AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062432

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062432.t1 MTR_7g024670 91.716 338 21 4 1 335 40 373 0.0 551
MS.gene062432.t1 MTR_4g022370 39.803 304 155 9 9 308 55 334 8.31e-49 167
MS.gene062432.t1 MTR_4g063780 41.200 250 100 10 16 252 55 270 3.84e-40 144
MS.gene062432.t1 MTR_2g096740 41.176 238 70 10 16 235 26 211 9.19e-40 142
MS.gene062432.t1 MTR_2g096740 41.176 238 70 10 16 235 41 226 1.15e-39 142
MS.gene062432.t1 MTR_7g059400 36.478 318 156 9 13 323 53 331 4.10e-39 141
MS.gene062432.t1 MTR_8g479350 77.778 63 14 0 39 101 69 131 1.04e-31 122
MS.gene062432.t1 MTR_8g068210 57.143 91 29 1 12 102 16 96 1.00e-30 119
MS.gene062432.t1 MTR_8g079060 59.551 89 29 2 40 122 31 118 2.75e-30 115
MS.gene062432.t1 MTR_4g088580 74.194 62 16 0 39 100 56 117 7.57e-30 117
MS.gene062432.t1 MTR_3g091820 57.609 92 34 1 1 92 11 97 2.96e-29 114
MS.gene062432.t1 MTR_2g014060 56.311 103 37 2 23 118 11 112 3.08e-29 115
MS.gene062432.t1 MTR_8g015840 66.667 75 24 1 20 93 1 75 3.62e-29 112
MS.gene062432.t1 MTR_5g031440 88.000 50 6 0 39 88 44 93 1.21e-28 113
MS.gene062432.t1 MTR_4g109980 86.538 52 7 0 37 88 39 90 1.36e-28 113
MS.gene062432.t1 MTR_3g090430 47.414 116 50 2 37 152 50 154 1.86e-28 112
MS.gene062432.t1 MTR_3g077750 57.955 88 32 2 1 88 29 111 2.18e-28 112
MS.gene062432.t1 MTR_4g461080 83.333 54 9 0 37 90 28 81 3.64e-28 110
MS.gene062432.t1 MTR_8g027295 72.464 69 14 1 40 103 26 94 1.19e-27 109
MS.gene062432.t1 MTR_1g077600 60.274 73 29 0 22 94 27 99 1.79e-27 108
MS.gene062432.t1 MTR_1g077600 60.274 73 29 0 22 94 27 99 1.98e-27 109
MS.gene062432.t1 MTR_2g093220 78.571 56 12 0 37 92 39 94 4.14e-27 108
MS.gene062432.t1 MTR_2g059540 88.000 50 6 0 37 86 30 79 7.40e-27 105
MS.gene062432.t1 MTR_2g014170 86.000 50 7 0 37 86 44 93 1.40e-26 107
MS.gene062432.t1 MTR_1g056810 79.245 53 11 0 40 92 14 66 3.56e-26 105
MS.gene062432.t1 MTR_2g013370 58.333 84 30 2 12 95 23 101 5.28e-26 105
MS.gene062432.t1 MTR_4g089095 78.571 56 10 1 40 95 52 105 1.47e-25 104
MS.gene062432.t1 MTR_4g089095 78.571 56 10 1 40 95 18 71 2.09e-25 103
MS.gene062432.t1 MTR_6g012450 76.471 51 12 0 40 90 138 188 1.10e-23 101
MS.gene062432.t1 MTR_2g016030 76.000 50 12 0 40 89 49 98 1.46e-23 95.5
MS.gene062432.t1 MTR_4g082060 56.962 79 23 2 40 118 124 191 6.75e-23 99.4
MS.gene062432.t1 MTR_7g010950 74.510 51 13 0 40 90 137 187 7.01e-23 99.4
MS.gene062432.t1 MTR_8g044220 69.811 53 16 0 40 92 120 172 1.01e-22 98.6
MS.gene062432.t1 MTR_3g435480 67.213 61 16 1 40 100 138 194 1.57e-22 98.2
MS.gene062432.t1 MTR_6g027450 57.534 73 27 1 18 90 73 141 4.45e-22 95.5
MS.gene062432.t1 MTR_5g041420 70.588 51 15 0 40 90 140 190 6.85e-22 94.7
MS.gene062432.t1 MTR_7g086780 67.241 58 18 1 39 96 100 156 7.43e-22 95.9
MS.gene062432.t1 MTR_5g041530 68.966 58 17 1 40 97 142 198 1.39e-21 94.7
MS.gene062432.t1 MTR_5g041380 45.000 120 51 4 40 153 129 239 2.81e-21 93.6
MS.gene062432.t1 MTR_6g027460 67.308 52 17 0 39 90 97 148 3.07e-21 93.6
MS.gene062432.t1 MTR_5g041400 43.548 124 47 4 40 153 121 231 8.77e-21 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062432.t1 AT3G55370 37.000 300 128 13 4 286 46 301 5.48e-38 139
MS.gene062432.t1 AT3G55370 40.086 232 98 8 4 235 46 236 5.13e-37 135
MS.gene062432.t1 AT3G55370 40.086 232 98 8 4 235 91 281 6.42e-37 136
MS.gene062432.t1 AT2G37590 72.152 79 20 1 16 94 69 145 6.08e-35 130
MS.gene062432.t1 AT1G07640 70.732 82 22 1 14 95 55 134 2.42e-34 129
MS.gene062432.t1 AT1G07640 72.727 77 19 1 19 95 4 78 2.89e-34 127
MS.gene062432.t1 AT1G07640 70.732 82 22 1 14 95 63 142 3.02e-34 128
MS.gene062432.t1 AT5G02460 70.130 77 21 1 16 92 75 149 1.06e-32 125
MS.gene062432.t1 AT2G28810 34.768 302 130 8 22 311 79 325 2.89e-32 123
MS.gene062432.t1 AT2G28810 34.768 302 130 8 22 311 62 308 3.00e-32 123
MS.gene062432.t1 AT1G51700 79.032 62 13 0 39 100 34 95 3.66e-31 116
MS.gene062432.t1 AT5G65590 80.328 61 12 0 39 99 42 102 1.76e-30 118
MS.gene062432.t1 AT5G60200 58.889 90 31 2 37 122 54 141 1.85e-30 116
MS.gene062432.t1 AT1G21340 56.322 87 37 1 10 95 9 95 3.16e-30 115
MS.gene062432.t1 AT2G28510 80.952 63 10 1 37 99 47 107 3.31e-30 116
MS.gene062432.t1 AT5G66940 52.294 109 45 2 40 141 34 142 6.08e-30 114
MS.gene062432.t1 AT5G60850 56.989 93 33 2 28 113 38 130 8.06e-30 116
MS.gene062432.t1 AT3G21270 83.929 56 9 0 39 94 30 85 1.44e-29 112
MS.gene062432.t1 AT3G45610 51.961 102 38 2 1 102 11 101 6.16e-29 112
MS.gene062432.t1 AT5G62940 88.235 51 6 0 38 88 73 123 2.27e-28 113
MS.gene062432.t1 AT4G38000 71.212 66 19 0 39 104 42 107 8.39e-28 109
MS.gene062432.t1 AT3G50410 75.439 57 14 0 40 96 32 88 1.78e-27 108
MS.gene062432.t1 AT1G28310 75.439 57 14 0 39 95 28 84 3.14e-27 109
MS.gene062432.t1 AT1G28310 75.439 57 14 0 39 95 52 108 4.28e-27 109
MS.gene062432.t1 AT3G52440 70.769 65 18 1 34 98 21 84 4.91e-27 107
MS.gene062432.t1 AT3G52440 70.769 65 18 1 34 98 40 103 6.85e-27 107
MS.gene062432.t1 AT4G00940 58.667 75 31 0 18 92 48 122 5.66e-26 105
MS.gene062432.t1 AT4G00940 58.667 75 31 0 18 92 48 122 5.66e-26 105
MS.gene062432.t1 AT4G00940 58.667 75 31 0 18 92 48 122 5.66e-26 105
MS.gene062432.t1 AT3G61850 62.857 70 26 0 40 109 64 133 1.12e-25 104
MS.gene062432.t1 AT3G61850 62.857 70 26 0 40 109 64 133 1.12e-25 104
MS.gene062432.t1 AT3G61850 62.857 70 26 0 40 109 76 145 1.16e-25 104
MS.gene062432.t1 AT4G21050 64.706 68 23 1 37 104 23 89 1.42e-25 102
MS.gene062432.t1 AT3G61850 62.857 70 26 0 40 109 64 133 1.68e-25 104
MS.gene062432.t1 AT3G61850 62.857 70 26 0 40 109 76 145 1.78e-25 104
MS.gene062432.t1 AT4G24060 75.000 56 14 0 37 92 52 107 3.30e-25 104
MS.gene062432.t1 AT1G47655 75.000 52 13 0 35 86 26 77 1.55e-23 96.7
MS.gene062432.t1 AT2G46590 84.783 46 7 0 40 85 70 115 2.75e-23 99.4
MS.gene062432.t1 AT2G46590 84.783 46 7 0 40 85 82 127 2.91e-23 99.4
MS.gene062432.t1 AT3G47500 74.510 51 13 0 40 90 112 162 3.59e-23 100
MS.gene062432.t1 AT1G29160 75.472 53 12 1 40 92 64 115 4.43e-23 94.7
MS.gene062432.t1 AT2G34140 75.472 53 12 1 40 92 60 111 4.86e-23 94.4
MS.gene062432.t1 AT1G64620 76.471 51 12 0 37 87 48 98 6.00e-23 98.2
MS.gene062432.t1 AT1G69570 74.510 51 13 0 40 90 134 184 1.19e-22 97.8
MS.gene062432.t1 AT5G39660 55.000 80 25 2 40 119 140 208 1.74e-22 98.2
MS.gene062432.t1 AT5G39660 55.000 80 25 2 40 119 140 208 1.74e-22 98.2
MS.gene062432.t1 AT5G39660 55.000 80 25 2 40 119 140 208 1.74e-22 98.2
MS.gene062432.t1 AT5G62430 54.167 72 32 1 19 90 36 106 1.87e-22 95.9
MS.gene062432.t1 AT4G21040 51.064 94 35 2 40 133 27 109 6.48e-22 92.8
MS.gene062432.t1 AT1G26790 50.633 79 37 1 12 90 87 163 9.86e-22 95.1
MS.gene062432.t1 AT4G21080 61.538 65 23 1 40 104 27 89 8.41e-21 90.5
MS.gene062432.t1 AT4G21030 57.692 52 22 0 40 91 23 74 2.72e-14 70.9

Find 71 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAACTTGTCGTCGTTAT+TGG 0.174969 7.3:+75381034 MS.gene062432:CDS
GAAATAGTAATGATCTATTT+TGG 0.191335 7.3:+75381739 MS.gene062432:CDS
CAAATTGGATTATTTCAATT+TGG 0.211059 7.3:+75381555 MS.gene062432:CDS
AGTAATTTGCAACCACAAAT+TGG 0.232158 7.3:+75381540 MS.gene062432:CDS
GCAAATTCTTCTTCTAATAA+TGG 0.247534 7.3:+75381219 MS.gene062432:CDS
GTGCTGCTGCAGCATCATTC+TGG 0.303371 7.3:-75380930 None:intergenic
GACCGAAACAAATTTCTTTG+TGG 0.341322 7.3:-75381597 None:intergenic
TGAGGGCATTGGTTCTTTGT+TGG 0.348674 7.3:+75381341 MS.gene062432:CDS
CAATTTGGTGGAGAAAATAA+TGG 0.350809 7.3:+75381570 MS.gene062432:CDS
TGGAGATGATCGTTATGATT+AGG 0.351307 7.3:-75381156 None:intergenic
CTTGGTAGTGGTTCTTCAAT+TGG 0.353175 7.3:+75381408 MS.gene062432:CDS
TGATGAACTTGTAGCGAATT+CGG 0.372887 7.3:-75381489 None:intergenic
CAGGTCGGTGCCGGTGCTGC+TGG 0.390469 7.3:+75381177 MS.gene062432:CDS
AATTGAAATAATCCAATTTG+TGG 0.391831 7.3:-75381552 None:intergenic
CTGTTGGAGGTGGTTGTAGA+AGG 0.393447 7.3:+75381085 MS.gene062432:CDS
AGCCACAAAGAAATTTGTTT+CGG 0.401716 7.3:+75381595 MS.gene062432:CDS
CATTGTTCACCAATGCCATT+TGG 0.402281 7.3:-75381459 None:intergenic
GTGTTTGTTGATTCACATCT+TGG 0.421696 7.3:-75380961 None:intergenic
AAGAAATTTGTTTCGGTCGA+AGG 0.427281 7.3:+75381602 MS.gene062432:CDS
ATTGGATTATTTCAATTTGG+TGG 0.443223 7.3:+75381558 MS.gene062432:CDS
TATTCTTCAAGTGTTAGTAT+TGG 0.447776 7.3:+75381630 MS.gene062432:CDS
CAGCAGCACCGGCACCGACC+TGG 0.456075 7.3:-75381176 None:intergenic
AACCAAAAGCACTAGATTTG+AGG 0.456139 7.3:-75381837 None:intergenic
TCAAGTTAATACAGTTAAAG+TGG 0.456282 7.3:+75381662 MS.gene062432:CDS
GGTTGCAAATTACTCAAGAA+AGG 0.462145 7.3:-75381531 None:intergenic
GTTACAAATGGAAATTGTGT+TGG 0.468460 7.3:-75381282 None:intergenic
CTTCTACAACCACCTCCAAC+AGG 0.475660 7.3:-75381084 None:intergenic
CGAAACGTTCCTGTTGGAGG+TGG 0.475928 7.3:+75381075 MS.gene062432:CDS
TCTTCAATTGGTAATGGTAA+TGG 0.476358 7.3:+75381420 MS.gene062432:CDS
CGATCTAAAGAGGTTACAAA+TGG 0.480214 7.3:-75381294 None:intergenic
AGTGGTTCTTCAATTGGTAA+TGG 0.485640 7.3:+75381414 MS.gene062432:CDS
GCTCGATCGGTCATTGATAC+TGG 0.489149 7.3:-75380889 None:intergenic
CTTCGAAACGTTCCTGTTGG+AGG 0.496892 7.3:+75381072 MS.gene062432:CDS
GTTGAGTTTCAACTTGGTAG+TGG 0.507591 7.3:+75381396 MS.gene062432:CDS
ATACTGGTCTTCTAGACCCT+TGG 0.510341 7.3:-75380873 None:intergenic
AGTTATGTTTCTGAGGGCAT+TGG 0.510514 7.3:+75381330 MS.gene062432:CDS
GTTGCAAATTACTCAAGAAA+GGG 0.514735 7.3:-75381530 None:intergenic
GGAAATTGTGTTGGAAAATG+AGG 0.514769 7.3:-75381273 None:intergenic
GATCATCTCCAGGTCGGTGC+CGG 0.519214 7.3:+75381168 MS.gene062432:CDS
GGCTCTTTGTTGATACCAAA+TGG 0.520108 7.3:+75381444 MS.gene062432:CDS
CGACAATAGTTATGTTTCTG+AGG 0.521037 7.3:+75381323 MS.gene062432:CDS
GACAATAGTTATGTTTCTGA+GGG 0.522293 7.3:+75381324 MS.gene062432:CDS
CTGGTGGTTCTAGCTCAGCA+AGG 0.527734 7.3:+75381196 MS.gene062432:CDS
GAAGCTGATGGCAGCTACCA+AGG 0.530104 7.3:+75380856 MS.gene062432:CDS
GCTAGAACCACCAGCAGCAC+CGG 0.537679 7.3:-75381187 None:intergenic
GCACTTCGAAACGTTCCTGT+TGG 0.543248 7.3:+75381069 MS.gene062432:CDS
ACTTTAACTGTATTAACTTG+AGG 0.543542 7.3:-75381660 None:intergenic
GTCGCTATGACGATCTAAAG+AGG 0.549924 7.3:-75381304 None:intergenic
ACTAATTCTAATGTGAATGT+TGG 0.552195 7.3:+75381246 MS.gene062432:CDS
CAAGGTGGTGAAGTGAAACT+AGG 0.554007 7.3:-75381810 None:intergenic
CACTAGATTTGAGGATCACA+AGG 0.554201 7.3:-75381828 None:intergenic
GTGGAAGAAAACAATCATCA+AGG 0.560168 7.3:+75381681 MS.gene062432:CDS
CTTTGACATCTTAGCTCGAT+CGG 0.562486 7.3:-75380902 None:intergenic
TAATCATAACGATCATCTCC+AGG 0.573464 7.3:+75381158 MS.gene062432:CDS
GTCGGTGCCGGTGCTGCTGG+TGG 0.577708 7.3:+75381180 MS.gene062432:CDS
GTAGCTGCCATCAGCTTCAA+CGG 0.578179 7.3:-75380851 None:intergenic
TCAATTGGTAATGGTAATGG+TGG 0.579040 7.3:+75381423 MS.gene062432:CDS
TCGTTATGATTAGGTTTCAG+AGG 0.584218 7.3:-75381147 None:intergenic
CGTCGTTATTGGACTAGAGG+TGG 0.585783 7.3:+75381045 MS.gene062432:CDS
TCTGTCACCGTTGAAGCTGA+TGG 0.588932 7.3:+75380844 MS.gene062432:CDS
ACTAATGTTGAGTTTCAACT+TGG 0.589155 7.3:+75381390 MS.gene062432:CDS
AAGCTGATGGCAGCTACCAA+GGG 0.593247 7.3:+75380857 MS.gene062432:CDS
CAAATGGCATTGGTGAACAA+TGG 0.594140 7.3:+75381460 MS.gene062432:CDS
TGTCGTCGTTATTGGACTAG+AGG 0.602398 7.3:+75381042 MS.gene062432:CDS
ATGGCATTGGTGAACAATGG+AGG 0.607659 7.3:+75381463 MS.gene062432:CDS
AATGGAAATGGAAATGGAAG+TGG 0.608244 7.3:+75381762 MS.gene062432:CDS
GAAGTGGTAATGAAAATGCA+TGG 0.613061 7.3:+75381778 MS.gene062432:CDS
TTGTTGATACCAAATGGCAT+TGG 0.626903 7.3:+75381450 MS.gene062432:CDS
TGGTGGTTCTAGCTCAGCAA+GGG 0.640666 7.3:+75381197 MS.gene062432:CDS
CATAACGATCATCTCCAGGT+CGG 0.682152 7.3:+75381162 MS.gene062432:CDS
TAGATTTGAGGATCACAAGG+TGG 0.736101 7.3:-75381825 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGAAATAATCCAATTTG+TGG - chr7.3:75381555-75381574 None:intergenic 20.0%
!! CAAATTGGATTATTTCAATT+TGG + chr7.3:75381555-75381574 MS.gene062432:CDS 20.0%
!!! GAAATAGTAATGATCTATTT+TGG + chr7.3:75381739-75381758 MS.gene062432:CDS 20.0%
! ACTAATTCTAATGTGAATGT+TGG + chr7.3:75381246-75381265 MS.gene062432:CDS 25.0%
! ATTGGATTATTTCAATTTGG+TGG + chr7.3:75381558-75381577 MS.gene062432:CDS 25.0%
! GCAAATTCTTCTTCTAATAA+TGG + chr7.3:75381219-75381238 MS.gene062432:CDS 25.0%
! TATTCTTCAAGTGTTAGTAT+TGG + chr7.3:75381630-75381649 MS.gene062432:CDS 25.0%
! TCAAGTTAATACAGTTAAAG+TGG + chr7.3:75381662-75381681 MS.gene062432:CDS 25.0%
!! ACTTTAACTGTATTAACTTG+AGG - chr7.3:75381663-75381682 None:intergenic 25.0%
!! AGTACTATTGCTCATATTTT+TGG - chr7.3:75381367-75381386 None:intergenic 25.0%
!!! AGTAATGATCTATTTTGGAA+TGG + chr7.3:75381744-75381763 MS.gene062432:CDS 25.0%
AAAAATCTCTTGAATGGTTC+AGG + chr7.3:75381717-75381736 MS.gene062432:CDS 30.0%
ACTAATGTTGAGTTTCAACT+TGG + chr7.3:75381390-75381409 MS.gene062432:CDS 30.0%
GTTACAAATGGAAATTGTGT+TGG - chr7.3:75381285-75381304 None:intergenic 30.0%
GTTGCAAATTACTCAAGAAA+GGG - chr7.3:75381533-75381552 None:intergenic 30.0%
TTGCCAAAAAATCTCTTGAA+TGG + chr7.3:75381711-75381730 MS.gene062432:CDS 30.0%
! AGCCACAAAGAAATTTGTTT+CGG + chr7.3:75381595-75381614 MS.gene062432:CDS 30.0%
! AGTAATTTGCAACCACAAAT+TGG + chr7.3:75381540-75381559 MS.gene062432:CDS 30.0%
! CAATTTGGTGGAGAAAATAA+TGG + chr7.3:75381570-75381589 MS.gene062432:CDS 30.0%
! GACAATAGTTATGTTTCTGA+GGG + chr7.3:75381324-75381343 MS.gene062432:CDS 30.0%
!! TCTTCAATTGGTAATGGTAA+TGG + chr7.3:75381420-75381439 MS.gene062432:CDS 30.0%
!!! GAACCATTCAAGAGATTTTT+TGG - chr7.3:75381717-75381736 None:intergenic 30.0%
!!! GATCTATTTTGGAATGGAAA+TGG + chr7.3:75381750-75381769 MS.gene062432:CDS 30.0%
!!! TTTTGGAATGGAAATGGAAA+TGG + chr7.3:75381756-75381775 MS.gene062432:CDS 30.0%
AATGGAAATGGAAATGGAAG+TGG + chr7.3:75381762-75381781 MS.gene062432:CDS 35.0%
AGTGGTTCTTCAATTGGTAA+TGG + chr7.3:75381414-75381433 MS.gene062432:CDS 35.0%
CGATCTAAAGAGGTTACAAA+TGG - chr7.3:75381297-75381316 None:intergenic 35.0%
GACCGAAACAAATTTCTTTG+TGG - chr7.3:75381600-75381619 None:intergenic 35.0%
GGAAATTGTGTTGGAAAATG+AGG - chr7.3:75381276-75381295 None:intergenic 35.0%
GGTTGCAAATTACTCAAGAA+AGG - chr7.3:75381534-75381553 None:intergenic 35.0%
GTGGAAGAAAACAATCATCA+AGG + chr7.3:75381681-75381700 MS.gene062432:CDS 35.0%
TAATCATAACGATCATCTCC+AGG + chr7.3:75381158-75381177 MS.gene062432:CDS 35.0%
TCGTTATGATTAGGTTTCAG+AGG - chr7.3:75381150-75381169 None:intergenic 35.0%
TGATGAACTTGTAGCGAATT+CGG - chr7.3:75381492-75381511 None:intergenic 35.0%
TGGAGATGATCGTTATGATT+AGG - chr7.3:75381159-75381178 None:intergenic 35.0%
TTGTTGATACCAAATGGCAT+TGG + chr7.3:75381450-75381469 MS.gene062432:CDS 35.0%
! AAGAAATTTGTTTCGGTCGA+AGG + chr7.3:75381602-75381621 MS.gene062432:CDS 35.0%
! CGACAATAGTTATGTTTCTG+AGG + chr7.3:75381323-75381342 MS.gene062432:CDS 35.0%
! GAAGTGGTAATGAAAATGCA+TGG + chr7.3:75381778-75381797 MS.gene062432:CDS 35.0%
! GACGACAAGTTTTGCAAAAA+TGG - chr7.3:75381029-75381048 None:intergenic 35.0%
!! GTGTTTGTTGATTCACATCT+TGG - chr7.3:75380964-75380983 None:intergenic 35.0%
!! TCAATTGGTAATGGTAATGG+TGG + chr7.3:75381423-75381442 MS.gene062432:CDS 35.0%
CATTGTTCACCAATGCCATT+TGG - chr7.3:75381462-75381481 None:intergenic 40.0%
CTTTGACATCTTAGCTCGAT+CGG - chr7.3:75380905-75380924 None:intergenic 40.0%
GCAAAACTTGTCGTCGTTAT+TGG + chr7.3:75381034-75381053 MS.gene062432:CDS 40.0%
GGCTCTTTGTTGATACCAAA+TGG + chr7.3:75381444-75381463 MS.gene062432:CDS 40.0%
GTTGAGTTTCAACTTGGTAG+TGG + chr7.3:75381396-75381415 MS.gene062432:CDS 40.0%
TAGATTTGAGGATCACAAGG+TGG - chr7.3:75381828-75381847 None:intergenic 40.0%
! AGTTATGTTTCTGAGGGCAT+TGG + chr7.3:75381330-75381349 MS.gene062432:CDS 40.0%
! CAAGTTTTGCAAAAATGGCG+TGG - chr7.3:75381024-75381043 None:intergenic 40.0%
!! CAAATGGCATTGGTGAACAA+TGG + chr7.3:75381460-75381479 MS.gene062432:CDS 40.0%
!! CTTGGTAGTGGTTCTTCAAT+TGG + chr7.3:75381408-75381427 MS.gene062432:CDS 40.0%
CAAGGTGGTGAAGTGAAACT+AGG - chr7.3:75381813-75381832 None:intergenic 45.0%
CATAACGATCATCTCCAGGT+CGG + chr7.3:75381162-75381181 MS.gene062432:CDS 45.0%
GTCGCTATGACGATCTAAAG+AGG - chr7.3:75381307-75381326 None:intergenic 45.0%
! TGTCGTCGTTATTGGACTAG+AGG + chr7.3:75381042-75381061 MS.gene062432:CDS 45.0%
!! ATACTGGTCTTCTAGACCCT+TGG - chr7.3:75380876-75380895 None:intergenic 45.0%
!! ATGGCATTGGTGAACAATGG+AGG + chr7.3:75381463-75381482 MS.gene062432:CDS 45.0%
!! TGAGGGCATTGGTTCTTTGT+TGG + chr7.3:75381341-75381360 MS.gene062432:CDS 45.0%
AAGCTGATGGCAGCTACCAA+GGG + chr7.3:75380857-75380876 MS.gene062432:CDS 50.0%
CTGTTGGAGGTGGTTGTAGA+AGG + chr7.3:75381085-75381104 MS.gene062432:CDS 50.0%
CTTCGAAACGTTCCTGTTGG+AGG + chr7.3:75381072-75381091 MS.gene062432:CDS 50.0%
CTTCTACAACCACCTCCAAC+AGG - chr7.3:75381087-75381106 None:intergenic 50.0%
GCACTTCGAAACGTTCCTGT+TGG + chr7.3:75381069-75381088 MS.gene062432:CDS 50.0%
GCTCGATCGGTCATTGATAC+TGG - chr7.3:75380892-75380911 None:intergenic 50.0%
GTAGCTGCCATCAGCTTCAA+CGG - chr7.3:75380854-75380873 None:intergenic 50.0%
TCTGTCACCGTTGAAGCTGA+TGG + chr7.3:75380844-75380863 MS.gene062432:CDS 50.0%
! CGTCGTTATTGGACTAGAGG+TGG + chr7.3:75381045-75381064 MS.gene062432:CDS 50.0%
!! TGGTGGTTCTAGCTCAGCAA+GGG + chr7.3:75381197-75381216 MS.gene062432:CDS 50.0%
CGAAACGTTCCTGTTGGAGG+TGG + chr7.3:75381075-75381094 MS.gene062432:CDS 55.0%
GAAGCTGATGGCAGCTACCA+AGG + chr7.3:75380856-75380875 MS.gene062432:CDS 55.0%
! GTGCTGCTGCAGCATCATTC+TGG - chr7.3:75380933-75380952 None:intergenic 55.0%
!! CTGGTGGTTCTAGCTCAGCA+AGG + chr7.3:75381196-75381215 MS.gene062432:CDS 55.0%
GATCATCTCCAGGTCGGTGC+CGG + chr7.3:75381168-75381187 MS.gene062432:CDS 60.0%
GCTAGAACCACCAGCAGCAC+CGG - chr7.3:75381190-75381209 None:intergenic 60.0%
!! CAGCAGCACCGGCACCGACC+TGG - chr7.3:75381179-75381198 None:intergenic 75.0%
!! CAGGTCGGTGCCGGTGCTGC+TGG + chr7.3:75381177-75381196 MS.gene062432:CDS 75.0%
!! GTCGGTGCCGGTGCTGCTGG+TGG + chr7.3:75381180-75381199 MS.gene062432:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 75380841 75381848 75380841 ID=MS.gene062432
chr7.3 mRNA 75380841 75381848 75380841 ID=MS.gene062432.t1;Parent=MS.gene062432
chr7.3 exon 75380841 75381848 75380841 ID=MS.gene062432.t1.exon1;Parent=MS.gene062432.t1
chr7.3 CDS 75380841 75381848 75380841 ID=cds.MS.gene062432.t1;Parent=MS.gene062432.t1
Gene Sequence

>MS.gene062432

ATGTCTGTCACCGTTGAAGCTGATGGCAGCTACCAAGGGTCTAGAAGACCAGTATCAATGACCGATCGAGCTAAGATGTCAAAGATACACCAGAATGATGCTGCAGCAGCACAGAAATGTCCAAGATGTGAATCAACAAACACAAAGTTCTGTTACTACAACAACTACAATCTTTCACAACCACGCCATTTTTGCAAAACTTGTCGTCGTTATTGGACTAGAGGTGGTGCACTTCGAAACGTTCCTGTTGGAGGTGGTTGTAGAAGGAACAACAAAAGAAGAAAAAGTAATTCAGCATCAAAATCACCTCTGAAACCTAATCATAACGATCATCTCCAGGTCGGTGCCGGTGCTGCTGGTGGTTCTAGCTCAGCAAGGGCAAATTCTTCTTCTAATAATGGTTGCACTAATTCTAATGTGAATGTTGGAATGCCTCATTTTCCAACACAATTTCCATTTGTAACCTCTTTAGATCGTCATAGCGACAATAGTTATGTTTCTGAGGGCATTGGTTCTTTGTTGGCCAAAAATATGAGCAATAGTACTACAACTAATGTTGAGTTTCAACTTGGTAGTGGTTCTTCAATTGGTAATGGTAATGGTGGCTCTTTGTTGATACCAAATGGCATTGGTGAACAATGGAGGTTTCCGAATTCGCTACAAGTTCATCAACAACAATATCAACAATTCCCTTTCTTGAGTAATTTGCAACCACAAATTGGATTATTTCAATTTGGTGGAGAAAATAATGGAGAGCCACAAAGAAATTTGTTTCGGTCGAAGGAAACATATTCTTCAAGTGTTAGTATTGGAATGATGCCTCAAGTTAATACAGTTAAAGTGGAAGAAAACAATCATCAAGGTTTGAGTTTGCCAAAAAATCTCTTGAATGGTTCAGGAAATAGTAATGATCTATTTTGGAATGGAAATGGAAATGGAAGTGGTAATGAAAATGCATGGAATGAAGTTCCTAGTTTCACTTCACCACCTTGTGATCCTCAAATCTAG
Protein sequence

>MS.gene062432.t1

MSVTVEADGSYQGSRRPVSMTDRAKMSKIHQNDAAAAQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRRKSNSASKSPLKPNHNDHLQVGAGAAGGSSSARANSSSNNGCTNSNVNVGMPHFPTQFPFVTSLDRHSDNSYVSEGIGSLLAKNMSNSTTTNVEFQLGSGSSIGNGNGGSLLIPNGIGEQWRFPNSLQVHQQQYQQFPFLSNLQPQIGLFQFGGENNGEPQRNLFRSKETYSSSVSIGMMPQVNTVKVEENNHQGLSLPKNLLNGSGNSNDLFWNGNGNGSGNENAWNEVPSFTSPPCDPQI