Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062710.t1 | XP_013466060.1 | 75.9 | 249 | 60 | 0 | 1 | 249 | 1 | 249 | 7.20E-97 | 363.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062710.t1 | Q9LN63 | 33.3 | 288 | 114 | 4 | 37 | 246 | 45 | 332 | 3.8e-30 | 133.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062710.t1 | A0A072VDJ6 | 75.9 | 249 | 60 | 0 | 1 | 249 | 1 | 249 | 5.2e-97 | 363.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene062710.t1 | TF | BES1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062710.t1 | MTR_1g021990 | 91.566 | 249 | 21 | 0 | 1 | 249 | 1 | 249 | 5.17e-170 | 469 |
| MS.gene062710.t1 | MTR_3g111680 | 46.965 | 313 | 100 | 7 | 1 | 247 | 1 | 313 | 3.35e-62 | 197 |
| MS.gene062710.t1 | MTR_5g019550 | 37.383 | 321 | 106 | 9 | 14 | 246 | 9 | 322 | 2.05e-33 | 123 |
| MS.gene062710.t1 | MTR_2g075410 | 36.792 | 318 | 118 | 11 | 14 | 248 | 6 | 323 | 1.51e-25 | 102 |
| MS.gene062710.t1 | MTR_2g075400 | 37.061 | 313 | 117 | 10 | 14 | 248 | 6 | 316 | 7.17e-25 | 102 |
| MS.gene062710.t1 | MTR_5g026210 | 32.544 | 169 | 102 | 5 | 26 | 194 | 62 | 218 | 1.04e-11 | 64.7 |
| MS.gene062710.t1 | MTR_5g026210 | 54.545 | 55 | 25 | 0 | 26 | 80 | 62 | 116 | 2.11e-11 | 63.9 |
| MS.gene062710.t1 | MTR_5g026210 | 54.545 | 55 | 25 | 0 | 26 | 80 | 62 | 116 | 2.14e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062710.t1 | AT1G75080 | 46.497 | 314 | 90 | 8 | 13 | 248 | 22 | 335 | 6.28e-66 | 208 |
| MS.gene062710.t1 | AT1G75080 | 46.497 | 314 | 90 | 8 | 13 | 248 | 22 | 335 | 6.28e-66 | 208 |
| MS.gene062710.t1 | AT1G19350 | 44.586 | 314 | 96 | 8 | 13 | 248 | 43 | 356 | 4.68e-63 | 201 |
| MS.gene062710.t1 | AT1G19350 | 44.586 | 314 | 96 | 8 | 13 | 248 | 21 | 334 | 7.31e-63 | 200 |
| MS.gene062710.t1 | AT1G19350 | 44.586 | 314 | 96 | 8 | 13 | 248 | 21 | 334 | 7.31e-63 | 200 |
| MS.gene062710.t1 | AT1G19350 | 44.586 | 314 | 96 | 8 | 13 | 248 | 21 | 334 | 7.31e-63 | 200 |
| MS.gene062710.t1 | AT1G19350 | 44.586 | 314 | 96 | 8 | 13 | 248 | 21 | 334 | 7.31e-63 | 200 |
| MS.gene062710.t1 | AT3G50750 | 40.972 | 288 | 117 | 9 | 1 | 248 | 1 | 275 | 3.13e-37 | 132 |
| MS.gene062710.t1 | AT4G36780 | 51.220 | 164 | 44 | 2 | 14 | 141 | 16 | 179 | 1.74e-33 | 122 |
| MS.gene062710.t1 | AT4G18890 | 36.755 | 302 | 101 | 12 | 14 | 248 | 6 | 284 | 2.89e-24 | 98.6 |
| MS.gene062710.t1 | AT1G78700 | 32.836 | 335 | 110 | 7 | 14 | 248 | 6 | 325 | 1.39e-22 | 94.7 |
| MS.gene062710.t1 | AT2G45880 | 53.030 | 66 | 31 | 0 | 13 | 78 | 68 | 133 | 1.36e-14 | 73.2 |
| MS.gene062710.t1 | AT5G45300 | 54.237 | 59 | 27 | 0 | 26 | 84 | 98 | 156 | 7.47e-13 | 68.2 |
| MS.gene062710.t1 | AT5G45300 | 54.237 | 59 | 27 | 0 | 26 | 84 | 98 | 156 | 7.55e-13 | 68.2 |
| MS.gene062710.t1 | AT5G45300 | 54.237 | 59 | 27 | 0 | 26 | 84 | 112 | 170 | 7.81e-13 | 68.2 |
Find 74 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAATGGGACATGGATTT+TGG | 0.093955 | 1.4:+2452458 | None:intergenic |
| ATCAAATATCTTTGATGTTA+TGG | 0.237603 | 1.4:+2453237 | None:intergenic |
| TGATGAGGGATTGGATGATT+TGG | 0.284092 | 1.4:-2452056 | MS.gene062710:CDS |
| AGATGCAGCAAAAGGGTAAT+TGG | 0.291581 | 1.4:+2452267 | None:intergenic |
| CTCCATTTCCAATGAATCTA+TGG | 0.308568 | 1.4:-2452296 | MS.gene062710:CDS |
| CTTGGGTTCGTTGGGCTAGC+AGG | 0.311924 | 1.4:+2452238 | None:intergenic |
| TTGGAACTCACTCTTGGAAC+TGG | 0.334633 | 1.4:-2452037 | MS.gene062710:CDS |
| GAGTAGAGAGGAGGTGTAAC+AGG | 0.350527 | 1.4:+2452358 | None:intergenic |
| GGAAAATGCCATAGATTCAT+TGG | 0.351258 | 1.4:+2452288 | None:intergenic |
| AACTGGGAAAGGAAGGATTT+AGG | 0.362147 | 1.4:-2452020 | None:intergenic |
| TGCCATAGATTCATTGGAAA+TGG | 0.364323 | 1.4:+2452294 | None:intergenic |
| TATGAAGGCTTGGGTTCGTT+GGG | 0.390493 | 1.4:+2452230 | None:intergenic |
| ATTCTAGGTTACCTTGTGAT+AGG | 0.396105 | 1.4:+2453105 | None:intergenic |
| GATGATTTGGAACTCACTCT+TGG | 0.402192 | 1.4:-2452043 | MS.gene062710:CDS |
| GAAGAGGTTGGCACTGCAAA+TGG | 0.411998 | 1.4:+2452175 | None:intergenic |
| GTATGAAGGCTTGGGTTCGT+TGG | 0.423785 | 1.4:+2452229 | None:intergenic |
| TTGATTGGGGTATGAAGGCT+TGG | 0.424100 | 1.4:+2452220 | None:intergenic |
| CAAAAGGATGGAACTTGATT+GGG | 0.426386 | 1.4:+2452206 | None:intergenic |
| TTGGGTTCGTTGGGCTAGCA+GGG | 0.427382 | 1.4:+2452239 | None:intergenic |
| ATAACATCAAAGATATTTGA+TGG | 0.430542 | 1.4:-2453235 | MS.gene062710:CDS |
| GGTGTAACGTTTGTTGATGT+TGG | 0.435589 | 1.4:+2452334 | None:intergenic |
| GGAACTTGATTGGGGTATGA+AGG | 0.440887 | 1.4:+2452215 | None:intergenic |
| CTCTTCATCTTTCAATGCTG+TGG | 0.445261 | 1.4:-2452158 | MS.gene062710:CDS |
| GCAAAAGGATGGAACTTGAT+TGG | 0.449585 | 1.4:+2452205 | None:intergenic |
| TTTGATGGACTTCGAGTTCA+AGG | 0.451556 | 1.4:-2453220 | MS.gene062710:CDS |
| GGGGTAGAAGATGCAGCAAA+AGG | 0.462613 | 1.4:+2452259 | None:intergenic |
| TGGTATGAAGGAATTGAAGT+TGG | 0.464795 | 1.4:+2452427 | None:intergenic |
| GATATCCTCAAAGGAGGAAA+AGG | 0.468045 | 1.4:+2452391 | None:intergenic |
| ATGGAGTCCCATGCTGGAAT+TGG | 0.471276 | 1.4:+2452313 | None:intergenic |
| GAAAAGGCTGAGGAGTGAAT+TGG | 0.472490 | 1.4:+2452407 | None:intergenic |
| CTTCTGCACAAAGAGCTTTG+AGG | 0.474572 | 1.4:+2453158 | None:intergenic |
| AAAGCTCTTTGTGCAGAAGC+TGG | 0.483728 | 1.4:-2453154 | MS.gene062710:CDS |
| AGTTGGAAAAGGTGGACAAA+TGG | 0.485581 | 1.4:+2452444 | None:intergenic |
| GTTGGAAAAGGTGGACAAAT+GGG | 0.487788 | 1.4:+2452445 | None:intergenic |
| TTGGGGTGCAAGTAAAGCCT+TGG | 0.488933 | 1.4:-2452096 | MS.gene062710:CDS |
| TGATTGGGGTATGAAGGCTT+GGG | 0.498122 | 1.4:+2452221 | None:intergenic |
| CTCTTGGAACTGGGAAAGGA+AGG | 0.498360 | 1.4:-2452027 | MS.gene062710:CDS |
| GCAAATGGAGATTGTGCAAA+AGG | 0.501672 | 1.4:+2452190 | None:intergenic |
| TGGGGTGCAAGTAAAGCCTT+GGG | 0.507029 | 1.4:-2452095 | MS.gene062710:CDS |
| CTCACTCTTGGAACTGGGAA+AGG | 0.511149 | 1.4:-2452031 | MS.gene062710:CDS |
| TTGGAAATGGAGTCCCATGC+TGG | 0.515325 | 1.4:+2452307 | None:intergenic |
| GGAATTGAAGTTGGAAAAGG+TGG | 0.517522 | 1.4:+2452436 | None:intergenic |
| GAAGGAATTGAAGTTGGAAA+AGG | 0.518463 | 1.4:+2452433 | None:intergenic |
| ATATGATGAGAGAAAGAAGA+AGG | 0.521014 | 1.4:-2453264 | MS.gene062710:CDS |
| GTGCCTGCATCATTGTTTAG+TGG | 0.523421 | 1.4:+2452496 | None:intergenic |
| CTCTTTGTGCAGAAGCTGGT+TGG | 0.523500 | 1.4:-2453150 | MS.gene062710:CDS |
| ATGGAGATTGTGCAAAAGGA+TGG | 0.524930 | 1.4:+2452194 | None:intergenic |
| CCTGCATCATTGTTTAGTGG+AGG | 0.531453 | 1.4:+2452499 | None:intergenic |
| TTGTGCAGAAGCTGGTTGGT+CGG | 0.532073 | 1.4:-2453146 | MS.gene062710:CDS |
| TTCTCTTTCTCCTTCCACGA+TGG | 0.536162 | 1.4:+2453289 | None:intergenic |
| CTAGGTTACCTTGTGATAGG+TGG | 0.537730 | 1.4:+2453108 | None:intergenic |
| TGGGTTCGTTGGGCTAGCAG+GGG | 0.542358 | 1.4:+2452240 | None:intergenic |
| GTTGATGTTGGTGAGTAGAG+AGG | 0.550315 | 1.4:+2452346 | None:intergenic |
| TCGGAGGAAGCCATCGTGGA+AGG | 0.554225 | 1.4:-2453299 | MS.gene062710:CDS |
| TGGAACTCACTCTTGGAACT+GGG | 0.557403 | 1.4:-2452036 | MS.gene062710:CDS |
| TGAGGAGTGAATTGGTATGA+AGG | 0.559547 | 1.4:+2452415 | None:intergenic |
| CACAGCATTGAAAGATGAAG+AGG | 0.562677 | 1.4:+2452159 | None:intergenic |
| CTCAAAGGAGGAAAAGGCTG+AGG | 0.572126 | 1.4:+2452397 | None:intergenic |
| TTGATGGACTTCGAGTTCAA+GGG | 0.589808 | 1.4:-2453219 | MS.gene062710:CDS |
| GGGTAGAAGATGCAGCAAAA+GGG | 0.593286 | 1.4:+2452260 | None:intergenic |
| CCTCCACTAAACAATGATGC+AGG | 0.594195 | 1.4:-2452499 | MS.gene062710:CDS |
| CGTTACACCAATTCCAGCAT+GGG | 0.600878 | 1.4:-2452320 | MS.gene062710:CDS |
| GGTTGGTCGGTCGAAGAAGA+CGG | 0.613610 | 1.4:-2453133 | MS.gene062710:CDS |
| ACGTTACACCAATTCCAGCA+TGG | 0.614591 | 1.4:-2452321 | MS.gene062710:CDS |
| GCACTGTTTGATATCCTCAA+AGG | 0.634337 | 1.4:+2452382 | None:intergenic |
| AAAGGTGGACAAATGGGACA+TGG | 0.639460 | 1.4:+2452451 | None:intergenic |
| GAATTCGGAGGAAGCCATCG+TGG | 0.640888 | 1.4:-2453303 | MS.gene062710:CDS |
| GTGCAAGTAAAGCCTTGGGT+TGG | 0.645215 | 1.4:-2452091 | MS.gene062710:CDS |
| GCATTGAAAGATGAAGAGGT+TGG | 0.651739 | 1.4:+2452163 | None:intergenic |
| CTGTTTGATATCCTCAAAGG+AGG | 0.652192 | 1.4:+2452385 | None:intergenic |
| AAAAGGATGGAACTTGATTG+GGG | 0.658349 | 1.4:+2452207 | None:intergenic |
| GATGTTGGTGAGTAGAGAGG+AGG | 0.658357 | 1.4:+2452349 | None:intergenic |
| AGACGGAACCACCTATCACA+AGG | 0.701298 | 1.4:-2453116 | MS.gene062710:intron |
| GAAGCATTGTGACAACAACG+AGG | 0.796257 | 1.4:-2453182 | MS.gene062710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTACATATGAAAAATAT+CGG | + | chr1.4:2452402-2452421 | None:intergenic | 10.0% |
| !!! | ACATTACTTTTAATTTACAA+CGG | + | chr1.4:2452669-2452688 | None:intergenic | 15.0% |
| !! | AAACTTCAACAAAAAGAATT+CGG | - | chr1.4:2452037-2452056 | MS.gene062710:CDS | 20.0% |
| !! | ATAACATCAAAGATATTTGA+TGG | - | chr1.4:2452120-2452139 | MS.gene062710:CDS | 20.0% |
| !! | ATCAAATATCTTTGATGTTA+TGG | + | chr1.4:2452121-2452140 | None:intergenic | 20.0% |
| !! | GAACAATAATGTAGTATAAA+TGG | + | chr1.4:2452331-2452350 | None:intergenic | 20.0% |
| !! | TAGTATAAATGGATAGTTAT+AGG | + | chr1.4:2452320-2452339 | None:intergenic | 20.0% |
| !!! | AACATAATTATCTGATCTTT+TGG | - | chr1.4:2452355-2452374 | MS.gene062710:CDS | 20.0% |
| !!! | ATTGTTGTTTTTTGTGAATA+GGG | - | chr1.4:2452826-2452845 | MS.gene062710:intron | 20.0% |
| ! | ATGACAATTTCAAAAATGCT+TGG | - | chr1.4:2453240-2453259 | MS.gene062710:CDS | 25.0% |
| ! | TGACAATTTCAAAAATGCTT+GGG | - | chr1.4:2453241-2453260 | MS.gene062710:CDS | 25.0% |
| !! | ATCTGATGAATAAGATCTTT+TGG | + | chr1.4:2452458-2452477 | None:intergenic | 25.0% |
| !!! | ACATAGTTGTTTTGAACTAA+AGG | + | chr1.4:2452644-2452663 | None:intergenic | 25.0% |
| !!! | ATACCAATTGATTTTCTTCA+TGG | + | chr1.4:2452557-2452576 | None:intergenic | 25.0% |
| !!! | GATTGTTGTTTTTTGTGAAT+AGG | - | chr1.4:2452825-2452844 | MS.gene062710:intron | 25.0% |
| AAAAATTCATGATGAGGGAT+TGG | - | chr1.4:2453290-2453309 | MS.gene062710:CDS | 30.0% | |
| AAAGGTTAAAGAAGTTGAAG+CGG | + | chr1.4:2452626-2452645 | None:intergenic | 30.0% | |
| AGGAGCAAAACAAAAATTCT+AGG | + | chr1.4:2452268-2452287 | None:intergenic | 30.0% | |
| ATATGATGAGAGAAAGAAGA+AGG | - | chr1.4:2452091-2452110 | MS.gene062710:CDS | 30.0% | |
| CAAGTAACAAAGAAACAAAG+AGG | + | chr1.4:2452288-2452307 | None:intergenic | 30.0% | |
| CTTCCATGAAGAAAATCAAT+TGG | - | chr1.4:2452551-2452570 | MS.gene062710:intron | 30.0% | |
| GACAATTTCAAAAATGCTTG+GGG | - | chr1.4:2453242-2453261 | MS.gene062710:CDS | 30.0% | |
| GGTGAAAAAATTCATGATGA+GGG | - | chr1.4:2453285-2453304 | MS.gene062710:CDS | 30.0% | |
| TGGTGAAAAAATTCATGATG+AGG | - | chr1.4:2453284-2453303 | MS.gene062710:CDS | 30.0% | |
| ! | AATAGTGTGCATTTGAAATG+TGG | + | chr1.4:2452701-2452720 | None:intergenic | 30.0% |
| ! | TTTTGTTGAAGTTTCTCTGT+CGG | + | chr1.4:2452031-2452050 | None:intergenic | 30.0% |
| !! | ATTTTGGGAATAAGAGAAAG+AGG | + | chr1.4:2452884-2452903 | None:intergenic | 30.0% |
| AAAAGGATGGAACTTGATTG+GGG | + | chr1.4:2453151-2453170 | None:intergenic | 35.0% | |
| AATTACACAAGCATGCATCA+AGG | + | chr1.4:2452529-2452548 | None:intergenic | 35.0% | |
| ACTAATGTTGCAGATAAGGT+AGG | + | chr1.4:2452752-2452771 | None:intergenic | 35.0% | |
| ATTCTAGGTTACCTTGTGAT+AGG | + | chr1.4:2452253-2452272 | None:intergenic | 35.0% | |
| CAAAAGGATGGAACTTGATT+GGG | + | chr1.4:2453152-2453171 | None:intergenic | 35.0% | |
| CTCCATTTCCAATGAATCTA+TGG | - | chr1.4:2453059-2453078 | MS.gene062710:intron | 35.0% | |
| CTTCAACAAAAAGAATTCGG+AGG | - | chr1.4:2452040-2452059 | MS.gene062710:CDS | 35.0% | |
| GAAGGAATTGAAGTTGGAAA+AGG | + | chr1.4:2452925-2452944 | None:intergenic | 35.0% | |
| GGAAAATGCCATAGATTCAT+TGG | + | chr1.4:2453070-2453089 | None:intergenic | 35.0% | |
| GTACACTAATGTTGCAGATA+AGG | + | chr1.4:2452756-2452775 | None:intergenic | 35.0% | |
| TGCCATAGATTCATTGGAAA+TGG | + | chr1.4:2453064-2453083 | None:intergenic | 35.0% | |
| TGGTATGAAGGAATTGAAGT+TGG | + | chr1.4:2452931-2452950 | None:intergenic | 35.0% | |
| ! | ACAAATGGGACATGGATTTT+GGG | + | chr1.4:2452899-2452918 | None:intergenic | 35.0% |
| !!! | TGAATTTTTTCACCAACCCA+AGG | + | chr1.4:2453279-2453298 | None:intergenic | 35.0% |
| AGATGCAGCAAAAGGGTAAT+TGG | + | chr1.4:2453091-2453110 | None:intergenic | 40.0% | |
| AGTTGGAAAAGGTGGACAAA+TGG | + | chr1.4:2452914-2452933 | None:intergenic | 40.0% | |
| ATGGAGATTGTGCAAAAGGA+TGG | + | chr1.4:2453164-2453183 | None:intergenic | 40.0% | |
| CTCTTCATCTTTCAATGCTG+TGG | - | chr1.4:2453197-2453216 | MS.gene062710:CDS | 40.0% | |
| CTGTTTGATATCCTCAAAGG+AGG | + | chr1.4:2452973-2452992 | None:intergenic | 40.0% | |
| GATATCCTCAAAGGAGGAAA+AGG | + | chr1.4:2452967-2452986 | None:intergenic | 40.0% | |
| GCAAAAGGATGGAACTTGAT+TGG | + | chr1.4:2453153-2453172 | None:intergenic | 40.0% | |
| GCAAATGGAGATTGTGCAAA+AGG | + | chr1.4:2453168-2453187 | None:intergenic | 40.0% | |
| GCACTGTTTGATATCCTCAA+AGG | + | chr1.4:2452976-2452995 | None:intergenic | 40.0% | |
| GCATTGAAAGATGAAGAGGT+TGG | + | chr1.4:2453195-2453214 | None:intergenic | 40.0% | |
| GGAATTGAAGTTGGAAAAGG+TGG | + | chr1.4:2452922-2452941 | None:intergenic | 40.0% | |
| GTTGGAAAAGGTGGACAAAT+GGG | + | chr1.4:2452913-2452932 | None:intergenic | 40.0% | |
| TGAGGAGTGAATTGGTATGA+AGG | + | chr1.4:2452943-2452962 | None:intergenic | 40.0% | |
| TGATGAGGGATTGGATGATT+TGG | - | chr1.4:2453299-2453318 | MS.gene062710:CDS | 40.0% | |
| ! | CACAGCATTGAAAGATGAAG+AGG | + | chr1.4:2453199-2453218 | None:intergenic | 40.0% |
| ! | GACAAATGGGACATGGATTT+TGG | + | chr1.4:2452900-2452919 | None:intergenic | 40.0% |
| ! | GATGATTTGGAACTCACTCT+TGG | - | chr1.4:2453312-2453331 | MS.gene062710:CDS | 40.0% |
| ! | GGTGTAACGTTTGTTGATGT+TGG | + | chr1.4:2453024-2453043 | None:intergenic | 40.0% |
| !! | TTGATGGACTTCGAGTTCAA+GGG | - | chr1.4:2452136-2452155 | MS.gene062710:CDS | 40.0% |
| !! | TTTGATGGACTTCGAGTTCA+AGG | - | chr1.4:2452135-2452154 | MS.gene062710:CDS | 40.0% |
| AAAGCTCTTTGTGCAGAAGC+TGG | - | chr1.4:2452201-2452220 | MS.gene062710:CDS | 45.0% | |
| AAAGGTGGACAAATGGGACA+TGG | + | chr1.4:2452907-2452926 | None:intergenic | 45.0% | |
| ACGTTACACCAATTCCAGCA+TGG | - | chr1.4:2453034-2453053 | MS.gene062710:intron | 45.0% | |
| CCTCCACTAAACAATGATGC+AGG | - | chr1.4:2452856-2452875 | MS.gene062710:intron | 45.0% | |
| CCTGCATCATTGTTTAGTGG+AGG | + | chr1.4:2452859-2452878 | None:intergenic | 45.0% | |
| CGTTACACCAATTCCAGCAT+GGG | - | chr1.4:2453035-2453054 | MS.gene062710:intron | 45.0% | |
| CTAGGTTACCTTGTGATAGG+TGG | + | chr1.4:2452250-2452269 | None:intergenic | 45.0% | |
| CTTCTGCACAAAGAGCTTTG+AGG | + | chr1.4:2452200-2452219 | None:intergenic | 45.0% | |
| GAAAAGGCTGAGGAGTGAAT+TGG | + | chr1.4:2452951-2452970 | None:intergenic | 45.0% | |
| GGAACTTGATTGGGGTATGA+AGG | + | chr1.4:2453143-2453162 | None:intergenic | 45.0% | |
| GGGTAGAAGATGCAGCAAAA+GGG | + | chr1.4:2453098-2453117 | None:intergenic | 45.0% | |
| GTGCCTGCATCATTGTTTAG+TGG | + | chr1.4:2452862-2452881 | None:intergenic | 45.0% | |
| TATGAAGGCTTGGGTTCGTT+GGG | + | chr1.4:2453128-2453147 | None:intergenic | 45.0% | |
| TGATTGGGGTATGAAGGCTT+GGG | + | chr1.4:2453137-2453156 | None:intergenic | 45.0% | |
| TGGAACTCACTCTTGGAACT+GGG | - | chr1.4:2453319-2453338 | MS.gene062710:CDS | 45.0% | |
| TTCTCTTTCTCCTTCCACGA+TGG | + | chr1.4:2452069-2452088 | None:intergenic | 45.0% | |
| TTGATTGGGGTATGAAGGCT+TGG | + | chr1.4:2453138-2453157 | None:intergenic | 45.0% | |
| TTGGAACTCACTCTTGGAAC+TGG | - | chr1.4:2453318-2453337 | MS.gene062710:CDS | 45.0% | |
| ! | GTTGATGTTGGTGAGTAGAG+AGG | + | chr1.4:2453012-2453031 | None:intergenic | 45.0% |
| !! | GAAGCATTGTGACAACAACG+AGG | - | chr1.4:2452173-2452192 | MS.gene062710:CDS | 45.0% |
| AGACGGAACCACCTATCACA+AGG | - | chr1.4:2452239-2452258 | MS.gene062710:CDS | 50.0% | |
| ATGGAGTCCCATGCTGGAAT+TGG | + | chr1.4:2453045-2453064 | None:intergenic | 50.0% | |
| CTCAAAGGAGGAAAAGGCTG+AGG | + | chr1.4:2452961-2452980 | None:intergenic | 50.0% | |
| CTCACTCTTGGAACTGGGAA+AGG | - | chr1.4:2453324-2453343 | MS.gene062710:CDS | 50.0% | |
| CTCTTGGAACTGGGAAAGGA+AGG | - | chr1.4:2453328-2453347 | MS.gene062710:CDS | 50.0% | |
| CTCTTTGTGCAGAAGCTGGT+TGG | - | chr1.4:2452205-2452224 | MS.gene062710:CDS | 50.0% | |
| GAAGAGGTTGGCACTGCAAA+TGG | + | chr1.4:2453183-2453202 | None:intergenic | 50.0% | |
| GGGGTAGAAGATGCAGCAAA+AGG | + | chr1.4:2453099-2453118 | None:intergenic | 50.0% | |
| GTATGAAGGCTTGGGTTCGT+TGG | + | chr1.4:2453129-2453148 | None:intergenic | 50.0% | |
| GTGCAAGTAAAGCCTTGGGT+TGG | - | chr1.4:2453264-2453283 | MS.gene062710:CDS | 50.0% | |
| TGGGGTGCAAGTAAAGCCTT+GGG | - | chr1.4:2453260-2453279 | MS.gene062710:CDS | 50.0% | |
| TTGGAAATGGAGTCCCATGC+TGG | + | chr1.4:2453051-2453070 | None:intergenic | 50.0% | |
| TTGGGGTGCAAGTAAAGCCT+TGG | - | chr1.4:2453259-2453278 | MS.gene062710:CDS | 50.0% | |
| TTGTGCAGAAGCTGGTTGGT+CGG | - | chr1.4:2452209-2452228 | MS.gene062710:CDS | 50.0% | |
| ! | CTCAGCCTTTTCCTCCTTTG+AGG | - | chr1.4:2452959-2452978 | MS.gene062710:intron | 50.0% |
| ! | GAGTAGAGAGGAGGTGTAAC+AGG | + | chr1.4:2453000-2453019 | None:intergenic | 50.0% |
| ! | GATGTTGGTGAGTAGAGAGG+AGG | + | chr1.4:2453009-2453028 | None:intergenic | 50.0% |
| GAATTCGGAGGAAGCCATCG+TGG | - | chr1.4:2452052-2452071 | MS.gene062710:CDS | 55.0% | |
| ! | GGTTGGTCGGTCGAAGAAGA+CGG | - | chr1.4:2452222-2452241 | MS.gene062710:CDS | 55.0% |
| !! | TTGGGTTCGTTGGGCTAGCA+GGG | + | chr1.4:2453119-2453138 | None:intergenic | 55.0% |
| TCGGAGGAAGCCATCGTGGA+AGG | - | chr1.4:2452056-2452075 | MS.gene062710:CDS | 60.0% | |
| !! | CTTGGGTTCGTTGGGCTAGC+AGG | + | chr1.4:2453120-2453139 | None:intergenic | 60.0% |
| !! | TGGGTTCGTTGGGCTAGCAG+GGG | + | chr1.4:2453118-2453137 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 2452021 | 2453356 | 2452021 | ID=MS.gene062710 |
| chr1.4 | mRNA | 2452021 | 2453356 | 2452021 | ID=MS.gene062710.t1;Parent=MS.gene062710 |
| chr1.4 | exon | 2453117 | 2453356 | 2453117 | ID=MS.gene062710.t1.exon1;Parent=MS.gene062710.t1 |
| chr1.4 | CDS | 2453117 | 2453356 | 2453117 | ID=cds.MS.gene062710.t1;Parent=MS.gene062710.t1 |
| chr1.4 | exon | 2452021 | 2452530 | 2452021 | ID=MS.gene062710.t1.exon2;Parent=MS.gene062710.t1 |
| chr1.4 | CDS | 2452021 | 2452530 | 2452021 | ID=cds.MS.gene062710.t1;Parent=MS.gene062710.t1 |
| Gene Sequence |
| Protein sequence |
