7.3:75103956-75103975 | None:intergenic | 5.0% |
| !!! | TATATTTGTAATTTTTTTAA+GGG | + | chr7.3:75103955-75103974 | None:intergenic | 5.0% |
| AACAGCAACAGGTGCACCAA+TGG | + | chr7.3:75103673-75103692 | None:intergenic | 50.0% | |
| ACAGGTGCACCAATGGTAGT+CGG | + | chr7.3:75103666-75103685 | None:intergenic | 50.0% | |
| ATGGGGAATGGAACAGCAAC+AGG | + | chr7.3:75103684-75103703 | None:intergenic | 50.0% | |
| ATTTGGCGTGGAAGATGGAG+CGG | - | chr7.3:75104118-75104137 | MS.gene062413:intron | 50.0% | |
| CCCCACATCAACCATGAATG+AGG | + | chr7.3:75104171-75104190 | None:intergenic | 50.0% | |
| CTACCAATGCGTCCAACCAA+CGG | - | chr7.3:75101929-75101948 | MS.gene062413:CDS | 50.0% | |
| CTCCAGAACCAAAGCCAAGA+TGG | - | chr7.3:75102830-75102849 | MS.gene062413:CDS | 50.0% | |
| GAGAACTGCTCGATCTCCAA+AGG | + | chr7.3:75104213-75104232 | None:intergenic | 50.0% | |
| GCAGTTCTCTTTGACTCCTC+TGG | - | chr7.3:75104224-75104243 | MS.gene062413:intron | 50.0% | |
| GCCTTGAGAATTCCGTTGGT+TGG | + | chr7.3:75101944-75101963 | None:intergenic | 50.0% | |
| GCTAGGCCAATGTTTGTTCG+AGG | + | chr7.3:75101896-75101915 | None:intergenic | 50.0% | |
| GTGTTTGTCAGGATTTGGCG+TGG | - | chr7.3:75104106-75104125 | MS.gene062413:intron | 50.0% | |
| TCAGGATTTGGCGTGGAAGA+TGG | - | chr7.3:75104113-75104132 | MS.gene062413:intron | 50.0% | |
| TGAGGCCTTGAGAATTCCGT+TGG | + | chr7.3:75101948-75101967 | None:intergenic | 50.0% | |
| TTCTAATTCCCCCGCAGTCT+CGG | - | chr7.3:75103206-75103225 | MS.gene062413:CDS | 50.0% | |
| ! | ACCATGGTGGAGCGAATCAA+GGG | + | chr7.3:75104282-75104301 | None:intergenic | 50.0% |
| ! | ATTCCGTTGGTTGGACGCAT+TGG | + | chr7.3:75101935-75101954 | None:intergenic | 50.0% |
| ! | CCCCATTCATCGGTTAGAAC+TGG | + | chr7.3:75104254-75104273 | None:intergenic | 50.0% |
| ! | CGCCTCATTCATGGTTGATG+TGG | - | chr7.3:75104166-75104185 | MS.gene062413:intron | 50.0% |
| ! | CTGGTTCTCAAAAAGCGGCT+TGG | + | chr7.3:75103888-75103907 | None:intergenic | 50.0% |
| ! | GAGAAAAATGGGGGTGTGGA+TGG | + | chr7.3:75103288-75103307 | None:intergenic | 50.0% |
| ! | GATGACGATGATGAGTTGGG+TGG | + | chr7.3:75103096-75103115 | None:intergenic | 50.0% |
| ! | GGTTAGAACTGGAGTACCAG+AGG | + | chr7.3:75104243-75104262 | None:intergenic | 50.0% |
| !! | CGGCTTGGTAATTTCGCGTT+TGG | + | chr7.3:75103873-75103892 | None:intergenic | 50.0% |
| !!! | GCCGCTTTTTGAGAACCAGA+TGG | - | chr7.3:75103889-75103908 | MS.gene062413:intron | 50.0% |
| !!! | GTTTTGGTTCACCGAGACTG+CGG | + | chr7.3:75103220-75103239 | None:intergenic | 50.0% |
| !!! | TTTTGGTTCACCGAGACTGC+GGG | + | chr7.3:75103219-75103238 | None:intergenic | 50.0% |
| AGGGATGGTGAACCCACCAA+GGG | - | chr7.3:75102900-75102919 | MS.gene062413:CDS | 55.0% | |
| CCAATGGTAGTCGGAGGAAG+AGG | + | chr7.3:75103657-75103676 | None:intergenic | 55.0% | |
| CCTCTTCCTCCGACTACCAT+TGG | - | chr7.3:75103654-75103673 | MS.gene062413:intron | 55.0% | |
| ! | ACCCTTGATTCGCTCCACCA+TGG | - | chr7.3:75104278-75104297 | MS.gene062413:CDS | 55.0% |
| ! | CACCATGGTGGAGCGAATCA+AGG | + | chr7.3:75104283-75104302 | None:intergenic | 55.0% |
| ! | TTTGGTTCACCGAGACTGCG+GGG | + | chr7.3:75103218-75103237 | None:intergenic | 55.0% |
| CAGGGATGGTGAACCCACCA+AGG | - | chr7.3:75102899-75102918 | MS.gene062413:CDS | 60.0% | |
| GATGGTGAACCCACCAAGGG+AGG | - | chr7.3:75102903-75102922 | MS.gene062413:CDS | 60.0% | |
| GGTGCACCAATGGTAGTCGG+AGG | + | chr7.3:75103663-75103682 | None:intergenic | 60.0% | |
| TTGGTTCACCGAGACTGCGG+GGG | + | chr7.3:75103217-75103236 | None:intergenic | 60.0% | |
| TGCGCATTGCACGCGTCCGT+GGG | + | chr7.3:75104026-75104045 | None:intergenic | 65.0% | |
| TTGCGCATTGCACGCGTCCG+TGG | + | chr7.3:75104027-75104046 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 75101886 | 75104355 | 75101886 | ID=MS.gene062413 |
| chr7.3 | mRNA | 75101886 | 75104355 | 75101886 | ID=MS.gene062413.t1;Parent=MS.gene062413 |
| chr7.3 | exon | 75104256 | 75104355 | 75104256 | ID=MS.gene062413.t1.exon1;Parent=MS.gene062413.t1 |
| chr7.3 | CDS | 75104256 | 75104355 | 75104256 | ID=cds.MS.gene062413.t1;Parent=MS.gene062413.t1 |
| chr7.3 | exon | 75102518 | 75103432 | 75102518 | ID=MS.gene062413.t1.exon2;Parent=MS.gene062413.t1 |
| chr7.3 | CDS | 75102518 | 75103432 | 75102518 | ID=cds.MS.gene062413.t1;Parent=MS.gene062413.t1 |
| chr7.3 | exon | 75101886 | 75102124 | 75101886 | ID=MS.gene062413.t1.exon3;Parent=MS.gene062413.t1 |
| chr7.3 | CDS | 75101886 | 75102124 | 75101886 | ID=cds.MS.gene062413.t1;Parent=MS.gene062413.t1 |
| Gene Sequence |
| Protein sequence |
