Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062541.t1 | XP_013445823.1 | 88.7 | 238 | 24 | 1 | 4 | 241 | 50 | 284 | 3.50E-75 | 291.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062541.t1 | Q940J1 | 77.4 | 62 | 14 | 0 | 46 | 107 | 59 | 120 | 2.3e-19 | 97.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062541.t1 | A0A072TQU2 | 88.7 | 238 | 24 | 1 | 4 | 241 | 50 | 284 | 2.5e-75 | 291.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene062541.t1 | TF | HB-HD-ZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062541.t1 | MTR_8g469430 | 91.176 | 238 | 18 | 1 | 4 | 241 | 50 | 284 | 1.57e-149 | 418 |
MS.gene062541.t1 | MTR_5g038280 | 54.930 | 284 | 76 | 8 | 4 | 241 | 45 | 322 | 6.27e-88 | 263 |
MS.gene062541.t1 | MTR_4g107650 | 41.319 | 288 | 112 | 7 | 1 | 241 | 56 | 333 | 1.04e-51 | 171 |
MS.gene062541.t1 | MTR_6g007647 | 67.677 | 99 | 32 | 0 | 44 | 142 | 31 | 129 | 2.20e-40 | 139 |
MS.gene062541.t1 | MTR_6g007647 | 67.677 | 99 | 32 | 0 | 44 | 142 | 65 | 163 | 8.80e-40 | 139 |
MS.gene062541.t1 | MTR_8g089895 | 49.080 | 163 | 66 | 3 | 38 | 183 | 45 | 207 | 1.67e-39 | 139 |
MS.gene062541.t1 | MTR_3g086790 | 58.772 | 114 | 47 | 0 | 42 | 155 | 56 | 169 | 6.75e-37 | 132 |
MS.gene062541.t1 | MTR_8g468210 | 52.206 | 136 | 61 | 1 | 6 | 141 | 41 | 172 | 5.13e-36 | 129 |
MS.gene062541.t1 | MTR_3g080100 | 60.577 | 104 | 41 | 0 | 46 | 149 | 20 | 123 | 9.76e-36 | 126 |
MS.gene062541.t1 | MTR_3g080100 | 60.577 | 104 | 41 | 0 | 46 | 149 | 59 | 162 | 1.68e-35 | 127 |
MS.gene062541.t1 | MTR_5g039000 | 52.985 | 134 | 57 | 2 | 10 | 141 | 43 | 172 | 2.44e-35 | 127 |
MS.gene062541.t1 | MTR_6g011610 | 60.000 | 115 | 41 | 2 | 28 | 141 | 81 | 191 | 5.25e-35 | 126 |
MS.gene062541.t1 | MTR_6g011610 | 60.000 | 115 | 41 | 2 | 28 | 141 | 62 | 172 | 5.71e-35 | 125 |
MS.gene062541.t1 | MTR_7g010020 | 57.292 | 96 | 41 | 0 | 46 | 141 | 80 | 175 | 1.85e-26 | 103 |
MS.gene062541.t1 | MTR_8g026960 | 36.517 | 178 | 90 | 5 | 50 | 221 | 38 | 198 | 3.17e-24 | 97.4 |
MS.gene062541.t1 | MTR_3g092150 | 51.648 | 91 | 44 | 0 | 48 | 138 | 40 | 130 | 5.38e-24 | 97.1 |
MS.gene062541.t1 | MTR_7g103340 | 50.515 | 97 | 41 | 1 | 46 | 142 | 63 | 152 | 5.88e-24 | 96.3 |
MS.gene062541.t1 | MTR_1g061660 | 55.172 | 87 | 39 | 0 | 46 | 132 | 59 | 145 | 2.78e-23 | 94.7 |
MS.gene062541.t1 | MTR_5g019650 | 46.154 | 104 | 49 | 1 | 46 | 142 | 53 | 156 | 4.58e-20 | 85.9 |
MS.gene062541.t1 | MTR_5g019680 | 47.423 | 97 | 51 | 0 | 46 | 142 | 53 | 149 | 8.17e-20 | 84.7 |
MS.gene062541.t1 | MTR_4g126900 | 47.253 | 91 | 41 | 1 | 49 | 139 | 91 | 174 | 1.75e-18 | 81.6 |
MS.gene062541.t1 | MTR_7g093430 | 39.394 | 132 | 63 | 3 | 8 | 139 | 132 | 246 | 1.66e-17 | 80.1 |
MS.gene062541.t1 | MTR_4g100550 | 37.681 | 138 | 72 | 3 | 5 | 139 | 80 | 206 | 2.10e-17 | 79.7 |
MS.gene062541.t1 | MTR_5g014890 | 42.342 | 111 | 50 | 2 | 29 | 139 | 113 | 209 | 6.48e-17 | 78.2 |
MS.gene062541.t1 | MTR_1g054285 | 41.525 | 118 | 57 | 2 | 22 | 139 | 135 | 240 | 1.35e-16 | 77.8 |
MS.gene062541.t1 | MTR_1g017090 | 46.875 | 96 | 44 | 1 | 44 | 139 | 128 | 216 | 1.99e-16 | 77.0 |
MS.gene062541.t1 | MTR_2g061030 | 42.202 | 109 | 61 | 1 | 24 | 132 | 180 | 286 | 4.79e-16 | 76.6 |
MS.gene062541.t1 | MTR_5g013010 | 43.925 | 107 | 49 | 2 | 33 | 139 | 127 | 222 | 1.13e-15 | 75.1 |
MS.gene062541.t1 | MTR_4g084750 | 42.708 | 96 | 48 | 1 | 44 | 139 | 63 | 151 | 1.35e-15 | 73.2 |
MS.gene062541.t1 | MTR_4g097600 | 42.202 | 109 | 53 | 2 | 31 | 139 | 115 | 213 | 1.78e-15 | 74.3 |
MS.gene062541.t1 | MTR_8g006705 | 44.681 | 94 | 45 | 1 | 46 | 139 | 146 | 232 | 1.07e-14 | 72.4 |
MS.gene062541.t1 | MTR_3g103590 | 50.000 | 72 | 36 | 0 | 46 | 117 | 145 | 216 | 2.39e-13 | 68.6 |
MS.gene062541.t1 | MTR_2g038625 | 41.489 | 94 | 48 | 1 | 46 | 139 | 82 | 168 | 2.76e-12 | 64.3 |
MS.gene062541.t1 | MTR_2g038580 | 41.489 | 94 | 48 | 1 | 46 | 139 | 82 | 168 | 2.76e-12 | 64.3 |
MS.gene062541.t1 | MTR_5g013010 | 50.000 | 66 | 29 | 1 | 33 | 98 | 127 | 188 | 8.22e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062541.t1 | AT3G01470 | 61.682 | 107 | 41 | 0 | 44 | 150 | 66 | 172 | 2.49e-40 | 140 |
MS.gene062541.t1 | AT4G40060 | 49.045 | 157 | 71 | 3 | 25 | 175 | 35 | 188 | 7.92e-40 | 139 |
MS.gene062541.t1 | AT2G22430 | 65.979 | 97 | 33 | 0 | 46 | 142 | 62 | 158 | 6.15e-37 | 132 |
MS.gene062541.t1 | AT5G65310 | 50.000 | 138 | 69 | 0 | 5 | 142 | 13 | 150 | 5.96e-36 | 129 |
MS.gene062541.t1 | AT5G65310 | 50.000 | 138 | 69 | 0 | 5 | 142 | 31 | 168 | 8.57e-36 | 129 |
MS.gene062541.t1 | AT1G69780 | 59.459 | 111 | 44 | 1 | 32 | 141 | 70 | 180 | 2.45e-34 | 125 |
MS.gene062541.t1 | AT5G15150 | 64.211 | 95 | 34 | 0 | 46 | 140 | 115 | 209 | 5.36e-33 | 122 |
MS.gene062541.t1 | AT1G27045 | 49.606 | 127 | 62 | 1 | 29 | 155 | 10 | 134 | 1.34e-31 | 115 |
MS.gene062541.t1 | AT1G27045 | 49.606 | 127 | 62 | 1 | 29 | 155 | 10 | 134 | 1.34e-31 | 115 |
MS.gene062541.t1 | AT1G27045 | 49.606 | 127 | 62 | 1 | 29 | 155 | 2 | 126 | 1.55e-31 | 114 |
MS.gene062541.t1 | AT1G27045 | 49.606 | 127 | 62 | 1 | 29 | 155 | 53 | 177 | 3.06e-31 | 115 |
MS.gene062541.t1 | AT3G01220 | 54.545 | 110 | 46 | 1 | 46 | 155 | 87 | 192 | 4.05e-30 | 114 |
MS.gene062541.t1 | AT1G27045 | 52.679 | 112 | 51 | 1 | 29 | 140 | 53 | 162 | 9.25e-29 | 109 |
MS.gene062541.t1 | AT1G26960 | 40.449 | 178 | 86 | 4 | 30 | 188 | 54 | 230 | 5.67e-28 | 107 |
MS.gene062541.t1 | AT2G46680 | 47.273 | 110 | 58 | 0 | 40 | 149 | 26 | 135 | 3.68e-26 | 102 |
MS.gene062541.t1 | AT3G61890 | 49.505 | 101 | 50 | 1 | 49 | 148 | 33 | 133 | 1.87e-25 | 100 |
MS.gene062541.t1 | AT2G46680 | 52.174 | 92 | 44 | 0 | 40 | 131 | 26 | 117 | 8.99e-25 | 99.4 |
MS.gene062541.t1 | AT5G03790 | 55.172 | 87 | 39 | 0 | 46 | 132 | 77 | 163 | 2.45e-24 | 97.4 |
MS.gene062541.t1 | AT5G03790 | 56.098 | 82 | 36 | 0 | 46 | 127 | 77 | 158 | 2.69e-23 | 93.6 |
MS.gene062541.t1 | AT4G36740 | 54.444 | 90 | 41 | 0 | 46 | 135 | 56 | 145 | 1.75e-22 | 92.0 |
MS.gene062541.t1 | AT4G36740 | 54.444 | 90 | 41 | 0 | 46 | 135 | 55 | 144 | 1.79e-22 | 92.0 |
MS.gene062541.t1 | AT5G66700 | 48.077 | 104 | 47 | 1 | 46 | 142 | 71 | 174 | 2.06e-21 | 89.7 |
MS.gene062541.t1 | AT2G36610 | 46.535 | 101 | 46 | 1 | 43 | 135 | 68 | 168 | 2.64e-21 | 88.2 |
MS.gene062541.t1 | AT2G18550 | 48.077 | 104 | 47 | 1 | 46 | 142 | 61 | 164 | 2.69e-20 | 86.7 |
MS.gene062541.t1 | AT4G37790 | 44.144 | 111 | 50 | 2 | 29 | 139 | 114 | 212 | 3.36e-18 | 82.0 |
MS.gene062541.t1 | AT5G53980 | 41.837 | 98 | 57 | 0 | 46 | 143 | 11 | 108 | 4.46e-18 | 79.0 |
MS.gene062541.t1 | AT5G06710 | 37.589 | 141 | 66 | 3 | 9 | 139 | 148 | 276 | 1.00e-17 | 81.3 |
MS.gene062541.t1 | AT2G01430 | 38.596 | 114 | 63 | 1 | 26 | 139 | 119 | 225 | 4.66e-16 | 75.9 |
MS.gene062541.t1 | AT2G22800 | 46.809 | 94 | 43 | 1 | 46 | 139 | 113 | 199 | 1.39e-15 | 74.7 |
MS.gene062541.t1 | AT3G60390 | 40.351 | 114 | 58 | 2 | 26 | 139 | 145 | 248 | 8.21e-15 | 72.8 |
MS.gene062541.t1 | AT2G44910 | 44.681 | 94 | 45 | 1 | 46 | 139 | 163 | 249 | 9.83e-15 | 72.8 |
MS.gene062541.t1 | AT4G16780 | 38.400 | 125 | 56 | 3 | 22 | 139 | 105 | 215 | 1.63e-14 | 71.6 |
MS.gene062541.t1 | AT5G47370 | 44.000 | 100 | 48 | 2 | 46 | 144 | 130 | 222 | 3.64e-14 | 70.9 |
MS.gene062541.t1 | AT4G17460 | 43.564 | 101 | 49 | 2 | 46 | 145 | 135 | 228 | 4.85e-14 | 70.5 |
MS.gene062541.t1 | AT5G06710 | 40.000 | 100 | 45 | 2 | 9 | 98 | 148 | 242 | 5.25e-13 | 67.4 |
MS.gene062541.t1 | AT2G01430 | 43.836 | 73 | 41 | 0 | 26 | 98 | 119 | 191 | 2.26e-12 | 64.7 |
MS.gene062541.t1 | AT1G70920 | 38.983 | 118 | 56 | 3 | 46 | 154 | 69 | 179 | 9.44e-12 | 62.8 |
MS.gene062541.t1 | AT1G70920 | 37.594 | 133 | 64 | 4 | 31 | 154 | 27 | 149 | 1.07e-11 | 62.0 |
Find 38 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAATCTTGCTCTCCTATTT+TGG | 0.157164 | 8.1:+44346404 | None:intergenic |
GCAAGTTGAACTTTCCTTCC+AGG | 0.262711 | 8.1:+44346469 | None:intergenic |
CATCCAACATCTTCAACTTT+AGG | 0.279222 | 8.1:+44345316 | None:intergenic |
TGGCTATATGGTTCCAAAAT+AGG | 0.286402 | 8.1:-44346417 | MS.gene062541:CDS |
ATGGAACATTCAAGATGTTT+TGG | 0.287450 | 8.1:+44345344 | None:intergenic |
TTTCAAGAAAATGAACTTGT+TGG | 0.363914 | 8.1:+44346521 | None:intergenic |
AGCCAAGACAAGTGGCTATA+TGG | 0.377381 | 8.1:-44346429 | MS.gene062541:CDS |
TGTGAAAATTCTGACTGGTT+TGG | 0.408830 | 8.1:+44345388 | None:intergenic |
ATGGTTGATGTTGTGAATGT+TGG | 0.424290 | 8.1:-44346676 | MS.gene062541:CDS |
ATTGGTCCCAAGAGAAGAAC+AGG | 0.425883 | 8.1:-44345524 | MS.gene062541:CDS |
TCTTCAACTTTAGGTATGAA+TGG | 0.429614 | 8.1:+44345325 | None:intergenic |
GGTTTCCATCAGTGTTCTGT+AGG | 0.464695 | 8.1:+44345428 | None:intergenic |
TAATTCTCTCAAGAAAAGAT+TGG | 0.468281 | 8.1:-44345542 | MS.gene062541:CDS |
AAACAGCTAGAAAAGGACTA+TGG | 0.477186 | 8.1:-44346376 | MS.gene062541:CDS |
CATCTTGTGAAAATTCTGAC+TGG | 0.483181 | 8.1:+44345383 | None:intergenic |
ATACCTAAAGTTGAAGATGT+TGG | 0.484817 | 8.1:-44345319 | MS.gene062541:CDS |
AACCATATAGCCACTTGTCT+TGG | 0.489367 | 8.1:+44346427 | None:intergenic |
TGACTATGACAATCTCCATC+AGG | 0.508679 | 8.1:-44346320 | MS.gene062541:CDS |
ATAGAAAACAAGCTTGAACC+TGG | 0.511077 | 8.1:-44346487 | MS.gene062541:CDS |
CAAAACAAAACAGCTAGAAA+AGG | 0.514734 | 8.1:-44346383 | MS.gene062541:CDS |
TGCACCAACCAGGTAAGAAA+AGG | 0.516937 | 8.1:-44346555 | MS.gene062541:CDS |
TTGGTTCCACAACTAACGAT+TGG | 0.542052 | 8.1:+44345407 | None:intergenic |
GCTGTGAAATGATATCATCA+AGG | 0.555248 | 8.1:+44345479 | None:intergenic |
GTTGTGAATGTTGGTGACAT+GGG | 0.567777 | 8.1:-44346667 | MS.gene062541:CDS |
GAATGCCTACAGAACACTGA+TGG | 0.567809 | 8.1:-44345433 | MS.gene062541:CDS |
CTGTGAAATGATATCATCAA+GGG | 0.573406 | 8.1:+44345480 | None:intergenic |
TGTTGTGAATGTTGGTGACA+TGG | 0.586351 | 8.1:-44346668 | MS.gene062541:CDS |
TATTGAGTCAGTACTGCTAG+TGG | 0.587136 | 8.1:-44345219 | None:intergenic |
GAGGTGAGCTTGCACCAACC+AGG | 0.587649 | 8.1:-44346565 | MS.gene062541:CDS |
AAAACAAGCTTGAACCTGGA+AGG | 0.588635 | 8.1:-44346483 | MS.gene062541:CDS |
AAACAACAAATTAAAAGAAG+AGG | 0.591124 | 8.1:-44346296 | MS.gene062541:intron |
TAGCTTGCAGCCAAGACAAG+TGG | 0.597298 | 8.1:-44346437 | MS.gene062541:CDS |
AAGGAAAGTTCAACTTGCAA+AGG | 0.607696 | 8.1:-44346464 | MS.gene062541:CDS |
TGGAAACCAATCGTTAGTTG+TGG | 0.609465 | 8.1:-44345413 | MS.gene062541:CDS |
ACCAACCAGGTAAGAAAAGG+AGG | 0.621874 | 8.1:-44346552 | MS.gene062541:CDS |
TTCACAGCATAGAAGTGATG+CGG | 0.624689 | 8.1:-44345464 | MS.gene062541:CDS |
AAGCTACAGCAACTTTCATG+TGG | 0.654541 | 8.1:+44345283 | None:intergenic |
TGATGATGATGAGAACTATG+AGG | 0.658523 | 8.1:-44346584 | MS.gene062541:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTCTAGATATTTTTTTTT+AGG | + | chr8.1:44345685-44345704 | None:intergenic | 10.0% |
!!! | ATTCTAGATATTTTTTTTTA+GGG | + | chr8.1:44345684-44345703 | None:intergenic | 10.0% |
!! | AAAATAAAATCAAAACATAG+TGG | + | chr8.1:44345892-44345911 | None:intergenic | 15.0% |
!! | TAAAGAGAAATGTTAAAAAT+AGG | + | chr8.1:44346258-44346277 | None:intergenic | 15.0% |
!!! | AAATATCTAGAATTTATAAC+AGG | - | chr8.1:44345691-44345710 | MS.gene062541:intron | 15.0% |
!!! | AATATCTAGAATTTATAACA+GGG | - | chr8.1:44345692-44345711 | MS.gene062541:intron | 15.0% |
!!! | ATATCTTTTCAAATTATATC+TGG | - | chr8.1:44345777-44345796 | MS.gene062541:intron | 15.0% |
!!! | GTATATTTTATTAGTCATTT+GGG | - | chr8.1:44345977-44345996 | MS.gene062541:intron | 15.0% |
!!! | TGTATATTTTATTAGTCATT+TGG | - | chr8.1:44345976-44345995 | MS.gene062541:intron | 15.0% |
!! | AAAAAGTTTGATCTTCAAAT+GGG | + | chr8.1:44346647-44346666 | None:intergenic | 20.0% |
!! | AAACAACAAATTAAAAGAAG+AGG | - | chr8.1:44345602-44345621 | MS.gene062541:intron | 20.0% |
!! | TAAAAAGTTTGATCTTCAAA+TGG | + | chr8.1:44346648-44346667 | None:intergenic | 20.0% |
!! | TTTATAAAAAAATGTCTGCA+AGG | + | chr8.1:44346215-44346234 | None:intergenic | 20.0% |
!!! | AAGATCAAACTTTTTACTTT+TGG | - | chr8.1:44346652-44346671 | MS.gene062541:CDS | 20.0% |
!!! | AGATCAAACTTTTTACTTTT+GGG | - | chr8.1:44346653-44346672 | MS.gene062541:CDS | 20.0% |
! | TAATTCTCTCAAGAAAAGAT+TGG | - | chr8.1:44346356-44346375 | MS.gene062541:CDS | 25.0% |
! | TAGGGATAAATTCTATATGT+TGG | + | chr8.1:44345666-44345685 | None:intergenic | 25.0% |
! | TGATCTCAAAATGAATGATT+TGG | + | chr8.1:44346095-44346114 | None:intergenic | 25.0% |
! | TTATAACTTTATCCCACTAA+TGG | - | chr8.1:44346295-44346314 | MS.gene062541:intron | 25.0% |
! | TTTCAAGAAAATGAACTTGT+TGG | + | chr8.1:44345380-44345399 | None:intergenic | 25.0% |
!! | AACAAGTTCATTTTCTTGAA+AGG | - | chr8.1:44345379-44345398 | MS.gene062541:CDS | 25.0% |
!! | GGGTTTTTAAATGTGTATTT+AGG | - | chr8.1:44345997-44346016 | MS.gene062541:intron | 25.0% |
!!! | TTAATTTGTTGTTTTCCTGA+TGG | + | chr8.1:44345596-44345615 | None:intergenic | 25.0% |
ATACCTAAAGTTGAAGATGT+TGG | - | chr8.1:44346579-44346598 | MS.gene062541:CDS | 30.0% | |
CAAAACAAAACAGCTAGAAA+AGG | - | chr8.1:44345515-44345534 | MS.gene062541:CDS | 30.0% | |
CTGTGAAATGATATCATCAA+GGG | + | chr8.1:44346421-44346440 | None:intergenic | 30.0% | |
TCTTCAACTTTAGGTATGAA+TGG | + | chr8.1:44346576-44346595 | None:intergenic | 30.0% | |
! | AATGAAGAAATTTTGAGCAG+TGG | + | chr8.1:44346185-44346204 | None:intergenic | 30.0% |
! | ATGGAACATTCAAGATGTTT+TGG | + | chr8.1:44346557-44346576 | None:intergenic | 30.0% |
! | TATTTTCCTGTTCTTCTCTT+GGG | + | chr8.1:44346383-44346402 | None:intergenic | 30.0% |
! | TTATTTTCCTGTTCTTCTCT+TGG | + | chr8.1:44346384-44346403 | None:intergenic | 30.0% |
AAACAGCTAGAAAAGGACTA+TGG | - | chr8.1:44345522-44345541 | MS.gene062541:CDS | 35.0% | |
AAGGAAAGTTCAACTTGCAA+AGG | - | chr8.1:44345434-44345453 | MS.gene062541:CDS | 35.0% | |
ATAGAAAACAAGCTTGAACC+TGG | - | chr8.1:44345411-44345430 | MS.gene062541:CDS | 35.0% | |
CATCCAACATCTTCAACTTT+AGG | + | chr8.1:44346585-44346604 | None:intergenic | 35.0% | |
CATCTTGTGAAAATTCTGAC+TGG | + | chr8.1:44346518-44346537 | None:intergenic | 35.0% | |
CTTCTGATTGAAAATGTGTC+CGG | - | chr8.1:44345718-44345737 | MS.gene062541:intron | 35.0% | |
GCTGTGAAATGATATCATCA+AGG | + | chr8.1:44346422-44346441 | None:intergenic | 35.0% | |
TGGCTATATGGTTCCAAAAT+AGG | - | chr8.1:44345481-44345500 | MS.gene062541:CDS | 35.0% | |
! | ATAGGTTTTACATCATGCAC+AGG | + | chr8.1:44346240-44346259 | None:intergenic | 35.0% |
! | ATGGTTGATGTTGTGAATGT+TGG | - | chr8.1:44345222-44345241 | MS.gene062541:CDS | 35.0% |
! | TGAATCTTGCTCTCCTATTT+TGG | + | chr8.1:44345497-44345516 | None:intergenic | 35.0% |
! | TGATGATGATGAGAACTATG+AGG | - | chr8.1:44345314-44345333 | MS.gene062541:CDS | 35.0% |
! | TGTGAAAATTCTGACTGGTT+TGG | + | chr8.1:44346513-44346532 | None:intergenic | 35.0% |
!! | TAATGGTCAGTGGTTGATTT+TGG | - | chr8.1:44346312-44346331 | MS.gene062541:CDS | 35.0% |
!!! | CATTCAAGATGTTTTGGCTT+AGG | + | chr8.1:44346551-44346570 | None:intergenic | 35.0% |
AAAACAAGCTTGAACCTGGA+AGG | - | chr8.1:44345415-44345434 | MS.gene062541:CDS | 40.0% | |
AACCATATAGCCACTTGTCT+TGG | + | chr8.1:44345474-44345493 | None:intergenic | 40.0% | |
AAGCTACAGCAACTTTCATG+TGG | + | chr8.1:44346618-44346637 | None:intergenic | 40.0% | |
AATCAACCACTGACCATTAG+TGG | + | chr8.1:44346311-44346330 | None:intergenic | 40.0% | |
ATCAACCACTGACCATTAGT+GGG | + | chr8.1:44346310-44346329 | None:intergenic | 40.0% | |
TGACTATGACAATCTCCATC+AGG | - | chr8.1:44345578-44345597 | MS.gene062541:intron | 40.0% | |
TGGAAACCAATCGTTAGTTG+TGG | - | chr8.1:44346485-44346504 | MS.gene062541:CDS | 40.0% | |
TTCACAGCATAGAAGTGATG+CGG | - | chr8.1:44346434-44346453 | MS.gene062541:CDS | 40.0% | |
TTGGTTCCACAACTAACGAT+TGG | + | chr8.1:44346494-44346513 | None:intergenic | 40.0% | |
TTTATCCCACTAATGGTCAG+TGG | - | chr8.1:44346302-44346321 | MS.gene062541:CDS | 40.0% | |
! | GGCTATGTCAGTGCTTTTAT+AGG | - | chr8.1:44345833-44345852 | MS.gene062541:intron | 40.0% |
! | GTTGTTGACAGTGTCTTGTT+TGG | - | chr8.1:44345809-44345828 | MS.gene062541:intron | 40.0% |
!! | GTTGTGAATGTTGGTGACAT+GGG | - | chr8.1:44345231-44345250 | MS.gene062541:CDS | 40.0% |
!! | TGTTGTGAATGTTGGTGACA+TGG | - | chr8.1:44345230-44345249 | MS.gene062541:CDS | 40.0% |
ACCAACCAGGTAAGAAAAGG+AGG | - | chr8.1:44345346-44345365 | MS.gene062541:CDS | 45.0% | |
AGCCAAGACAAGTGGCTATA+TGG | - | chr8.1:44345469-44345488 | MS.gene062541:CDS | 45.0% | |
ATTGGTCCCAAGAGAAGAAC+AGG | - | chr8.1:44346374-44346393 | MS.gene062541:CDS | 45.0% | |
GAATGCCTACAGAACACTGA+TGG | - | chr8.1:44346465-44346484 | MS.gene062541:CDS | 45.0% | |
GGTTTCCATCAGTGTTCTGT+AGG | + | chr8.1:44346473-44346492 | None:intergenic | 45.0% | |
TGCACCAACCAGGTAAGAAA+AGG | - | chr8.1:44345343-44345362 | MS.gene062541:CDS | 45.0% | |
TGCATCAGATTTCGAGACAC+CGG | + | chr8.1:44345740-44345759 | None:intergenic | 45.0% | |
! | GCAAGTTGAACTTTCCTTCC+AGG | + | chr8.1:44345432-44345451 | None:intergenic | 45.0% |
!! | GTTGACAGTGTCTTGTTTGG+TGG | - | chr8.1:44345812-44345831 | MS.gene062541:intron | 45.0% |
! | GCCTCCTTTTCTTACCTGGT+TGG | + | chr8.1:44345350-44345369 | None:intergenic | 50.0% |
! | GTGAGCCTCCTTTTCTTACC+TGG | + | chr8.1:44345354-44345373 | None:intergenic | 50.0% |
! | TAGCTTGCAGCCAAGACAAG+TGG | - | chr8.1:44345461-44345480 | MS.gene062541:CDS | 50.0% |
GAGGTGAGCTTGCACCAACC+AGG | - | chr8.1:44345333-44345352 | MS.gene062541:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 44345222 | 44346698 | 44345222 | ID=MS.gene062541 |
chr8.1 | mRNA | 44345222 | 44346698 | 44345222 | ID=MS.gene062541.t1;Parent=MS.gene062541 |
chr8.1 | exon | 44346297 | 44346698 | 44346297 | ID=MS.gene062541.t1.exon1;Parent=MS.gene062541.t1 |
chr8.1 | CDS | 44346297 | 44346698 | 44346297 | ID=cds.MS.gene062541.t1;Parent=MS.gene062541.t1 |
chr8.1 | exon | 44345222 | 44345566 | 44345222 | ID=MS.gene062541.t1.exon2;Parent=MS.gene062541.t1 |
chr8.1 | CDS | 44345222 | 44345566 | 44345222 | ID=cds.MS.gene062541.t1;Parent=MS.gene062541.t1 |
Gene Sequence |
Protein sequence |