AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062998

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062998.t1 MTR_4g073100 97.378 267 7 0 1 267 1 267 0.0 544
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062998.t1 AT2G16770 61.423 267 83 6 1 266 1 248 4.24e-109 315
MS.gene062998.t1 AT2G16770 61.423 267 83 6 1 266 1 248 4.24e-109 315
MS.gene062998.t1 AT4G35040 63.469 271 83 8 1 266 1 260 5.13e-109 316
MS.gene062998.t1 AT4G35040 63.469 271 83 8 1 266 1 260 5.13e-109 316
MS.gene062998.t1 AT4G35040 63.469 271 83 8 1 266 1 260 5.13e-109 316
MS.gene062998.t1 AT4G35040 63.469 271 83 8 1 266 1 260 5.13e-109 316
MS.gene062998.t1 AT3G51960 54.478 134 54 3 39 171 13 140 1.98e-45 151
MS.gene062998.t1 AT3G51960 54.478 134 54 3 39 171 52 179 4.04e-45 152
MS.gene062998.t1 AT3G51960 52.239 134 56 2 39 171 52 178 1.30e-43 148

Find 80 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAGGATTGAAGGGGAAAT+TGG 0.206995 4.2:+35279941 MS.gene062998:CDS
GTGTTTGTTGGTTGATATTA+GGG 0.255056 4.2:+35279919 MS.gene062998:CDS
CCCAACCGGTCGCTTCTTAC+TGG 0.266035 4.2:-35279744 None:intergenic
GATCCTTGAGCCCCAAATTC+TGG 0.270466 4.2:-35280165 None:intergenic
AGTGTTTGTTGGTTGATATT+AGG 0.273430 4.2:+35279918 MS.gene062998:CDS
GTGTATGGGAGGCCAGAATT+TGG 0.299733 4.2:+35280153 MS.gene062998:CDS
TGTATGGGAGGCCAGAATTT+GGG 0.316343 4.2:+35280154 MS.gene062998:CDS
GTTGCAAGGGCAGGCTGCTT+TGG 0.335855 4.2:+35279874 MS.gene062998:CDS
ATATATTATTCATCCGGCTT+TGG 0.355641 4.2:-35281096 None:intergenic
GTTTGAAATTCAGCCATGTT+TGG 0.367715 4.2:-35279527 None:intergenic
CCGAATGAGGATGGATTTGA+TGG 0.369232 4.2:+35280109 MS.gene062998:CDS
CTCAAGGATCTTCGTGGTTG+TGG 0.376487 4.2:+35280178 MS.gene062998:CDS
GGAGGATTGAAGGGGAAATT+GGG 0.382575 4.2:+35279942 MS.gene062998:CDS
ATTTCAAACAAGTGGTTCAA+TGG 0.405614 4.2:+35279541 MS.gene062998:CDS
GTTTGAGAGTCTCCAGTGTA+TGG 0.417641 4.2:+35280138 MS.gene062998:CDS
TGCGAGGTTGAAGTGTTTGT+TGG 0.420725 4.2:+35279907 MS.gene062998:CDS
GCAAGGGCAGGCTGCTTTGG+AGG 0.426440 4.2:+35279877 MS.gene062998:CDS
GGCTGCGTCGTTGGAGGATG+AGG 0.428168 4.2:+35279811 MS.gene062998:CDS
TCATCACACTGCACATTACA+AGG 0.429810 4.2:-35280034 None:intergenic
CAACTTATATATTATTCATC+CGG 0.437000 4.2:-35281102 None:intergenic
GATCTTCGTGGTTGTGGAGG+TGG 0.440100 4.2:+35280184 MS.gene062998:CDS
ACCGCCTCTTTATTCCCAAC+CGG 0.455765 4.2:-35279758 None:intergenic
TCAGCAGCAATCTTCCCATC+TGG 0.456534 4.2:-35280076 None:intergenic
ACATTCGCGGGTTTCTGATA+CGG 0.475335 4.2:-35279971 None:intergenic
GAAAGCTAGGGCTGCGTCGT+TGG 0.478279 4.2:+35279802 MS.gene062998:CDS
GGGTCTCGTGCAGCCAAAGC+CGG 0.486937 4.2:+35281083 MS.gene062998:CDS
CCATCAAATCCATCCTCATT+CGG 0.488283 4.2:-35280109 None:intergenic
AGCTAGGGCTGCGTCGTTGG+AGG 0.489293 4.2:+35279805 MS.gene062998:CDS
CTGCTGAAGATGATCAGGTT+GGG 0.489651 4.2:+35279687 MS.gene062998:CDS
AGGCCAGAATTTGGGGCTCA+AGG 0.491612 4.2:+35280162 MS.gene062998:CDS
CAAGCTTCCAGTAAAAGAAA+AGG 0.495698 4.2:+35280232 MS.gene062998:CDS
ATCTTCAGCAGGGACAATCT+TGG 0.499105 4.2:-35279675 None:intergenic
TTGGGGCTCAAGGATCTTCG+TGG 0.500226 4.2:+35280172 MS.gene062998:CDS
GGGTTCATCACATGAGAGCC+AGG 0.513240 4.2:-35280013 None:intergenic
GCATATTGCCTTCGTCCAGA+TGG 0.514127 4.2:+35280061 MS.gene062998:CDS
TGTCCCTGCTGAAGATGATC+AGG 0.516014 4.2:+35279682 MS.gene062998:CDS
CCAGTAAGAAGCGACCGGTT+GGG 0.517346 4.2:+35279744 MS.gene062998:CDS
ATCGTGAGAAGAAGAAAGCT+AGG 0.518063 4.2:+35279789 MS.gene062998:CDS
TAATGTGCAGTGTGATGATC+GGG 0.521659 4.2:+35280039 MS.gene062998:CDS
CTTTGGAGGCCGAAGTTGCG+AGG 0.525689 4.2:+35279891 MS.gene062998:CDS
CCAACCTGATCATCTTCAGC+AGG 0.525807 4.2:-35279686 None:intergenic
GATGAGGAAGTTGCAAGGGC+AGG 0.525833 4.2:+35279865 MS.gene062998:CDS
TCCAGTAAGAAGCGACCGGT+TGG 0.526553 4.2:+35279743 MS.gene062998:CDS
AGGATGAGGTCATGAAATTG+AGG 0.534541 4.2:+35279825 MS.gene062998:CDS
ATCGCGGGATTCACATTCGC+GGG 0.538798 4.2:-35279983 None:intergenic
CATATTGCCTTCGTCCAGAT+GGG 0.548979 4.2:+35280062 MS.gene062998:CDS
AATTCTGGCCTCCCATACAC+TGG 0.551814 4.2:-35280150 None:intergenic
ATGGCTGAATTTCAAACAAG+TGG 0.554218 4.2:+35279533 MS.gene062998:CDS
GACCAGGTGGGTTACACGTG+TGG 0.559695 4.2:-35279613 None:intergenic
AATCCCGCGATGAATTTGCC+TGG 0.562632 4.2:+35279995 MS.gene062998:CDS
ACACTTCAACCTCGCAACTT+CGG 0.570082 4.2:-35279900 None:intergenic
GTTTGTTGGTTGATATTAGG+GGG 0.578395 4.2:+35279921 MS.gene062998:CDS
GGATGAGGTCATGAAATTGA+GGG 0.578672 4.2:+35279826 MS.gene062998:CDS
ACACGTGTGGGTATGAGTAC+AGG 0.580524 4.2:-35279600 None:intergenic
TGTTTGTTGGTTGATATTAG+GGG 0.581606 4.2:+35279920 MS.gene062998:CDS
GTAATGTGCAGTGTGATGAT+CGG 0.581966 4.2:+35280038 MS.gene062998:CDS
GAAGTCCAGTAAGAAGCGAC+CGG 0.585566 4.2:+35279739 MS.gene062998:CDS
TTTGAGAGTCTCCAGTGTAT+GGG 0.588557 4.2:+35280139 MS.gene062998:CDS
TGAAGTGGCGTTGCCGAATG+AGG 0.594233 4.2:+35280096 MS.gene062998:CDS
GTATGGGAGGCCAGAATTTG+GGG 0.595109 4.2:+35280155 MS.gene062998:CDS
ATTTGATGAGGAAGTTGCAA+GGG 0.596253 4.2:+35279861 MS.gene062998:CDS
GTGGCGTTGCCGAATGAGGA+TGG 0.599193 4.2:+35280100 MS.gene062998:CDS
CATCGCGGGATTCACATTCG+CGG 0.599241 4.2:-35279984 None:intergenic
AAGGATCTTCGTGGTTGTGG+AGG 0.602836 4.2:+35280181 MS.gene062998:CDS
CATTTGATGAGGAAGTTGCA+AGG 0.604562 4.2:+35279860 MS.gene062998:CDS
ACCCACACGTGTAACCCACC+TGG 0.607124 4.2:+35279611 MS.gene062998:CDS
ACCAGGTGGGTTACACGTGT+GGG 0.610384 4.2:-35279612 None:intergenic
GAGCCAGGCAAATTCATCGC+GGG 0.610422 4.2:-35279998 None:intergenic
TCGTGAGAAGAAGAAAGCTA+GGG 0.612179 4.2:+35279790 MS.gene062998:CDS
TGGGAAGATTGCTGCTGAAG+TGG 0.614233 4.2:+35280081 MS.gene062998:CDS
CTTTGAATCAGCATTTGATG+AGG 0.616238 4.2:+35279849 MS.gene062998:CDS
CAATCTTCCCATCTGGACGA+AGG 0.622375 4.2:-35280069 None:intergenic
CCTGCTGAAGATGATCAGGT+TGG 0.627520 4.2:+35279686 MS.gene062998:CDS
GAGAGTCTCCAGTGTATGGG+AGG 0.629740 4.2:+35280142 MS.gene062998:CDS
GCGACCGGTTGGGAATAAAG+AGG 0.649541 4.2:+35279754 MS.gene062998:CDS
CAACCTGATCATCTTCAGCA+GGG 0.684116 4.2:-35279685 None:intergenic
ACCGGTTGGGAATAAAGAGG+CGG 0.690479 4.2:+35279757 MS.gene062998:CDS
CATCACACTGCACATTACAA+GGG 0.696358 4.2:-35280033 None:intergenic
AGAGCCAGGCAAATTCATCG+CGG 0.740100 4.2:-35279999 None:intergenic
GAATTGACATTAGACAACGT+CGG 0.759673 4.2:-35280208 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAATGCAAAAACAAATA+AGG - chr4.2:35280521-35280540 None:intergenic 20.0%
!! CATAATGCAAAAACAAATAA+GGG - chr4.2:35280520-35280539 None:intergenic 20.0%
!! TTGGAGAAATTGAAATTTAA+AGG + chr4.2:35280842-35280861 MS.gene062998:intron 20.0%
!!! TAACAGATCTTTATTTAACA+GGG + chr4.2:35281060-35281079 MS.gene062998:intron 20.0%
!!! TTTTTTTGATGAATTGTTGA+AGG + chr4.2:35279568-35279587 MS.gene062998:CDS 20.0%
! TATATGTATGAGTTAACAAG+TGG + chr4.2:35280789-35280808 MS.gene062998:intron 25.0%
!! AACAGATCTTTATTTAACAG+GGG + chr4.2:35281061-35281080 MS.gene062998:intron 25.0%
!! CTAACAGATCTTTATTTAAC+AGG + chr4.2:35281059-35281078 MS.gene062998:intron 25.0%
!! TCATACATATATAAAGCATC+TGG - chr4.2:35280780-35280799 None:intergenic 25.0%
AAACCATGACAAAAAATGCT+AGG - chr4.2:35280374-35280393 None:intergenic 30.0%
AACAAAAGCCTTTCCATATA+AGG - chr4.2:35280579-35280598 None:intergenic 30.0%
ACTCTGGTGTAATTACTTTA+GGG + chr4.2:35280990-35281009 MS.gene062998:intron 30.0%
ATTTCAAACAAGTGGTTCAA+TGG + chr4.2:35279541-35279560 MS.gene062998:CDS 30.0%
CTAACAAGAACTCTATAAGT+TGG - chr4.2:35280747-35280766 None:intergenic 30.0%
TGGAAGATCTTGTCATAATT+TGG - chr4.2:35280817-35280836 None:intergenic 30.0%
! ACAGATCTTTATTTAACAGG+GGG + chr4.2:35281062-35281081 MS.gene062998:intron 30.0%
! AGTGTTTGTTGGTTGATATT+AGG + chr4.2:35279918-35279937 MS.gene062998:CDS 30.0%
! GATCTGTTAGACCATTTTAA+AGG - chr4.2:35281049-35281068 None:intergenic 30.0%
! GTGTTTGTTGGTTGATATTA+GGG + chr4.2:35279919-35279938 MS.gene062998:CDS 30.0%
! TGTTTGTTGGTTGATATTAG+GGG + chr4.2:35279920-35279939 MS.gene062998:CDS 30.0%
! TTGCTTCTCATCCTTTAAAA+TGG + chr4.2:35281035-35281054 MS.gene062998:intron 30.0%
!! AGAGTTCTTGTTAGTTTGTA+TGG + chr4.2:35280753-35280772 MS.gene062998:intron 30.0%
!!! AGCATTTTTTGTCATGGTTT+GGG + chr4.2:35280374-35280393 MS.gene062998:intron 30.0%
!!! TAGCATTTTTTGTCATGGTT+TGG + chr4.2:35280373-35280392 MS.gene062998:intron 30.0%
ACGAGACAAACAATCATCAT+TGG - chr4.2:35280402-35280421 None:intergenic 35.0%
AGAGTCAATCACAATTGCTT+TGG - chr4.2:35280975-35280994 None:intergenic 35.0%
ATGCACATACTCTACTAGAA+AGG + chr4.2:35280267-35280286 MS.gene062998:intron 35.0%
ATGGCTGAATTTCAAACAAG+TGG + chr4.2:35279533-35279552 MS.gene062998:CDS 35.0%
ATTTGATGAGGAAGTTGCAA+GGG + chr4.2:35279861-35279880 MS.gene062998:CDS 35.0%
CAAGCTTCCAGTAAAAGAAA+AGG + chr4.2:35280232-35280251 MS.gene062998:CDS 35.0%
CTTTGAATCAGCATTTGATG+AGG + chr4.2:35279849-35279868 MS.gene062998:CDS 35.0%
GAATTGACATTAGACAACGT+CGG - chr4.2:35280211-35280230 None:intergenic 35.0%
GACTCTGGTGTAATTACTTT+AGG + chr4.2:35280989-35281008 MS.gene062998:intron 35.0%
TGCACATACTCTACTAGAAA+GGG + chr4.2:35280268-35280287 MS.gene062998:intron 35.0%
TTAAAATCCGGAATGAGCAA+GGG - chr4.2:35280693-35280712 None:intergenic 35.0%
TTATGACAAGATCTTCCAGT+AGG + chr4.2:35280819-35280838 MS.gene062998:intron 35.0%
TTTCAATTTCTCCAACCTAC+TGG - chr4.2:35280837-35280856 None:intergenic 35.0%
! AAAGCAATTGTGATTGACTC+TGG + chr4.2:35280974-35280993 MS.gene062998:intron 35.0%
! CAGATCTTTATTTAACAGGG+GGG + chr4.2:35281063-35281082 MS.gene062998:intron 35.0%
! GTCATCACCTTTTCTTTTAC+TGG - chr4.2:35280242-35280261 None:intergenic 35.0%
! GTTTGAAATTCAGCCATGTT+TGG - chr4.2:35279530-35279549 None:intergenic 35.0%
! GTTTGTTGGTTGATATTAGG+GGG + chr4.2:35279921-35279940 MS.gene062998:CDS 35.0%
! TGCTCATTCCGGATTTTAAA+GGG + chr4.2:35280694-35280713 MS.gene062998:intron 35.0%
! TTGCTCATTCCGGATTTTAA+AGG + chr4.2:35280693-35280712 MS.gene062998:intron 35.0%
! TTTAAAATCCGGAATGAGCA+AGG - chr4.2:35280694-35280713 None:intergenic 35.0%
!! ACTAGACTCCCTTTAAAATC+CGG - chr4.2:35280705-35280724 None:intergenic 35.0%
!!! CATCCTAGCATTTTTTGTCA+TGG + chr4.2:35280368-35280387 MS.gene062998:intron 35.0%
!!! TCTCAACTTTTTCGTACAGT+GGG - chr4.2:35280903-35280922 None:intergenic 35.0%
AATGTTACCCTTGCTCATTC+CGG + chr4.2:35280683-35280702 MS.gene062998:intron 40.0%
AGGATGAGGTCATGAAATTG+AGG + chr4.2:35279825-35279844 MS.gene062998:CDS 40.0%
ATATTAGGGGGAGGATTGAA+GGG + chr4.2:35279933-35279952 MS.gene062998:CDS 40.0%
ATCGTGAGAAGAAGAAAGCT+AGG + chr4.2:35279789-35279808 MS.gene062998:CDS 40.0%
CATCACACTGCACATTACAA+GGG - chr4.2:35280036-35280055 None:intergenic 40.0%
CATTTGATGAGGAAGTTGCA+AGG + chr4.2:35279860-35279879 MS.gene062998:CDS 40.0%
CCATCAAATCCATCCTCATT+CGG - chr4.2:35280112-35280131 None:intergenic 40.0%
GGATGAGGTCATGAAATTGA+GGG + chr4.2:35279826-35279845 MS.gene062998:CDS 40.0%
GTAATGTGCAGTGTGATGAT+CGG + chr4.2:35280038-35280057 MS.gene062998:CDS 40.0%
GTGTGAGTGTGTGAAAAATC+AGG - chr4.2:35279638-35279657 None:intergenic 40.0%
TAATGTGCAGTGTGATGATC+GGG + chr4.2:35280039-35280058 MS.gene062998:CDS 40.0%
TCATCACACTGCACATTACA+AGG - chr4.2:35280037-35280056 None:intergenic 40.0%
TCGTGAGAAGAAGAAAGCTA+GGG + chr4.2:35279790-35279809 MS.gene062998:CDS 40.0%
TGACTCTGCCTTATATGGAA+AGG + chr4.2:35280568-35280587 MS.gene062998:intron 40.0%
TTTGAGAGTCTCCAGTGTAT+GGG + chr4.2:35280139-35280158 MS.gene062998:CDS 40.0%
!!! GTCTCAACTTTTTCGTACAG+TGG - chr4.2:35280904-35280923 None:intergenic 40.0%
ACACTTCAACCTCGCAACTT+CGG - chr4.2:35279903-35279922 None:intergenic 45.0%
ACATTCGCGGGTTTCTGATA+CGG - chr4.2:35279974-35279993 None:intergenic 45.0%
ATCTTCAGCAGGGACAATCT+TGG - chr4.2:35279678-35279697 None:intergenic 45.0%
CAACCTGATCATCTTCAGCA+GGG - chr4.2:35279688-35279707 None:intergenic 45.0%
CATATTGCCTTCGTCCAGAT+GGG + chr4.2:35280062-35280081 MS.gene062998:CDS 45.0%
CTGCTGAAGATGATCAGGTT+GGG + chr4.2:35279687-35279706 MS.gene062998:CDS 45.0%
GACAAGATCTTCCAGTAGGT+TGG + chr4.2:35280823-35280842 MS.gene062998:intron 45.0%
GATATTAGGGGGAGGATTGA+AGG + chr4.2:35279932-35279951 MS.gene062998:CDS 45.0%
GGAGGATTGAAGGGGAAATT+GGG + chr4.2:35279942-35279961 MS.gene062998:CDS 45.0%
GTGAAAAATCAGGACCAGGT+GGG - chr4.2:35279628-35279647 None:intergenic 45.0%
GTGTGTGAAAAATCAGGACC+AGG - chr4.2:35279632-35279651 None:intergenic 45.0%
GTTTGAGAGTCTCCAGTGTA+TGG + chr4.2:35280138-35280157 MS.gene062998:CDS 45.0%
TATTAGGGGGAGGATTGAAG+GGG + chr4.2:35279934-35279953 MS.gene062998:CDS 45.0%
TGTATGGGAGGCCAGAATTT+GGG + chr4.2:35280154-35280173 MS.gene062998:CDS 45.0%
TGTGAAAAATCAGGACCAGG+TGG - chr4.2:35279629-35279648 None:intergenic 45.0%
! CCGAATGAGGATGGATTTGA+TGG + chr4.2:35280109-35280128 MS.gene062998:CDS 45.0%
! GTAGCTGACTCTGCCTTATA+TGG + chr4.2:35280563-35280582 MS.gene062998:intron 45.0%
! TGCGAGGTTGAAGTGTTTGT+TGG + chr4.2:35279907-35279926 MS.gene062998:CDS 45.0%
! TGTTGGTTGATATTAGGGGG+AGG + chr4.2:35279924-35279943 MS.gene062998:CDS 45.0%
!!! CGTGTTTTCGAGTCCAAACA+TGG + chr4.2:35279514-35279533 MS.gene062998:CDS 45.0%
AAGGATCTTCGTGGTTGTGG+AGG + chr4.2:35280181-35280200 MS.gene062998:CDS 50.0%
AATCCCGCGATGAATTTGCC+TGG + chr4.2:35279995-35280014 MS.gene062998:CDS 50.0%
AATTCTGGCCTCCCATACAC+TGG - chr4.2:35280153-35280172 None:intergenic 50.0%
ACACGTGTGGGTATGAGTAC+AGG - chr4.2:35279603-35279622 None:intergenic 50.0%
ACCGCCTCTTTATTCCCAAC+CGG - chr4.2:35279761-35279780 None:intergenic 50.0%
ACCGGTTGGGAATAAAGAGG+CGG + chr4.2:35279757-35279776 MS.gene062998:CDS 50.0%
AGAGCCAGGCAAATTCATCG+CGG - chr4.2:35280002-35280021 None:intergenic 50.0%
CAATCTTCCCATCTGGACGA+AGG - chr4.2:35280072-35280091 None:intergenic 50.0%
CCAACCTGATCATCTTCAGC+AGG - chr4.2:35279689-35279708 None:intergenic 50.0%
CCTGCTGAAGATGATCAGGT+TGG + chr4.2:35279686-35279705 MS.gene062998:CDS 50.0%
CTCAAGGATCTTCGTGGTTG+TGG + chr4.2:35280178-35280197 MS.gene062998:CDS 50.0%
GAAGTCCAGTAAGAAGCGAC+CGG + chr4.2:35279739-35279758 MS.gene062998:CDS 50.0%
GATCCTTGAGCCCCAAATTC+TGG - chr4.2:35280168-35280187 None:intergenic 50.0%
GCATATTGCCTTCGTCCAGA+TGG + chr4.2:35280061-35280080 MS.gene062998:CDS 50.0%
GGGAGGATTGAAGGGGAAAT+TGG + chr4.2:35279941-35279960 MS.gene062998:CDS 50.0%
GTATGGGAGGCCAGAATTTG+GGG + chr4.2:35280155-35280174 MS.gene062998:CDS 50.0%
GTGTATGGGAGGCCAGAATT+TGG + chr4.2:35280153-35280172 MS.gene062998:CDS 50.0%
TCAGCAGCAATCTTCCCATC+TGG - chr4.2:35280079-35280098 None:intergenic 50.0%
TGGGAAGATTGCTGCTGAAG+TGG + chr4.2:35280081-35280100 MS.gene062998:CDS 50.0%
TGTCCCTGCTGAAGATGATC+AGG + chr4.2:35279682-35279701 MS.gene062998:CDS 50.0%
ATCGCGGGATTCACATTCGC+GGG - chr4.2:35279986-35280005 None:intergenic 55.0%
CATCGCGGGATTCACATTCG+CGG - chr4.2:35279987-35280006 None:intergenic 55.0%
CCAGTAAGAAGCGACCGGTT+GGG + chr4.2:35279744-35279763 MS.gene062998:CDS 55.0%
GAGAGTCTCCAGTGTATGGG+AGG + chr4.2:35280142-35280161 MS.gene062998:CDS 55.0%
GAGCCAGGCAAATTCATCGC+GGG - chr4.2:35280001-35280020 None:intergenic 55.0%
GATCTTCGTGGTTGTGGAGG+TGG + chr4.2:35280184-35280203 MS.gene062998:CDS 55.0%
GATGAGGAAGTTGCAAGGGC+AGG + chr4.2:35279865-35279884 MS.gene062998:CDS 55.0%
GCGACCGGTTGGGAATAAAG+AGG + chr4.2:35279754-35279773 MS.gene062998:CDS 55.0%
GGGTTCATCACATGAGAGCC+AGG - chr4.2:35280016-35280035 None:intergenic 55.0%
TCCAGTAAGAAGCGACCGGT+TGG + chr4.2:35279743-35279762 MS.gene062998:CDS 55.0%
TGAAGTGGCGTTGCCGAATG+AGG + chr4.2:35280096-35280115 MS.gene062998:CDS 55.0%
TTGGGGCTCAAGGATCTTCG+TGG + chr4.2:35280172-35280191 MS.gene062998:CDS 55.0%
! AGGCCAGAATTTGGGGCTCA+AGG + chr4.2:35280162-35280181 MS.gene062998:CDS 55.0%
!! ACCAGGTGGGTTACACGTGT+GGG - chr4.2:35279615-35279634 None:intergenic 55.0%
ACCCACACGTGTAACCCACC+TGG + chr4.2:35279611-35279630 MS.gene062998:CDS 60.0%
CCCAACCGGTCGCTTCTTAC+TGG - chr4.2:35279747-35279766 None:intergenic 60.0%
GAAAGCTAGGGCTGCGTCGT+TGG + chr4.2:35279802-35279821 MS.gene062998:CDS 60.0%
GTGGCGTTGCCGAATGAGGA+TGG + chr4.2:35280100-35280119 MS.gene062998:CDS 60.0%
GTTGCAAGGGCAGGCTGCTT+TGG + chr4.2:35279874-35279893 MS.gene062998:CDS 60.0%
! CTTTGGAGGCCGAAGTTGCG+AGG + chr4.2:35279891-35279910 MS.gene062998:CDS 60.0%
!! GACCAGGTGGGTTACACGTG+TGG - chr4.2:35279616-35279635 None:intergenic 60.0%
AGCTAGGGCTGCGTCGTTGG+AGG + chr4.2:35279805-35279824 MS.gene062998:CDS 65.0%
GGCTGCGTCGTTGGAGGATG+AGG + chr4.2:35279811-35279830 MS.gene062998:CDS 65.0%
GGGTCTCGTGCAGCCAAAGC+CGG + chr4.2:35281083-35281102 MS.gene062998:CDS 65.0%
! GCAAGGGCAGGCTGCTTTGG+AGG + chr4.2:35279877-35279896 MS.gene062998:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 35279479 35281109 35279479 ID=MS.gene062998
chr4.2 mRNA 35279479 35281109 35279479 ID=MS.gene062998.t1;Parent=MS.gene062998
chr4.2 exon 35279479 35280253 35279479 ID=MS.gene062998.t1.exon1;Parent=MS.gene062998.t1
chr4.2 CDS 35279479 35280253 35279479 ID=cds.MS.gene062998.t1;Parent=MS.gene062998.t1
chr4.2 exon 35281081 35281109 35281081 ID=MS.gene062998.t1.exon2;Parent=MS.gene062998.t1
chr4.2 CDS 35281081 35281109 35281081 ID=cds.MS.gene062998.t1;Parent=MS.gene062998.t1
Gene Sequence

>MS.gene062998

ATGGAAGACGGTGAACTTGATTTCTCAAATCAAGTCGTGTTTTCGAGTCCAAACATGGCTGAATTTCAAACAAGTGGTTCAATGGATAGTTTTTTTGATGAATTGTTGAAGGATACACACGCCTGTACTCATACCCACACGTGTAACCCACCTGGTCCTGATTTTTCACACACTCACACGTGTTATCATGTTCACACCAAGATTGTCCCTGCTGAAGATGATCAGGTTGGGACTGATGATACTGCTGAATCTGCTGAGAAGAAGTCCAGTAAGAAGCGACCGGTTGGGAATAAAGAGGCGGTTAAGAAGTATCGTGAGAAGAAGAAAGCTAGGGCTGCGTCGTTGGAGGATGAGGTCATGAAATTGAGGGCTTTGAATCAGCATTTGATGAGGAAGTTGCAAGGGCAGGCTGCTTTGGAGGCCGAAGTTGCGAGGTTGAAGTGTTTGTTGGTTGATATTAGGGGGAGGATTGAAGGGGAAATTGGGTCGTTTCCGTATCAGAAACCCGCGAATGTGAATCCCGCGATGAATTTGCCTGGCTCTCATGTGATGAACCCTTGTAATGTGCAGTGTGATGATCGGGCATATTGCCTTCGTCCAGATGGGAAGATTGCTGCTGAAGTGGCGTTGCCGAATGAGGATGGATTTGATGGTTGTGAGTTTGAGAGTCTCCAGTGTATGGGAGGCCAGAATTTGGGGCTCAAGGATCTTCGTGGTTGTGGAGGTGGACCGACGTTGTCTAATGTCAATTCTCAAGCTTCCAGTAAAAGAAAAGGTGATGACTGATTATGCACATACTCTACTAGAAAGGGTTAAATATTGTTTTTTAAAACTTAGTTCATACTTATATTTGATTTCGTTTAATTGCTGCTGCATGTTGTGTTTTGATCATCCTAGCATTTTTTGTCATGGTTTGGGATCCAATGATGATTGTTTGTCTCGTTGTTTGATTTTTGCTTTGTAAACACTATAAAACATTGAGAGTGAGAATTTTAGTACAAAGAAAGAGCTTCAGAGATGAAGCATCAATTTCAATAACCCTTATTTGTTTTTGCATTATGTTTAGTTGCTAAAATTGACTCATGTAGCTGACTCTGCCTTATATGGAAAGGCTTTTGTTGTTTTTGTTTGTTTAATTGCTAAAAATACATATCTGTTCTTATCTCTAGTAATGAAATCTGATTGCTATGTTTTATAGATGATGAATGTTACCCTTGCTCATTCCGGATTTTAAAGGGAGTCTAGTAATTATTAGTACTAGTATTCCAACTTATAGAGTTCTTGTTAGTTTGTATGGACCAGATGCTTTATATATGTATGAGTTAACAAGTGGTTCCAAATTATGACAAGATCTTCCAGTAGGTTGGAGAAATTGAAATTTAAAGGTTTGAAGTCTTGAATGATTATAGTGAACATTTTTTCCCACTGTACGAAAAAGTTGAGACTAGATTTTCTTAATGAAAATTTGATAATATAATTTTGTATCGCTATTTCCAAAGCAATTGTGATTGACTCTGGTGTAATTACTTTAGGGCATTGAAGTTGCTTATTCATTCTTGCTTCTCATCCTTTAAAATGGTCTAACAGATCTTTATTTAACAGGGGGGTCTCGTGCAGCCAAAGCCGGATGA
Protein sequence

>MS.gene062998.t1

MEDGELDFSNQVVFSSPNMAEFQTSGSMDSFFDELLKDTHACTHTHTCNPPGPDFSHTHTCYHVHTKIVPAEDDQVGTDDTAESAEKKSSKKRPVGNKEAVKKYREKKKARAASLEDEVMKLRALNQHLMRKLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKPANVNPAMNLPGSHVMNPCNVQCDDRAYCLRPDGKIAAEVALPNEDGFDGCEFESLQCMGGQNLGLKDLRGCGGGPTLSNVNSQASSKRKGGSRAAKAG