AlfalfaGEDB | MS.gene063050

M. sativa cultivar XinJiangDaYe / MS.gene063050

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24 PF06507.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063050.t1	XP_024640663.1	72.5	364	51	5	46	371	9	361	7.10E-139	503.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063050.t1	Q84WU6	33.6	387	151	10	76	363	20	399	1.3e-45	185.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063050.t1	G7K951	48.0	419	111	9	72	392	16	425	2.7e-87	332.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene063050.t1	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063050.t1	MTR_5g061220	47.971	419	111	9	72	392	16	425	1.56e-112	339
MS.gene063050.t1	MTR_5g062970	75.829	211	18	2	46	224	9	218	4.11e-106	312
MS.gene063050.t1	MTR_1g058210	48.082	391	119	13	75	392	12	391	2.14e-97	298
MS.gene063050.t1	MTR_5g060630	43.172	454	123	12	72	391	9	461	4.94e-89	278
MS.gene063050.t1	MTR_5g460740	43.172	454	123	12	72	391	9	461	4.94e-89	278
MS.gene063050.t1	MTR_5g061890	48.034	356	113	13	75	366	12	359	1.36e-84	263
MS.gene063050.t1	MTR_5g060780	46.113	373	128	13	75	382	12	376	1.73e-84	263
MS.gene063050.t1	MTR_5g460920	46.113	373	128	13	75	382	12	376	1.27e-83	261
MS.gene063050.t1	MTR_2g024430	44.872	390	130	17	75	390	20	398	1.35e-82	261
MS.gene063050.t1	MTR_5g040880	40.150	401	151	15	72	390	8	401	1.44e-73	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063050.t1	AT4G30080	30.808	396	160	14	75	363	19	407	1.55e-43	160
MS.gene063050.t1	AT2G46530	29.023	348	170	13	74	356	20	355	7.89e-34	133
MS.gene063050.t1	AT2G46530	29.023	348	170	13	74	356	41	376	8.05e-34	133
MS.gene063050.t1	AT3G61830	28.994	338	169	12	74	348	24	353	7.08e-33	130
MS.gene063050.t1	AT5G62000	27.110	391	202	14	75	392	61	441	1.75e-29	121
MS.gene063050.t1	AT5G62000	27.110	391	202	14	75	392	61	441	1.75e-29	121
MS.gene063050.t1	AT5G62000	27.110	391	202	14	75	392	61	441	1.75e-29	121
MS.gene063050.t1	AT5G62000	27.110	391	202	14	75	392	61	441	1.75e-29	121
MS.gene063050.t1	AT5G62000	27.110	391	202	14	75	392	61	441	2.12e-29	120
MS.gene063050.t1	AT1G59750	26.216	370	194	13	75	375	22	381	4.23e-29	119

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Find 107 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGGCAGAAATGTGC+TGG	0.503047	5.3:-49542819	MS.gene063050:CDS
AAACTGTGTCAATCCTTGGC+AGG	0.512278	5.3:-49542991	MS.gene063050:CDS
AAAGTTTACTACTTCCCACA+AGG	0.649931	5.3:-49542765	MS.gene063050:CDS
AAATCAAACCAATTCGCTCT+CGG	0.544399	5.3:+49542131	None:intergenic
AACAACAAGAAACTCGTCAC+TGG	0.545833	5.3:-49542295	MS.gene063050:intron
AAGGAGGATAACGATGAAGA+AGG	0.529163	5.3:+49542706	None:intergenic
AAGGGATCATAGAAATGAAG+GGG	0.638177	5.3:+49540445	None:intergenic
AAGGGTGATGATTGTGTGAG+CGG	0.624730	5.3:+49542725	None:intergenic
AAGTCCATCCCCTACTGAAA+AGG	0.489646	5.3:+49542326	None:intergenic
AAGTGGGAAGGTAACAGAGA+AGG	0.628618	5.3:-49542213	MS.gene063050:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTACAAAAGAATTGCCAG+AGG	-	chr5.3:49542664-49542683	MS.gene063050:CDS	30.0%
ATAATACGATCAGATTGGAA+AGG	-	chr5.3:49542552-49542571	MS.gene063050:CDS	30.0%
ATTACAAAAGAATTGCCAGA+GGG	-	chr5.3:49542665-49542684	MS.gene063050:CDS	30.0%
CATTTCAGTATACAGAAGAA+AGG	+	chr5.3:49542440-49542459	None:intergenic	30.0%
CTATTTCAAATGACTGATGT+TGG	-	chr5.3:49540897-49540916	MS.gene063050:intron	30.0%
GAAGATTCTTCTTTCTTGAA+AGG	+	chr5.3:49541947-49541966	None:intergenic	30.0%
GAGAGAATAGAATAGAAGAA+AGG	-	chr5.3:49542784-49542803	MS.gene063050:CDS	30.0%
TAATACGATCAGATTGGAAA+GGG	-	chr5.3:49542553-49542572	MS.gene063050:CDS	30.0%
TATCACAGTTCAACAATGTT+TGG	+	chr5.3:49543582-49543601	None:intergenic	30.0%
TGCAAATAATACGATCAGAT+TGG	-	chr5.3:49542547-49542566	MS.gene063050:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	49540389	49543615	49540389	ID=MS.gene063050
chr5.3	mRNA	49540389	49543615	49540389	ID=MS.gene063050.t1;Parent=MS.gene063050
chr5.3	exon	49543601	49543615	49543601	ID=MS.gene063050.t1.exon1;Parent=MS.gene063050.t1
chr5.3	CDS	49543601	49543615	49543601	ID=cds.MS.gene063050.t1;Parent=MS.gene063050.t1
chr5.3	exon	49542551	49543048	49542551	ID=MS.gene063050.t1.exon2;Parent=MS.gene063050.t1
chr5.3	CDS	49542551	49543048	49542551	ID=cds.MS.gene063050.t1;Parent=MS.gene063050.t1
chr5.3	exon	49542296	49542455	49542296	ID=MS.gene063050.t1.exon3;Parent=MS.gene063050.t1
chr5.3	CDS	49542296	49542455	49542296	ID=cds.MS.gene063050.t1;Parent=MS.gene063050.t1
chr5.3	exon	49541947	49542257	49541947	ID=MS.gene063050.t1.exon4;Parent=MS.gene063050.t1
chr5.3	CDS	49541947	49542257	49541947	ID=cds.MS.gene063050.t1;Parent=MS.gene063050.t1
chr5.3	exon	49540389	49540583	49540389	ID=MS.gene063050.t1.exon5;Parent=MS.gene063050.t1
chr5.3	CDS	49540389	49540583	49540389	ID=cds.MS.gene063050.t1;Parent=MS.gene063050.t1

Gene Sequence

>MS.gene063050

ATGTCTTCTCCTTGGGTTTGTATTAGTTAATAAAATCTGCTTTGCTTTTCCAAAATAACTTAGGATTTCTTAATTACATTGTTATGAGTCCTACCATACCAAATTAAGTTCAATGACTTTAGCAACTTTATACTCAAATGATGCTATTCTTTAAGAAGTTGAAATAGTTCTAAGAGTTTACCTCAGCCAGAATTCCGAATTTATGTGACTGCCTAGTTTGCATTAAGAATTGATTCCAAGTTGAAATGGTTCCCTGTGCCTTAAGAATTCATCAGATAATGTGTATGTAAGCAGATTACATTTTACAATCAATTGTTTATGTTAGACTTTTTTTATATGTCACTGCCTACGTAACTTGCTCCAATAGTGATATTCTCTAAGAAACAGTTATGAAGTTTAAAAACTTTCTAATTATTTCTCGTTGTAAATATTCTTAATGCTAAGTATGATCTTGATTTTGAATTGCATGTTAATAATTATTAATAAACATTTGATGTGTAAATACATACTATTTCAAATGACTGATGTTGGATTCTTACCATTTTTTTTTATATCTTTTGATCATAGGTTAACCGGGATGAACCTGAAATCTCGAAGATTCCAAACTGTGTCAATCCTTGGCAGGTTGAACTTATTCACCACAAAGCTGAACTGTATATACAATCCCCCCCAAATAAAAATCCTAGACGTGCTGAGAGCTCTGTCCTGTTAAGTGATACCGGGGAGCTACATTCCAAAGCATTCCCCACAAAATCTATATTTACCATCCCCACCAAAATCTGGCAGAAATGTGCTGGAGCCTCAGTCAAGATTCCGAAGCTACATTCTAAAGTTTACTACTTCCCACAAGGTCACTTAGAACATGTCTCCGCTCACACAATCATCACCCTTCTTCATCGTTATCCTCCTTCCATTTCCGGCATCATTTCAGTCGTTAATCTCCTTGTTGATCCTCACACAGATGTAGTATTTTCCAAACTTCTCCTCACTCCCGTAATGGATGGCCATGGCCATGAACAAGAAGCTCCTCCAGAGGTTCCTGCCGAAGACGAGGATGGCTACAATGTTGTTTCCTTTGCAAGATTCTCACACAATCTGATTGCAATAGTGGCTATGGATTCATTGTATCTCTCCCTTGCGTTGACTTGATCTTGCCGAAGCTTAACTTGGACGATTCAATGCCATCTCAGACACTCTCCGTCACTGACATTCTTCAAGGCCGAGTCTGGCAGTACACGCACATCTACCGCGGTAAATCCAAGAGACACCTTTTCAGTAGGGGATGGACTTCATTTGTCAACAACAAGAAACTCGTCACTGGTGATTCAGTTGTTTTCGTTAAAAACTCAGCTGGGAAGATATTCGTTGGAATATGCCGAAAAGTGGGAAGGTAACAGAGAAGGCGGTTATGGATGCGGTGGAATTGGCGGTGAAAAACATGGCATTTGAAGTTTTGTATTATCCGAGAGCGAATTGGTTTGATTTTGTAGTGGATGCAAAAGTTGTTGATGATGCCATGAAGATTAGTTGGACATCTGGAATTCAAGTCAAGCTTCCTTTCAAGAAAGAAGAATCTTCAAATTCAAAGATGAGATTGTTTCAGCCTCAGGGGACAATCTCAGATGTTTCTAATGCTCCTTCTAATGTCCCTAATTGGCGCATGCTTCAGGTACATACACTTTCTTCTTTTGGTGATATTATATTTCAAGTGCATAATGTTATCTAGTACTACTTTTGTTTGAAAATAAATATTACAGTTCAAATTTATAGTTGGTACAAATGTACAATGTTGAATCCAGAATTCAATGATTTCTTTGATAAGTATTAGTGTTGAAGTTAATGCATGATTGATCACCAAGAAGCAACACAACCTCCTGATCACAAAGAATTTTGCAGCATTGAGGTCCCAAAAAACATAAACAGCGTTTTCACCATCGAACCTTGTTTCCCGAAAGTACCATGGTTTTAGCTCAACCTTGCAGTTATATTTAGTTTCTCTTTTTGGGATTTCCACCGATAAACCATGAAGCAACGAGAGTTATCATCTACCTTTCTTCTGTATACTGAAATGTAAACCGTTCTACCTGAATTTGTCACTGCTCGACTTGAGTTTTGCATTGTTTTTGATGCGTTTATTAGAAGAAAAAAAGTGAGATGATGCAAATAATACGATCAGATTGGAAAGGGAGGGAATTTAACATGAATTTTAGGAGATCCTCGTGGCAAGCTGTATGAATGTTCTGCCAGAGGTCTTTCCAAACTGGCAGTGACTGAGAATTACAAAAGAATTGCCAGAGGGTCTATACCATTTTAAATTTTTATTTTTATATTTTGGAATGTAGCTTTTAATTCTGAAGTTGAAACTAGAAAAACTTTGTTTGGATCCAAGGTATATGAGAGAATAGAATAGAAGAAAGGGAAGTGTTTTTGGGTTCTTTTATAACGGGGAAGCTTCAGGCCAAGTATTATATAATAAAATACATTTTCTTGTTTTTATTGCAACATCTTATAACCATCTTTAATAGTGCACTTAAATTAGAGTTTCTTAGCTTGGTGGAGAAATTAAAAACAACATCTTCGAAATGGTTGAAAACAGAATCAAAAGATTTTAACTATCAAATTACTCGATGGTGGAACAATCCAGTGAATGATTGGTGGGATCAGGGACGGCAAGGTATCGTTCTTGTTGGGATGCTAGAATCGTATATAGCTTCTTTATTCCTTTGTTATGAGTCCTACCATATCACATAAGTTAATGAATTTTGCAACTTTATACTCAAACGATGCAATTCTTTATGAAATTGTTTATATCAGACCCGTTTTTATCATTGACCGCCTAAATAACTTTATCCAATAGTGATATTCTCTAAGAACTTTCTTAAAAATTATTGTTGTAAATACTCTTAATGCTTAATAGGATCTTGATTTTGACTCGCATGTTATTAATTGATAATAAACATTTGATATGTAAATACATACTATTTCGAATGACTGATGTGGATTCTCGCCATATTTTTATCTCTTTATTATAGGTTAAGTGGGATGAACCTGAAATCTCGCAGAATCCAAACGGTGTCAATCCTTGGCAGTTACTGTATCCACCATTCCCCCCAACAAAAAGGCCTAGACTTGCCCAGAGTTCTGCAGACCCCTTCATTTCTATGATCCCTTCAACACCGGGATCCTTGAACCAAACATTGTTGAACTGTGATACTTTTCCTGCATGA

Protein sequence

>MS.gene063050.t1

MSSPWVNRDEPEISKIPNCVNPWQVELIHHKAELYIQSPPNKNPRRAESSVLLSDTGELHSKAFPTKSIFTIPTKIWQKCAGASVKIPKLHSKVYYFPQGHLEHVSAHTIITLLHRYPPSISGIISVVNLLVDPHTDVVFSKLLLTPVMDGHGHEQEAPPEVPAEDEDGYNLNLDDSMPSQTLSVTDILQGRVWQYTHIYRGKSKRHLFSRGWTSFVNNKKLVTDIRWNMPKSGKVTEKAVMDAVELAVKNMAFEVLYYPRANWFDFVVDAKVVDDAMKISWTSGIQVKLPFKKEESSNSKMRLFQPQGTISDVSNAPSNVPNWRMLQVKWDEPEISQNPNGVNPWQLLYPPFPPTKRPRLAQSSADPFISMIPSTPGSLNQTLLNCDTFPA