AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062856

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062856.t1 MTR_1g044120 77.707 471 42 7 1 408 481 951 0.0 714
MS.gene062856.t1 MTR_1g044120 88.136 59 7 0 420 478 1069 1127 5.26e-26 112
MS.gene062856.t1 MTR_2g084630 38.614 505 189 8 1 412 349 825 8.87e-107 341
MS.gene062856.t1 MTR_2g084630 62.712 59 22 0 420 478 938 996 1.72e-19 92.4
MS.gene062856.t1 MTR_2g084630 38.614 505 189 8 1 412 343 819 9.34e-107 341
MS.gene062856.t1 MTR_2g084630 62.712 59 22 0 420 478 941 999 1.77e-19 92.4
MS.gene062856.t1 MTR_7g089190 29.975 397 182 12 52 399 249 598 3.23e-43 163
MS.gene062856.t1 MTR_7g089190 49.153 59 30 0 420 478 734 792 1.37e-13 73.9
MS.gene062856.t1 MTR_2g012830 27.636 275 137 6 144 398 784 1016 8.33e-25 108
MS.gene062856.t1 MTR_2g012830 52.542 59 28 0 420 478 1214 1272 1.10e-11 68.2
MS.gene062856.t1 MTR_1g115215 28.623 276 133 8 144 398 528 760 1.64e-24 108
MS.gene062856.t1 MTR_1g115215 50.847 59 29 0 420 478 951 1009 3.36e-11 66.2
MS.gene062856.t1 MTR_5g090090 24.356 505 285 14 28 478 613 1074 6.47e-21 97.1
MS.gene062856.t1 MTR_5g090090 24.356 505 285 14 28 478 613 1074 7.93e-21 96.7
MS.gene062856.t1 MTR_3g053910 24.686 478 264 13 55 478 593 1028 9.88e-21 96.7
MS.gene062856.t1 MTR_3g053910 24.686 478 264 13 55 478 622 1057 1.16e-20 96.3
MS.gene062856.t1 MTR_2g020000 27.431 288 144 11 53 298 211 475 4.30e-19 91.3
MS.gene062856.t1 MTR_4g118845 27.431 288 144 11 53 298 21 285 1.89e-18 89.4
MS.gene062856.t1 MTR_4g118845 27.431 288 144 11 53 298 208 472 2.40e-18 89.0
MS.gene062856.t1 MTR_1g105050 26.263 297 145 9 53 297 396 670 1.11e-16 83.6
MS.gene062856.t1 MTR_5g005840 26.599 297 144 9 53 297 383 657 5.62e-15 78.2
MS.gene062856.t1 MTR_5g020000 25.281 356 164 14 11 299 169 489 1.84e-14 76.6
MS.gene062856.t1 MTR_1g053955 25.974 308 147 12 53 306 541 821 3.48e-14 76.3
MS.gene062856.t1 MTR_4g049500 52.542 59 28 0 420 478 848 906 1.58e-13 73.6
MS.gene062856.t1 MTR_4g049500 32.353 136 82 4 46 175 253 384 3.99e-13 72.4
MS.gene062856.t1 MTR_7g090960 25.234 321 156 14 36 294 581 879 5.73e-13 72.0
MS.gene062856.t1 MTR_7g090960 25.234 321 156 14 36 294 500 798 5.91e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062856.t1 AT5G43530 45.385 520 165 9 1 429 627 1118 4.93e-135 421
MS.gene062856.t1 AT5G43530 77.966 59 13 0 420 478 1193 1251 4.05e-22 100
MS.gene062856.t1 AT5G22750 39.010 505 190 9 1 415 359 835 5.67e-106 339
MS.gene062856.t1 AT5G22750 66.102 59 20 0 420 478 945 1003 3.40e-20 94.7
MS.gene062856.t1 AT1G11100 33.333 324 126 9 53 292 422 739 3.52e-36 143
MS.gene062856.t1 AT1G11100 52.542 59 28 0 420 478 994 1052 8.81e-12 68.2
MS.gene062856.t1 AT1G11100 33.333 324 126 9 53 292 565 882 3.99e-36 143
MS.gene062856.t1 AT1G11100 52.542 59 28 0 420 478 1137 1195 8.97e-12 68.2
MS.gene062856.t1 AT5G05130 26.509 464 206 15 17 399 251 660 1.64e-35 141
MS.gene062856.t1 AT5G05130 47.692 65 34 0 414 478 787 851 1.32e-13 73.9
MS.gene062856.t1 AT3G16600 27.378 431 163 12 42 398 65 419 2.72e-34 136
MS.gene062856.t1 AT1G50410 29.000 300 129 8 132 398 455 703 1.62e-24 108
MS.gene062856.t1 AT1G50410 47.692 65 34 0 414 478 886 950 1.79e-11 67.4
MS.gene062856.t1 AT1G50410 29.000 300 129 8 132 398 455 703 1.62e-24 108
MS.gene062856.t1 AT1G50410 47.692 65 34 0 414 478 886 950 1.79e-11 67.4
MS.gene062856.t1 AT1G50410 29.000 300 129 8 132 398 455 703 1.62e-24 108
MS.gene062856.t1 AT1G50410 47.692 65 34 0 414 478 886 950 1.79e-11 67.4
MS.gene062856.t1 AT1G50410 29.000 300 129 8 132 398 455 703 1.84e-24 107
MS.gene062856.t1 AT1G61140 31.905 210 122 3 144 333 630 838 2.98e-23 104
MS.gene062856.t1 AT1G61140 54.237 59 27 0 420 478 1031 1089 1.98e-12 70.5
MS.gene062856.t1 AT1G61140 31.905 210 122 3 144 333 788 996 3.35e-23 104
MS.gene062856.t1 AT1G61140 54.237 59 27 0 420 478 1189 1247 1.88e-12 70.5
MS.gene062856.t1 AT1G61140 34.254 181 97 4 157 316 807 986 2.13e-22 101
MS.gene062856.t1 AT2G13370 24.200 500 237 16 55 478 647 1080 4.21e-22 100
MS.gene062856.t1 AT2G13370 24.200 500 237 16 55 478 647 1080 4.21e-22 100
MS.gene062856.t1 AT2G13370 24.200 500 237 16 55 478 647 1080 4.21e-22 100
MS.gene062856.t1 AT5G19310 24.900 502 259 16 29 469 119 563 7.55e-21 96.7
MS.gene062856.t1 AT5G19310 24.738 477 244 15 53 469 406 827 7.58e-21 96.7
MS.gene062856.t1 AT1G11100 36.306 157 78 4 157 292 770 925 1.24e-20 96.3
MS.gene062856.t1 AT1G11100 38.346 133 47 4 53 155 564 691 6.29e-12 68.9
MS.gene062856.t1 AT1G11100 49.231 65 33 0 414 478 1174 1238 1.03e-11 68.2
MS.gene062856.t1 AT1G11100 36.306 157 78 4 157 292 771 926 1.27e-20 96.3
MS.gene062856.t1 AT1G11100 38.346 133 47 4 53 155 565 692 6.45e-12 68.9
MS.gene062856.t1 AT1G11100 49.231 65 33 0 414 478 1175 1239 1.05e-11 68.2
MS.gene062856.t1 AT1G11100 36.306 157 78 4 157 292 628 783 1.61e-20 95.9
MS.gene062856.t1 AT1G11100 38.346 133 47 4 53 155 422 549 5.03e-12 68.9
MS.gene062856.t1 AT1G11100 52.542 59 28 0 420 478 1038 1096 1.07e-11 68.2
MS.gene062856.t1 AT3G20010 28.261 276 136 6 144 399 277 510 1.53e-19 92.4
MS.gene062856.t1 AT3G20010 50.847 59 29 0 420 478 692 750 2.10e-11 67.0
MS.gene062856.t1 AT3G20010 28.261 276 136 6 144 399 543 776 1.64e-19 92.4
MS.gene062856.t1 AT3G20010 28.261 276 136 6 144 399 543 776 1.64e-19 92.4
MS.gene062856.t1 AT3G20010 28.261 276 136 6 144 399 543 776 1.64e-19 92.4
MS.gene062856.t1 AT3G20010 28.261 276 136 6 144 399 543 776 1.65e-19 92.8
MS.gene062856.t1 AT3G20010 50.847 59 29 0 420 478 958 1016 1.99e-11 67.0
MS.gene062856.t1 AT3G20010 28.261 276 136 6 144 399 543 776 1.65e-19 92.8
MS.gene062856.t1 AT3G20010 50.847 59 29 0 420 478 958 1016 1.99e-11 67.0
MS.gene062856.t1 AT3G20010 28.261 276 136 6 144 399 543 776 1.65e-19 92.8
MS.gene062856.t1 AT3G20010 50.847 59 29 0 420 478 958 1016 1.99e-11 67.0
MS.gene062856.t1 AT3G20010 28.261 276 136 6 144 399 252 485 1.75e-19 92.4
MS.gene062856.t1 AT3G20010 50.847 59 29 0 420 478 667 725 2.01e-11 67.0
MS.gene062856.t1 AT5G18620 26.132 287 147 10 54 298 215 478 4.81e-19 91.3
MS.gene062856.t1 AT5G18620 26.132 287 147 10 54 298 215 478 4.89e-19 91.3
MS.gene062856.t1 AT3G06400 26.042 288 148 10 53 298 209 473 4.90e-19 91.3
MS.gene062856.t1 AT3G06400 26.042 288 148 10 53 298 209 473 5.31e-19 90.9
MS.gene062856.t1 AT3G06400 26.042 288 148 10 53 298 209 473 5.31e-19 90.9
MS.gene062856.t1 AT3G06010 27.000 300 139 10 53 297 423 697 2.34e-16 82.8
MS.gene062856.t1 AT5G66750 23.017 517 267 16 29 471 199 658 6.81e-16 81.3
MS.gene062856.t1 AT1G05120 55.932 59 26 0 420 478 746 804 9.21e-14 74.3
MS.gene062856.t1 AT1G05120 32.558 129 70 3 37 159 139 256 3.30e-13 72.8
MS.gene062856.t1 AT1G05120 55.932 59 26 0 420 478 789 847 9.95e-14 74.3
MS.gene062856.t1 AT1G05120 32.558 129 70 3 37 159 182 299 3.13e-13 72.8
MS.gene062856.t1 AT2G25170 23.385 325 160 11 55 316 295 593 1.77e-13 73.9
MS.gene062856.t1 AT2G25170 23.385 325 160 11 55 316 295 593 1.77e-13 73.9
MS.gene062856.t1 AT2G25170 23.385 325 160 11 55 316 312 610 1.95e-13 73.6
MS.gene062856.t1 AT2G25170 23.385 325 160 11 55 316 321 619 2.01e-13 73.6
MS.gene062856.t1 AT1G02670 54.098 61 28 0 420 480 580 640 3.56e-13 72.4
MS.gene062856.t1 AT1G02670 54.098 61 28 0 420 480 591 651 3.60e-13 72.4
MS.gene062856.t1 AT1G02670 54.098 61 28 0 420 480 603 663 5.03e-13 72.0
MS.gene062856.t1 AT1G02670 54.098 61 28 0 420 480 576 636 5.69e-13 71.6
MS.gene062856.t1 AT3G57300 24.922 321 157 13 36 294 589 887 3.89e-12 69.3
MS.gene062856.t1 AT3G57300 25.658 304 142 13 53 294 606 887 4.54e-12 69.3
MS.gene062856.t1 AT3G57300 25.658 304 142 13 53 294 606 887 4.54e-12 69.3

Find 100 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCCCTTGACCAATTTC+AGG 0.193643 1.1:-27629522 None:intergenic
TGGATACATCGATGAGGTTT+TGG 0.202894 1.1:+27630397 MS.gene062856:CDS
TTCTTTATCCTTTGTTTCCT+TGG 0.222309 1.1:-27629569 None:intergenic
ATATCCATATTTGTTCATTA+TGG 0.248590 1.1:+27628695 MS.gene062856:CDS
CACTGCCGCTGGTGTCTAAC+TGG 0.304962 1.1:+27629010 MS.gene062856:CDS
CCCACCATAATGAACAAATA+TGG 0.317995 1.1:-27628699 None:intergenic
AACCCATCGTCTAATTTAGA+TGG 0.354792 1.1:+27628488 MS.gene062856:CDS
TAACAGCAAATCAGGATTAC+TGG 0.364949 1.1:-27628729 None:intergenic
CTGCTCAAGTCCTGCATACT+TGG 0.366189 1.1:-27630230 None:intergenic
TTGGCAGATGCAATGGGACT+TGG 0.378144 1.1:+27628351 MS.gene062856:CDS
AGAAAACAGAAGATGATATC+TGG 0.387084 1.1:+27631747 MS.gene062856:CDS
GGATCAAAGTGCCCTGAAAT+TGG 0.390141 1.1:+27629510 MS.gene062856:CDS
CACTTTAATTGTTTGTCCTA+TGG 0.391139 1.1:+27628514 MS.gene062856:CDS
TAATGAGGATTCATCGTATT+GGG 0.397048 1.1:+27631158 MS.gene062856:CDS
AGAATGCCTATTCAATTGTT+GGG 0.399973 1.1:+27630514 MS.gene062856:CDS
TCTAACTGGAACACCACTTC+AGG 0.402583 1.1:+27629024 MS.gene062856:CDS
GATGTTGTCTTGACAACTTA+TGG 0.404787 1.1:+27628758 MS.gene062856:CDS
CTTTCTTGCGTGTGCAACCT+TGG 0.413656 1.1:+27629326 MS.gene062856:CDS
TGTTTGTCCTATGGCGTTGT+TGG 0.416565 1.1:+27628523 MS.gene062856:CDS
CAATTGTTGGGGTACCTCAA+TGG 0.418156 1.1:+27630526 MS.gene062856:CDS
TCATACTCTAACAGCAAATC+AGG 0.419834 1.1:-27628737 None:intergenic
GAGAATGCCTATTCAATTGT+TGG 0.424697 1.1:+27630513 MS.gene062856:CDS
TTGAATATCAGTTGGTGGGC+AGG 0.426352 1.1:-27629775 None:intergenic
AATTGTTGGGGTACCTCAAT+GGG 0.437831 1.1:+27630527 MS.gene062856:CDS
AGGTACCCCAACAATTGAAT+AGG 0.439398 1.1:-27630520 None:intergenic
CATCGATGTATCCACGAGAT+TGG 0.440850 1.1:-27630388 None:intergenic
TCTTCTGACTTCAACCTGCC+TGG 0.441017 1.1:-27628411 None:intergenic
AGAGAAATCTACATCCTTGC+TGG 0.445334 1.1:+27628049 MS.gene062856:CDS
TCCATATTTGTTCATTATGG+TGG 0.450185 1.1:+27628698 MS.gene062856:CDS
CTTGCCATCTGTGTTGCTTG+TGG 0.453973 1.1:-27628232 None:intergenic
AATTCCCTTGACCAATTTCA+GGG 0.461337 1.1:-27629521 None:intergenic
CCATATTTGTTCATTATGGT+GGG 0.461498 1.1:+27628699 MS.gene062856:CDS
CTCTGTCGTCACACTGCCGC+TGG 0.466043 1.1:+27628999 MS.gene062856:CDS
ACAGCACATATCAGATGATT+CGG 0.473769 1.1:-27630282 None:intergenic
GTTTGTCCTATGGCGTTGTT+GGG 0.476566 1.1:+27628524 MS.gene062856:CDS
GTGTGCAACCTTGGTGCAGC+TGG 0.480527 1.1:+27629335 MS.gene062856:CDS
ATTGCTTGCTCCTCAACTGC+AGG 0.481909 1.1:-27631136 None:intergenic
TCACTAAAAGCTGGTGGTGT+TGG 0.484085 1.1:+27630976 MS.gene062856:CDS
GCACTGATTCTTAGTAATCC+AGG 0.491332 1.1:+27628393 MS.gene062856:CDS
ATAATGAGGATTCATCGTAT+TGG 0.493417 1.1:+27631157 MS.gene062856:CDS
GCTTTCTATTCAGAATAGCT+TGG 0.498725 1.1:+27629282 MS.gene062856:intron
CAGCCTCAAATGTTTCCTAA+TGG 0.501326 1.1:+27631013 MS.gene062856:CDS
CATATTTGTTCATTATGGTG+GGG 0.508018 1.1:+27628700 MS.gene062856:CDS
ATCAATTGAATATCAGTTGG+TGG 0.508970 1.1:-27629780 None:intergenic
ATCGTATTGGGCAAAAGCGA+AGG 0.513110 1.1:+27631170 MS.gene062856:CDS
TGAGCAGTCAGAATCTGAAC+GGG 0.521921 1.1:+27629809 MS.gene062856:CDS
CTAACCCATTGCATATATGT+AGG 0.525483 1.1:-27628076 None:intergenic
AGTGATACTGCCAAGTATGC+AGG 0.527863 1.1:+27630220 MS.gene062856:CDS
GTCAGCCTACATATATGCAA+TGG 0.530951 1.1:+27628071 MS.gene062856:CDS
AAGGAAACAAAGGATAAAGA+AGG 0.531212 1.1:+27629571 MS.gene062856:CDS
AAACAAAGGATAAAGAAGGA+AGG 0.532039 1.1:+27629575 MS.gene062856:CDS
GACAACTTACTTTAGCTCTC+AGG 0.533333 1.1:-27629851 None:intergenic
AACAGGGAACAGTGGAAGAT+CGG 0.539243 1.1:+27631705 MS.gene062856:intron
TCAATCAATTGAATATCAGT+TGG 0.541901 1.1:-27629783 None:intergenic
TCAGCCTACATATATGCAAT+GGG 0.542402 1.1:+27628072 MS.gene062856:CDS
TGGCAGATGCAATGGGACTT+GGG 0.546445 1.1:+27628352 MS.gene062856:CDS
ATATTTGTTCATTATGGTGG+GGG 0.549272 1.1:+27628701 MS.gene062856:CDS
AGTCAAGGATATTTGCATAG+TGG 0.556170 1.1:-27630063 None:intergenic
TTGTTGATGTCACTAAAAGC+TGG 0.557014 1.1:+27630967 MS.gene062856:CDS
TCCTGATAATTAACCTGAAG+TGG 0.565478 1.1:-27629037 None:intergenic
TGTAAGAAGATTCATTGTGA+AGG 0.568078 1.1:+27631198 MS.gene062856:CDS
CTGCAAAACTGATGTGCACA+TGG 0.577259 1.1:-27630491 None:intergenic
CACCATCTAAATTAGACGAT+GGG 0.577463 1.1:-27628490 None:intergenic
AAGTGCCCTGAAATTGGTCA+AGG 0.578761 1.1:+27629516 MS.gene062856:CDS
ACAAATATGGATATGCTGCC+TGG 0.586898 1.1:-27628686 None:intergenic
ATACCATTAGGAAACATTTG+AGG 0.592803 1.1:-27631016 None:intergenic
TCGTATTGGGCAAAAGCGAA+GGG 0.594361 1.1:+27631171 MS.gene062856:CDS
TAATGAAAATGTAGGATCCA+TGG 0.594818 1.1:+27631107 MS.gene062856:intron
TCAATTGAATATCAGTTGGT+GGG 0.595952 1.1:-27629779 None:intergenic
TTGGTGGGCAGGACAAGTAT+AGG 0.597654 1.1:-27629764 None:intergenic
TGATTCTTAGTAATCCAGGC+AGG 0.598687 1.1:+27628397 MS.gene062856:CDS
TTGAAAACGCATTCAAAACC+AGG 0.598831 1.1:+27628668 MS.gene062856:CDS
GAATGCCTATTCAATTGTTG+GGG 0.601301 1.1:+27630515 MS.gene062856:CDS
TTGAGGAGCAAGCAATAATG+AGG 0.603347 1.1:+27631143 MS.gene062856:CDS
CACTGGCCCAACAACGCCAT+AGG 0.606616 1.1:-27628530 None:intergenic
TGTAGAATGTGCTATATGCA+TGG 0.608661 1.1:+27630442 MS.gene062856:CDS
GTGAGCAGTCAGAATCTGAA+CGG 0.611649 1.1:+27629808 MS.gene062856:CDS
ATGGTGGAATCCTGCAGTTG+AGG 0.617051 1.1:+27631126 MS.gene062856:CDS
TGGGCACTTACCACCCATTG+AGG 0.618859 1.1:-27630540 None:intergenic
AAGGAGAACCAAGGAAACAA+AGG 0.619004 1.1:+27629561 MS.gene062856:CDS
ATTTCCACAAGCAACACAGA+TGG 0.621081 1.1:+27628228 MS.gene062856:CDS
TCAACTGCATTAGTAAGTCA+AGG 0.621907 1.1:-27630078 None:intergenic
TCAAACTCTATCCAATCTCG+TGG 0.622566 1.1:+27630377 MS.gene062856:CDS
ACTTACTAATGCAGTTGAGA+CGG 0.623430 1.1:+27630083 MS.gene062856:CDS
CCATCGTCTAATTTAGATGG+TGG 0.631080 1.1:+27628491 MS.gene062856:CDS
CAAGCAACACAGATGGCAAG+AGG 0.631120 1.1:+27628235 MS.gene062856:CDS
CCACCATCTAAATTAGACGA+TGG 0.634267 1.1:-27628491 None:intergenic
AGTGCCCTGAAATTGGTCAA+GGG 0.638845 1.1:+27629517 MS.gene062856:CDS
GCAACACAGATGGCAAGAGG+AGG 0.648362 1.1:+27628238 MS.gene062856:CDS
GTTGAAGTCAGAAGACAGTG+AGG 0.660277 1.1:+27628419 MS.gene062856:CDS
TCAACTGCAGGATTCCACCA+TGG 0.662992 1.1:-27631124 None:intergenic
TGTTGGGGTACCTCAATGGG+TGG 0.666377 1.1:+27630530 MS.gene062856:CDS
TGAAAATGTAGGATCCATGG+TGG 0.671865 1.1:+27631110 MS.gene062856:intron
GTGTTCCAGTTAGACACCAG+CGG 0.680938 1.1:-27629015 None:intergenic
TATATGTAGGCTGACCAGCA+AGG 0.682237 1.1:-27628063 None:intergenic
ATTGATGTTAAGGAGAACCA+AGG 0.686095 1.1:+27629552 MS.gene062856:CDS
TTGATGTCACTAAAAGCTGG+TGG 0.692474 1.1:+27630970 MS.gene062856:CDS
ACGTCAACATATTTACTGAG+AGG 0.697906 1.1:+27628196 MS.gene062856:CDS
ATACACTGCCAGCTGCACCA+AGG 0.732299 1.1:-27629343 None:intergenic
ATCTCGTGGATACATCGATG+AGG 0.750732 1.1:+27630391 MS.gene062856:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCAATTATAATGATATTT+AGG + chr1.1:27629668-27629687 MS.gene062856:intron 10.0%
!! TTATCATTATAAATAAATTC+AGG - chr1.1:27629647-27629666 None:intergenic 10.0%
!!! TATTTTTTCATTATAGATTT+TGG + chr1.1:27628332-27628351 MS.gene062856:intron 10.0%
!! CATTGCAAAATTAATATTAT+TGG - chr1.1:27630189-27630208 None:intergenic 15.0%
!! AAAACCTAAAAAAGAACAAT+GGG - chr1.1:27630949-27630968 None:intergenic 20.0%
!! AATTATTAGTCAAATGTTCT+TGG + chr1.1:27631325-27631344 MS.gene062856:intron 20.0%
!! ATATCCATATTTGTTCATTA+TGG + chr1.1:27628695-27628714 MS.gene062856:CDS 20.0%
!! ATATTATTGGTAGAAGAATT+AGG - chr1.1:27630176-27630195 None:intergenic 20.0%
!! ATTGAGAAATGCATAAAATA+TGG - chr1.1:27631490-27631509 None:intergenic 20.0%
!! TTAACGAAACAAAAGAAAAA+GGG + chr1.1:27630847-27630866 MS.gene062856:intron 20.0%
!! TTTAACGAAACAAAAGAAAA+AGG + chr1.1:27630846-27630865 MS.gene062856:intron 20.0%
!!! AAAGTATTGTTTTTAGTCAA+TGG + chr1.1:27630715-27630734 MS.gene062856:intron 20.0%
!!! AAGAAATATTTTCAGATTGT+GGG - chr1.1:27629147-27629166 None:intergenic 20.0%
!!! ATTTATTTCACTTTTGTCAT+AGG + chr1.1:27629905-27629924 MS.gene062856:intron 20.0%
!!! TGAACATGTTAATTTTGAAA+AGG + chr1.1:27631350-27631369 MS.gene062856:intron 20.0%
!!! TTAGTTCTATAATGATAACA+AGG - chr1.1:27628143-27628162 None:intergenic 20.0%
!!! TTTTTAATTTGCTTCTGTAT+AGG + chr1.1:27629453-27629472 MS.gene062856:intron 20.0%
!!! TTTTTCTGTAATGAAAATGT+AGG + chr1.1:27631099-27631118 MS.gene062856:intron 20.0%
! AAACCTAAAAAAGAACAATG+GGG - chr1.1:27630948-27630967 None:intergenic 25.0%
! AAGATAAAAAATCAGCTACT+CGG - chr1.1:27630922-27630941 None:intergenic 25.0%
! ATAGGATTCTTAAGATTTGA+TGG + chr1.1:27630783-27630802 MS.gene062856:intron 25.0%
! ATAGTCAGAAATTATTCTGA+TGG + chr1.1:27630689-27630708 MS.gene062856:intron 25.0%
! CAAAACCTAAAAAAGAACAA+TGG - chr1.1:27630950-27630969 None:intergenic 25.0%
! CAACTAATATGTAATGTGAA+AGG + chr1.1:27628611-27628630 MS.gene062856:intron 25.0%
! GATTGCTTAAAAAAAAAACG+TGG - chr1.1:27631575-27631594 None:intergenic 25.0%
! TAACTGAAATACATACCATT+AGG - chr1.1:27631031-27631050 None:intergenic 25.0%
! TATAAAAACCCAGTAATCAA+GGG - chr1.1:27629952-27629971 None:intergenic 25.0%
! TATTAAGCAAAAGAGTTCAT+TGG + chr1.1:27629216-27629235 MS.gene062856:intron 25.0%
! TCAATCAATTGAATATCAGT+TGG - chr1.1:27629786-27629805 None:intergenic 25.0%
! TCCTAGCAATTTATAATTGT+GGG - chr1.1:27629110-27629129 None:intergenic 25.0%
! TGATATTGAGAACAATTTGA+CGG + chr1.1:27630628-27630647 MS.gene062856:intron 25.0%
!! AGAAATATTTTCAGATTGTG+GGG - chr1.1:27629146-27629165 None:intergenic 25.0%
!! AGTTTTCTTATCAAACTACA+TGG + chr1.1:27631404-27631423 MS.gene062856:intron 25.0%
!! GAAGAAATATTTTCAGATTG+TGG - chr1.1:27629148-27629167 None:intergenic 25.0%
!! GTAAAAGCTTAAATTTGCTT+GGG - chr1.1:27628121-27628140 None:intergenic 25.0%
!! TAAAAGCTTAAATTTGCTTG+GGG - chr1.1:27628120-27628139 None:intergenic 25.0%
!!! ACAATATTTTTTCAGCTAAG+AGG + chr1.1:27628456-27628475 MS.gene062856:intron 25.0%
!!! ACTTGCTACAATTTTTTAAC+AGG + chr1.1:27628163-27628182 MS.gene062856:intron 25.0%
!!! ATGTAGAGTTCTAAAATTGA+TGG - chr1.1:27628281-27628300 None:intergenic 25.0%
!!! GTTTTTCTTGAGTATTTTGA+CGG - chr1.1:27630570-27630589 None:intergenic 25.0%
AAACAAAGGATAAAGAAGGA+AGG + chr1.1:27629575-27629594 MS.gene062856:CDS 30.0%
AAAGCAACTAAGCTTTCTAT+TGG - chr1.1:27628581-27628600 None:intergenic 30.0%
AAGGAAACAAAGGATAAAGA+AGG + chr1.1:27629571-27629590 MS.gene062856:CDS 30.0%
AAGTATAGGCTACAAAAACA+TGG - chr1.1:27629753-27629772 None:intergenic 30.0%
ACAGTGAAGTTTCTTTACAT+TGG + chr1.1:27628847-27628866 MS.gene062856:intron 30.0%
AGAAAACAGAAGATGATATC+TGG + chr1.1:27631747-27631766 MS.gene062856:CDS 30.0%
AGAATGCCTATTCAATTGTT+GGG + chr1.1:27630514-27630533 MS.gene062856:CDS 30.0%
AGTCAACAAAACAGTATTTG+AGG - chr1.1:27631638-27631657 None:intergenic 30.0%
ATAAAAACCCAGTAATCAAG+GGG - chr1.1:27629951-27629970 None:intergenic 30.0%
ATAAAATCCCATAAAAAGCC+AGG + chr1.1:27628958-27628977 MS.gene062856:intron 30.0%
ATAATGAGGATTCATCGTAT+TGG + chr1.1:27631157-27631176 MS.gene062856:CDS 30.0%
ATACCATTAGGAAACATTTG+AGG - chr1.1:27631019-27631038 None:intergenic 30.0%
ATATTTGTTCATTATGGTGG+GGG + chr1.1:27628701-27628720 MS.gene062856:CDS 30.0%
ATCAATTGAATATCAGTTGG+TGG - chr1.1:27629783-27629802 None:intergenic 30.0%
ATTAGTCAACCAGAAACTAA+GGG - chr1.1:27631663-27631682 None:intergenic 30.0%
ATTGGTAGAAGAATTAGGAA+TGG - chr1.1:27630171-27630190 None:intergenic 30.0%
CACTTTAATTGTTTGTCCTA+TGG + chr1.1:27628514-27628533 MS.gene062856:CDS 30.0%
CAGTGAAGTTTCTTTACATT+GGG + chr1.1:27628848-27628867 MS.gene062856:intron 30.0%
CATATTTGTTCATTATGGTG+GGG + chr1.1:27628700-27628719 MS.gene062856:CDS 30.0%
CCATATTTGTTCATTATGGT+GGG + chr1.1:27628699-27628718 MS.gene062856:CDS 30.0%
CCTAGCAATTTATAATTGTG+GGG - chr1.1:27629109-27629128 None:intergenic 30.0%
CCTGTTTGAATTGAATGAAA+CGG - chr1.1:27630002-27630021 None:intergenic 30.0%
CTAGCAATTTATAATTGTGG+GGG - chr1.1:27629108-27629127 None:intergenic 30.0%
CTATAAAAACCCAGTAATCA+AGG - chr1.1:27629953-27629972 None:intergenic 30.0%
CTCCTAGCAATTTATAATTG+TGG - chr1.1:27629111-27629130 None:intergenic 30.0%
GCATAAAATATCATAGAAGC+CGG - chr1.1:27631433-27631452 None:intergenic 30.0%
TAATGAAAATGTAGGATCCA+TGG + chr1.1:27631107-27631126 MS.gene062856:intron 30.0%
TAATGAGGATTCATCGTATT+GGG + chr1.1:27631158-27631177 MS.gene062856:CDS 30.0%
TACAAGTGTTCAAAATCTTC+AGG + chr1.1:27628639-27628658 MS.gene062856:intron 30.0%
TAGCAATTTATAATTGTGGG+GGG - chr1.1:27629107-27629126 None:intergenic 30.0%
TCAATTGAATATCAGTTGGT+GGG - chr1.1:27629782-27629801 None:intergenic 30.0%
TCCATATTTGTTCATTATGG+TGG + chr1.1:27628698-27628717 MS.gene062856:CDS 30.0%
TCTCAATATCAACCTTGAAT+GGG - chr1.1:27630619-27630638 None:intergenic 30.0%
TGACTAATGAAAACAATCGT+TGG + chr1.1:27631675-27631694 MS.gene062856:intron 30.0%
TGTAAGAAGATTCATTGTGA+AGG + chr1.1:27631198-27631217 MS.gene062856:CDS 30.0%
TTAGTGTTATGAACATGTGA+AGG - chr1.1:27631284-27631303 None:intergenic 30.0%
TTCTCAATATCAACCTTGAA+TGG - chr1.1:27630620-27630639 None:intergenic 30.0%
TTTCTTATCAAACTACATGG+TGG + chr1.1:27631407-27631426 MS.gene062856:intron 30.0%
! AATCTCCTGTATCCTTTTAA+GGG + chr1.1:27631591-27631610 MS.gene062856:intron 30.0%
! AATTTTGCAATGTTTGCAGT+GGG + chr1.1:27630197-27630216 MS.gene062856:intron 30.0%
! CACTTTTATAAGAAGCTGAT+AGG - chr1.1:27628787-27628806 None:intergenic 30.0%
! CAGCTTCTTATAAAAGTGTA+AGG + chr1.1:27628789-27628808 MS.gene062856:intron 30.0%
! CTTGATTACTGGGTTTTTAT+AGG + chr1.1:27629951-27629970 MS.gene062856:intron 30.0%
! GAAATATTTTCAGATTGTGG+GGG - chr1.1:27629145-27629164 None:intergenic 30.0%
! GATATCATCTTCTGTTTTCT+TGG - chr1.1:27631747-27631766 None:intergenic 30.0%
! GGTAAAAGCTTAAATTTGCT+TGG - chr1.1:27628122-27628141 None:intergenic 30.0%
! TAATTTTGCAATGTTTGCAG+TGG + chr1.1:27630196-27630215 MS.gene062856:intron 30.0%
! TTATTCAGTTCTGCATTTTG+TGG - chr1.1:27630320-27630339 None:intergenic 30.0%
! TTCTTTATCCTTTGTTTCCT+TGG - chr1.1:27629572-27629591 None:intergenic 30.0%
!! GATGTCTTTAGTTAGTTTGT+TGG + chr1.1:27631522-27631541 MS.gene062856:intron 30.0%
!! GGAACTATCATTCTGAAATT+GGG + chr1.1:27629257-27629276 MS.gene062856:intron 30.0%
!! TGGAACTATCATTCTGAAAT+TGG + chr1.1:27629256-27629275 MS.gene062856:intron 30.0%
!! TTAATTTGCTTCTGTATAGG+TGG + chr1.1:27629456-27629475 MS.gene062856:intron 30.0%
!! TTTTGAGGACATTGATGTTA+AGG + chr1.1:27629542-27629561 MS.gene062856:CDS 30.0%
!!! AGTATTTGAGGACCTTTTTT+TGG - chr1.1:27631626-27631645 None:intergenic 30.0%
!!! ATATTTTTTCAGCTAAGAGG+AGG + chr1.1:27628459-27628478 MS.gene062856:intron 30.0%
!!! TGCTACAATTTTTTAACAGG+AGG + chr1.1:27628166-27628185 MS.gene062856:intron 30.0%
!!! TTTCCCCATTGTTCTTTTTT+AGG + chr1.1:27630942-27630961 MS.gene062856:intron 30.0%
AAATTCCCTTGACCAATTTC+AGG - chr1.1:27629525-27629544 None:intergenic 35.0%
AACCCATCGTCTAATTTAGA+TGG + chr1.1:27628488-27628507 MS.gene062856:CDS 35.0%
AATTCCCTTGACCAATTTCA+GGG - chr1.1:27629524-27629543 None:intergenic 35.0%
ACAGCACATATCAGATGATT+CGG - chr1.1:27630285-27630304 None:intergenic 35.0%
ACGTCAACATATTTACTGAG+AGG + chr1.1:27628196-27628215 MS.gene062856:CDS 35.0%
ACTTACTAATGCAGTTGAGA+CGG + chr1.1:27630083-27630102 MS.gene062856:CDS 35.0%
AGGTAAGATTCCTCTCAATT+AGG + chr1.1:27628555-27628574 MS.gene062856:intron 35.0%
AGTCAAGGATATTTGCATAG+TGG - chr1.1:27630066-27630085 None:intergenic 35.0%
ATGAACATGTGAAGGTGAAT+AGG - chr1.1:27631276-27631295 None:intergenic 35.0%
ATGACAAAAATTGAGAAGGG+AGG + chr1.1:27628009-27628028 MS.gene062856:CDS 35.0%
ATTCAGGCATGCATATTGAA+AGG - chr1.1:27629631-27629650 None:intergenic 35.0%
ATTGATGTTAAGGAGAACCA+AGG + chr1.1:27629552-27629571 MS.gene062856:CDS 35.0%
CAAACAGAACTGTGAAGTAA+AGG - chr1.1:27629428-27629447 None:intergenic 35.0%
CACCATCTAAATTAGACGAT+GGG - chr1.1:27628493-27628512 None:intergenic 35.0%
CATTAGTCAACCAGAAACTA+AGG - chr1.1:27631664-27631683 None:intergenic 35.0%
CCCACCATAATGAACAAATA+TGG - chr1.1:27628702-27628721 None:intergenic 35.0%
CCCCACAATTATAAATTGCT+AGG + chr1.1:27629106-27629125 MS.gene062856:intron 35.0%
CCGTTTCATTCAATTCAAAC+AGG + chr1.1:27629999-27630018 MS.gene062856:intron 35.0%
CGTGGTCAATGTTAGAAAAA+TGG - chr1.1:27631557-27631576 None:intergenic 35.0%
CTAACCCATTGCATATATGT+AGG - chr1.1:27628079-27628098 None:intergenic 35.0%
CTTTCCTGGTTTCAAAAATC+AGG - chr1.1:27628877-27628896 None:intergenic 35.0%
GAATGCCTATTCAATTGTTG+GGG + chr1.1:27630515-27630534 MS.gene062856:CDS 35.0%
GAGAATGCCTATTCAATTGT+TGG + chr1.1:27630513-27630532 MS.gene062856:CDS 35.0%
GATGTTGTCTTGACAACTTA+TGG + chr1.1:27628758-27628777 MS.gene062856:CDS 35.0%
GCTTTCTATTCAGAATAGCT+TGG + chr1.1:27629282-27629301 MS.gene062856:intron 35.0%
TAACAGCAAATCAGGATTAC+TGG - chr1.1:27628732-27628751 None:intergenic 35.0%
TATCTAACAATCACTGCTAG+TGG + chr1.1:27631049-27631068 MS.gene062856:intron 35.0%
TCAACTGCATTAGTAAGTCA+AGG - chr1.1:27630081-27630100 None:intergenic 35.0%
TCAGCCTACATATATGCAAT+GGG + chr1.1:27628072-27628091 MS.gene062856:CDS 35.0%
TCATACTCTAACAGCAAATC+AGG - chr1.1:27628740-27628759 None:intergenic 35.0%
TCCTGATAATTAACCTGAAG+TGG - chr1.1:27629040-27629059 None:intergenic 35.0%
TGTAGAATGTGCTATATGCA+TGG + chr1.1:27630442-27630461 MS.gene062856:CDS 35.0%
TTAGTCAACCAGAAACTAAG+GGG - chr1.1:27631662-27631681 None:intergenic 35.0%
TTCAGGCATGCATATTGAAA+GGG - chr1.1:27629630-27629649 None:intergenic 35.0%
TTGAAAACGCATTCAAAACC+AGG + chr1.1:27628668-27628687 MS.gene062856:CDS 35.0%
TTGTTGATGTCACTAAAAGC+TGG + chr1.1:27630967-27630986 MS.gene062856:CDS 35.0%
! AATTGGTCAAGGGAATTTTG+AGG + chr1.1:27629527-27629546 MS.gene062856:CDS 35.0%
! ACCACTTCAGGTTAATTATC+AGG + chr1.1:27629036-27629055 MS.gene062856:intron 35.0%
! ATCTCCTGTATCCTTTTAAG+GGG + chr1.1:27631592-27631611 MS.gene062856:intron 35.0%
! CAATCTCCTGTATCCTTTTA+AGG + chr1.1:27631590-27631609 MS.gene062856:intron 35.0%
! GGGTTAGTACAAATAGTACA+TGG + chr1.1:27628092-27628111 MS.gene062856:intron 35.0%
! TTTCTATTGGCCTAATTGAG+AGG - chr1.1:27628568-27628587 None:intergenic 35.0%
!! ATAGATTTTGGCAGATGCAA+TGG + chr1.1:27628344-27628363 MS.gene062856:intron 35.0%
!! CTTCATTTTTGATCTGTTGG+AGG + chr1.1:27630739-27630758 MS.gene062856:intron 35.0%
!! GGACTTCATTTTTGATCTGT+TGG + chr1.1:27630736-27630755 MS.gene062856:intron 35.0%
!! TAGATTTTGGCAGATGCAAT+GGG + chr1.1:27628345-27628364 MS.gene062856:intron 35.0%
!!! AATCGTTGGTTTTGTGAACA+GGG + chr1.1:27631689-27631708 MS.gene062856:intron 35.0%
!!! GTTTCCTGATTTTTGAAACC+AGG + chr1.1:27628870-27628889 MS.gene062856:intron 35.0%
!!! GTTTTGGGGCATATTCAAAA+GGG + chr1.1:27630413-27630432 MS.gene062856:CDS 35.0%
AAGGAGAACCAAGGAAACAA+AGG + chr1.1:27629561-27629580 MS.gene062856:CDS 40.0%
ACAAATATGGATATGCTGCC+TGG - chr1.1:27628689-27628708 None:intergenic 40.0%
AGAGAAATCTACATCCTTGC+TGG + chr1.1:27628049-27628068 MS.gene062856:CDS 40.0%
AGAGAATAGCATCTACCACA+GGG + chr1.1:27628897-27628916 MS.gene062856:intron 40.0%
AGATGCTATTCTCTCTTTCC+TGG - chr1.1:27628891-27628910 None:intergenic 40.0%
AGCAAAAGAGTTCATTGGTC+TGG + chr1.1:27629221-27629240 MS.gene062856:intron 40.0%
AGGTACCCCAACAATTGAAT+AGG - chr1.1:27630523-27630542 None:intergenic 40.0%
ATTTCCACAAGCAACACAGA+TGG + chr1.1:27628228-27628247 MS.gene062856:CDS 40.0%
CAATTTGACGGAGTCTTCAA+AGG + chr1.1:27630640-27630659 MS.gene062856:intron 40.0%
CAGCCTCAAATGTTTCCTAA+TGG + chr1.1:27631013-27631032 MS.gene062856:CDS 40.0%
CAGTATGTTGCACAAGGTAA+AGG + chr1.1:27630033-27630052 MS.gene062856:intron 40.0%
CCACCATCTAAATTAGACGA+TGG - chr1.1:27628494-27628513 None:intergenic 40.0%
CCATCGTCTAATTTAGATGG+TGG + chr1.1:27628491-27628510 MS.gene062856:CDS 40.0%
GGTGTAAAAACAGGATCATC+TGG - chr1.1:27630473-27630492 None:intergenic 40.0%
GTCAGCCTACATATATGCAA+TGG + chr1.1:27628071-27628090 MS.gene062856:CDS 40.0%
GTGCAACATACTGCTCAAAT+TGG - chr1.1:27630026-27630045 None:intergenic 40.0%
TCAAACTCTATCCAATCTCG+TGG + chr1.1:27630377-27630396 MS.gene062856:CDS 40.0%
TGAAAATGTAGGATCCATGG+TGG + chr1.1:27631110-27631129 MS.gene062856:intron 40.0%
TGATTCTTAGTAATCCAGGC+AGG + chr1.1:27628397-27628416 MS.gene062856:CDS 40.0%
TGTGCACATGGTGTAAAAAC+AGG - chr1.1:27630482-27630501 None:intergenic 40.0%
TTATCAAACTACATGGTGGC+CGG + chr1.1:27631411-27631430 MS.gene062856:intron 40.0%
TTGAGGAGCAAGCAATAATG+AGG + chr1.1:27631143-27631162 MS.gene062856:CDS 40.0%
TTGATGTCACTAAAAGCTGG+TGG + chr1.1:27630970-27630989 MS.gene062856:CDS 40.0%
TTGCATGAGCTTATAGCTCT+AGG - chr1.1:27631249-27631268 None:intergenic 40.0%
TTGTTCTCCCCTTGATTACT+GGG + chr1.1:27629941-27629960 MS.gene062856:intron 40.0%
TTTGAGCAGTATGTTGCACA+AGG + chr1.1:27630027-27630046 MS.gene062856:intron 40.0%
TTTGTTCTCCCCTTGATTAC+TGG + chr1.1:27629940-27629959 MS.gene062856:intron 40.0%
! AATTGTTGGGGTACCTCAAT+GGG + chr1.1:27630527-27630546 MS.gene062856:CDS 40.0%
! GATACATCGATGAGGTTTTG+GGG + chr1.1:27630399-27630418 MS.gene062856:CDS 40.0%
! GGATACATCGATGAGGTTTT+GGG + chr1.1:27630398-27630417 MS.gene062856:CDS 40.0%
! TGGATACATCGATGAGGTTT+TGG + chr1.1:27630397-27630416 MS.gene062856:CDS 40.0%
!! GACAACTTACTTTAGCTCTC+AGG - chr1.1:27629854-27629873 None:intergenic 40.0%
!! GCACTGATTCTTAGTAATCC+AGG + chr1.1:27628393-27628412 MS.gene062856:CDS 40.0%
!! TCAGCAACCTGGCTTTTTAT+GGG - chr1.1:27628968-27628987 None:intergenic 40.0%
!! TCTGTATAGGTGGACTAAGT+TGG + chr1.1:27629466-27629485 MS.gene062856:intron 40.0%
!!! CAATCGTTGGTTTTGTGAAC+AGG + chr1.1:27631688-27631707 MS.gene062856:intron 40.0%
!!! GGTTTTGGGGCATATTCAAA+AGG + chr1.1:27630412-27630431 MS.gene062856:CDS 40.0%
!!! TGAGTATTTTGACGGCAGAT+GGG - chr1.1:27630562-27630581 None:intergenic 40.0%
!!! TTGAGTATTTTGACGGCAGA+TGG - chr1.1:27630563-27630582 None:intergenic 40.0%
AACAGGGAACAGTGGAAGAT+CGG + chr1.1:27631705-27631724 MS.gene062856:intron 45.0%
AAGTGCCCTGAAATTGGTCA+AGG + chr1.1:27629516-27629535 MS.gene062856:CDS 45.0%
ACTTTGATCCCCTGCTCATA+GGG - chr1.1:27629500-27629519 None:intergenic 45.0%
AGAGGAATCTTACCTTCCAC+TGG - chr1.1:27628550-27628569 None:intergenic 45.0%
AGTGATACTGCCAAGTATGC+AGG + chr1.1:27630220-27630239 MS.gene062856:CDS 45.0%
AGTGCCCTGAAATTGGTCAA+GGG + chr1.1:27629517-27629536 MS.gene062856:CDS 45.0%
ATAGCACCACTCTGTACCAT+TGG - chr1.1:27628924-27628943 None:intergenic 45.0%
ATCGTATTGGGCAAAAGCGA+AGG + chr1.1:27631170-27631189 MS.gene062856:CDS 45.0%
ATCTCGTGGATACATCGATG+AGG + chr1.1:27630391-27630410 MS.gene062856:CDS 45.0%
CATAAAAAGCCAGGTTGCTG+AGG + chr1.1:27628967-27628986 MS.gene062856:intron 45.0%
CATCGATGTATCCACGAGAT+TGG - chr1.1:27630391-27630410 None:intergenic 45.0%
CTGCAAAACTGATGTGCACA+TGG - chr1.1:27630494-27630513 None:intergenic 45.0%
GAGAGAATAGCATCTACCAC+AGG + chr1.1:27628896-27628915 MS.gene062856:intron 45.0%
GGGGTCACATGTCCAAAAAA+AGG + chr1.1:27631611-27631630 MS.gene062856:intron 45.0%
GTGACCCCTTAAAAGGATAC+AGG - chr1.1:27631599-27631618 None:intergenic 45.0%
GTGAGCAGTCAGAATCTGAA+CGG + chr1.1:27629808-27629827 MS.gene062856:CDS 45.0%
GTTCAAAAGCCCTATGAGCA+GGG + chr1.1:27629488-27629507 MS.gene062856:intron 45.0%
GTTGAAGTCAGAAGACAGTG+AGG + chr1.1:27628419-27628438 MS.gene062856:CDS 45.0%
GTTTGTCCTATGGCGTTGTT+GGG + chr1.1:27628524-27628543 MS.gene062856:CDS 45.0%
TATATGTAGGCTGACCAGCA+AGG - chr1.1:27628066-27628085 None:intergenic 45.0%
TATGGCTGACAAGACTTCTG+TGG - chr1.1:27631472-27631491 None:intergenic 45.0%
TCCATCAGAAAGCCCATTCA+AGG + chr1.1:27630604-27630623 MS.gene062856:intron 45.0%
TCGTATTGGGCAAAAGCGAA+GGG + chr1.1:27631171-27631190 MS.gene062856:CDS 45.0%
TCTAACTGGAACACCACTTC+AGG + chr1.1:27629024-27629043 MS.gene062856:CDS 45.0%
TCTGTTGGAGGAATCCATTG+AGG + chr1.1:27630751-27630770 MS.gene062856:intron 45.0%
TGAGCAGTCAGAATCTGAAC+GGG + chr1.1:27629809-27629828 MS.gene062856:CDS 45.0%
TGGACATGTGACCCCTTAAA+AGG - chr1.1:27631606-27631625 None:intergenic 45.0%
TGTTTGTCCTATGGCGTTGT+TGG + chr1.1:27628523-27628542 MS.gene062856:CDS 45.0%
TTCAAAAGCCCTATGAGCAG+GGG + chr1.1:27629489-27629508 MS.gene062856:intron 45.0%
! ACCTTGAATGGGCTTTCTGA+TGG - chr1.1:27630608-27630627 None:intergenic 45.0%
! CAATTGTTGGGGTACCTCAA+TGG + chr1.1:27630526-27630545 MS.gene062856:CDS 45.0%
! GGATCAAAGTGCCCTGAAAT+TGG + chr1.1:27629510-27629529 MS.gene062856:CDS 45.0%
! GTTGACTTCCCCTTAGTTTC+TGG + chr1.1:27631651-27631670 MS.gene062856:intron 45.0%
! GTTTTGTGAACAGGGAACAG+TGG + chr1.1:27631697-27631716 MS.gene062856:intron 45.0%
! TCACTAAAAGCTGGTGGTGT+TGG + chr1.1:27630976-27630995 MS.gene062856:CDS 45.0%
!! CTCAGCAACCTGGCTTTTTA+TGG - chr1.1:27628969-27628988 None:intergenic 45.0%
!! TGGTCTGGAACTCTCTTTTC+TGG + chr1.1:27629236-27629255 MS.gene062856:intron 45.0%
!! TTGAATATCAGTTGGTGGGC+AGG - chr1.1:27629778-27629797 None:intergenic 45.0%
AGGAATCCATTGAGGAGGAG+AGG + chr1.1:27630759-27630778 MS.gene062856:intron 50.0%
ATTGCTTGCTCCTCAACTGC+AGG - chr1.1:27631139-27631158 None:intergenic 50.0%
CAAGCAACACAGATGGCAAG+AGG + chr1.1:27628235-27628254 MS.gene062856:CDS 50.0%
CACTTTGATCCCCTGCTCAT+AGG - chr1.1:27629501-27629520 None:intergenic 50.0%
CCGACCTCACTGACCAAAAA+CGG - chr1.1:27630121-27630140 None:intergenic 50.0%
CCTCACTGACCAAAAACGGA+TGG - chr1.1:27630117-27630136 None:intergenic 50.0%
CTGCTCAAGTCCTGCATACT+TGG - chr1.1:27630233-27630252 None:intergenic 50.0%
CTTTCTTGCGTGTGCAACCT+TGG + chr1.1:27629326-27629345 MS.gene062856:CDS 50.0%
GGAATCCATTGAGGAGGAGA+GGG + chr1.1:27630760-27630779 MS.gene062856:intron 50.0%
GGTTCAAAAGCCCTATGAGC+AGG + chr1.1:27629487-27629506 MS.gene062856:intron 50.0%
GTGTTCCAGTTAGACACCAG+CGG - chr1.1:27629018-27629037 None:intergenic 50.0%
GTTGGAGGAATCCATTGAGG+AGG + chr1.1:27630754-27630773 MS.gene062856:intron 50.0%
TCAACTGCAGGATTCCACCA+TGG - chr1.1:27631127-27631146 None:intergenic 50.0%
TCTTCTGACTTCAACCTGCC+TGG - chr1.1:27628414-27628433 None:intergenic 50.0%
TGGCAGATGCAATGGGACTT+GGG + chr1.1:27628352-27628371 MS.gene062856:CDS 50.0%
TTGGCAGATGCAATGGGACT+TGG + chr1.1:27628351-27628370 MS.gene062856:CDS 50.0%
! ATGGTGGAATCCTGCAGTTG+AGG + chr1.1:27631126-27631145 MS.gene062856:CDS 50.0%
! GTGCTGCAACCATCCGTTTT+TGG + chr1.1:27630105-27630124 MS.gene062856:CDS 50.0%
! TTGGTGGGCAGGACAAGTAT+AGG - chr1.1:27629767-27629786 None:intergenic 50.0%
!! CTTGCCATCTGTGTTGCTTG+TGG - chr1.1:27628235-27628254 None:intergenic 50.0%
!!! CCATCCGTTTTTGGTCAGTG+AGG + chr1.1:27630114-27630133 MS.gene062856:intron 50.0%
!!! CCGTTTTTGGTCAGTGAGGT+CGG + chr1.1:27630118-27630137 MS.gene062856:intron 50.0%
ATACACTGCCAGCTGCACCA+AGG - chr1.1:27629346-27629365 None:intergenic 55.0%
CAATAGCAGCCTCAGCAACC+TGG - chr1.1:27628979-27628998 None:intergenic 55.0%
CAGGGTCCAATGGTACAGAG+TGG + chr1.1:27628915-27628934 MS.gene062856:intron 55.0%
CCATTGAGGAGGAGAGGGAT+AGG + chr1.1:27630765-27630784 MS.gene062856:intron 55.0%
CCTATCCCTCTCCTCCTCAA+TGG - chr1.1:27630768-27630787 None:intergenic 55.0%
CTCTGTACCATTGGACCCTG+TGG - chr1.1:27628915-27628934 None:intergenic 55.0%
GCAACACAGATGGCAAGAGG+AGG + chr1.1:27628238-27628257 MS.gene062856:CDS 55.0%
GCATCTACCACAGGGTCCAA+TGG + chr1.1:27628905-27628924 MS.gene062856:intron 55.0%
TGGGCACTTACCACCCATTG+AGG - chr1.1:27630543-27630562 None:intergenic 55.0%
TTTGGTCAGTGAGGTCGGTG+TGG + chr1.1:27630123-27630142 MS.gene062856:intron 55.0%
! TGTTGGGGTACCTCAATGGG+TGG + chr1.1:27630530-27630549 MS.gene062856:CDS 55.0%
CACTGCCGCTGGTGTCTAAC+TGG + chr1.1:27629010-27629029 MS.gene062856:CDS 60.0%
CACTGGCCCAACAACGCCAT+AGG - chr1.1:27628533-27628552 None:intergenic 60.0%
CTATGGCGTTGTTGGGCCAG+TGG + chr1.1:27628531-27628550 MS.gene062856:intron 60.0%
! GTGTGCAACCTTGGTGCAGC+TGG + chr1.1:27629335-27629354 MS.gene062856:CDS 60.0%
CTCTGTCGTCACACTGCCGC+TGG + chr1.1:27628999-27629018 MS.gene062856:CDS 65.0%
GGCGTTGTTGGGCCAGTGGA+AGG + chr1.1:27628535-27628554 MS.gene062856:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 27628009 27631781 27628009 ID=MS.gene062856
chr1.1 mRNA 27628009 27631781 27628009 ID=MS.gene062856.t1;Parent=MS.gene062856
chr1.1 exon 27628009 27628093 27628009 ID=MS.gene062856.t1.exon1;Parent=MS.gene062856.t1
chr1.1 CDS 27628009 27628093 27628009 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27628185 27628261 27628185 ID=MS.gene062856.t1.exon2;Parent=MS.gene062856.t1
chr1.1 CDS 27628185 27628261 27628185 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27628348 27628448 27628348 ID=MS.gene062856.t1.exon3;Parent=MS.gene062856.t1
chr1.1 CDS 27628348 27628448 27628348 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27628478 27628549 27628478 ID=MS.gene062856.t1.exon4;Parent=MS.gene062856.t1
chr1.1 CDS 27628478 27628549 27628478 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27628661 27628805 27628661 ID=MS.gene062856.t1.exon5;Parent=MS.gene062856.t1
chr1.1 CDS 27628661 27628805 27628661 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27628980 27629045 27628980 ID=MS.gene062856.t1.exon6;Parent=MS.gene062856.t1
chr1.1 CDS 27628980 27629045 27628980 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27629295 27629361 27629295 ID=MS.gene062856.t1.exon7;Parent=MS.gene062856.t1
chr1.1 CDS 27629295 27629361 27629295 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27629506 27629596 27629506 ID=MS.gene062856.t1.exon8;Parent=MS.gene062856.t1
chr1.1 CDS 27629506 27629596 27629506 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27629764 27629863 27629764 ID=MS.gene062856.t1.exon9;Parent=MS.gene062856.t1
chr1.1 CDS 27629764 27629863 27629764 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27630049 27630130 27630049 ID=MS.gene062856.t1.exon10;Parent=MS.gene062856.t1
chr1.1 CDS 27630049 27630130 27630049 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27630216 27630551 27630216 ID=MS.gene062856.t1.exon11;Parent=MS.gene062856.t1
chr1.1 CDS 27630216 27630551 27630216 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27630964 27631034 27630964 ID=MS.gene062856.t1.exon12;Parent=MS.gene062856.t1
chr1.1 CDS 27630964 27631034 27630964 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27631121 27631219 27631121 ID=MS.gene062856.t1.exon13;Parent=MS.gene062856.t1
chr1.1 CDS 27631121 27631219 27631121 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
chr1.1 exon 27631710 27631781 27631710 ID=MS.gene062856.t1.exon14;Parent=MS.gene062856.t1
chr1.1 CDS 27631710 27631781 27631710 ID=cds.MS.gene062856.t1;Parent=MS.gene062856.t1
Gene Sequence

>MS.gene062856

ATGACAAAAATTGAGAAGGGAGGTGATGATGAAAATGCTGAGAGAAATCTACATCCTTGCTGGTCAGCCTACATATATGCAATGGGTTAGTACAAATAGTACATGGTTCCCCAAGCAAATTTAAGCTTTTACCTTGTTATCATTATAGAACTAAACTTGCTACAATTTTTTAACAGGAGGTCAATATACGTCAACATATTTACTGAGAGGCAGCAAGAAATTTCCACAAGCAACACAGATGGCAAGAGGAGGAGTGAGTTTGTTTAAAGCCATCAATTTTAGAACTCTACATGTTACATTCAGTTTGAACAGTTAGCTAATTGTATTTTTTCATTATAGATTTTGGCAGATGCAATGGGACTTGGGAAGACTGTTATGACAATTGCACTGATTCTTAGTAATCCAGGCAGGTTGAAGTCAGAAGACAGTGAGGAGAGAGCGTATATGACAATATTTTTTCAGCTAAGAGGAGGAATGTTAACCCATCGTCTAATTTAGATGGTGGCACTTTAATTGTTTGTCCTATGGCGTTGTTGGGCCAGTGGAAGGTAAGATTCCTCTCAATTAGGCCAATAGAAAGCTTAGTTGCTTTTTATATATCTCAACTAATATGTAATGTGAAAGGTAATTTACAAGTGTTCAAAATCTTCAGGATGAACTTGAAAACGCATTCAAAACCAGGCAGCATATCCATATTTGTTCATTATGGTGGGGGAAGAACCAGTAATCCTGATTTGCTGTTAGAGTATGATGTTGTCTTGACAACTTATGGTGTCCTATCAGCTTCTTATAAAAGTGTAAGGAAATGTTTCACTGTATTTTATTTTCGTCAATTTGCACAGTGAAGTTTCTTTACATTGGGTTTCCTGATTTTTGAAACCAGGAAAGAGAGAATAGCATCTACCACAGGGTCCAATGGTACAGAGTGGTGCTATACGAAGCTCATCATATAAAATCCCATAAAAAGCCAGGTTGCTGAGGCTGCTATTGCTCTGTCGTCACACTGCCGCTGGTGTCTAACTGGAACACCACTTCAGGTTAATTATCAGGAACAATTGTGTGTAAATTATAAAATTGCTATGAGAAAAGTACTTGCCCCCCACAATTATAAATTGCTAGGAGAAAAGTACTCGCCCCCACAATCTGAAAATATTTCTTCATCAGCATTTCAGTACTAACTAGTTTATACTATAACGAGCTTATAGTTTATTAAGCAAAAGAGTTCATTGGTCTGGAACTCTCTTTTCTGGAACTATCATTCTGAAATTGGGATGCTTTCTATTCAGAATAGCTTGGAAGATCTATTCAGTCTCTTGTCTTTCTTGCGTGTGCAACCTTGGTGCAGCTGGCAGTGTATGTTAATGTTATGCTAACTTGTAACTAGTGTAAATTTGATCATTGTTGAGTTTATTGAGACCTTTACTTCACAGTTCTGTTTGTTACTTTTTTAATTTGCTTCTGTATAGGTGGACTAAGTTGGTTCAAAAGCCCTATGAGCAGGGGATCAAAGTGCCCTGAAATTGGTCAAGGGAATTTTGAGGACATTGATGTTAAGGAGAACCAAGGAAACAAAGGATAAAGAAGGAAGGTAGTCATTCTCACTTCATGTGCACTGTGTCCCTTTCAATATGCATGCCTGAATTTATTTATAATGATAAATATCAATTATAATGATATTTAGGTATTCAATTAATTGTGTGTGAATTTATTTATTTATTTATAGTGATATTGATCAGTTATGCCATGTTTTTGTAGCCTATACTTGTCCTGCCCACCAACTGATATTCAATTGATTGAATGTGAGCAGTCAGAATCTGAACGGGACTTCTATGATGCTCTCTTCCTGAGAGCTAAAGTAAGTTGTCACAGCTTGCTATCTGTAATATTTGAATAGCAATTTATTTCACTTTTGTCATAGGTTTTACTAGAAATTTGTTCTCCCCTTGATTACTGGGTTTTTATAGGTAACTATTTATGTTTGACATGTAAACCGTTTCATTCAATTCAAACAGGTCCAATTTGAGCAGTATGTTGCACAAGGTAAAGGTTCTTAACCACTATGCAAATATCCTTGACTTACTAATGCAGTTGAGACGGTGCTGCAACCATCCGTTTTTGGTCAGTGAGGTCGGTGTGGCAAACACATTAAACTGTTCTTTCCATTCCTAATTCTTCTACCAATAATATTAATTTTGCAATGTTTGCAGTGGGAGTGATACTGCCAAGTATGCAGGACTTGAGCAGACTTGCAAGAAAATTTCTAGAGTCTCATACCGAATCATCTGATATGTGCTGTGAAAGTGATGCACCACAAAATGCAGAACTGAATAAACTTGCTAGTAATTTCTTACAGAATTCTGCTTCTGCTTCAAACTCTATCCAATCTCGTGGATACATCGATGAGGTTTTGGGGCATATTCAAAAGGGTGAAACTGTAGAATGTGCTATATGCATGGAATCACCAGATGATCCTGTTTTTACACCATGTGCACATCAGTTTTGCAGAGAATGCCTATTCAATTGTTGGGGTACCTCAATGGGTGGTAAGTGCCCATCTGCCGTCAAAATACTCAAGAAAAACGATCTTATTGTACTTCCATCAGAAAGCCCATTCAAGGTTGATATTGAGAACAATTTGACGGAGTCTTCAAAGGTTTCTAAGCTCTTTGATTTCTTAGACATAGTCAGAAATTATTCTGATGGAAAAAAGTATTGTTTTTAGTCAATGGACTTCATTTTTGATCTGTTGGAGGAATCCATTGAGGAGGAGAGGGATAGGATTCTTAAGATTTGATGGAAAGTTGACTCAGAAGCAGAGAGAAAAAGTTTTGAAAGAATTTAACGAAACAAAAGAAAAAGGGTACGTAATATCAAGTTGAACTGTATCATTGTCATTGAACTTTAGCACAACCGAGTAGCTGATTTTTTATCTTTTTCCCCATTGTTCTTTTTTAGGTTTTGTTGATGTCACTAAAAGCTGGTGGTGTTGGCTTGAACTTGACAGCAGCCTCAAATGTTTCCTAATGGTATGTATTTCAGTTATCTAACAATCACTGCTAGTGGTTTTGATGTCGAACAACATTTTCTTAGTTTTTCTGTAATGAAAATGTAGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGGATTCATCGTATTGGGCAAAAGCGAAGGGTTACTGTAAGAAGATTCATTGTGAAGGTTAGCTTATTCGTTTTCACAACTTTCCTAGAGCTATAAGCTCATGCAATAATCCTATTCACCTTCACATGTTCATAACACTAAGAACAACATAGCTGACATCTTAATTATTAGTCAAATGTTCTTGGATTGAACATGTTAATTTTGAAAAGGATTGAACATGTTAATTAAACATTATTTTACTAGTTTTCTTATCAAACTACATGGTGGCCGGCTTCTATGATATTTTATGCTGCTTATCTTGACTTTCCACAGAAGTCTTGTCAGCCATATTTTATGCATTTCTCAATATTTTTCTCTTTGATGTCTTTAGTTAGTTTGTTGGATAGAAAATCCATTTTTCTAACATTGACCACGTTTTTTTTTTAAGCAATCTCCTGTATCCTTTTAAGGGGTCACATGTCCAAAAAAAGGTCCTCAAATACTGTTTTGTTGACTTCCCCTTAGTTTCTGGTTGACTAATGAAAACAATCGTTGGTTTTGTGAACAGGGAACAGTGGAAGATCGGTTGCAACAAGTGCAAGCCAAGAAAACAGAAGATGATATCTGGTGCACTCACTGA
Protein sequence

>MS.gene062856.t1

MTKIEKGGDDENAERNLHPCWSAYIYAMGGQYTSTYLLRGSKKFPQATQMARGGILADAMGLGKTVMTIALILSNPGRLKSEDSEERARNVNPSSNLDGGTLIVCPMALLGQMNLKTHSKPGSISIFVHYGGGRTSNPDLLLEYDVVLTTYGVLSASYKSVAEAAIALSSHCRWCLTGTPLQNSLEDLFSLLSFLRVQPWCSWQSGDQSALKLVKGILRTLMLRRTKETKDKEGSLYLSCPPTDIQLIECEQSESERDFYDALFLRAKVKVLNHYANILDLLMQLRRCCNHPFLVMGVILPSMQDLSRLARKFLESHTESSDMCCESDAPQNAELNKLASNFLQNSASASNSIQSRGYIDEVLGHIQKGETVECAICMESPDDPVFTPCAHQFCRECLFNCWGTSMGGFVDVTKSWWCWLELDSSLKCFLMDPWWNPAVEEQAIMRIHRIGQKRRVTVRRFIVKGTVEDRLQQVQAKKTEDDIWCTH