Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06272.t1 | AES73151.2 | 97.9 | 193 | 4 | 0 | 5 | 197 | 52 | 244 | 5.30E-98 | 367.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06272.t1 | A0A072V2Z2 | 97.9 | 193 | 4 | 0 | 5 | 197 | 52 | 244 | 3.8e-98 | 367.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06272.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06272.t1 | MTR_3g100180 | 97.927 | 193 | 4 | 0 | 5 | 197 | 52 | 244 | 1.56e-137 | 400 |
| MS.gene06272.t1 | MTR_3g100180 | 97.927 | 193 | 4 | 0 | 5 | 197 | 52 | 244 | 7.21e-136 | 404 |
| MS.gene06272.t1 | MTR_8g024690 | 76.119 | 201 | 44 | 3 | 5 | 201 | 52 | 252 | 7.90e-103 | 297 |
| MS.gene06272.t1 | MTR_8g024690 | 75.758 | 198 | 44 | 3 | 4 | 197 | 51 | 248 | 1.23e-98 | 290 |
| MS.gene06272.t1 | MTR_2g066850 | 50.000 | 142 | 28 | 4 | 32 | 173 | 190 | 288 | 6.26e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06272.t1 | AT1G09710 | 45.361 | 194 | 98 | 4 | 5 | 197 | 27 | 213 | 1.94e-41 | 147 |
| MS.gene06272.t1 | AT1G09710 | 45.361 | 194 | 98 | 4 | 5 | 197 | 27 | 213 | 1.94e-41 | 147 |
| MS.gene06272.t1 | AT1G09710 | 45.361 | 194 | 98 | 4 | 5 | 197 | 56 | 242 | 2.39e-41 | 147 |
| MS.gene06272.t1 | AT1G09710 | 45.361 | 194 | 98 | 4 | 5 | 197 | 56 | 242 | 2.39e-41 | 147 |
| MS.gene06272.t1 | AT1G09710 | 45.361 | 194 | 98 | 4 | 5 | 197 | 56 | 242 | 3.21e-41 | 147 |
| MS.gene06272.t1 | AT1G58220 | 40.206 | 194 | 105 | 5 | 5 | 197 | 54 | 237 | 6.95e-33 | 124 |
| MS.gene06272.t1 | AT1G58220 | 40.206 | 194 | 105 | 5 | 5 | 197 | 54 | 237 | 9.36e-33 | 124 |
Find 58 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTTGCGCTTCTCTTAAT+AGG | 0.279479 | 3.1:+78338428 | None:intergenic |
| AGAAATGGGGTGAAGGGAAT+TGG | 0.300076 | 3.1:-78338478 | MS.gene06272:CDS |
| GTCTGTCTCGGGACAGTAAC+TGG | 0.309971 | 3.1:+78338626 | None:intergenic |
| GCTTCTTGATCGAGATCTTC+GGG | 0.317039 | 3.1:+78341006 | None:intergenic |
| ACGGGAAAATTTACAGTCAT+TGG | 0.321089 | 3.1:+78338719 | None:intergenic |
| AGCTTCTTGATCGAGATCTT+CGG | 0.334407 | 3.1:+78341005 | None:intergenic |
| TTCGCAGCCCTCTATCTTGA+TGG | 0.342268 | 3.1:-78338669 | MS.gene06272:CDS |
| AACCTCAATTGTTGAGCTAC+TGG | 0.391789 | 3.1:+78338742 | None:intergenic |
| ATGATTCCAGCTCGCAATCT+AGG | 0.394178 | 3.1:+78339611 | None:intergenic |
| TACGGGATGCTGTTCAGAAA+TGG | 0.406647 | 3.1:-78338493 | MS.gene06272:CDS |
| AAAAGCATGGTCAGAGGAAG+AGG | 0.416790 | 3.1:-78338525 | MS.gene06272:CDS |
| TTAGAAACCAAGGTAACAAT+TGG | 0.423542 | 3.1:-78338575 | MS.gene06272:CDS |
| ACCTCAATTGTTGAGCTACT+GGG | 0.427532 | 3.1:+78338743 | None:intergenic |
| TCTTTGAACTTCTAGATGAA+TGG | 0.440438 | 3.1:+78338693 | None:intergenic |
| GAGCTGGAATCATTACCTTC+TGG | 0.440450 | 3.1:-78339601 | MS.gene06272:CDS |
| GAAATGGGGTGAAGGGAATT+GGG | 0.444920 | 3.1:-78338477 | MS.gene06272:CDS |
| CTATGGCGTCACTTGGCGTA+TGG | 0.455776 | 3.1:-78341039 | MS.gene06272:CDS |
| CTTCTAGATGAATGGCAAAC+GGG | 0.459236 | 3.1:+78338701 | None:intergenic |
| ACGGGATGCTGTTCAGAAAT+GGG | 0.471647 | 3.1:-78338492 | MS.gene06272:CDS |
| TACCTTGGTTTCTAAAGCAT+CGG | 0.478903 | 3.1:+78338583 | None:intergenic |
| GGTACCACCAATTGTTACCT+TGG | 0.493291 | 3.1:+78338568 | None:intergenic |
| CCATAGCATCTGATATTCTC+TGG | 0.495184 | 3.1:+78341056 | None:intergenic |
| ACAGTTGGCAGTGTCTGTCT+CGG | 0.505188 | 3.1:+78338614 | None:intergenic |
| TGACTGATCCATCAAGATAG+AGG | 0.511332 | 3.1:+78338661 | None:intergenic |
| CAGTTGGCAGTGTCTGTCTC+GGG | 0.514798 | 3.1:+78338615 | None:intergenic |
| AAGCGCAACACAATTGTCTC+AGG | 0.522310 | 3.1:-78338417 | MS.gene06272:CDS |
| CCCCAGTAGCTCAACAATTG+AGG | 0.526713 | 3.1:-78338744 | MS.gene06272:CDS |
| ACTTCTAGATGAATGGCAAA+CGG | 0.529138 | 3.1:+78338700 | None:intergenic |
| GTGGTACCGCAGCTTCCAAA+AGG | 0.530566 | 3.1:-78338553 | MS.gene06272:CDS |
| CCAGAGAATATCAGATGCTA+TGG | 0.535838 | 3.1:-78341056 | MS.gene06272:CDS |
| GAAACCAAGGTAACAATTGG+TGG | 0.536953 | 3.1:-78338572 | MS.gene06272:CDS |
| AATTGGGCAACCATGGCAAA+AGG | 0.537782 | 3.1:-78338461 | MS.gene06272:CDS |
| TATGGCGTCACTTGGCGTAT+GGG | 0.547930 | 3.1:-78341038 | MS.gene06272:CDS |
| TCAGATGCTATGGCGTCACT+TGG | 0.551439 | 3.1:-78341046 | MS.gene06272:CDS |
| GGTAGATTCACTTAGTGTGC+GGG | 0.552870 | 3.1:+78338766 | None:intergenic |
| TGAAGGGAATTGGGCAACCA+TGG | 0.558310 | 3.1:-78338468 | MS.gene06272:CDS |
| CGATCAAGAAGCTCAACCTA+TGG | 0.560608 | 3.1:-78340995 | MS.gene06272:intron |
| CTGTTCAGAAATGGGGTGAA+GGG | 0.567453 | 3.1:-78338484 | MS.gene06272:CDS |
| GCTGTTCAGAAATGGGGTGA+AGG | 0.567552 | 3.1:-78338485 | MS.gene06272:CDS |
| CCTCAATTGTTGAGCTACTG+GGG | 0.577311 | 3.1:+78338744 | None:intergenic |
| GCATCGGTTGATGATACAGT+TGG | 0.580284 | 3.1:+78338599 | None:intergenic |
| GGAAGAGGACAATTTGCTAC+GGG | 0.583393 | 3.1:-78338510 | MS.gene06272:CDS |
| GAAAAGAAAAGCATGGTCAG+AGG | 0.589169 | 3.1:-78338531 | MS.gene06272:CDS |
| AGGAAGAGGACAATTTGCTA+CGG | 0.589284 | 3.1:-78338511 | MS.gene06272:CDS |
| ATCATTACCTTCTGGATGTG+CGG | 0.593358 | 3.1:-78339593 | MS.gene06272:CDS |
| TTGATCGAGATCTTCGGGGA+AGG | 0.594489 | 3.1:+78341011 | None:intergenic |
| TTGGTGAAGAAAACAACCAC+TGG | 0.597524 | 3.1:-78341090 | MS.gene06272:intron |
| GACTGATCCATCAAGATAGA+GGG | 0.602991 | 3.1:+78338662 | None:intergenic |
| AACCGATGCTTTAGAAACCA+AGG | 0.629910 | 3.1:-78338585 | MS.gene06272:CDS |
| TAGTGACCTAGATTGCGAGC+TGG | 0.630707 | 3.1:-78339617 | MS.gene06272:CDS |
| GTAGATTCCGCACATCCAGA+AGG | 0.634450 | 3.1:+78339586 | None:intergenic |
| AGAGACTTCAGCATGTGTGA+AGG | 0.635460 | 3.1:-78339560 | MS.gene06272:intron |
| CGGGATGCTGTTCAGAAATG+GGG | 0.635932 | 3.1:-78338491 | MS.gene06272:CDS |
| GGGTAGATTCACTTAGTGTG+CGG | 0.638583 | 3.1:+78338765 | None:intergenic |
| CCAAAAGGAAAAGAAAAGCA+TGG | 0.641628 | 3.1:-78338538 | MS.gene06272:CDS |
| CTCAATTGTTGAGCTACTGG+GGG | 0.652868 | 3.1:+78338745 | None:intergenic |
| CTTCTTGATCGAGATCTTCG+GGG | 0.680812 | 3.1:+78341007 | None:intergenic |
| TCTGGCAGTAGAAATACCAG+TGG | 0.714592 | 3.1:+78341074 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTCAATAAAAAATAAG+AGG | + | chr3.1:78339864-78339883 | None:intergenic | 10.0% |
| !!! | ACATTTTTAAAATATTGAAA+CGG | + | chr3.1:78340077-78340096 | None:intergenic | 10.0% |
| !!! | AACAAAAAAGAATTTTCTAA+TGG | - | chr3.1:78340601-78340620 | MS.gene06272:intron | 15.0% |
| !!! | ATTAGAAAATTCTTTTTTGT+TGG | + | chr3.1:78340602-78340621 | None:intergenic | 15.0% |
| !!! | TTTTATGCATAATTTACTTT+CGG | - | chr3.1:78339641-78339660 | MS.gene06272:intron | 15.0% |
| !! | AACTGATTAGTAATAGAATA+TGG | + | chr3.1:78339575-78339594 | None:intergenic | 20.0% |
| !! | ATAGATTCTCTGATTAAAAT+AGG | - | chr3.1:78340548-78340567 | MS.gene06272:intron | 20.0% |
| !! | ATGGAATAAATAAGTTCTTA+TGG | - | chr3.1:78340695-78340714 | MS.gene06272:intron | 20.0% |
| !! | ATTCAATTCTTGTAAAAAAG+CGG | - | chr3.1:78340254-78340273 | MS.gene06272:intron | 20.0% |
| !! | CTTATTTATTCCATGTTAAA+TGG | + | chr3.1:78340689-78340708 | None:intergenic | 20.0% |
| !! | TATTTCTCAAATTGTCTTAT+TGG | - | chr3.1:78340179-78340198 | MS.gene06272:intron | 20.0% |
| !!! | ATAAATCTTTTTCTGATTGT+GGG | - | chr3.1:78340221-78340240 | MS.gene06272:intron | 20.0% |
| !!! | GAATTTTAATTGGAATGAAT+TGG | - | chr3.1:78338472-78338491 | MS.gene06272:CDS | 20.0% |
| !!! | TAATGGTTTTTCTGAAAATA+TGG | - | chr3.1:78340618-78340637 | MS.gene06272:intron | 20.0% |
| !!! | TATAAATCTTTTTCTGATTG+TGG | - | chr3.1:78340220-78340239 | MS.gene06272:intron | 20.0% |
| !!! | TTGTATTATTCATGCTTTTT+TGG | - | chr3.1:78339919-78339938 | MS.gene06272:intron | 20.0% |
| ! | AACCTAATTGAAAATGGTAA+CGG | + | chr3.1:78339826-78339845 | None:intergenic | 25.0% |
| ! | ACACATTCAAGTAATTCAAA+AGG | + | chr3.1:78339345-78339364 | None:intergenic | 25.0% |
| ! | ACATTAATTTAAGTCCATAC+TGG | - | chr3.1:78339612-78339631 | MS.gene06272:CDS | 25.0% |
| ! | ACTAGAAAATGATGACATTA+TGG | - | chr3.1:78340402-78340421 | MS.gene06272:intron | 25.0% |
| ! | AGATAACATATAGTTTCCTA+TGG | - | chr3.1:78340468-78340487 | MS.gene06272:intron | 25.0% |
| ! | AGTTTATTGAAACAGCTTAT+AGG | + | chr3.1:78339087-78339106 | None:intergenic | 25.0% |
| ! | ATGTTTGTATCTGTTATTGT+TGG | - | chr3.1:78338700-78338719 | MS.gene06272:CDS | 25.0% |
| ! | ATTAAATGAAACAGTATTCG+TGG | - | chr3.1:78340154-78340173 | MS.gene06272:intron | 25.0% |
| ! | TATTGTTGGATCAATAAGAA+GGG | - | chr3.1:78338714-78338733 | MS.gene06272:CDS | 25.0% |
| ! | TTATTGTTGGATCAATAAGA+AGG | - | chr3.1:78338713-78338732 | MS.gene06272:CDS | 25.0% |
| ! | TTGGATTAACCAACAAAAAT+AGG | + | chr3.1:78340656-78340675 | None:intergenic | 25.0% |
| !! | TCTAATATCCTTGTTTAGTT+CGG | - | chr3.1:78338667-78338686 | MS.gene06272:CDS | 25.0% |
| !!! | GGAGTCTTATATACTTTTTT+AGG | + | chr3.1:78340581-78340600 | None:intergenic | 25.0% |
| !!! | TTTTTTGGATTCATGTTTTC+AGG | - | chr3.1:78339934-78339953 | MS.gene06272:intron | 25.0% |
| AACAACAAATAGCACAATCA+CGG | + | chr3.1:78340737-78340756 | None:intergenic | 30.0% | |
| AACTAAATGCCTGTTTGTAT+TGG | + | chr3.1:78339210-78339229 | None:intergenic | 30.0% | |
| AATCAGCTATTTATCCAAAC+AGG | + | chr3.1:78338852-78338871 | None:intergenic | 30.0% | |
| ATCAGCTATTTATCCAAACA+GGG | + | chr3.1:78338851-78338870 | None:intergenic | 30.0% | |
| ATGTTATTATCTTCTGCATG+CGG | + | chr3.1:78339730-78339749 | None:intergenic | 30.0% | |
| CAGAAATGAGAATGTAGAAA+AGG | - | chr3.1:78340367-78340386 | MS.gene06272:intron | 30.0% | |
| GAAGTTGAATGCTCAAATAA+AGG | + | chr3.1:78339425-78339444 | None:intergenic | 30.0% | |
| GATTAATATCTGACAGTGAT+AGG | - | chr3.1:78340286-78340305 | MS.gene06272:intron | 30.0% | |
| GTAGATAGTTCCATTTAACA+TGG | - | chr3.1:78340676-78340695 | MS.gene06272:intron | 30.0% | |
| GTTAAATGGAACTATCTACT+TGG | + | chr3.1:78340675-78340694 | None:intergenic | 30.0% | |
| GTTTCGTAGATTCTTCAATA+GGG | - | chr3.1:78339885-78339904 | MS.gene06272:intron | 30.0% | |
| TAACATATAGTTTCCTATGG+TGG | - | chr3.1:78340471-78340490 | MS.gene06272:intron | 30.0% | |
| TACCAATCTTTATCCACTTA+AGG | - | chr3.1:78338825-78338844 | MS.gene06272:intron | 30.0% | |
| TACCATTCTTTATCCACTTA+AGG | - | chr3.1:78338939-78338958 | MS.gene06272:intron | 30.0% | |
| TCAAATTAGCCAATACAAAC+AGG | - | chr3.1:78339198-78339217 | MS.gene06272:intron | 30.0% | |
| TCTTTGAACTTCTAGATGAA+TGG | + | chr3.1:78340891-78340910 | None:intergenic | 30.0% | |
| TGTGCAAACCTAATTGAAAA+TGG | + | chr3.1:78339832-78339851 | None:intergenic | 30.0% | |
| TGTTTCGTAGATTCTTCAAT+AGG | - | chr3.1:78339884-78339903 | MS.gene06272:intron | 30.0% | |
| TTAGAAACCAAGGTAACAAT+TGG | - | chr3.1:78341006-78341025 | MS.gene06272:CDS | 30.0% | |
| ! | GCTGTTTCAATAAACTATCT+TGG | - | chr3.1:78339091-78339110 | MS.gene06272:intron | 30.0% |
| !!! | TTGATAGAGCCTATTTTTGT+TGG | - | chr3.1:78340644-78340663 | MS.gene06272:intron | 30.0% |
| AAGAGTAGTAGAGGTTTCAT+TGG | - | chr3.1:78340508-78340527 | MS.gene06272:intron | 35.0% | |
| ACGGGAAAATTTACAGTCAT+TGG | + | chr3.1:78340865-78340884 | None:intergenic | 35.0% | |
| ACTTCTAGATGAATGGCAAA+CGG | + | chr3.1:78340884-78340903 | None:intergenic | 35.0% | |
| AGAGGTTTCATTGGAGAAAT+TGG | - | chr3.1:78340517-78340536 | MS.gene06272:intron | 35.0% | |
| AGGCAGTACATGTAAAACAA+TGG | + | chr3.1:78339785-78339804 | None:intergenic | 35.0% | |
| AGGCATTTAGTTACAAGTGT+TGG | - | chr3.1:78339218-78339237 | MS.gene06272:intron | 35.0% | |
| AGTAGTATGATACACACCAT+AGG | + | chr3.1:78338605-78338624 | None:intergenic | 35.0% | |
| ATAGCTAACCGAACTAAACA+AGG | + | chr3.1:78338678-78338697 | None:intergenic | 35.0% | |
| CCAAAAGGAAAAGAAAAGCA+TGG | - | chr3.1:78341043-78341062 | MS.gene06272:CDS | 35.0% | |
| GCATAAAAATTCAGCCAGTA+TGG | + | chr3.1:78339629-78339648 | None:intergenic | 35.0% | |
| TATAGTTTCCTATGGTGGTT+TGG | - | chr3.1:78340476-78340495 | MS.gene06272:intron | 35.0% | |
| TATGTTATCTGCTCCTTGAT+AGG | + | chr3.1:78340458-78340477 | None:intergenic | 35.0% | |
| TCACATTAGAAGAGTAGTAG+AGG | - | chr3.1:78340499-78340518 | MS.gene06272:intron | 35.0% | |
| ! | AGTTGATGTAGAACCTATCA+AGG | - | chr3.1:78340442-78340461 | MS.gene06272:intron | 35.0% |
| ! | CCATGCTTTTCTTTTCCTTT+TGG | + | chr3.1:78341046-78341065 | None:intergenic | 35.0% |
| ! | TGCCGTTACCATTTTCAATT+AGG | - | chr3.1:78339821-78339840 | MS.gene06272:intron | 35.0% |
| !! | CTGCTGACGAGAATTTTAAT+TGG | - | chr3.1:78338462-78338481 | MS.gene06272:CDS | 35.0% |
| !! | TACCTTGGTTTCTAAAGCAT+CGG | + | chr3.1:78341001-78341020 | None:intergenic | 35.0% |
| !! | TTGAAAATGGTAACGGCAAT+TGG | + | chr3.1:78339819-78339838 | None:intergenic | 35.0% |
| !!! | GTTCAACGAAGTTTTAGCTT+AGG | + | chr3.1:78339284-78339303 | None:intergenic | 35.0% |
| AACCTCAATTGTTGAGCTAC+TGG | + | chr3.1:78340842-78340861 | None:intergenic | 40.0% | |
| ACCTCAATTGTTGAGCTACT+GGG | + | chr3.1:78340841-78340860 | None:intergenic | 40.0% | |
| AGCTTCTTGATCGAGATCTT+CGG | + | chr3.1:78338579-78338598 | None:intergenic | 40.0% | |
| ATCATTACCTTCTGGATGTG+CGG | - | chr3.1:78339988-78340007 | MS.gene06272:intron | 40.0% | |
| CCAGAGAATATCAGATGCTA+TGG | - | chr3.1:78338525-78338544 | MS.gene06272:CDS | 40.0% | |
| CCATAGCATCTGATATTCTC+TGG | + | chr3.1:78338528-78338547 | None:intergenic | 40.0% | |
| CTCTGGGTTGTTTAATCATC+AGG | - | chr3.1:78340780-78340799 | MS.gene06272:intron | 40.0% | |
| CTTCTAGATGAATGGCAAAC+GGG | + | chr3.1:78340883-78340902 | None:intergenic | 40.0% | |
| GAAACCAAGGTAACAATTGG+TGG | - | chr3.1:78341009-78341028 | MS.gene06272:CDS | 40.0% | |
| GACTGATCCATCAAGATAGA+GGG | + | chr3.1:78340922-78340941 | None:intergenic | 40.0% | |
| GGCAATTGGAAGAGTAACAA+AGG | + | chr3.1:78339805-78339824 | None:intergenic | 40.0% | |
| GGCCTTAAGTGGATAAAGAA+TGG | + | chr3.1:78338944-78338963 | None:intergenic | 40.0% | |
| GGCCTTAAGTGGATAAAGAT+TGG | + | chr3.1:78338830-78338849 | None:intergenic | 40.0% | |
| TAATGTGACCAAACCACCAT+AGG | + | chr3.1:78340487-78340506 | None:intergenic | 40.0% | |
| TCACTACAAACCAGCTTGTA+AGG | + | chr3.1:78339535-78339554 | None:intergenic | 40.0% | |
| TGACTGATCCATCAAGATAG+AGG | + | chr3.1:78340923-78340942 | None:intergenic | 40.0% | |
| TGTGTTGCGCTTCTCTTAAT+AGG | + | chr3.1:78341156-78341175 | None:intergenic | 40.0% | |
| TTGGTGAAGAAAACAACCAC+TGG | - | chr3.1:78338491-78338510 | MS.gene06272:CDS | 40.0% | |
| ! | GAAAAGAAAAGCATGGTCAG+AGG | - | chr3.1:78341050-78341069 | MS.gene06272:CDS | 40.0% |
| ! | TTACGACAACTAAAGCGCTA+GGG | + | chr3.1:78339394-78339413 | None:intergenic | 40.0% |
| !! | AACCGATGCTTTAGAAACCA+AGG | - | chr3.1:78340996-78341015 | MS.gene06272:CDS | 40.0% |
| !! | AGGAAGAGGACAATTTGCTA+CGG | - | chr3.1:78341070-78341089 | MS.gene06272:CDS | 40.0% |
| !! | ATCTGACTAGTCTGATTCTC+TGG | - | chr3.1:78340763-78340782 | MS.gene06272:intron | 40.0% |
| !! | TACAAGTGTTGGTGCTTATG+TGG | - | chr3.1:78339229-78339248 | MS.gene06272:intron | 40.0% |
| !! | TCTGACTAGTCTGATTCTCT+GGG | - | chr3.1:78340764-78340783 | MS.gene06272:intron | 40.0% |
| !! | TCTTTTCCTTTTGGAAGCTG+CGG | + | chr3.1:78341037-78341056 | None:intergenic | 40.0% |
| AACACAGTCGCTACGTCATA+CGG | + | chr3.1:78338413-78338432 | None:intergenic | 45.0% | |
| AAGCGCAACACAATTGTCTC+AGG | - | chr3.1:78341164-78341183 | MS.gene06272:intron | 45.0% | |
| AATTGGGCAACCATGGCAAA+AGG | - | chr3.1:78341120-78341139 | MS.gene06272:intron | 45.0% | |
| ACGGGATGCTGTTCAGAAAT+GGG | - | chr3.1:78341089-78341108 | MS.gene06272:intron | 45.0% | |
| AGAAATGGGGTGAAGGGAAT+TGG | - | chr3.1:78341103-78341122 | MS.gene06272:intron | 45.0% | |
| AGAGACTTCAGCATGTGTGA+AGG | - | chr3.1:78340021-78340040 | MS.gene06272:intron | 45.0% | |
| ATGATTCCAGCTCGCAATCT+AGG | + | chr3.1:78339973-78339992 | None:intergenic | 45.0% | |
| ATTCAACTTCGTCAGTGTGC+TGG | - | chr3.1:78339435-78339454 | MS.gene06272:intron | 45.0% | |
| CCTCAATTGTTGAGCTACTG+GGG | + | chr3.1:78340840-78340859 | None:intergenic | 45.0% | |
| CGATCAAGAAGCTCAACCTA+TGG | - | chr3.1:78338586-78338605 | MS.gene06272:CDS | 45.0% | |
| CTAGGGGCAGACAACAAATA+AGG | + | chr3.1:78339377-78339396 | None:intergenic | 45.0% | |
| CTCAATTGTTGAGCTACTGG+GGG | + | chr3.1:78340839-78340858 | None:intergenic | 45.0% | |
| CTGTTCAGAAATGGGGTGAA+GGG | - | chr3.1:78341097-78341116 | MS.gene06272:intron | 45.0% | |
| CTTCTTGATCGAGATCTTCG+GGG | + | chr3.1:78338577-78338596 | None:intergenic | 45.0% | |
| GAAATGGGGTGAAGGGAATT+GGG | - | chr3.1:78341104-78341123 | MS.gene06272:intron | 45.0% | |
| GAGCTGGAATCATTACCTTC+TGG | - | chr3.1:78339980-78339999 | MS.gene06272:intron | 45.0% | |
| GCTTCTTGATCGAGATCTTC+GGG | + | chr3.1:78338578-78338597 | None:intergenic | 45.0% | |
| GGGTAGATTCACTTAGTGTG+CGG | + | chr3.1:78340819-78340838 | None:intergenic | 45.0% | |
| GGTACCACCAATTGTTACCT+TGG | + | chr3.1:78341016-78341035 | None:intergenic | 45.0% | |
| GGTAGATTCACTTAGTGTGC+GGG | + | chr3.1:78340818-78340837 | None:intergenic | 45.0% | |
| TACGGGATGCTGTTCAGAAA+TGG | - | chr3.1:78341088-78341107 | MS.gene06272:intron | 45.0% | |
| TATCCAAACAGGGCCTTAAG+TGG | + | chr3.1:78338841-78338860 | None:intergenic | 45.0% | |
| TATCCACTTAAGGCCCTGTT+TGG | - | chr3.1:78338835-78338854 | MS.gene06272:intron | 45.0% | |
| TCTGGCAGTAGAAATACCAG+TGG | + | chr3.1:78338510-78338529 | None:intergenic | 45.0% | |
| ! | AAAAGCATGGTCAGAGGAAG+AGG | - | chr3.1:78341056-78341075 | MS.gene06272:CDS | 45.0% |
| ! | AAAGCTGTCTCCTTTTGCCA+TGG | + | chr3.1:78341133-78341152 | None:intergenic | 45.0% |
| ! | GTTACGACAACTAAAGCGCT+AGG | + | chr3.1:78339395-78339414 | None:intergenic | 45.0% |
| ! | TACGACAACTAAAGCGCTAG+GGG | + | chr3.1:78339393-78339412 | None:intergenic | 45.0% |
| !! | GCATCGGTTGATGATACAGT+TGG | + | chr3.1:78340985-78341004 | None:intergenic | 45.0% |
| !! | GGAAGAGGACAATTTGCTAC+GGG | - | chr3.1:78341071-78341090 | MS.gene06272:CDS | 45.0% |
| ACAAACCAGCTTGTAAGGCG+AGG | + | chr3.1:78339530-78339549 | None:intergenic | 50.0% | |
| ACAGTTGGCAGTGTCTGTCT+CGG | + | chr3.1:78340970-78340989 | None:intergenic | 50.0% | |
| CCCCAGTAGCTCAACAATTG+AGG | - | chr3.1:78340837-78340856 | MS.gene06272:intron | 50.0% | |
| CGGGATGCTGTTCAGAAATG+GGG | - | chr3.1:78341090-78341109 | MS.gene06272:intron | 50.0% | |
| GCCATATCTCCAAGCGATGA+GGG | + | chr3.1:78339481-78339500 | None:intergenic | 50.0% | |
| GCTGTTCAGAAATGGGGTGA+AGG | - | chr3.1:78341096-78341115 | MS.gene06272:intron | 50.0% | |
| GTAGATTCCGCACATCCAGA+AGG | + | chr3.1:78339998-78340017 | None:intergenic | 50.0% | |
| GTGTTTAGTCCCTCATCGCT+TGG | - | chr3.1:78339469-78339488 | MS.gene06272:intron | 50.0% | |
| TAGTGACCTAGATTGCGAGC+TGG | - | chr3.1:78339964-78339983 | MS.gene06272:intron | 50.0% | |
| TATGGCGTCACTTGGCGTAT+GGG | - | chr3.1:78338543-78338562 | MS.gene06272:CDS | 50.0% | |
| TCAGATGCTATGGCGTCACT+TGG | - | chr3.1:78338535-78338554 | MS.gene06272:CDS | 50.0% | |
| TCCCTCATCGCTTGGAGATA+TGG | - | chr3.1:78339477-78339496 | MS.gene06272:intron | 50.0% | |
| TGAAGGGAATTGGGCAACCA+TGG | - | chr3.1:78341113-78341132 | MS.gene06272:intron | 50.0% | |
| TGACGTAGCGACTGTGTTGA+CGG | - | chr3.1:78338415-78338434 | MS.gene06272:CDS | 50.0% | |
| TGGCGTAAGTAGTACCTGCA+AGG | - | chr3.1:78339497-78339516 | MS.gene06272:intron | 50.0% | |
| TTCGCAGCCCTCTATCTTGA+TGG | - | chr3.1:78340912-78340931 | MS.gene06272:intron | 50.0% | |
| TTGATCGAGATCTTCGGGGA+AGG | + | chr3.1:78338573-78338592 | None:intergenic | 50.0% | |
| ! | GACTGTGTTGACGGTGTTTC+AGG | - | chr3.1:78338424-78338443 | MS.gene06272:CDS | 50.0% |
| AGCTTGTAAGGCGAGGACAG+CGG | + | chr3.1:78339523-78339542 | None:intergenic | 55.0% | |
| CAGTTGGCAGTGTCTGTCTC+GGG | + | chr3.1:78340969-78340988 | None:intergenic | 55.0% | |
| CGCCATATCTCCAAGCGATG+AGG | + | chr3.1:78339482-78339501 | None:intergenic | 55.0% | |
| CTATGGCGTCACTTGGCGTA+TGG | - | chr3.1:78338542-78338561 | MS.gene06272:CDS | 55.0% | |
| GTCTGTCTCGGGACAGTAAC+TGG | + | chr3.1:78340958-78340977 | None:intergenic | 55.0% | |
| GTGGTACCGCAGCTTCCAAA+AGG | - | chr3.1:78341028-78341047 | MS.gene06272:CDS | 55.0% | |
| !! | CGTCAGTGTGCTGGTTGTGA+AGG | - | chr3.1:78339444-78339463 | MS.gene06272:intron | 55.0% |
| GCTGTCCTCGCCTTACAAGC+TGG | - | chr3.1:78339522-78339541 | MS.gene06272:intron | 60.0% | |
| GGCGAGGACAGCGGCCTTGC+AGG | + | chr3.1:78339514-78339533 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 78338400 | 78341203 | 78338400 | ID=MS.gene06272 |
| chr3.1 | mRNA | 78338400 | 78341203 | 78338400 | ID=MS.gene06272.t1;Parent=MS.gene06272 |
| chr3.1 | exon | 78341192 | 78341203 | 78341192 | ID=MS.gene06272.t1.exon1;Parent=MS.gene06272.t1 |
| chr3.1 | CDS | 78341192 | 78341203 | 78341192 | ID=cds.MS.gene06272.t1;Parent=MS.gene06272.t1 |
| chr3.1 | exon | 78340996 | 78341103 | 78340996 | ID=MS.gene06272.t1.exon2;Parent=MS.gene06272.t1 |
| chr3.1 | CDS | 78340996 | 78341103 | 78340996 | ID=cds.MS.gene06272.t1;Parent=MS.gene06272.t1 |
| chr3.1 | exon | 78339561 | 78339647 | 78339561 | ID=MS.gene06272.t1.exon3;Parent=MS.gene06272.t1 |
| chr3.1 | CDS | 78339561 | 78339647 | 78339561 | ID=cds.MS.gene06272.t1;Parent=MS.gene06272.t1 |
| chr3.1 | exon | 78338400 | 78338801 | 78338400 | ID=MS.gene06272.t1.exon4;Parent=MS.gene06272.t1 |
| chr3.1 | CDS | 78338400 | 78338801 | 78338400 | ID=cds.MS.gene06272.t1;Parent=MS.gene06272.t1 |
| Gene Sequence |
| Protein sequence |
