Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06249.t1 | AES73017.1 | 94.4 | 284 | 16 | 0 | 1 | 284 | 29 | 312 | 1.30E-156 | 562.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06249.t1 | Q8L3W1 | 28.0 | 329 | 165 | 8 | 1 | 271 | 22 | 336 | 1.1e-23 | 112.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06249.t1 | G7J3B6 | 94.4 | 284 | 16 | 0 | 1 | 284 | 29 | 312 | 9.0e-157 | 562.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06249.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06249.t1 | MTR_3g098790 | 94.366 | 284 | 16 | 0 | 1 | 284 | 29 | 312 | 0.0 | 564 |
| MS.gene06249.t1 | MTR_7g050580 | 68.729 | 291 | 82 | 2 | 1 | 291 | 29 | 310 | 3.31e-138 | 393 |
| MS.gene06249.t1 | MTR_7g050710 | 66.096 | 292 | 91 | 2 | 1 | 284 | 29 | 320 | 8.81e-138 | 392 |
| MS.gene06249.t1 | MTR_7g050590 | 66.667 | 294 | 86 | 6 | 1 | 284 | 2 | 293 | 8.12e-131 | 374 |
| MS.gene06249.t1 | MTR_7g050560 | 61.409 | 298 | 92 | 5 | 1 | 291 | 29 | 310 | 9.67e-122 | 351 |
| MS.gene06249.t1 | MTR_7g050720 | 60.616 | 292 | 96 | 8 | 1 | 273 | 26 | 317 | 1.90e-110 | 323 |
| MS.gene06249.t1 | MTR_1g035460 | 35.430 | 302 | 148 | 7 | 1 | 271 | 2 | 287 | 2.17e-48 | 166 |
| MS.gene06249.t1 | MTR_1g108780 | 33.677 | 291 | 160 | 7 | 1 | 271 | 13 | 290 | 4.08e-46 | 161 |
| MS.gene06249.t1 | MTR_8g103940 | 34.589 | 292 | 155 | 9 | 1 | 271 | 55 | 331 | 3.01e-42 | 152 |
| MS.gene06249.t1 | MTR_5g044670 | 30.584 | 291 | 179 | 7 | 1 | 279 | 32 | 311 | 4.24e-37 | 134 |
| MS.gene06249.t1 | MTR_7g050640 | 71.795 | 78 | 22 | 0 | 1 | 78 | 29 | 106 | 7.02e-36 | 125 |
| MS.gene06249.t1 | MTR_3g061320 | 29.329 | 283 | 158 | 8 | 1 | 270 | 26 | 279 | 2.37e-30 | 115 |
| MS.gene06249.t1 | MTR_3g061350 | 30.072 | 276 | 170 | 6 | 1 | 270 | 26 | 284 | 1.79e-29 | 113 |
| MS.gene06249.t1 | MTR_3g061370 | 30.634 | 284 | 158 | 11 | 1 | 270 | 23 | 281 | 4.22e-28 | 109 |
| MS.gene06249.t1 | MTR_3g061340 | 26.829 | 287 | 155 | 8 | 1 | 270 | 26 | 274 | 7.20e-26 | 103 |
| MS.gene06249.t1 | MTR_1g035620 | 28.467 | 274 | 170 | 9 | 1 | 269 | 25 | 277 | 1.11e-24 | 102 |
| MS.gene06249.t1 | MTR_3g061310 | 28.000 | 275 | 178 | 9 | 1 | 270 | 26 | 285 | 1.18e-24 | 100 |
| MS.gene06249.t1 | MTR_3g005490 | 26.182 | 275 | 153 | 6 | 1 | 274 | 37 | 262 | 1.62e-23 | 97.1 |
| MS.gene06249.t1 | MTR_1g035570 | 30.282 | 284 | 168 | 8 | 1 | 271 | 21 | 287 | 3.03e-23 | 98.6 |
| MS.gene06249.t1 | MTR_1g021400 | 27.160 | 324 | 179 | 11 | 1 | 279 | 46 | 357 | 5.79e-23 | 97.4 |
| MS.gene06249.t1 | MTR_1g035640 | 29.749 | 279 | 165 | 7 | 1 | 269 | 21 | 278 | 2.36e-22 | 96.7 |
| MS.gene06249.t1 | MTR_1g050845 | 30.182 | 275 | 152 | 10 | 1 | 269 | 25 | 265 | 2.57e-22 | 97.4 |
| MS.gene06249.t1 | MTR_3g005480 | 27.338 | 278 | 147 | 9 | 1 | 274 | 37 | 263 | 3.61e-22 | 93.6 |
| MS.gene06249.t1 | MTR_3g005420 | 27.737 | 274 | 159 | 8 | 1 | 274 | 305 | 539 | 1.24e-21 | 95.1 |
| MS.gene06249.t1 | MTR_6g043890 | 30.204 | 245 | 132 | 7 | 34 | 257 | 65 | 291 | 2.96e-21 | 92.4 |
| MS.gene06249.t1 | MTR_3g061330 | 47.561 | 82 | 43 | 0 | 1 | 82 | 26 | 107 | 4.36e-21 | 90.1 |
| MS.gene06249.t1 | MTR_1g021410 | 25.392 | 319 | 175 | 10 | 1 | 270 | 38 | 342 | 4.81e-21 | 92.0 |
| MS.gene06249.t1 | MTR_1g021360 | 26.897 | 290 | 187 | 8 | 1 | 278 | 198 | 474 | 8.61e-21 | 92.4 |
| MS.gene06249.t1 | MTR_5g070440 | 26.354 | 277 | 159 | 8 | 1 | 274 | 37 | 271 | 1.06e-20 | 89.7 |
| MS.gene06249.t1 | MTR_4g119990 | 29.167 | 288 | 179 | 10 | 1 | 270 | 31 | 311 | 7.71e-19 | 85.9 |
| MS.gene06249.t1 | MTR_4g068320 | 38.583 | 127 | 70 | 3 | 162 | 288 | 285 | 403 | 8.32e-19 | 86.3 |
| MS.gene06249.t1 | MTR_4g068320 | 38.542 | 96 | 57 | 1 | 1 | 94 | 22 | 117 | 5.49e-15 | 75.1 |
| MS.gene06249.t1 | MTR_1g021440 | 24.926 | 337 | 179 | 10 | 1 | 276 | 38 | 361 | 1.30e-18 | 85.5 |
| MS.gene06249.t1 | MTR_1g021380 | 25.796 | 314 | 166 | 10 | 1 | 269 | 37 | 328 | 1.80e-18 | 84.7 |
| MS.gene06249.t1 | MTR_3g061290 | 45.122 | 82 | 45 | 0 | 1 | 82 | 26 | 107 | 2.08e-18 | 82.0 |
| MS.gene06249.t1 | MTR_3g005495 | 29.070 | 258 | 128 | 8 | 1 | 258 | 259 | 461 | 3.57e-18 | 84.7 |
| MS.gene06249.t1 | MTR_3g005495 | 31.967 | 122 | 76 | 2 | 1 | 115 | 29 | 150 | 2.49e-15 | 76.3 |
| MS.gene06249.t1 | MTR_6g061070 | 27.027 | 296 | 182 | 10 | 1 | 270 | 34 | 321 | 3.60e-18 | 84.7 |
| MS.gene06249.t1 | MTR_1g035520 | 26.797 | 306 | 176 | 9 | 1 | 269 | 88 | 382 | 3.89e-18 | 84.0 |
| MS.gene06249.t1 | MTR_1g034240 | 34.459 | 148 | 87 | 3 | 147 | 290 | 274 | 415 | 4.62e-18 | 84.0 |
| MS.gene06249.t1 | MTR_1g034240 | 39.024 | 82 | 50 | 0 | 1 | 82 | 23 | 104 | 1.71e-15 | 76.6 |
| MS.gene06249.t1 | MTR_3g005460 | 25.180 | 278 | 169 | 7 | 1 | 274 | 278 | 520 | 6.47e-18 | 84.0 |
| MS.gene06249.t1 | MTR_3g005460 | 31.405 | 121 | 80 | 2 | 1 | 119 | 41 | 160 | 1.30e-14 | 74.3 |
| MS.gene06249.t1 | MTR_1g021435 | 25.078 | 319 | 185 | 9 | 1 | 269 | 38 | 352 | 9.02e-18 | 82.8 |
| MS.gene06249.t1 | MTR_1g021350 | 25.559 | 313 | 178 | 11 | 1 | 279 | 37 | 328 | 7.42e-16 | 77.0 |
| MS.gene06249.t1 | MTR_1g035490 | 35.433 | 127 | 75 | 4 | 147 | 271 | 75 | 196 | 2.65e-13 | 69.7 |
| MS.gene06249.t1 | MTR_3g005440 | 35.294 | 85 | 55 | 0 | 1 | 85 | 36 | 120 | 6.14e-13 | 68.9 |
| MS.gene06249.t1 | MTR_3g005440 | 35.714 | 98 | 63 | 0 | 4 | 101 | 261 | 358 | 3.70e-11 | 63.5 |
| MS.gene06249.t1 | MTR_1g035480 | 35.780 | 109 | 65 | 3 | 1 | 107 | 33 | 138 | 3.22e-12 | 64.3 |
| MS.gene06249.t1 | MTR_1g034210 | 35.165 | 91 | 58 | 1 | 1 | 90 | 23 | 113 | 4.23e-12 | 65.9 |
| MS.gene06249.t1 | MTR_1g034210 | 35.165 | 91 | 58 | 1 | 1 | 90 | 23 | 113 | 6.07e-12 | 65.9 |
| MS.gene06249.t1 | MTR_1g035650 | 29.947 | 187 | 122 | 5 | 1 | 186 | 25 | 203 | 1.63e-11 | 62.8 |
| MS.gene06249.t1 | MTR_3g061220 | 37.805 | 82 | 38 | 1 | 1 | 82 | 26 | 94 | 1.80e-11 | 60.5 |
| MS.gene06249.t1 | MTR_1g035500 | 34.862 | 109 | 66 | 3 | 1 | 107 | 41 | 146 | 4.50e-11 | 61.2 |
| MS.gene06249.t1 | MTR_1g021440 | 36.000 | 75 | 48 | 0 | 1 | 75 | 38 | 112 | 4.59e-11 | 62.8 |
| MS.gene06249.t1 | MTR_1g021440 | 36.000 | 75 | 48 | 0 | 1 | 75 | 38 | 112 | 4.62e-11 | 62.8 |
| MS.gene06249.t1 | MTR_1g021440 | 36.000 | 75 | 48 | 0 | 1 | 75 | 38 | 112 | 9.00e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06249.t1 | AT3G18990 | 28.012 | 332 | 167 | 8 | 1 | 274 | 22 | 339 | 3.99e-30 | 117 |
| MS.gene06249.t1 | AT3G18990 | 27.964 | 329 | 165 | 8 | 1 | 271 | 22 | 336 | 5.53e-30 | 116 |
| MS.gene06249.t1 | AT1G49475 | 43.529 | 85 | 47 | 1 | 1 | 85 | 50 | 133 | 9.78e-17 | 77.0 |
| MS.gene06249.t1 | AT4G01580 | 42.045 | 88 | 51 | 0 | 1 | 88 | 46 | 133 | 1.19e-16 | 77.0 |
| MS.gene06249.t1 | AT3G18960 | 40.909 | 88 | 52 | 0 | 1 | 88 | 9 | 96 | 8.53e-16 | 73.9 |
| MS.gene06249.t1 | AT3G18960 | 40.909 | 88 | 52 | 0 | 1 | 88 | 46 | 133 | 1.12e-15 | 74.3 |
| MS.gene06249.t1 | AT3G18960 | 40.909 | 88 | 52 | 0 | 1 | 88 | 46 | 133 | 1.34e-15 | 74.3 |
| MS.gene06249.t1 | AT1G49480 | 28.962 | 183 | 109 | 6 | 89 | 271 | 60 | 221 | 5.38e-13 | 67.4 |
| MS.gene06249.t1 | AT1G49480 | 28.962 | 183 | 109 | 6 | 89 | 271 | 60 | 221 | 5.38e-13 | 67.4 |
| MS.gene06249.t1 | AT1G49480 | 28.962 | 183 | 109 | 6 | 89 | 271 | 60 | 221 | 5.38e-13 | 67.4 |
Find 51 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAATTGGAAATTAAATT+TGG | 0.186782 | 3.1:+78719443 | MS.gene06249:CDS |
| TATTTCTCCACAAGCTTTCT+TGG | 0.203077 | 3.1:-78719375 | None:intergenic |
| GCTAACTCCTCCTTTGAAAT+TGG | 0.203833 | 3.1:+78719714 | MS.gene06249:CDS |
| CAAAGATGTGCACATGAAAA+AGG | 0.205065 | 3.1:-78719572 | None:intergenic |
| CTTTCCAAGTTCATATATTC+AGG | 0.253552 | 3.1:+78721185 | MS.gene06249:CDS |
| ATTGAGTAGCTTCTTTCATT+TGG | 0.267478 | 3.1:-78721335 | None:intergenic |
| GACAAGAGTTGAAGCTAAAA+AGG | 0.273172 | 3.1:+78719626 | MS.gene06249:CDS |
| AGACTCCAAATGGTGTAAAT+TGG | 0.312711 | 3.1:+78719430 | MS.gene06249:CDS |
| AATTTCCAATTTACACCATT+TGG | 0.315099 | 3.1:-78719435 | None:intergenic |
| AGAAAGCTTGTGGAGAAATA+TGG | 0.315667 | 3.1:+78719378 | MS.gene06249:CDS |
| TGCAACTTACCAGAAGAAAA+TGG | 0.347556 | 3.1:-78720568 | None:intergenic |
| ATCCTGATTCGGTACTTTGC+AGG | 0.347997 | 3.1:-78721046 | None:intergenic |
| TTGAGTAGCTTCTTTCATTT+GGG | 0.352726 | 3.1:-78721334 | None:intergenic |
| CTACAATCTTCATTATTTGA+AGG | 0.379644 | 3.1:-78719672 | None:intergenic |
| AAGTGTCAAATGGCAGAGTT+TGG | 0.384047 | 3.1:+78721023 | MS.gene06249:CDS |
| TTATCAGCATCAACAATCAT+TGG | 0.392502 | 3.1:-78720461 | None:intergenic |
| GGCCTGCAAAGTACCGAATC+AGG | 0.422243 | 3.1:+78721044 | MS.gene06249:CDS |
| TGGCAAAATATGGTTTCAAA+AGG | 0.425042 | 3.1:+78719476 | MS.gene06249:CDS |
| TCCATCCTTTGTTGTTGTCA+TGG | 0.427556 | 3.1:+78720526 | MS.gene06249:CDS |
| GCAGTAGTTGTGTTAATGTT+CGG | 0.444915 | 3.1:+78719739 | MS.gene06249:CDS |
| CCATCCTTTGTTGTTGTCAT+GGG | 0.446533 | 3.1:+78720527 | MS.gene06249:CDS |
| TTAGCTTCAACTCTTGTCAA+AGG | 0.484921 | 3.1:-78719621 | None:intergenic |
| TAGCTTCAACTCTTGTCAAA+GGG | 0.493656 | 3.1:-78719620 | None:intergenic |
| CTTTCTGTCAATATGATGTA+CGG | 0.494299 | 3.1:-78719778 | None:intergenic |
| GAAGACAATAACTTGAAAGT+TGG | 0.499244 | 3.1:+78721121 | MS.gene06249:CDS |
| ACATGTGTAAAGACTCCAAA+TGG | 0.500501 | 3.1:+78719420 | MS.gene06249:CDS |
| TCTCCCTGAATATATGAACT+TGG | 0.502600 | 3.1:-78721189 | None:intergenic |
| CGTACATCATATTGACAGAA+AGG | 0.506265 | 3.1:+78719779 | MS.gene06249:CDS |
| CATCTTTGATAAGAGTGCCT+TGG | 0.514558 | 3.1:+78719587 | MS.gene06249:CDS |
| AAATATGGTTTCAAAAGGGA+TGG | 0.524548 | 3.1:+78719481 | MS.gene06249:CDS |
| CATATTGACAGAAAGGGAAA+AGG | 0.525115 | 3.1:+78719786 | MS.gene06249:CDS |
| TAATGTTCGGAAATTTCAAA+AGG | 0.529933 | 3.1:+78719752 | MS.gene06249:CDS |
| CAGACTATACCGTCTATGTT+CGG | 0.532014 | 3.1:+78720953 | MS.gene06249:intron |
| GGACTAAGATTTGAACTCTC+AGG | 0.534942 | 3.1:+78721079 | MS.gene06249:CDS |
| GGCAAAATATGGTTTCAAAA+GGG | 0.535267 | 3.1:+78719477 | MS.gene06249:CDS |
| TTTCCAAGTTCATATATTCA+GGG | 0.536079 | 3.1:+78721186 | MS.gene06249:CDS |
| ACTACTGCTTCCAATTTCAA+AGG | 0.542132 | 3.1:-78719724 | None:intergenic |
| GTACATCATATTGACAGAAA+GGG | 0.549586 | 3.1:+78719780 | MS.gene06249:CDS |
| CTGTGTAGGACATCCTGATT+CGG | 0.552002 | 3.1:-78721057 | None:intergenic |
| CAAAGGGCTATTTATCTCCA+AGG | 0.557179 | 3.1:-78719604 | None:intergenic |
| GATTTGAACTCTCAGGTGGA+TGG | 0.563558 | 3.1:+78721086 | MS.gene06249:CDS |
| CCCATGACAACAACAAAGGA+TGG | 0.571041 | 3.1:-78720527 | None:intergenic |
| GAGTATCATTCTCTAGCTCA+TGG | 0.575939 | 3.1:+78719516 | MS.gene06249:CDS |
| GATGATGCCAAGAAAGCTTG+TGG | 0.596116 | 3.1:+78719368 | None:intergenic |
| TTTAATTTGAATAAGAAGCG+AGG | 0.603085 | 3.1:+78720986 | MS.gene06249:CDS |
| ACTGCTTCCAATTTCAAAGG+AGG | 0.612452 | 3.1:-78719721 | None:intergenic |
| CTAAGATTTGAACTCTCAGG+TGG | 0.618080 | 3.1:+78721082 | MS.gene06249:CDS |
| TTCAAATCTTAGTCCTGTGT+AGG | 0.640354 | 3.1:-78721071 | None:intergenic |
| TGTCTCTTACCGAACATAGA+CGG | 0.669663 | 3.1:-78720962 | None:intergenic |
| CGAATCAGGATGTCCTACAC+AGG | 0.677734 | 3.1:+78721058 | MS.gene06249:CDS |
| TGCACCCATGACAACAACAA+AGG | 0.693553 | 3.1:-78720531 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTAAATTGGAAATTAAATT+TGG | + | chr3.1:78719443-78719462 | MS.gene06249:CDS | 15.0% |
| !!! | AAGTTGATTTTAACATTTTT+TGG | + | chr3.1:78720005-78720024 | MS.gene06249:intron | 15.0% |
| !!! | TTATTATTCAACTCATTTTT+AGG | + | chr3.1:78720125-78720144 | MS.gene06249:intron | 15.0% |
| !!! | TTCATGTTATCATTTTTAAA+TGG | + | chr3.1:78719876-78719895 | MS.gene06249:intron | 15.0% |
| !! | ACAACTAAATATCTACTTTA+TGG | + | chr3.1:78720412-78720431 | MS.gene06249:intron | 20.0% |
| !! | CATATCAAAGTAAGATTAAT+TGG | + | chr3.1:78721239-78721258 | MS.gene06249:intron | 20.0% |
| !! | CTCCATTAAGAAATATATAT+TGG | + | chr3.1:78720656-78720675 | MS.gene06249:intron | 20.0% |
| !! | GACCAATATATATTTCTTAA+TGG | - | chr3.1:78720661-78720680 | None:intergenic | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | + | chr3.1:78719456-78719475 | MS.gene06249:CDS | 20.0% |
| !! | TTCTTTCATATTTAAAAAGC+AGG | - | chr3.1:78719548-78719567 | None:intergenic | 20.0% |
| !!! | ATGAATTGATTTAGTAAAGA+TGG | - | chr3.1:78720361-78720380 | None:intergenic | 20.0% |
| !!! | ATTGATTTTGTTTCTATAGT+TGG | + | chr3.1:78720042-78720061 | MS.gene06249:intron | 20.0% |
| ! | AATTTCCAATTTACACCATT+TGG | - | chr3.1:78719438-78719457 | None:intergenic | 25.0% |
| ! | CTACAATCTTCATTATTTGA+AGG | - | chr3.1:78719675-78719694 | None:intergenic | 25.0% |
| ! | GTAAGTTGCAAAGATAAATT+TGG | + | chr3.1:78720581-78720600 | MS.gene06249:intron | 25.0% |
| ! | TAAAAAGTGATGGCAAAATA+TGG | + | chr3.1:78719466-78719485 | MS.gene06249:CDS | 25.0% |
| ! | TAATGTTCGGAAATTTCAAA+AGG | + | chr3.1:78719752-78719771 | MS.gene06249:CDS | 25.0% |
| ! | TTTCCAAGTTCATATATTCA+GGG | + | chr3.1:78721186-78721205 | MS.gene06249:CDS | 25.0% |
| ! | TTTCTTAATGGAGAAAGATT+TGG | - | chr3.1:78720649-78720668 | None:intergenic | 25.0% |
| !!! | AAGATGGTTTTAGTTAAAAG+TGG | - | chr3.1:78720345-78720364 | None:intergenic | 25.0% |
| !!! | ATTCATTTTCAAGTGTCAAA+TGG | + | chr3.1:78721013-78721032 | MS.gene06249:CDS | 25.0% |
| !!! | TTTAATTTGAATAAGAAGCG+AGG | + | chr3.1:78720986-78721005 | MS.gene06249:CDS | 25.0% |
| AAAGATGTGCACATGAAAAA+GGG | - | chr3.1:78719574-78719593 | None:intergenic | 30.0% | |
| AAATATGGTTTCAAAAGGGA+TGG | + | chr3.1:78719481-78719500 | MS.gene06249:CDS | 30.0% | |
| ATTGAGTAGCTTCTTTCATT+TGG | - | chr3.1:78721338-78721357 | None:intergenic | 30.0% | |
| CATATTTAAAAAGCAGGAGA+TGG | - | chr3.1:78719542-78719561 | None:intergenic | 30.0% | |
| CTTTCCAAGTTCATATATTC+AGG | + | chr3.1:78721185-78721204 | MS.gene06249:CDS | 30.0% | |
| CTTTCTGTCAATATGATGTA+CGG | - | chr3.1:78719781-78719800 | None:intergenic | 30.0% | |
| GAAGACAATAACTTGAAAGT+TGG | + | chr3.1:78721121-78721140 | MS.gene06249:CDS | 30.0% | |
| GGCAAAATATGGTTTCAAAA+GGG | + | chr3.1:78719477-78719496 | MS.gene06249:CDS | 30.0% | |
| GTACATCATATTGACAGAAA+GGG | + | chr3.1:78719780-78719799 | MS.gene06249:CDS | 30.0% | |
| TGGCAAAATATGGTTTCAAA+AGG | + | chr3.1:78719476-78719495 | MS.gene06249:CDS | 30.0% | |
| TTATACCTAGAGTTAACATG+AGG | - | chr3.1:78719908-78719927 | None:intergenic | 30.0% | |
| TTATCAGCATCAACAATCAT+TGG | - | chr3.1:78720464-78720483 | None:intergenic | 30.0% | |
| TTGAGTAGCTTCTTTCATTT+GGG | - | chr3.1:78721337-78721356 | None:intergenic | 30.0% | |
| TTGAGTGCAAAAATCATCTT+TGG | - | chr3.1:78720103-78720122 | None:intergenic | 30.0% | |
| TTGAGTGTAAAATTCACTCT+TGG | - | chr3.1:78720262-78720281 | None:intergenic | 30.0% | |
| ! | ATTGACTTTGTCTCAAGAAT+TGG | + | chr3.1:78720202-78720221 | MS.gene06249:intron | 30.0% |
| ! | GATTGTGAAGTGTTTATGTT+TGG | - | chr3.1:78720319-78720338 | None:intergenic | 30.0% |
| ! | GATTTGGTTATTGATGTTGT+TGG | - | chr3.1:78720633-78720652 | None:intergenic | 30.0% |
| ! | GTCTTTACACATGTAGTTTT+CGG | - | chr3.1:78719414-78719433 | None:intergenic | 30.0% |
| ! | TGGCATTTTTATTGTGTGTT+TGG | + | chr3.1:78719944-78719963 | MS.gene06249:intron | 30.0% |
| AAAAAGGTCTTCAACTGTCA+AGG | + | chr3.1:78719642-78719661 | MS.gene06249:CDS | 35.0% | |
| ACATGTGTAAAGACTCCAAA+TGG | + | chr3.1:78719420-78719439 | MS.gene06249:CDS | 35.0% | |
| ACTACTGCTTCCAATTTCAA+AGG | - | chr3.1:78719727-78719746 | None:intergenic | 35.0% | |
| AGAAAGCTTGTGGAGAAATA+TGG | + | chr3.1:78719378-78719397 | MS.gene06249:CDS | 35.0% | |
| AGACTCCAAATGGTGTAAAT+TGG | + | chr3.1:78719430-78719449 | MS.gene06249:CDS | 35.0% | |
| ATAACCATGTGGAAAATGAC+TGG | + | chr3.1:78719924-78719943 | MS.gene06249:intron | 35.0% | |
| ATGTACCTCATGTTAACTCT+AGG | + | chr3.1:78719900-78719919 | MS.gene06249:intron | 35.0% | |
| CAAAGATGTGCACATGAAAA+AGG | - | chr3.1:78719575-78719594 | None:intergenic | 35.0% | |
| CATATTGACAGAAAGGGAAA+AGG | + | chr3.1:78719786-78719805 | MS.gene06249:CDS | 35.0% | |
| CGTACATCATATTGACAGAA+AGG | + | chr3.1:78719779-78719798 | MS.gene06249:CDS | 35.0% | |
| GACAAGAGTTGAAGCTAAAA+AGG | + | chr3.1:78719626-78719645 | MS.gene06249:CDS | 35.0% | |
| GCAGTAGTTGTGTTAATGTT+CGG | + | chr3.1:78719739-78719758 | MS.gene06249:CDS | 35.0% | |
| TAACTCTAGGTATAACCATG+TGG | + | chr3.1:78719913-78719932 | MS.gene06249:intron | 35.0% | |
| TAGCTTCAACTCTTGTCAAA+GGG | - | chr3.1:78719623-78719642 | None:intergenic | 35.0% | |
| TATTTCTCCACAAGCTTTCT+TGG | - | chr3.1:78719378-78719397 | None:intergenic | 35.0% | |
| TCTCCCTGAATATATGAACT+TGG | - | chr3.1:78721192-78721211 | None:intergenic | 35.0% | |
| TGCAACTTACCAGAAGAAAA+TGG | - | chr3.1:78720571-78720590 | None:intergenic | 35.0% | |
| TGGGAAAATTCTGCATAAAG+TGG | - | chr3.1:78721318-78721337 | None:intergenic | 35.0% | |
| TTAGCTTCAACTCTTGTCAA+AGG | - | chr3.1:78719624-78719643 | None:intergenic | 35.0% | |
| TTCAAATCTTAGTCCTGTGT+AGG | - | chr3.1:78721074-78721093 | None:intergenic | 35.0% | |
| ! | CATTTGCCTTTTCTTTTGCT+TGG | + | chr3.1:78720930-78720949 | MS.gene06249:intron | 35.0% |
| ! | GTTTTCCTGCAAAATCGAAA+TGG | - | chr3.1:78720442-78720461 | None:intergenic | 35.0% |
| ! | TCACGTATAAGTGAGTTGAA+CGG | - | chr3.1:78720290-78720309 | None:intergenic | 35.0% |
| AAGTGTCAAATGGCAGAGTT+TGG | + | chr3.1:78721023-78721042 | MS.gene06249:CDS | 40.0% | |
| ACTGCTTCCAATTTCAAAGG+AGG | - | chr3.1:78719724-78719743 | None:intergenic | 40.0% | |
| AGTCTGCCAAGCAAAAGAAA+AGG | - | chr3.1:78720939-78720958 | None:intergenic | 40.0% | |
| CAAAGGGCTATTTATCTCCA+AGG | - | chr3.1:78719607-78719626 | None:intergenic | 40.0% | |
| CAGACTATACCGTCTATGTT+CGG | + | chr3.1:78720953-78720972 | MS.gene06249:intron | 40.0% | |
| CCATTTCACGTTCAACTCAT+CGG | + | chr3.1:78720168-78720187 | MS.gene06249:intron | 40.0% | |
| CTAAGATTTGAACTCTCAGG+TGG | + | chr3.1:78721082-78721101 | MS.gene06249:CDS | 40.0% | |
| GGACTAAGATTTGAACTCTC+AGG | + | chr3.1:78721079-78721098 | MS.gene06249:CDS | 40.0% | |
| TGTCTCTTACCGAACATAGA+CGG | - | chr3.1:78720965-78720984 | None:intergenic | 40.0% | |
| ! | GAGTATCATTCTCTAGCTCA+TGG | + | chr3.1:78719516-78719535 | MS.gene06249:CDS | 40.0% |
| ! | GTGTTCCATTTCGATTTTGC+AGG | + | chr3.1:78720434-78720453 | MS.gene06249:intron | 40.0% |
| ! | TGTGTGTTTGGTTTCACAGT+GGG | + | chr3.1:78719956-78719975 | MS.gene06249:intron | 40.0% |
| ! | TTGTGTGTTTGGTTTCACAG+TGG | + | chr3.1:78719955-78719974 | MS.gene06249:intron | 40.0% |
| !! | AATGCCAGTCATTTTCCACA+TGG | - | chr3.1:78719931-78719950 | None:intergenic | 40.0% |
| !! | CATCTTTGATAAGAGTGCCT+TGG | + | chr3.1:78719587-78719606 | MS.gene06249:CDS | 40.0% |
| !! | CCATCCTTTGTTGTTGTCAT+GGG | + | chr3.1:78720527-78720546 | MS.gene06249:CDS | 40.0% |
| !! | GCTAACTCCTCCTTTGAAAT+TGG | + | chr3.1:78719714-78719733 | MS.gene06249:CDS | 40.0% |
| !! | TCCATCCTTTGTTGTTGTCA+TGG | + | chr3.1:78720526-78720545 | MS.gene06249:CDS | 40.0% |
| CCCATGACAACAACAAAGGA+TGG | - | chr3.1:78720530-78720549 | None:intergenic | 45.0% | |
| CTGTGTAGGACATCCTGATT+CGG | - | chr3.1:78721060-78721079 | None:intergenic | 45.0% | |
| GATTTGAACTCTCAGGTGGA+TGG | + | chr3.1:78721086-78721105 | MS.gene06249:CDS | 45.0% | |
| TGCACCCATGACAACAACAA+AGG | - | chr3.1:78720534-78720553 | None:intergenic | 45.0% | |
| ! | CCGATGAGTTGAACGTGAAA+TGG | - | chr3.1:78720171-78720190 | None:intergenic | 45.0% |
| ! | CGTTGAGCACCATTTTCTTC+TGG | + | chr3.1:78720559-78720578 | MS.gene06249:CDS | 45.0% |
| ! | GTGTGTTTGGTTTCACAGTG+GGG | + | chr3.1:78719957-78719976 | MS.gene06249:intron | 45.0% |
| !! | ATCCTGATTCGGTACTTTGC+AGG | - | chr3.1:78721049-78721068 | None:intergenic | 45.0% |
| !!! | TTTTTTATGTTTATAAAAAT+TGG | - | chr3.1:78720390-78720409 | None:intergenic | 5.0% |
| ACAGTGGGGAGAGTCAAAAG+TGG | + | chr3.1:78719971-78719990 | MS.gene06249:intron | 50.0% | |
| CGAATCAGGATGTCCTACAC+AGG | + | chr3.1:78721058-78721077 | MS.gene06249:CDS | 50.0% | |
| !! | GGCCTGCAAAGTACCGAATC+AGG | + | chr3.1:78721044-78721063 | MS.gene06249:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 78719372 | 78721359 | 78719372 | ID=MS.gene06249 |
| chr3.1 | mRNA | 78719372 | 78721359 | 78719372 | ID=MS.gene06249.t1;Parent=MS.gene06249 |
| chr3.1 | exon | 78719372 | 78719807 | 78719372 | ID=MS.gene06249.t1.exon1;Parent=MS.gene06249.t1 |
| chr3.1 | CDS | 78719372 | 78719807 | 78719372 | ID=cds.MS.gene06249.t1;Parent=MS.gene06249.t1 |
| chr3.1 | exon | 78720456 | 78720580 | 78720456 | ID=MS.gene06249.t1.exon2;Parent=MS.gene06249.t1 |
| chr3.1 | CDS | 78720456 | 78720580 | 78720456 | ID=cds.MS.gene06249.t1;Parent=MS.gene06249.t1 |
| chr3.1 | exon | 78720956 | 78721247 | 78720956 | ID=MS.gene06249.t1.exon3;Parent=MS.gene06249.t1 |
| chr3.1 | CDS | 78720956 | 78721247 | 78720956 | ID=cds.MS.gene06249.t1;Parent=MS.gene06249.t1 |
| chr3.1 | exon | 78721328 | 78721359 | 78721328 | ID=MS.gene06249.t1.exon4;Parent=MS.gene06249.t1 |
| chr3.1 | CDS | 78721328 | 78721359 | 78721328 | ID=cds.MS.gene06249.t1;Parent=MS.gene06249.t1 |
| Gene Sequence |
| Protein sequence |
