Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063012.t1 | XP_013450939.1 | 81.2 | 542 | 97 | 3 | 5 | 541 | 285 | 826 | 5.80E-242 | 847.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063012.t1 | Q84P17 | 63.6 | 374 | 86 | 6 | 547 | 879 | 363 | 727 | 5.7e-129 | 463.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063012.t1 | A0A072U5F2 | 81.2 | 542 | 97 | 3 | 5 | 541 | 147 | 688 | 4.2e-242 | 847.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene063012.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063012.t1 | MTR_6g011450 | 84.556 | 518 | 75 | 3 | 29 | 541 | 309 | 826 | 0.0 | 838 |
| MS.gene063012.t1 | MTR_6g011450 | 84.556 | 518 | 75 | 3 | 29 | 541 | 171 | 688 | 0.0 | 837 |
| MS.gene063012.t1 | MTR_4g073340 | 81.365 | 542 | 65 | 4 | 1 | 541 | 1 | 507 | 0.0 | 801 |
| MS.gene063012.t1 | MTR_8g086050 | 82.258 | 372 | 18 | 5 | 547 | 879 | 367 | 729 | 0.0 | 606 |
| MS.gene063012.t1 | MTR_8g085680 | 71.237 | 372 | 59 | 5 | 547 | 879 | 366 | 728 | 1.03e-178 | 533 |
| MS.gene063012.t1 | MTR_8g086050 | 86.142 | 267 | 15 | 3 | 547 | 800 | 367 | 624 | 3.17e-156 | 472 |
| MS.gene063012.t1 | MTR_8g085680 | 69.527 | 338 | 55 | 5 | 547 | 845 | 366 | 694 | 3.98e-155 | 472 |
| MS.gene063012.t1 | MTR_8g086050 | 85.470 | 234 | 12 | 3 | 547 | 767 | 367 | 591 | 2.47e-131 | 407 |
| MS.gene063012.t1 | MTR_6g011470 | 71.837 | 245 | 33 | 3 | 285 | 528 | 1 | 210 | 5.09e-112 | 342 |
| MS.gene063012.t1 | MTR_2g056120 | 49.591 | 367 | 135 | 6 | 547 | 872 | 363 | 720 | 4.94e-111 | 357 |
| MS.gene063012.t1 | MTR_8g085680 | 76.630 | 184 | 30 | 1 | 547 | 717 | 366 | 549 | 3.88e-90 | 298 |
| MS.gene063012.t1 | MTR_7g103840 | 33.526 | 173 | 110 | 3 | 362 | 531 | 846 | 1016 | 5.79e-30 | 128 |
| MS.gene063012.t1 | MTR_7g103840 | 33.526 | 173 | 110 | 3 | 362 | 531 | 848 | 1018 | 5.88e-30 | 128 |
| MS.gene063012.t1 | MTR_1g061130 | 34.104 | 173 | 107 | 4 | 362 | 529 | 839 | 1009 | 2.61e-28 | 123 |
| MS.gene063012.t1 | MTR_1g061130 | 34.104 | 173 | 107 | 4 | 362 | 529 | 839 | 1009 | 2.94e-28 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063012.t1 | AT1G55320 | 63.904 | 374 | 85 | 7 | 547 | 879 | 147 | 511 | 4.82e-157 | 470 |
| MS.gene063012.t1 | AT1G55320 | 63.636 | 374 | 86 | 6 | 547 | 879 | 363 | 727 | 1.74e-153 | 468 |
| MS.gene063012.t1 | AT4G04885 | 44.297 | 526 | 242 | 15 | 39 | 541 | 303 | 800 | 2.27e-112 | 363 |
| MS.gene063012.t1 | AT5G23050 | 46.448 | 366 | 146 | 6 | 547 | 871 | 358 | 714 | 4.73e-101 | 330 |
| MS.gene063012.t1 | AT5G23050 | 47.881 | 236 | 101 | 4 | 547 | 769 | 358 | 584 | 1.22e-64 | 228 |
| MS.gene063012.t1 | AT1G66500 | 35.000 | 360 | 168 | 14 | 210 | 534 | 66 | 394 | 2.37e-45 | 169 |
| MS.gene063012.t1 | AT5G43620 | 36.111 | 288 | 134 | 10 | 279 | 534 | 119 | 388 | 2.68e-42 | 160 |
| MS.gene063012.t1 | AT2G36480 | 32.941 | 170 | 106 | 3 | 362 | 531 | 786 | 947 | 1.72e-23 | 107 |
| MS.gene063012.t1 | AT2G36480 | 32.941 | 170 | 106 | 3 | 362 | 531 | 786 | 947 | 1.72e-23 | 107 |
Find 244 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTCAATCCTTTGTTTA+AGG | 0.103198 | 4.2:+35141218 | MS.gene063012:CDS |
| CCCTTGTATGCAGGTTATTT+TGG | 0.133360 | 4.2:+35139445 | MS.gene063012:intron |
| CTATTGCTGGCCTACAAATT+TGG | 0.134649 | 4.2:+35138309 | MS.gene063012:CDS |
| CCATGATGAGGTTTACTTTA+AGG | 0.136545 | 4.2:+35140315 | MS.gene063012:CDS |
| GGATGCAGGTGTTACCATTT+TGG | 0.185825 | 4.2:+35139290 | MS.gene063012:intron |
| TACATAATGCACATGTATTT+TGG | 0.206485 | 4.2:-35134643 | None:intergenic |
| AAACAGCTCTTTCAGTTTCC+TGG | 0.223690 | 4.2:+35134010 | MS.gene063012:CDS |
| CCCCTGCGGCCTCAAGCTTT+TGG | 0.226216 | 4.2:+35139580 | MS.gene063012:CDS |
| TCTCCTCAAGGCCATGGTTT+TGG | 0.228125 | 4.2:+35138403 | MS.gene063012:CDS |
| TTATATCATTGCTTTCTAAA+TGG | 0.249459 | 4.2:+35138355 | MS.gene063012:CDS |
| TGCGAGAGGGCTTCTGCTTA+TGG | 0.258664 | 4.2:-35134487 | None:intergenic |
| ACGCGGAGCATGCACATTTA+TGG | 0.263678 | 4.2:-35133613 | None:intergenic |
| CAGGGCTGATGAATGCATTT+TGG | 0.275186 | 4.2:+35141110 | MS.gene063012:intron |
| CATCAAGAGCACTTCGTATT+GGG | 0.284804 | 4.2:-35138252 | None:intergenic |
| CATGATGAGGTTTACTTTAA+GGG | 0.286532 | 4.2:+35140316 | MS.gene063012:CDS |
| TTATTCCATTAGGCGTATTA+AGG | 0.289551 | 4.2:-35134730 | None:intergenic |
| GCACTTGCTGCAACGGTAAC+AGG | 0.291227 | 4.2:-35133498 | None:intergenic |
| TGACGAACCTTCAGAAGATT+TGG | 0.298615 | 4.2:-35134332 | None:intergenic |
| AAGAGCTGTTTGCAATTCTT+TGG | 0.300209 | 4.2:-35133998 | None:intergenic |
| GCTTACTGCCAGAAGTTTCT+TGG | 0.305569 | 4.2:-35133305 | None:intergenic |
| GCTTGGAACGGTTCCCAAAA+TGG | 0.305618 | 4.2:-35139304 | None:intergenic |
| TCTGTGTTGCAACTGAAAAT+AGG | 0.307405 | 4.2:+35141145 | MS.gene063012:CDS |
| ATGTGTATTAGCAGGTTCTT+AGG | 0.307494 | 4.2:+35140739 | MS.gene063012:intron |
| ATGCCTGTTGTTATTCCATT+AGG | 0.318753 | 4.2:-35134740 | None:intergenic |
| GGTTTATTCCCTGTCTCTCT+TGG | 0.324602 | 4.2:+35140265 | MS.gene063012:CDS |
| CTGTGTTGCAACTGAAAATA+GGG | 0.326082 | 4.2:+35141146 | MS.gene063012:CDS |
| ATTTATTCCACCAATGTTCA+TGG | 0.328257 | 4.2:-35140829 | None:intergenic |
| ATCCTTATAACAAGCTGTTC+TGG | 0.328959 | 4.2:-35141171 | None:intergenic |
| TATTGCTGGCCTACAAATTT+GGG | 0.330034 | 4.2:+35138310 | MS.gene063012:CDS |
| AGAAACCATTACTTCTACTA+TGG | 0.330076 | 4.2:-35133443 | None:intergenic |
| CCTCCACATAATTCAATGAT+TGG | 0.330215 | 4.2:-35139523 | None:intergenic |
| ATAACTGATGAAGAATTCTT+TGG | 0.332236 | 4.2:-35133174 | None:intergenic |
| ATGCATTTAGCATGAATAAT+GGG | 0.333257 | 4.2:-35134782 | None:intergenic |
| GATTCGAATGGATTCCTAAC+AGG | 0.333615 | 4.2:-35133672 | None:intergenic |
| ACAAATTTGGGATGGGTGAT+AGG | 0.340700 | 4.2:+35138322 | MS.gene063012:CDS |
| CGAGTCCAAGGAATAGCTTT+TGG | 0.340865 | 4.2:-35138223 | None:intergenic |
| TCTAGGAAGATCGCCATATA+AGG | 0.342211 | 4.2:-35134372 | None:intergenic |
| TCTGCAATCAGTGCCTTATA+TGG | 0.351640 | 4.2:+35134359 | MS.gene063012:CDS |
| CTGCTATTGACGTTCAAGTT+GGG | 0.355743 | 4.2:+35138281 | MS.gene063012:CDS |
| GGTTTCTTGCAACCAACTAT+TGG | 0.360158 | 4.2:+35133459 | MS.gene063012:CDS |
| TTCCAAGCTTAGTGAAATCT+TGG | 0.364156 | 4.2:+35139319 | MS.gene063012:CDS |
| TATGCATTTAGCATGAATAA+TGG | 0.367648 | 4.2:-35134783 | None:intergenic |
| GGTAGAGCATGTGGGCCAGC+TGG | 0.367975 | 4.2:-35134056 | None:intergenic |
| AACAGCTCTTTCAGTTTCCT+GGG | 0.369668 | 4.2:+35134011 | MS.gene063012:CDS |
| TCAGCGTCAAGGGTGTTTCC+TGG | 0.373151 | 4.2:+35133528 | MS.gene063012:CDS |
| TGGCAGTAAGCCTTTGTTAG+TGG | 0.376982 | 4.2:+35133317 | MS.gene063012:CDS |
| TCAAAAGTTGCTGGCAGAAC+TGG | 0.381258 | 4.2:-35133579 | None:intergenic |
| TAGGCATCAATTAGAGCTCT+TGG | 0.388106 | 4.2:-35133267 | None:intergenic |
| TGTGACTTCTGTGCTCATCT+TGG | 0.389046 | 4.2:-35134427 | None:intergenic |
| GGCATAACAAGTTGTGCATT+TGG | 0.389349 | 4.2:-35133960 | None:intergenic |
| TTCCAAGATTTCACTAAGCT+TGG | 0.392624 | 4.2:-35139321 | None:intergenic |
| GGGACTTCCCGTAATGTAAC+TGG | 0.392704 | 4.2:-35139560 | None:intergenic |
| GCCCAGAACAGCTTGTTATA+AGG | 0.396426 | 4.2:+35141169 | MS.gene063012:CDS |
| GCTGATTAGGCAACTGATAC+AGG | 0.398235 | 4.2:-35133794 | None:intergenic |
| TCCTTATAACAAGCTGTTCT+GGG | 0.403001 | 4.2:-35141170 | None:intergenic |
| AAGTTGGGGATGTCTATTGC+TGG | 0.403132 | 4.2:+35138296 | MS.gene063012:CDS |
| AAGGGAATGCCCTTGCATAA+AGG | 0.411507 | 4.2:+35140334 | MS.gene063012:CDS |
| TAACAAGTTGTGCATTTGGC+AGG | 0.415660 | 4.2:-35133956 | None:intergenic |
| GACAAAAGCCAAGAAACTTC+TGG | 0.416293 | 4.2:+35133297 | MS.gene063012:CDS |
| TTGCCACCTTTACCTCCAGC+TGG | 0.419948 | 4.2:+35134041 | MS.gene063012:CDS |
| GTGACTTCTGTGCTCATCTT+GGG | 0.422924 | 4.2:-35134426 | None:intergenic |
| GATTGGGATTAGGTAGAATC+TGG | 0.424134 | 4.2:-35134079 | None:intergenic |
| AATCCAATCATTGAATTATG+TGG | 0.424565 | 4.2:+35139520 | MS.gene063012:CDS |
| AAAGAAAGAAGATGAAGAGT+TGG | 0.425274 | 4.2:+35134601 | MS.gene063012:CDS |
| CCATCAAGAGCACTTCGTAT+TGG | 0.425421 | 4.2:-35138253 | None:intergenic |
| GGATTCTTCGATGGAAATAT+AGG | 0.431337 | 4.2:-35133651 | None:intergenic |
| CTGTTTGCAATTCTTTGGCC+TGG | 0.431824 | 4.2:-35133993 | None:intergenic |
| CCAATACGAAGTGCTCTTGA+TGG | 0.432832 | 4.2:+35138253 | MS.gene063012:CDS |
| GAAGGACCAGGATTGGGATT+AGG | 0.436097 | 4.2:-35134089 | None:intergenic |
| GTGGACAAACGCCACCATTC+CGG | 0.438771 | 4.2:+35133850 | MS.gene063012:CDS |
| GATCCCTCATTACCCTCCTC+AGG | 0.443183 | 4.2:-35141436 | None:intergenic |
| CTCCAAAAGCTTGAGGCCGC+AGG | 0.443253 | 4.2:-35139582 | None:intergenic |
| GTGGCTAGGTGCAGAGGCAT+TGG | 0.444504 | 4.2:+35134532 | MS.gene063012:CDS |
| TTCATCTTGGTGGGAATACT+CGG | 0.444524 | 4.2:+35133142 | MS.gene063012:CDS |
| GCTTGCGTCCAGTTACATTA+CGG | 0.444712 | 4.2:+35139552 | MS.gene063012:CDS |
| GACACAGAAGGACCAGGATT+GGG | 0.445177 | 4.2:-35134095 | None:intergenic |
| GCGTTTGTCCACTGTTATGC+GGG | 0.451893 | 4.2:-35133839 | None:intergenic |
| GTATACCTTAATACGCCTAA+TGG | 0.453857 | 4.2:+35134725 | MS.gene063012:CDS |
| CTTGCGTCCAGTTACATTAC+GGG | 0.455274 | 4.2:+35139553 | MS.gene063012:CDS |
| CGCCTCGTTTCAAAAGTTGC+TGG | 0.461501 | 4.2:-35133588 | None:intergenic |
| TGGAAATATAGGAGTTATGC+TGG | 0.461860 | 4.2:-35133640 | None:intergenic |
| TAAGTAAATTGTGACGCTGC+TGG | 0.462016 | 4.2:-35133891 | None:intergenic |
| TTCCATCGAAGAATCCTGTT+AGG | 0.463431 | 4.2:+35133658 | MS.gene063012:CDS |
| GCTCATCTTGGGACTTGAAT+CGG | 0.465641 | 4.2:-35134415 | None:intergenic |
| CTTTGGCCTGGCGAAGGAAG+TGG | 0.465990 | 4.2:-35133981 | None:intergenic |
| TTGGGAGCTGAATCAGCTCC+AGG | 0.466055 | 4.2:+35134551 | MS.gene063012:CDS |
| TCAGATGCTCCAAGAGAGAC+AGG | 0.473039 | 4.2:-35140274 | None:intergenic |
| ATCACCCATCCCAAATTTGT+AGG | 0.473339 | 4.2:-35138319 | None:intergenic |
| TCACTGTAAAACTTGTCAAA+AGG | 0.474303 | 4.2:-35134671 | None:intergenic |
| GCCTTTGTTAGTGGAGCGAC+CGG | 0.474907 | 4.2:+35133326 | MS.gene063012:CDS |
| GATATAATCAAGAGAATGGT+TGG | 0.477992 | 4.2:+35140771 | MS.gene063012:CDS |
| GGCCCAAGGTGTTATGTCAT+TGG | 0.480316 | 4.2:+35134166 | MS.gene063012:CDS |
| CCATGTTCATGCACAGGAAA+AGG | 0.480750 | 4.2:-35133741 | None:intergenic |
| TCTGATGAGAAACCAATAGT+TGG | 0.483041 | 4.2:-35133471 | None:intergenic |
| ACTTATAGCACTTCTTTGCC+AGG | 0.484285 | 4.2:+35133909 | MS.gene063012:CDS |
| GCATCTCTTTCTTTGTACCA+TGG | 0.485412 | 4.2:+35138379 | MS.gene063012:CDS |
| AGCACAGCATCAATGACAAC+TGG | 0.485665 | 4.2:+35139610 | MS.gene063012:CDS |
| TGCTATTGACGTTCAAGTTG+GGG | 0.485865 | 4.2:+35138282 | MS.gene063012:CDS |
| TGTGGGCCAGCTGGAGGTAA+AGG | 0.486896 | 4.2:-35134047 | None:intergenic |
| ACGCCTAATGGAATAACAAC+AGG | 0.488809 | 4.2:+35134737 | MS.gene063012:CDS |
| GAGATCCAAAAGCTATTCCT+TGG | 0.489267 | 4.2:+35138218 | MS.gene063012:CDS |
| TTAGCATTTATTGATTCGAA+TGG | 0.491940 | 4.2:-35133684 | None:intergenic |
| ATAGATTTAGTTACCAGCGC+AGG | 0.494952 | 4.2:-35134200 | None:intergenic |
| TGGCTAGGTGCAGAGGCATT+GGG | 0.497013 | 4.2:+35134533 | MS.gene063012:CDS |
| TACGAAGTGCTCTTGATGGA+TGG | 0.497932 | 4.2:+35138257 | MS.gene063012:CDS |
| GGAAGATGTTCGAGGAAACT+CGG | 0.500060 | 4.2:-35141405 | None:intergenic |
| TGACACAGAAGGACCAGGAT+TGG | 0.501011 | 4.2:-35134096 | None:intergenic |
| ATCAGACCGGGTAGCTGATT+AGG | 0.502180 | 4.2:-35133807 | None:intergenic |
| CTGAAGAGGAGGAGTTCGAT+TGG | 0.502985 | 4.2:+35133394 | MS.gene063012:CDS |
| GGCATGGACAGGTCGCAGTT+AGG | 0.505187 | 4.2:+35134758 | MS.gene063012:CDS |
| CCACAAGTTGTGCACTGTCT+AGG | 0.505428 | 4.2:-35134389 | None:intergenic |
| TCATCAAAACATCTCTTTCG+CGG | 0.506613 | 4.2:-35133207 | None:intergenic |
| TAATTTGATTAGTTCACTCA+TGG | 0.508846 | 4.2:+35134145 | MS.gene063012:CDS |
| GTTCCTTGTGTTGGTGAAGT+GGG | 0.510523 | 4.2:+35140244 | MS.gene063012:CDS |
| ACTATGATTGTTCAGGATGC+AGG | 0.510990 | 4.2:+35139276 | MS.gene063012:intron |
| CTAGAAAATGTTCCTTGTGT+TGG | 0.513511 | 4.2:+35140235 | MS.gene063012:CDS |
| AGAGCTCTAATTGATGCCTA+TGG | 0.514260 | 4.2:+35133270 | MS.gene063012:CDS |
| AGCCAATGACATAACACCTT+GGG | 0.518658 | 4.2:-35134168 | None:intergenic |
| ACAGTGATGAAACGGAGGAT+TGG | 0.518817 | 4.2:+35134687 | MS.gene063012:CDS |
| GAAGATGTTCGAGGAAACTC+GGG | 0.518970 | 4.2:-35141404 | None:intergenic |
| ACGGAGGATTGGATGTATAG+AGG | 0.522404 | 4.2:+35134698 | MS.gene063012:CDS |
| AAATCCTGAGGAGGGTAATG+AGG | 0.524639 | 4.2:+35141432 | MS.gene063012:CDS |
| TGGAGATATAATCAAGAGAA+TGG | 0.526748 | 4.2:+35140767 | MS.gene063012:CDS |
| CCATCACAAAATATTCAGAC+GGG | 0.528028 | 4.2:-35134817 | None:intergenic |
| AGCACAGAAGTCACATGGAT+TGG | 0.529243 | 4.2:+35134435 | MS.gene063012:CDS |
| TCCAAAAGCTTGAGGCCGCA+GGG | 0.534212 | 4.2:-35139581 | None:intergenic |
| ATTTCATATCAGGAGGTGGC+AGG | 0.534414 | 4.2:+35137416 | MS.gene063012:intron |
| TGAAGAGGAGGAGTTCGATT+GGG | 0.536389 | 4.2:+35133395 | MS.gene063012:CDS |
| GCTGCTATTGACGTTCAAGT+TGG | 0.538506 | 4.2:+35138280 | MS.gene063012:CDS |
| CTCATAGCAGCACAATGTCC+TGG | 0.542263 | 4.2:-35133927 | None:intergenic |
| GGCTAATCAAGCCCCTGCGC+TGG | 0.542720 | 4.2:+35134187 | MS.gene063012:CDS |
| AACAAGTTGTGCATTTGGCA+GGG | 0.544007 | 4.2:-35133955 | None:intergenic |
| AATATCCAACAGTTGGCTGT+TGG | 0.544187 | 4.2:-35134121 | None:intergenic |
| AAATTAGAATATCCAACAGT+TGG | 0.545058 | 4.2:-35134128 | None:intergenic |
| TGCAACTACTTCAGCGTCAA+GGG | 0.545212 | 4.2:+35133518 | MS.gene063012:CDS |
| GAATAACAACAGGCATGGAC+AGG | 0.551052 | 4.2:+35134747 | MS.gene063012:CDS |
| GCAATTCTTTGGCCTGGCGA+AGG | 0.555122 | 4.2:-35133987 | None:intergenic |
| GTTATGCCACTTCCTTCGCC+AGG | 0.555543 | 4.2:+35133975 | MS.gene063012:CDS |
| TAGATTTAGTTACCAGCGCA+GGG | 0.556762 | 4.2:-35134199 | None:intergenic |
| ACAAGTTGTGCATTTGGCAG+GGG | 0.557390 | 4.2:-35133954 | None:intergenic |
| GGTGGCTATATCATCGTACA+AGG | 0.557509 | 4.2:+35140792 | MS.gene063012:CDS |
| AGATACCTTTCCTTTATGCA+AGG | 0.557986 | 4.2:-35140344 | None:intergenic |
| GGCGTTTGTCCACTGTTATG+CGG | 0.558202 | 4.2:-35133840 | None:intergenic |
| TAGCAGGTTCTTAGGAGACA+TGG | 0.558384 | 4.2:+35140747 | MS.gene063012:intron |
| GTGCAACTACTTCAGCGTCA+AGG | 0.559076 | 4.2:+35133517 | MS.gene063012:CDS |
| AGCAGAAGCCCTCTCGCAAG+TGG | 0.560089 | 4.2:+35134492 | MS.gene063012:CDS |
| AGAATCTGGGGTAGAGCATG+TGG | 0.560420 | 4.2:-35134065 | None:intergenic |
| AAAGTTGCTGGCAGAACTGG+TGG | 0.562453 | 4.2:-35133576 | None:intergenic |
| TTCCTAACAGGATTCTTCGA+TGG | 0.563320 | 4.2:-35133660 | None:intergenic |
| CAAGTTGTGCATTTGGCAGG+GGG | 0.563383 | 4.2:-35133953 | None:intergenic |
| AGTAGTTGCACTTGCTGCAA+CGG | 0.563425 | 4.2:-35133505 | None:intergenic |
| AATCAAAAGATGCTTGCTGA+TGG | 0.564765 | 4.2:+35133117 | None:intergenic |
| AATCCTGAGGAGGGTAATGA+GGG | 0.564835 | 4.2:+35141433 | MS.gene063012:CDS |
| GATACCTTTCCTTTATGCAA+GGG | 0.565038 | 4.2:-35140343 | None:intergenic |
| ATTCTACCTAATCCCAATCC+TGG | 0.565745 | 4.2:+35134083 | MS.gene063012:CDS |
| TGGCTTGACACAGAAGGACC+AGG | 0.566253 | 4.2:-35134101 | None:intergenic |
| CTACTATGGTCTACTAGTGT+CGG | 0.567210 | 4.2:-35133429 | None:intergenic |
| GGCTGTTGGCTTGACACAGA+AGG | 0.567803 | 4.2:-35134107 | None:intergenic |
| TCCATCACAAAATATTCAGA+CGG | 0.568109 | 4.2:-35134818 | None:intergenic |
| TCAAGCCAACAGCCAACTGT+TGG | 0.568482 | 4.2:+35134116 | MS.gene063012:CDS |
| GCTGGCCTACAAATTTGGGA+TGG | 0.568482 | 4.2:+35138314 | MS.gene063012:CDS |
| GACGCTGCTGGATCCTGAGA+TGG | 0.569203 | 4.2:-35133879 | None:intergenic |
| CGGGTTAGATGAAATCAGAC+CGG | 0.570016 | 4.2:-35133820 | None:intergenic |
| ATCAAGAGCACTTCGTATTG+GGG | 0.570807 | 4.2:-35138251 | None:intergenic |
| ACGAAGTGCTCTTGATGGAT+GGG | 0.573019 | 4.2:+35138258 | MS.gene063012:CDS |
| GTAGACCATAGTAGAAGTAA+TGG | 0.573238 | 4.2:+35133438 | MS.gene063012:CDS |
| ATTAGTTCACTCATGGCCCA+AGG | 0.574805 | 4.2:+35134152 | MS.gene063012:CDS |
| AAGCAATGATATAACAGAGT+AGG | 0.574823 | 4.2:-35138346 | None:intergenic |
| CATGGATCTCCTCAAGGCCA+TGG | 0.575075 | 4.2:+35138397 | MS.gene063012:CDS |
| CCTTAAAGTAAACCTCATCA+TGG | 0.575288 | 4.2:-35140315 | None:intergenic |
| AGAACAGCTTGTTATAAGGA+TGG | 0.576023 | 4.2:+35141173 | MS.gene063012:CDS |
| TGTTCCTTGTGTTGGTGAAG+TGG | 0.576111 | 4.2:+35140243 | MS.gene063012:CDS |
| GTTTGATCCAAATCTTCTGA+AGG | 0.578645 | 4.2:+35134325 | MS.gene063012:CDS |
| GGAGTTATGCTGGGAGGACG+CGG | 0.578950 | 4.2:-35133630 | None:intergenic |
| CAGCTCTTTCAGTTTCCTGG+GGG | 0.579833 | 4.2:+35134013 | MS.gene063012:CDS |
| TCCGGTCGCTCCACTAACAA+AGG | 0.582967 | 4.2:-35133327 | None:intergenic |
| GCAGGAAAATCCCCTTGCAC+AGG | 0.583936 | 4.2:+35137434 | MS.gene063012:CDS |
| ACAGCTCTTTCAGTTTCCTG+GGG | 0.586349 | 4.2:+35134012 | MS.gene063012:CDS |
| AGACCTTAAACAAAGGATTG+AGG | 0.586455 | 4.2:-35141221 | None:intergenic |
| CCTAGACAGTGCACAACTTG+TGG | 0.586792 | 4.2:+35134389 | MS.gene063012:CDS |
| TCAACACCATGTTCATGCAC+AGG | 0.588454 | 4.2:-35133747 | None:intergenic |
| CTGGCCTACAAATTTGGGAT+GGG | 0.589172 | 4.2:+35138315 | MS.gene063012:CDS |
| GTTGGCAGTTCTTGCTGACG+AGG | 0.590256 | 4.2:+35134619 | MS.gene063012:CDS |
| AAAGTAAACCTCATCATGGT+CGG | 0.590749 | 4.2:-35140311 | None:intergenic |
| TTCCCAAAACCATGGCCTTG+AGG | 0.591486 | 4.2:-35138406 | None:intergenic |
| TTGTACCATGGATCTCCTCA+AGG | 0.591857 | 4.2:+35138391 | MS.gene063012:CDS |
| TTCCAACAAAATCCTGAGGA+GGG | 0.594371 | 4.2:+35141424 | MS.gene063012:CDS |
| CTGAATGCTCCAAAAGCTTG+AGG | 0.595297 | 4.2:-35139589 | None:intergenic |
| ATTGGGGCAAGTCGAGTCCA+AGG | 0.596687 | 4.2:-35138235 | None:intergenic |
| GACGATGTGGCTAGGTGCAG+AGG | 0.597079 | 4.2:+35134526 | MS.gene063012:CDS |
| CCAAAAGCTTGAGGCCGCAG+GGG | 0.597788 | 4.2:-35139580 | None:intergenic |
| GTGAGTGAGACGATGTGGCT+AGG | 0.601495 | 4.2:+35134518 | MS.gene063012:CDS |
| AAGGGTCAGACCTTAAACAA+AGG | 0.602817 | 4.2:-35141228 | None:intergenic |
| AGATTTCACTAAGCTTGGAA+CGG | 0.603067 | 4.2:-35139316 | None:intergenic |
| TTTGTCATTCTTGACGACAA+TGG | 0.604567 | 4.2:+35139634 | MS.gene063012:CDS |
| TAATGGAATAACAACAGGCA+TGG | 0.604751 | 4.2:+35134742 | MS.gene063012:CDS |
| AATAGTACCAGTGTGAGTAA+TGG | 0.608110 | 4.2:+35133705 | MS.gene063012:CDS |
| AGAGCATGTGGGCCAGCTGG+AGG | 0.611285 | 4.2:-35134053 | None:intergenic |
| GGAAATATAGGAGTTATGCT+GGG | 0.611878 | 4.2:-35133639 | None:intergenic |
| AATTAGACCATTACTCACAC+TGG | 0.612003 | 4.2:-35133712 | None:intergenic |
| CTCACAAACCACTTGCGAGA+GGG | 0.612344 | 4.2:-35134500 | None:intergenic |
| CTATATCATCGTACAAGGGA+GGG | 0.614354 | 4.2:+35140797 | MS.gene063012:CDS |
| GGGTTAGATGAAATCAGACC+GGG | 0.617202 | 4.2:-35133819 | None:intergenic |
| ATTGGGATTAGGTAGAATCT+GGG | 0.617573 | 4.2:-35134078 | None:intergenic |
| CTTCCAACAAAATCCTGAGG+AGG | 0.619824 | 4.2:+35141423 | MS.gene063012:CDS |
| AATGCCCTTGCATAAAGGAA+AGG | 0.620306 | 4.2:+35140339 | MS.gene063012:CDS |
| TAGCCAATGACATAACACCT+TGG | 0.621234 | 4.2:-35134169 | None:intergenic |
| CCAATCATTGAATTATGTGG+AGG | 0.624312 | 4.2:+35139523 | MS.gene063012:CDS |
| TGCATTTAGCATGAATAATG+GGG | 0.625810 | 4.2:-35134781 | None:intergenic |
| CATGGCCTTGAGGAGATCCA+TGG | 0.627745 | 4.2:-35138396 | None:intergenic |
| GAACAAATTTCCCAAAACCA+TGG | 0.631785 | 4.2:-35138414 | None:intergenic |
| GCTATATCATCGTACAAGGG+AGG | 0.632238 | 4.2:+35140796 | MS.gene063012:CDS |
| ATGGCAGAATACTGAAGAGG+AGG | 0.632607 | 4.2:+35133383 | MS.gene063012:CDS |
| ACTCACAAACCACTTGCGAG+AGG | 0.632815 | 4.2:-35134501 | None:intergenic |
| GATGACACCATGAACATTGG+TGG | 0.633573 | 4.2:+35140822 | MS.gene063012:CDS |
| AGCTCTTTCAGTTTCCTGGG+GGG | 0.634048 | 4.2:+35134014 | MS.gene063012:CDS |
| AGATGAGCACAGAAGTCACA+TGG | 0.637659 | 4.2:+35134430 | MS.gene063012:CDS |
| GGGCCAGCTGGAGGTAAAGG+TGG | 0.639466 | 4.2:-35134044 | None:intergenic |
| CAGTTGCCTAATCAGCTACC+CGG | 0.639744 | 4.2:+35133801 | MS.gene063012:CDS |
| ATAAGTTTATGACAACATCA+TGG | 0.644139 | 4.2:+35133364 | MS.gene063012:CDS |
| CATCTTGGGACTTGAATCGG+AGG | 0.650361 | 4.2:-35134412 | None:intergenic |
| GCTGATGACACCATGAACAT+TGG | 0.650476 | 4.2:+35140819 | MS.gene063012:CDS |
| TCAATATTAGAATTGAGACC+AGG | 0.653967 | 4.2:-35133546 | None:intergenic |
| GCTGAATGCCGACCATGATG+AGG | 0.659320 | 4.2:+35140303 | MS.gene063012:CDS |
| TGTGTTGCAACTGAAAATAG+GGG | 0.659363 | 4.2:+35141147 | MS.gene063012:CDS |
| ATAATCAAGAGAATGGTTGG+TGG | 0.659430 | 4.2:+35140774 | MS.gene063012:CDS |
| ATCATGGCAGAATACTGAAG+AGG | 0.665757 | 4.2:+35133380 | MS.gene063012:CDS |
| AGATTTAGTTACCAGCGCAG+GGG | 0.672730 | 4.2:-35134198 | None:intergenic |
| TCATCTAACCCGCATAACAG+TGG | 0.680332 | 4.2:+35133831 | MS.gene063012:CDS |
| GAATCTGGGGTAGAGCATGT+GGG | 0.680646 | 4.2:-35134064 | None:intergenic |
| CATCACAAAATATTCAGACG+GGG | 0.686925 | 4.2:-35134816 | None:intergenic |
| TTGGGATTAGGTAGAATCTG+GGG | 0.686989 | 4.2:-35134077 | None:intergenic |
| AAACCCACTTCACCAACACA+AGG | 0.689168 | 4.2:-35140247 | None:intergenic |
| TTGCTGGCAGAACTGGTGGA+CGG | 0.691595 | 4.2:-35133572 | None:intergenic |
| CATCTTCCAACAAAATCCTG+AGG | 0.697941 | 4.2:+35141420 | MS.gene063012:CDS |
| GAGTTAAGCTATCTCAACAA+CGG | 0.702080 | 4.2:+35133228 | MS.gene063012:CDS |
| CAGATGCTCCAAGAGAGACA+GGG | 0.703099 | 4.2:-35140273 | None:intergenic |
| CAAATATTGATGATGATCTG+TGG | 0.704903 | 4.2:+35139476 | MS.gene063012:CDS |
| AATATAGGAGTTATGCTGGG+AGG | 0.735215 | 4.2:-35133636 | None:intergenic |
| GGTTTGTGAGTGAGACGATG+TGG | 0.738502 | 4.2:+35134513 | MS.gene063012:CDS |
| GTGGCTATATCATCGTACAA+GGG | 0.741466 | 4.2:+35140793 | MS.gene063012:CDS |
| ACATTACGGGAAGTCCCCTG+CGG | 0.755485 | 4.2:+35139566 | MS.gene063012:CDS |
| AAGATGTTCGAGGAAACTCG+GGG | 0.765970 | 4.2:-35141403 | None:intergenic |
| TTTGCCAACCGAGACCACTG+AGG | 0.774441 | 4.2:+35134577 | MS.gene063012:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 35133126 | 35141496 | 35133126 | ID=MS.gene063012 |
| chr4.2 | mRNA | 35133126 | 35141496 | 35133126 | ID=MS.gene063012.t1;Parent=MS.gene063012 |
| chr4.2 | exon | 35133126 | 35134208 | 35133126 | ID=MS.gene063012.t1.exon1;Parent=MS.gene063012.t1 |
| chr4.2 | CDS | 35133126 | 35134208 | 35133126 | ID=cds.MS.gene063012.t1;Parent=MS.gene063012.t1 |
| chr4.2 | exon | 35134308 | 35134847 | 35134308 | ID=MS.gene063012.t1.exon2;Parent=MS.gene063012.t1 |
| chr4.2 | CDS | 35134308 | 35134847 | 35134308 | ID=cds.MS.gene063012.t1;Parent=MS.gene063012.t1 |
| chr4.2 | exon | 35137428 | 35137455 | 35137428 | ID=MS.gene063012.t1.exon3;Parent=MS.gene063012.t1 |
| chr4.2 | CDS | 35137428 | 35137455 | 35137428 | ID=cds.MS.gene063012.t1;Parent=MS.gene063012.t1 |
| chr4.2 | exon | 35138218 | 35138438 | 35138218 | ID=MS.gene063012.t1.exon4;Parent=MS.gene063012.t1 |
| chr4.2 | CDS | 35138218 | 35138438 | 35138218 | ID=cds.MS.gene063012.t1;Parent=MS.gene063012.t1 |
| chr4.2 | exon | 35139291 | 35139354 | 35139291 | ID=MS.gene063012.t1.exon5;Parent=MS.gene063012.t1 |
| chr4.2 | CDS | 35139291 | 35139354 | 35139291 | ID=cds.MS.gene063012.t1;Parent=MS.gene063012.t1 |
| chr4.2 | exon | 35139458 | 35139666 | 35139458 | ID=MS.gene063012.t1.exon6;Parent=MS.gene063012.t1 |
| chr4.2 | CDS | 35139458 | 35139666 | 35139458 | ID=cds.MS.gene063012.t1;Parent=MS.gene063012.t1 |
| chr4.2 | exon | 35140208 | 35140360 | 35140208 | ID=MS.gene063012.t1.exon7;Parent=MS.gene063012.t1 |
| chr4.2 | CDS | 35140208 | 35140360 | 35140208 | ID=cds.MS.gene063012.t1;Parent=MS.gene063012.t1 |
| chr4.2 | exon | 35140753 | 35140853 | 35140753 | ID=MS.gene063012.t1.exon8;Parent=MS.gene063012.t1 |
| chr4.2 | CDS | 35140753 | 35140853 | 35140753 | ID=cds.MS.gene063012.t1;Parent=MS.gene063012.t1 |
| chr4.2 | exon | 35141113 | 35141239 | 35141113 | ID=MS.gene063012.t1.exon9;Parent=MS.gene063012.t1 |
| chr4.2 | CDS | 35141113 | 35141239 | 35141113 | ID=cds.MS.gene063012.t1;Parent=MS.gene063012.t1 |
| chr4.2 | exon | 35141383 | 35141496 | 35141383 | ID=MS.gene063012.t1.exon10;Parent=MS.gene063012.t1 |
| chr4.2 | CDS | 35141383 | 35141496 | 35141383 | ID=cds.MS.gene063012.t1;Parent=MS.gene063012.t1 |
| Gene Sequence |
| Protein sequence |