AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063050.t1 MTR_5g061220 47.971 419 111 9 72 392 16 425 1.56e-112 339
MS.gene063050.t1 MTR_5g062970 75.829 211 18 2 46 224 9 218 4.11e-106 312
MS.gene063050.t1 MTR_1g058210 48.082 391 119 13 75 392 12 391 2.14e-97 298
MS.gene063050.t1 MTR_5g060630 43.172 454 123 12 72 391 9 461 4.94e-89 278
MS.gene063050.t1 MTR_5g460740 43.172 454 123 12 72 391 9 461 4.94e-89 278
MS.gene063050.t1 MTR_5g061890 48.034 356 113 13 75 366 12 359 1.36e-84 263
MS.gene063050.t1 MTR_5g060780 46.113 373 128 13 75 382 12 376 1.73e-84 263
MS.gene063050.t1 MTR_5g460920 46.113 373 128 13 75 382 12 376 1.27e-83 261
MS.gene063050.t1 MTR_2g024430 44.872 390 130 17 75 390 20 398 1.35e-82 261
MS.gene063050.t1 MTR_5g040880 40.150 401 151 15 72 390 8 401 1.44e-73 238
MS.gene063050.t1 MTR_5g082140 39.846 389 156 13 72 390 9 389 3.05e-72 233
MS.gene063050.t1 MTR_5g062960 75.163 153 29 2 242 392 1 146 1.63e-71 223
MS.gene063050.t1 MTR_2g006380 41.579 380 138 18 75 392 20 377 4.59e-65 214
MS.gene063050.t1 MTR_5g040740 44.089 313 109 10 75 330 12 315 1.55e-64 211
MS.gene063050.t1 MTR_2g006270 39.433 388 142 16 75 392 13 377 5.60e-60 201
MS.gene063050.t1 MTR_3g073420 33.023 430 166 15 75 392 19 438 1.93e-54 189
MS.gene063050.t1 MTR_1g094960 32.274 409 161 15 71 373 15 413 3.41e-50 178
MS.gene063050.t1 MTR_1g064430 30.233 430 178 14 75 387 40 464 7.24e-43 159
MS.gene063050.t1 MTR_1g064430 30.233 430 178 14 75 387 27 451 7.50e-43 159
MS.gene063050.t1 MTR_5g060770 39.623 318 117 12 124 392 10 301 2.16e-41 149
MS.gene063050.t1 MTR_8g100050 27.913 369 196 10 75 379 59 421 4.07e-30 122
MS.gene063050.t1 MTR_8g100050 27.913 369 196 10 75 379 59 421 6.88e-30 122
MS.gene063050.t1 MTR_2g005240 29.912 341 162 14 75 348 23 353 2.81e-29 120
MS.gene063050.t1 MTR_5g460910 36.455 299 131 11 124 392 27 296 9.24e-29 115
MS.gene063050.t1 MTR_7g062540 26.316 361 184 13 75 361 14 366 1.39e-28 118
MS.gene063050.t1 MTR_2g094570 37.079 178 82 5 75 223 67 243 5.87e-28 116
MS.gene063050.t1 MTR_2g094570 40.845 142 67 4 235 363 318 455 2.66e-21 96.7
MS.gene063050.t1 MTR_2g094570 36.872 179 83 5 75 224 11 188 6.47e-28 116
MS.gene063050.t1 MTR_2g094570 40.845 142 67 4 235 363 262 399 2.82e-21 96.3
MS.gene063050.t1 MTR_2g094570 36.872 179 83 5 75 224 11 188 6.60e-28 115
MS.gene063050.t1 MTR_2g094570 40.845 142 67 4 235 363 262 399 2.62e-21 96.3
MS.gene063050.t1 MTR_7g101275 26.129 310 164 8 85 334 2 306 1.66e-27 112
MS.gene063050.t1 MTR_4g021580 26.462 359 185 12 75 360 19 371 1.79e-27 114
MS.gene063050.t1 MTR_4g021580 26.462 359 185 12 75 360 19 371 1.93e-27 114
MS.gene063050.t1 MTR_0041s0120 25.466 322 163 7 85 334 2 318 9.07e-27 110
MS.gene063050.t1 MTR_2g093740 26.149 348 177 12 75 348 56 397 8.89e-26 109
MS.gene063050.t1 MTR_4g124900 28.655 342 174 12 71 348 19 354 1.06e-25 109
MS.gene063050.t1 MTR_2g093740 26.149 348 177 12 75 348 56 397 1.06e-25 109
MS.gene063050.t1 MTR_2g093740 26.149 348 177 12 75 348 56 397 1.24e-25 109
MS.gene063050.t1 MTR_4g124900 28.655 342 174 12 71 348 19 354 1.36e-25 109
MS.gene063050.t1 MTR_2g043250 28.065 367 186 14 46 348 2 354 3.63e-25 108
MS.gene063050.t1 MTR_2g018690 26.997 363 184 15 72 359 20 376 1.40e-24 106
MS.gene063050.t1 MTR_8g079492 27.072 362 184 14 72 359 20 375 2.19e-24 105
MS.gene063050.t1 MTR_8g079492 27.072 362 184 14 72 359 20 375 2.19e-24 105
MS.gene063050.t1 MTR_8g027440 27.401 354 184 13 75 365 29 372 4.21e-24 104
MS.gene063050.t1 MTR_2g093740 24.931 361 178 12 75 348 56 410 1.05e-23 103
MS.gene063050.t1 MTR_3g064050 25.278 360 190 11 74 360 25 378 2.69e-23 102
MS.gene063050.t1 MTR_5g076270 25.833 360 188 13 74 360 23 376 7.23e-23 101
MS.gene063050.t1 MTR_4g058930 34.807 181 84 6 75 224 12 189 7.33e-23 100
MS.gene063050.t1 MTR_4g058930 43.750 144 62 6 233 361 265 404 2.17e-22 99.8
MS.gene063050.t1 MTR_4g058930 34.807 181 84 6 75 224 12 189 8.43e-23 100
MS.gene063050.t1 MTR_4g058930 43.750 144 62 6 233 361 265 404 1.90e-22 99.8
MS.gene063050.t1 MTR_7g101280 34.911 169 91 5 218 374 280 441 5.18e-18 86.3
MS.gene063050.t1 MTR_0041s0110 34.911 169 91 5 218 374 280 441 5.18e-18 86.3
MS.gene063050.t1 MTR_2g093740 28.502 207 112 8 172 348 67 267 1.62e-15 78.6
MS.gene063050.t1 MTR_2g093740 28.502 207 112 8 172 348 67 267 1.72e-15 78.6
MS.gene063050.t1 MTR_2g093740 29.000 200 106 8 179 348 217 410 1.83e-15 78.6
MS.gene063050.t1 MTR_2g093740 29.000 200 106 8 179 348 217 410 1.99e-15 78.6
MS.gene063050.t1 MTR_2g093740 29.000 200 106 8 179 348 87 280 2.16e-15 78.6
MS.gene063050.t1 MTR_2g093740 29.000 200 106 8 179 348 87 280 2.55e-15 78.2
MS.gene063050.t1 MTR_8g079492 29.956 227 114 11 172 359 73 293 8.56e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063050.t1 AT4G30080 30.808 396 160 14 75 363 19 407 1.55e-43 160
MS.gene063050.t1 AT2G46530 29.023 348 170 13 74 356 20 355 7.89e-34 133
MS.gene063050.t1 AT2G46530 29.023 348 170 13 74 356 41 376 8.05e-34 133
MS.gene063050.t1 AT3G61830 28.994 338 169 12 74 348 24 353 7.08e-33 130
MS.gene063050.t1 AT5G62000 27.110 391 202 14 75 392 61 441 1.75e-29 121
MS.gene063050.t1 AT5G62000 27.110 391 202 14 75 392 61 441 1.75e-29 121
MS.gene063050.t1 AT5G62000 27.110 391 202 14 75 392 61 441 1.75e-29 121
MS.gene063050.t1 AT5G62000 27.110 391 202 14 75 392 61 441 1.75e-29 121
MS.gene063050.t1 AT5G62000 27.110 391 202 14 75 392 61 441 2.12e-29 120
MS.gene063050.t1 AT1G59750 26.216 370 194 13 75 375 22 381 4.23e-29 119
MS.gene063050.t1 AT1G59750 26.216 370 194 13 75 375 22 381 4.23e-29 119
MS.gene063050.t1 AT1G59750 26.216 370 194 13 75 375 22 381 4.63e-29 119
MS.gene063050.t1 AT1G59750 26.216 370 194 13 75 375 22 381 5.06e-29 119
MS.gene063050.t1 AT4G23980 26.923 338 175 10 75 348 12 341 1.16e-28 118
MS.gene063050.t1 AT4G23980 26.923 338 175 10 75 348 12 341 1.16e-28 118
MS.gene063050.t1 AT1G77850 40.000 185 68 6 76 223 20 198 6.44e-28 115
MS.gene063050.t1 AT1G77850 41.429 140 68 3 234 363 264 399 2.36e-24 105
MS.gene063050.t1 AT1G77850 40.000 185 68 6 76 223 20 198 7.74e-28 115
MS.gene063050.t1 AT1G77850 41.135 141 69 3 233 363 263 399 2.68e-24 105
MS.gene063050.t1 AT1G34390 27.795 331 174 12 75 348 27 349 1.03e-25 109
MS.gene063050.t1 AT1G35540 27.027 333 176 13 75 348 27 351 1.11e-25 109
MS.gene063050.t1 AT2G33860 27.368 380 183 16 72 370 51 418 3.76e-25 107
MS.gene063050.t1 AT1G35520 27.928 333 173 12 75 348 27 351 7.70e-25 106
MS.gene063050.t1 AT1G30330 27.123 365 177 16 74 359 24 378 9.99e-25 107
MS.gene063050.t1 AT1G30330 27.123 365 177 16 74 359 24 378 9.99e-25 107
MS.gene063050.t1 AT1G30330 27.123 365 177 16 74 359 22 376 1.08e-24 107
MS.gene063050.t1 AT1G35240 27.027 333 176 12 75 348 27 351 4.60e-24 104
MS.gene063050.t1 AT5G60450 25.562 356 181 12 68 348 34 380 6.60e-24 104
MS.gene063050.t1 AT5G37020 26.685 371 189 16 74 368 21 384 6.65e-24 104
MS.gene063050.t1 AT5G20730 28.022 364 180 17 72 362 21 375 7.55e-24 104
MS.gene063050.t1 AT1G19850 27.446 368 193 13 50 351 31 390 8.36e-24 104
MS.gene063050.t1 AT5G37020 26.685 371 189 16 74 368 21 384 8.85e-24 103
MS.gene063050.t1 AT1G19850 27.446 368 193 13 50 351 20 379 9.63e-24 103
MS.gene063050.t1 AT5G60450 25.568 352 178 12 72 348 62 404 1.11e-23 103
MS.gene063050.t1 AT1G34310 27.327 333 175 12 75 348 27 351 1.56e-23 102
MS.gene063050.t1 AT2G28350 34.375 192 78 7 75 224 10 195 5.23e-23 101
MS.gene063050.t1 AT2G28350 42.636 129 58 4 253 369 286 410 2.09e-18 87.8
MS.gene063050.t1 AT2G28350 34.375 192 78 7 75 224 10 195 5.39e-23 101
MS.gene063050.t1 AT2G28350 42.636 129 58 4 253 369 286 410 2.02e-18 87.8
MS.gene063050.t1 AT1G34410 26.727 333 177 12 75 348 27 351 1.04e-22 100
MS.gene063050.t1 AT1G19220 26.462 359 188 14 72 360 20 372 4.89e-22 99.0
MS.gene063050.t1 AT2G46530 29.811 265 125 12 131 356 26 268 8.93e-22 97.4
MS.gene063050.t1 AT1G34170 27.164 335 175 14 75 348 25 351 4.27e-21 95.5
MS.gene063050.t1 AT3G61830 28.125 288 142 11 118 348 23 302 4.59e-21 95.5
MS.gene063050.t1 AT2G33860 29.461 241 118 11 172 370 31 261 1.47e-16 81.6
MS.gene063050.t1 AT5G37020 27.826 230 119 11 179 368 67 289 8.42e-14 73.6

Find 107 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTATCCTCCTTCCATTTC+CGG 0.160827 5.3:-49542696 MS.gene063050:CDS
TTTGGAATCTTCGAGATTTC+AGG 0.221871 5.3:+49543011 None:intergenic
AGCACATTTCTGCCAGATTT+TGG 0.234127 5.3:+49542821 None:intergenic
TTTGGATTCTGCGAGATTTC+AGG 0.242925 5.3:+49540546 None:intergenic
CCCTAATTGGCGCATGCTTC+AGG 0.281500 5.3:-49541946 MS.gene063050:intron
CTGGAGGAGCTTCTTGTTCA+TGG 0.301419 5.3:+49542583 None:intergenic
CTCCTTCTAATGTCCCTAAT+TGG 0.322348 5.3:-49541959 MS.gene063050:CDS
TCTAAGCATGTCTTCTCCTT+GGG 0.344156 5.3:-49543600 None:intergenic
ATCTAAGCATGTCTTCTCCT+TGG 0.347203 5.3:-49543601 None:intergenic
ACCTGAAGCATGCGCCAATT+AGG 0.352249 5.3:+49541945 None:intergenic
TGCCAAGGATTGACACCGTT+TGG 0.352509 5.3:+49540528 None:intergenic
TGCCAAGGATTGACACAGTT+TGG 0.353376 5.3:+49542993 None:intergenic
GGTAACAGAGAAGGCGGTTA+TGG 0.361245 5.3:-49542204 MS.gene063050:CDS
GGTTATGGATGCGGTGGAAT+TGG 0.365128 5.3:-49542189 MS.gene063050:CDS
TATCACAGTTCAACAATGTT+TGG 0.375245 5.3:+49540403 None:intergenic
CCTGAAGCATGCGCCAATTA+GGG 0.377642 5.3:+49541946 None:intergenic
TCGTCTTCGGCAGGAACCTC+TGG 0.379847 5.3:+49542564 None:intergenic
TTCTATGATCCCTTCAACAC+CGG 0.386180 5.3:-49540436 MS.gene063050:CDS
GCTCCCCGGTATCACTTAAC+AGG 0.396579 5.3:+49542889 None:intergenic
GACTGAAATGATGCCGGAAA+TGG 0.400752 5.3:+49542683 None:intergenic
TACGGGAGTGAGGAGAAGTT+TGG 0.402654 5.3:+49542620 None:intergenic
ACATTCTTCAAGGCCGAGTC+TGG 0.404207 5.3:-49542387 MS.gene063050:CDS
GTATATACAGTTCAGCTTTG+TGG 0.420575 5.3:+49542955 None:intergenic
ATGGCCATGGCCATCCATTA+CGG 0.421249 5.3:+49542602 None:intergenic
ATGAAGATTAGTTGGACATC+TGG 0.423644 5.3:-49542077 MS.gene063050:CDS
CGCCAATTAGGGACATTAGA+AGG 0.425529 5.3:+49541957 None:intergenic
TGAAGGGGTCTGCAGAACTC+TGG 0.427475 5.3:+49540460 None:intergenic
GTTCAACAATGTTTGGTTCA+AGG 0.427735 5.3:+49540410 None:intergenic
TTACCATCCCCACCAAAATC+TGG 0.428187 5.3:-49542833 MS.gene063050:CDS
TCTCTTTATTATAGGTTAAG+TGG 0.429394 5.3:-49540575 MS.gene063050:intron
GATGAGATTGTTTCAGCCTC+AGG 0.431757 5.3:-49542006 MS.gene063050:CDS
AGATGTCCAACTAATCTTCA+TGG 0.435291 5.3:+49542079 None:intergenic
TGGCCATGGCCATCCATTAC+GGG 0.435430 5.3:+49542603 None:intergenic
TCCGTCACTGACATTCTTCA+AGG 0.445118 5.3:-49542397 MS.gene063050:CDS
GATCTTGCCGAAGCTTAACT+TGG 0.446257 5.3:-49542446 MS.gene063050:intron
TTCAAGGATCCCGGTGTTGA+AGG 0.457351 5.3:+49540426 None:intergenic
ATCCAAACGGTGTCAATCCT+TGG 0.459337 5.3:-49540530 MS.gene063050:CDS
TGTATTATCCGAGAGCGAAT+TGG 0.460538 5.3:-49542139 MS.gene063050:CDS
ATGATGCCATGAAGATTAGT+TGG 0.464606 5.3:-49542085 MS.gene063050:CDS
TCTGTCCTGTTAAGTGATAC+CGG 0.467467 5.3:-49542894 MS.gene063050:CDS
CTCTTTATTATAGGTTAAGT+GGG 0.469153 5.3:-49540574 MS.gene063050:intron
GAAGATTCTTCTTTCTTGAA+AGG 0.471685 5.3:+49542038 None:intergenic
TGAAGGGATCATAGAAATGA+AGG 0.476392 5.3:+49540443 None:intergenic
ACTTCTCCTCACTCCCGTAA+TGG 0.478418 5.3:-49542616 MS.gene063050:CDS
CCTACTGAAAAGGTGTCTCT+TGG 0.480185 5.3:+49542336 None:intergenic
ATTGTAGCCATCCTCGTCTT+CGG 0.480424 5.3:+49542551 None:intergenic
TAAACTTTAGAATGTAGCTT+CGG 0.481122 5.3:+49542780 None:intergenic
AAGTCCATCCCCTACTGAAA+AGG 0.489646 5.3:+49542326 None:intergenic
TTCCAAACTGTGTCAATCCT+TGG 0.497383 5.3:-49542995 MS.gene063050:CDS
GAAGGGGTCTGCAGAACTCT+GGG 0.499633 5.3:+49540461 None:intergenic
AAAATCTGGCAGAAATGTGC+TGG 0.503047 5.3:-49542819 MS.gene063050:CDS
CGTTGGAATATGCCGAAAAG+TGG 0.511138 5.3:-49542230 MS.gene063050:CDS
CTGTCCTGTTAAGTGATACC+GGG 0.511775 5.3:-49542893 MS.gene063050:CDS
AAACTGTGTCAATCCTTGGC+AGG 0.512278 5.3:-49542991 MS.gene063050:CDS
TAGCCATCCTCGTCTTCGGC+AGG 0.513990 5.3:+49542555 None:intergenic
AGGAGGATAACGATGAAGAA+GGG 0.521368 5.3:+49542707 None:intergenic
GCAGAACTCTGGGCAAGTCT+AGG 0.524412 5.3:+49540471 None:intergenic
CTGGCTCCCTGCATTCATGC+AGG 0.528173 5.3:+49540375 None:intergenic
AAGGAGGATAACGATGAAGA+AGG 0.529163 5.3:+49542706 None:intergenic
AATGTTTGGTTCAAGGATCC+CGG 0.529501 5.3:+49540417 None:intergenic
AGAGAAGGCGGTTATGGATG+CGG 0.535241 5.3:-49542198 MS.gene063050:CDS
ATGAGATTGTTTCAGCCTCA+GGG 0.536866 5.3:-49542005 MS.gene063050:CDS
GAGCTTCTTGTTCATGGCCA+TGG 0.538260 5.3:+49542589 None:intergenic
AAATCAAACCAATTCGCTCT+CGG 0.544399 5.3:+49542131 None:intergenic
AACAACAAGAAACTCGTCAC+TGG 0.545833 5.3:-49542295 MS.gene063050:intron
TATGGATGCGGTGGAATTGG+CGG 0.548189 5.3:-49542186 MS.gene063050:CDS
TCAAGGATCCCGGTGTTGAA+GGG 0.549494 5.3:+49540427 None:intergenic
ACAGAGCTCTCAGCACGTCT+AGG 0.552883 5.3:+49542912 None:intergenic
TCAGCTGGGAAGATATTCGT+TGG 0.559165 5.3:-49542247 MS.gene063050:intron
CTCCTCACTCCCGTAATGGA+TGG 0.560507 5.3:-49542612 MS.gene063050:CDS
GAAATCTCGCAGAATCCAAA+CGG 0.564728 5.3:-49540543 MS.gene063050:CDS
TCGAGATTTCAGGTTCATCC+CGG 0.566246 5.3:+49543021 None:intergenic
TGCTTTGGAATGTAGCTCCC+CGG 0.567610 5.3:+49542875 None:intergenic
TCTATGATCCCTTCAACACC+GGG 0.573032 5.3:-49540435 MS.gene063050:CDS
CATGTTCTAAGTGACCTTGT+GGG 0.576431 5.3:+49542751 None:intergenic
GAAGGGATCATAGAAATGAA+GGG 0.578510 5.3:+49540444 None:intergenic
ACATGTTCTAAGTGACCTTG+TGG 0.589249 5.3:+49542750 None:intergenic
TGTGCGTGTACTGCCAGACT+CGG 0.602597 5.3:+49542374 None:intergenic
TGAATAAGTTCAACCTGCCA+AGG 0.607758 5.3:+49542978 None:intergenic
ATTAACGACTGAAATGATGC+CGG 0.608025 5.3:+49542677 None:intergenic
GGCCATCCATTACGGGAGTG+AGG 0.608707 5.3:+49542610 None:intergenic
TCTTCGGCAGGAACCTCTGG+AGG 0.611963 5.3:+49542567 None:intergenic
AGAGGTTCCTGCCGAAGACG+AGG 0.616143 5.3:-49542562 MS.gene063050:CDS
GCCTTGAAGAATGTCAGTGA+CGG 0.617086 5.3:+49542396 None:intergenic
AAGGGTGATGATTGTGTGAG+CGG 0.624730 5.3:+49542725 None:intergenic
GTTGGAATATGCCGAAAAGT+GGG 0.628103 5.3:-49542229 MS.gene063050:CDS
AAGTGGGAAGGTAACAGAGA+AGG 0.628618 5.3:-49542213 MS.gene063050:CDS
GTTCCTGCCGAAGACGAGGA+TGG 0.629556 5.3:-49542558 MS.gene063050:CDS
GAAGGCGGTTATGGATGCGG+TGG 0.634390 5.3:-49542195 MS.gene063050:CDS
AAGGGATCATAGAAATGAAG+GGG 0.638177 5.3:+49540445 None:intergenic
GAAATGATGCCGGAAATGGA+AGG 0.642956 5.3:+49542687 None:intergenic
GTGACGGAGAGTGTCTGAGA+TGG 0.649352 5.3:+49542412 None:intergenic
AAAGTTTACTACTTCCCACA+AGG 0.649931 5.3:-49542765 MS.gene063050:CDS
ACTCCCGTAATGGATGGCCA+TGG 0.651503 5.3:-49542606 MS.gene063050:CDS
TGAGATTGTTTCAGCCTCAG+GGG 0.653939 5.3:-49542004 MS.gene063050:CDS
GAAAATACTACATCTGTGTG+AGG 0.654483 5.3:+49542642 None:intergenic
GGTGGATACAGTAACTGCCA+AGG 0.658364 5.3:+49540513 None:intergenic
GAATATGCCGAAAAGTGGGA+AGG 0.675717 5.3:-49542225 MS.gene063050:CDS
TGGGAAGGTAACAGAGAAGG+CGG 0.684452 5.3:-49542210 MS.gene063050:CDS
ATGATGCCGGAAATGGAAGG+AGG 0.688005 5.3:+49542690 None:intergenic
TGAACAAGAAGCTCCTCCAG+AGG 0.697806 5.3:-49542580 MS.gene063050:CDS
GGTGTCTCTTGGATTTACCG+CGG 0.707333 5.3:+49542347 None:intergenic
TGTCCTGTTAAGTGATACCG+GGG 0.717824 5.3:-49542892 MS.gene063050:CDS
TAGCTTCGGAATCTTGACTG+AGG 0.723506 5.3:+49542794 None:intergenic
ACATCTGAGATTGTCCCCTG+AGG 0.727814 5.3:+49541990 None:intergenic
CAGTACACGCACATCTACCG+CGG 0.753216 5.3:-49542364 MS.gene063050:CDS
CATCTGTGTGAGGATCAACA+AGG 0.762493 5.3:+49542652 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAAAAATTTAAAA+TGG + chr5.3:49542697-49542716 None:intergenic 0.0%
!!! AAATTTTTATTTTTATATTT+TGG - chr5.3:49542701-49542720 MS.gene063050:CDS 0.0%
!! ATAATAAAGAGATAAAAATA+TGG + chr5.3:49543399-49543418 None:intergenic 10.0%
!! TCAAAAGATATAAAAAAAAA+TGG + chr5.3:49540930-49540949 None:intergenic 10.0%
!!! GTATTTTATTATATAATACT+TGG + chr5.3:49542850-49542869 None:intergenic 10.0%
!!! TATTTTTATCTCTTTATTAT+AGG - chr5.3:49543399-49543418 MS.gene063050:intron 10.0%
!!! TATATTTAGTTTCTCTTTTT+GGG - chr5.3:49542372-49542391 MS.gene063050:CDS 15.0%
!!! TTATATTTAGTTTCTCTTTT+TGG - chr5.3:49542371-49542390 MS.gene063050:CDS 15.0%
!!! TTTTTATATCTTTTGATCAT+AGG - chr5.3:49540934-49540953 MS.gene063050:intron 15.0%
!! AAATACTCTTAATGCTTAAT+AGG - chr5.3:49543284-49543303 MS.gene063050:intron 20.0%
!! ACTATTGGATAAAGTTATTT+AGG + chr5.3:49543227-49543246 None:intergenic 20.0%
!! ATTCATTAACTTATGTGATA+TGG + chr5.3:49543130-49543149 None:intergenic 20.0%
!! TAAAGTCATTGAACTTAATT+TGG + chr5.3:49540490-49540509 None:intergenic 20.0%
!! TTACAGTTCAAATTTATAGT+TGG - chr5.3:49542140-49542159 MS.gene063050:CDS 20.0%
!!! ATGGTAAATATAGATTTTGT+GGG + chr5.3:49541136-49541155 None:intergenic 20.0%
!!! TAAGAAATCCTAAGTTATTT+TGG + chr5.3:49540441-49540460 None:intergenic 20.0%
! AGAAACTAAATATAACTGCA+AGG + chr5.3:49542366-49542385 None:intergenic 25.0%
! AGAGAATAGAATAGAAGAAA+GGG - chr5.3:49542785-49542804 MS.gene063050:CDS 25.0%
! ATCAATTCTTAATGCAAACT+AGG + chr5.3:49540603-49540622 None:intergenic 25.0%
! ATTAACTTATGTGATATGGT+AGG + chr5.3:49543126-49543145 None:intergenic 25.0%
! ATTGGATAAAGTTATTTAGG+CGG + chr5.3:49543224-49543243 None:intergenic 25.0%
! CATTATCTGATGAATTCTTA+AGG + chr5.3:49540650-49540669 None:intergenic 25.0%
! CTCTTTATTATAGGTTAAGT+GGG - chr5.3:49543408-49543427 MS.gene063050:intron 25.0%
! GAAACTAGAAAAACTTTGTT+TGG - chr5.3:49542748-49542767 MS.gene063050:CDS 25.0%
! TAAAAACAACATCTTCGAAA+TGG - chr5.3:49542952-49542971 MS.gene063050:CDS 25.0%
! TAAATTAGAGTTTCTTAGCT+TGG - chr5.3:49542920-49542939 MS.gene063050:CDS 25.0%
! TATTAACTAATACAAACCCA+AGG + chr5.3:49540401-49540420 None:intergenic 25.0%
! TCAAAGAAATCATTGAATTC+TGG + chr5.3:49542187-49542206 None:intergenic 25.0%
! TCTCTTTATTATAGGTTAAG+TGG - chr5.3:49543407-49543426 MS.gene063050:intron 25.0%
! TTAACTATCAAATTACTCGA+TGG - chr5.3:49542997-49543016 MS.gene063050:CDS 25.0%
! TTCTTAGAGAATATCACTAT+TGG + chr5.3:49540752-49540771 None:intergenic 25.0%
! TTTAAGTGCACTATTAAAGA+TGG + chr5.3:49542904-49542923 None:intergenic 25.0%
!! GATGGTAAATATAGATTTTG+TGG + chr5.3:49541137-49541156 None:intergenic 25.0%
!! GGGAATTTAACATGAATTTT+AGG - chr5.3:49542577-49542596 MS.gene063050:CDS 25.0%
!! TCATTGAACTTAATTTGGTA+TGG + chr5.3:49540485-49540504 None:intergenic 25.0%
!! TGGTAAATATAGATTTTGTG+GGG + chr5.3:49541135-49541154 None:intergenic 25.0%
!!! AAAACGCTGTTTATGTTTTT+TGG + chr5.3:49542298-49542317 None:intergenic 25.0%
!!! AAACGCTGTTTATGTTTTTT+GGG + chr5.3:49542297-49542316 None:intergenic 25.0%
!!! GTTTTTGGGTTCTTTTATAA+CGG - chr5.3:49542812-49542831 MS.gene063050:CDS 25.0%
!!! TAAACTTTAGAATGTAGCTT+CGG + chr5.3:49541205-49541224 None:intergenic 25.0%
!!! TTGCTTTTCCAAAATAACTT+AGG - chr5.3:49540430-49540449 MS.gene063050:CDS 25.0%
!!! TTTTTGGGTTCTTTTATAAC+GGG - chr5.3:49542813-49542832 MS.gene063050:CDS 25.0%
AATTACAAAAGAATTGCCAG+AGG - chr5.3:49542664-49542683 MS.gene063050:CDS 30.0%
ATAATACGATCAGATTGGAA+AGG - chr5.3:49542552-49542571 MS.gene063050:CDS 30.0%
ATTACAAAAGAATTGCCAGA+GGG - chr5.3:49542665-49542684 MS.gene063050:CDS 30.0%
CATTTCAGTATACAGAAGAA+AGG + chr5.3:49542440-49542459 None:intergenic 30.0%
CTATTTCAAATGACTGATGT+TGG - chr5.3:49540897-49540916 MS.gene063050:intron 30.0%
GAAGATTCTTCTTTCTTGAA+AGG + chr5.3:49541947-49541966 None:intergenic 30.0%
GAGAGAATAGAATAGAAGAA+AGG - chr5.3:49542784-49542803 MS.gene063050:CDS 30.0%
TAATACGATCAGATTGGAAA+GGG - chr5.3:49542553-49542572 MS.gene063050:CDS 30.0%
TATCACAGTTCAACAATGTT+TGG + chr5.3:49543582-49543601 None:intergenic 30.0%
TGCAAATAATACGATCAGAT+TGG - chr5.3:49542547-49542566 MS.gene063050:intron 30.0%
TTCTATTCTCTCATATACCT+TGG + chr5.3:49542776-49542795 None:intergenic 30.0%
! AAAAACTTTGTTTGGATCCA+AGG - chr5.3:49542756-49542775 MS.gene063050:CDS 30.0%
! GAATTGATTCCAAGTTGAAA+TGG - chr5.3:49540615-49540634 MS.gene063050:intron 30.0%
! GTACATACACTTTCTTCTTT+TGG - chr5.3:49542058-49542077 MS.gene063050:CDS 30.0%
! TCTTTTGATCATAGGTTAAC+CGG - chr5.3:49540942-49540961 MS.gene063050:intron 30.0%
! TGAACTTAATTTGGTATGGT+AGG + chr5.3:49540481-49540500 None:intergenic 30.0%
! TTTTCGTTAAAAACTCAGCT+GGG - chr5.3:49541721-49541740 MS.gene063050:intron 30.0%
!! ACGTCTAGGATTTTTATTTG+GGG + chr5.3:49541059-49541078 None:intergenic 30.0%
!! CACGTCTAGGATTTTTATTT+GGG + chr5.3:49541060-49541079 None:intergenic 30.0%
!!! GAATTGGTTTGATTTTGTAG+TGG - chr5.3:49541859-49541878 MS.gene063050:intron 30.0%
!!! TTTTGGGTTCTTTTATAACG+GGG - chr5.3:49542814-49542833 MS.gene063050:CDS 30.0%
AAAGTTTACTACTTCCCACA+AGG - chr5.3:49541217-49541236 MS.gene063050:intron 35.0%
AAATCAAACCAATTCGCTCT+CGG + chr5.3:49541854-49541873 None:intergenic 35.0%
AAGGGATCATAGAAATGAAG+GGG + chr5.3:49543540-49543559 None:intergenic 35.0%
ACACAATCTGATTGCAATAG+TGG - chr5.3:49541477-49541496 MS.gene063050:intron 35.0%
ACTAGGCAGTCACATAAATT+CGG + chr5.3:49540586-49540605 None:intergenic 35.0%
ACTATCAAATTACTCGATGG+TGG - chr5.3:49543000-49543019 MS.gene063050:CDS 35.0%
ACTATTTCGAATGACTGATG+TGG - chr5.3:49543366-49543385 MS.gene063050:intron 35.0%
AGATGTCCAACTAATCTTCA+TGG + chr5.3:49541906-49541925 None:intergenic 35.0%
AGCTAAAACCATGGTACTTT+CGG + chr5.3:49542340-49542359 None:intergenic 35.0%
AGTGACAAATTCAGGTAGAA+CGG + chr5.3:49542467-49542486 None:intergenic 35.0%
ATGATGCCATGAAGATTAGT+TGG - chr5.3:49541897-49541916 MS.gene063050:intron 35.0%
ATTAACGACTGAAATGATGC+CGG + chr5.3:49541308-49541327 None:intergenic 35.0%
ATTGTGTGAGAATCTTGCAA+AGG + chr5.3:49541464-49541483 None:intergenic 35.0%
CAAAATTCTTTGTGATCAGG+AGG + chr5.3:49542262-49542281 None:intergenic 35.0%
CTGCAAAATTCTTTGTGATC+AGG + chr5.3:49542265-49542284 None:intergenic 35.0%
GAAAATACTACATCTGTGTG+AGG + chr5.3:49541343-49541362 None:intergenic 35.0%
GAAGGGATCATAGAAATGAA+GGG + chr5.3:49543541-49543560 None:intergenic 35.0%
GTATATACAGTTCAGCTTTG+TGG + chr5.3:49541030-49541049 None:intergenic 35.0%
GTCACATAAATTCGGAATTC+TGG + chr5.3:49540578-49540597 None:intergenic 35.0%
TAGGCGGTCAATGATAAAAA+CGG + chr5.3:49543208-49543227 None:intergenic 35.0%
TATGGTAGGACTCATAACAA+AGG + chr5.3:49540467-49540486 None:intergenic 35.0%
TGAAGGGATCATAGAAATGA+AGG + chr5.3:49543542-49543561 None:intergenic 35.0%
TGATGAATTCTTAAGGCACA+GGG + chr5.3:49540643-49540662 None:intergenic 35.0%
TTAAAATGGTATAGACCCTC+TGG + chr5.3:49542683-49542702 None:intergenic 35.0%
! ATGAAGATTAGTTGGACATC+TGG - chr5.3:49541905-49541924 MS.gene063050:intron 35.0%
! ATTAGAGTTTCTTAGCTTGG+TGG - chr5.3:49542923-49542942 MS.gene063050:CDS 35.0%
! CAAAGAATTTTGCAGCATTG+AGG - chr5.3:49542270-49542289 MS.gene063050:intron 35.0%
! CTTTTGATCATAGGTTAACC+GGG - chr5.3:49540943-49540962 MS.gene063050:intron 35.0%
! GTTCAACAATGTTTGGTTCA+AGG + chr5.3:49543575-49543594 None:intergenic 35.0%
! GTTTTCGTTAAAAACTCAGC+TGG - chr5.3:49541720-49541739 MS.gene063050:intron 35.0%
! TTTGGAATCTTCGAGATTTC+AGG + chr5.3:49540974-49540993 None:intergenic 35.0%
!! CGTCTAGGATTTTTATTTGG+GGG + chr5.3:49541058-49541077 None:intergenic 35.0%
!! GCACGTCTAGGATTTTTATT+TGG + chr5.3:49541061-49541080 None:intergenic 35.0%
!! GTCTAGGATTTTTATTTGGG+GGG + chr5.3:49541057-49541076 None:intergenic 35.0%
!! TCTAGGATTTTTATTTGGGG+GGG + chr5.3:49541056-49541075 None:intergenic 35.0%
!!! AGAAGAAAGGGAAGTGTTTT+TGG - chr5.3:49542797-49542816 MS.gene063050:CDS 35.0%
!!! GAAGAAAGGGAAGTGTTTTT+GGG - chr5.3:49542798-49542817 MS.gene063050:CDS 35.0%
AAAATCTGGCAGAAATGTGC+TGG - chr5.3:49541163-49541182 MS.gene063050:intron 40.0%
AACAACAAGAAACTCGTCAC+TGG - chr5.3:49541687-49541706 MS.gene063050:intron 40.0%
AAGGAGGATAACGATGAAGA+AGG + chr5.3:49541279-49541298 None:intergenic 40.0%
ACAATCCAGTGAATGATTGG+TGG - chr5.3:49543024-49543043 MS.gene063050:CDS 40.0%
ACTATTGGAGCAAGTTACGT+AGG + chr5.3:49540737-49540756 None:intergenic 40.0%
AGGAGGATAACGATGAAGAA+GGG + chr5.3:49541278-49541297 None:intergenic 40.0%
AGGCGGTCAATGATAAAAAC+GGG + chr5.3:49543207-49543226 None:intergenic 40.0%
ATGAGATTGTTTCAGCCTCA+GGG - chr5.3:49541977-49541996 MS.gene063050:CDS 40.0%
CAATCCAGTGAATGATTGGT+GGG - chr5.3:49543025-49543044 MS.gene063050:CDS 40.0%
CTCCTTCTAATGTCCCTAAT+TGG - chr5.3:49542023-49542042 MS.gene063050:CDS 40.0%
CTCGTTGCTTCATGGTTTAT+CGG + chr5.3:49542405-49542424 None:intergenic 40.0%
CTGATGAATTCTTAAGGCAC+AGG + chr5.3:49540644-49540663 None:intergenic 40.0%
GAAATCTCGCAGAATCCAAA+CGG - chr5.3:49543439-49543458 MS.gene063050:intron 40.0%
GAATCGTCCAAGTTAAGCTT+CGG + chr5.3:49541546-49541565 None:intergenic 40.0%
GCTAAAACCATGGTACTTTC+GGG + chr5.3:49542339-49542358 None:intergenic 40.0%
GGAACAATCCAGTGAATGAT+TGG - chr5.3:49543021-49543040 MS.gene063050:CDS 40.0%
GTTGGAATATGCCGAAAAGT+GGG - chr5.3:49541753-49541772 MS.gene063050:intron 40.0%
TCTGATTGCAATAGTGGCTA+TGG - chr5.3:49541483-49541502 MS.gene063050:intron 40.0%
TCTGTCCTGTTAAGTGATAC+CGG - chr5.3:49541088-49541107 MS.gene063050:intron 40.0%
TGAATAAGTTCAACCTGCCA+AGG + chr5.3:49541007-49541026 None:intergenic 40.0%
TGATAACTCTCGTTGCTTCA+TGG + chr5.3:49542413-49542432 None:intergenic 40.0%
TGTATTATCCGAGAGCGAAT+TGG - chr5.3:49541843-49541862 MS.gene063050:intron 40.0%
TTCCAAACTGTGTCAATCCT+TGG - chr5.3:49540987-49541006 MS.gene063050:intron 40.0%
TTCTATGATCCCTTCAACAC+CGG - chr5.3:49543546-49543565 MS.gene063050:intron 40.0%
TTTGGATTCTGCGAGATTTC+AGG + chr5.3:49543439-49543458 None:intergenic 40.0%
! AAGAGACACCTTTTCAGTAG+GGG - chr5.3:49541648-49541667 MS.gene063050:intron 40.0%
! AAGTCTAGGCCTTTTTGTTG+GGG + chr5.3:49543500-49543519 None:intergenic 40.0%
! AATGTTTGGTTCAAGGATCC+CGG + chr5.3:49543568-49543587 None:intergenic 40.0%
! ACATGTTCTAAGTGACCTTG+TGG + chr5.3:49541235-49541254 None:intergenic 40.0%
! ACATTTCTGCCAGATTTTGG+TGG + chr5.3:49541161-49541180 None:intergenic 40.0%
! AGATTTTGTGGGGAATGCTT+TGG + chr5.3:49541125-49541144 None:intergenic 40.0%
! AGCACATTTCTGCCAGATTT+TGG + chr5.3:49541164-49541183 None:intergenic 40.0%
! CAAGAGACACCTTTTCAGTA+GGG - chr5.3:49541647-49541666 MS.gene063050:intron 40.0%
! CAAGTCTAGGCCTTTTTGTT+GGG + chr5.3:49543501-49543520 None:intergenic 40.0%
! CATGTTCTAAGTGACCTTGT+GGG + chr5.3:49541234-49541253 None:intergenic 40.0%
! TAAATTCGGAATTCTGGCTG+AGG + chr5.3:49540572-49540591 None:intergenic 40.0%
!! ATTTCTGCCAGATTTTGGTG+GGG + chr5.3:49541159-49541178 None:intergenic 40.0%
!! CATTTCTGCCAGATTTTGGT+GGG + chr5.3:49541160-49541179 None:intergenic 40.0%
!! TCTGTTACCTTCCCACTTTT+CGG + chr5.3:49541767-49541786 None:intergenic 40.0%
!! TGAATTTTAGGAGATCCTCG+TGG - chr5.3:49542589-49542608 MS.gene063050:CDS 40.0%
!! TTTTATAACGGGGAAGCTTC+AGG - chr5.3:49542824-49542843 MS.gene063050:CDS 40.0%
AAACTGTGTCAATCCTTGGC+AGG - chr5.3:49540991-49541010 MS.gene063050:intron 45.0%
AAGGGTGATGATTGTGTGAG+CGG + chr5.3:49541260-49541279 None:intergenic 45.0%
AAGTCCATCCCCTACTGAAA+AGG + chr5.3:49541659-49541678 None:intergenic 45.0%
AAGTGGGAAGGTAACAGAGA+AGG - chr5.3:49541769-49541788 MS.gene063050:intron 45.0%
ACGATCAGATTGGAAAGGGA+GGG - chr5.3:49542557-49542576 MS.gene063050:CDS 45.0%
AGTCGAGCAGTGACAAATTC+AGG + chr5.3:49542475-49542494 None:intergenic 45.0%
AGTGAATGATTGGTGGGATC+AGG - chr5.3:49543031-49543050 MS.gene063050:intron 45.0%
ATTCTCAGTCACTGCCAGTT+TGG + chr5.3:49542647-49542666 None:intergenic 45.0%
ATTGTAGCCATCCTCGTCTT+CGG + chr5.3:49541434-49541453 None:intergenic 45.0%
CACAGGGAACCATTTCAACT+TGG + chr5.3:49540627-49540646 None:intergenic 45.0%
CATCTGTGTGAGGATCAACA+AGG + chr5.3:49541333-49541352 None:intergenic 45.0%
CATGGTACTTTCGGGAAACA+AGG + chr5.3:49542331-49542350 None:intergenic 45.0%
CGCCAATTAGGGACATTAGA+AGG + chr5.3:49542028-49542047 None:intergenic 45.0%
CGTTATCCTCCTTCCATTTC+CGG - chr5.3:49541286-49541305 MS.gene063050:intron 45.0%
CGTTGGAATATGCCGAAAAG+TGG - chr5.3:49541752-49541771 MS.gene063050:intron 45.0%
CTGTATGAATGTTCTGCCAG+AGG - chr5.3:49542616-49542635 MS.gene063050:CDS 45.0%
CTGTCCTGTTAAGTGATACC+GGG - chr5.3:49541089-49541108 MS.gene063050:intron 45.0%
GAAATGATGCCGGAAATGGA+AGG + chr5.3:49541298-49541317 None:intergenic 45.0%
GAATATGCCGAAAAGTGGGA+AGG - chr5.3:49541757-49541776 MS.gene063050:intron 45.0%
GACTGAAATGATGCCGGAAA+TGG + chr5.3:49541302-49541321 None:intergenic 45.0%
GATCTTGCCGAAGCTTAACT+TGG - chr5.3:49541536-49541555 MS.gene063050:intron 45.0%
GATGAGATTGTTTCAGCCTC+AGG - chr5.3:49541976-49541995 MS.gene063050:CDS 45.0%
GCAAGATCAAGTCAACGCAA+GGG + chr5.3:49541524-49541543 None:intergenic 45.0%
GCAAGGTTGAGCTAAAACCA+TGG + chr5.3:49542349-49542368 None:intergenic 45.0%
GCCTTGAAGAATGTCAGTGA+CGG + chr5.3:49541589-49541608 None:intergenic 45.0%
GGAATTGGCGGTGAAAAACA+TGG - chr5.3:49541808-49541827 MS.gene063050:intron 45.0%
GTGAATGATTGGTGGGATCA+GGG - chr5.3:49543032-49543051 MS.gene063050:intron 45.0%
GTTGCTTCATGGTTTATCGG+TGG + chr5.3:49542402-49542421 None:intergenic 45.0%
TACGATCAGATTGGAAAGGG+AGG - chr5.3:49542556-49542575 MS.gene063050:CDS 45.0%
TAGCTTCGGAATCTTGACTG+AGG + chr5.3:49541191-49541210 None:intergenic 45.0%
TCAGCTGGGAAGATATTCGT+TGG - chr5.3:49541735-49541754 MS.gene063050:intron 45.0%
TCCGTCACTGACATTCTTCA+AGG - chr5.3:49541585-49541604 MS.gene063050:intron 45.0%
TCTATGATCCCTTCAACACC+GGG - chr5.3:49543547-49543566 MS.gene063050:intron 45.0%
TGAGATTGTTTCAGCCTCAG+GGG - chr5.3:49541978-49541997 MS.gene063050:CDS 45.0%
TGATCCCACCAATCATTCAC+TGG + chr5.3:49543032-49543051 None:intergenic 45.0%
TGCCAAGGATTGACACAGTT+TGG + chr5.3:49540992-49541011 None:intergenic 45.0%
TGTCCTGTTAAGTGATACCG+GGG - chr5.3:49541090-49541109 MS.gene063050:intron 45.0%
TTACCATCCCCACCAAAATC+TGG - chr5.3:49541149-49541168 MS.gene063050:intron 45.0%
TTTCGGGAAACAAGGTTCGA+TGG + chr5.3:49542323-49542342 None:intergenic 45.0%
! AGTCTAGGCCTTTTTGTTGG+GGG + chr5.3:49543499-49543518 None:intergenic 45.0%
! ATCCAAACGGTGTCAATCCT+TGG - chr5.3:49543452-49543471 MS.gene063050:intron 45.0%
! CCAAGAGACACCTTTTCAGT+AGG - chr5.3:49541646-49541665 MS.gene063050:intron 45.0%
! GCAAGTCTAGGCCTTTTTGT+TGG + chr5.3:49543502-49543521 None:intergenic 45.0%
!! CCTACTGAAAAGGTGTCTCT+TGG + chr5.3:49541649-49541668 None:intergenic 45.0%
!! CTTGTTTCCCGAAAGTACCA+TGG - chr5.3:49542329-49542348 MS.gene063050:CDS 45.0%
!! GGCAAGGTATCGTTCTTGTT+GGG - chr5.3:49543057-49543076 MS.gene063050:intron 45.0%
!! TCGAGATTTCAGGTTCATCC+CGG + chr5.3:49540964-49540983 None:intergenic 45.0%
ACATTCTTCAAGGCCGAGTC+TGG - chr5.3:49541595-49541614 MS.gene063050:intron 50.0%
ACCTGAAGCATGCGCCAATT+AGG + chr5.3:49542040-49542059 None:intergenic 50.0%
ACTTCTCCTCACTCCCGTAA+TGG - chr5.3:49541366-49541385 MS.gene063050:intron 50.0%
AGAGAAGGCGGTTATGGATG+CGG - chr5.3:49541784-49541803 MS.gene063050:intron 50.0%
ATGATGCCGGAAATGGAAGG+AGG + chr5.3:49541295-49541314 None:intergenic 50.0%
ATGATTGGTGGGATCAGGGA+CGG - chr5.3:49543036-49543055 MS.gene063050:intron 50.0%
ATGGCCATGGCCATCCATTA+CGG + chr5.3:49541383-49541402 None:intergenic 50.0%
CACCATTCCCCCCAACAAAA+AGG - chr5.3:49543488-49543507 MS.gene063050:intron 50.0%
CATTCATACAGCTTGCCACG+AGG + chr5.3:49542607-49542626 None:intergenic 50.0%
CCTGAAGCATGCGCCAATTA+GGG + chr5.3:49542039-49542058 None:intergenic 50.0%
CTGGAGGAGCTTCTTGTTCA+TGG + chr5.3:49541402-49541421 None:intergenic 50.0%
GAGCTTCTTGTTCATGGCCA+TGG + chr5.3:49541396-49541415 None:intergenic 50.0%
GGCAAGATCAAGTCAACGCA+AGG + chr5.3:49541525-49541544 None:intergenic 50.0%
GGTAACAGAGAAGGCGGTTA+TGG - chr5.3:49541778-49541797 MS.gene063050:intron 50.0%
GGTGGATACAGTAACTGCCA+AGG + chr5.3:49543472-49543491 None:intergenic 50.0%
GGTGTCTCTTGGATTTACCG+CGG + chr5.3:49541638-49541657 None:intergenic 50.0%
GGTTATGGATGCGGTGGAAT+TGG - chr5.3:49541793-49541812 MS.gene063050:intron 50.0%
TACGGGAGTGAGGAGAAGTT+TGG + chr5.3:49541365-49541384 None:intergenic 50.0%
TATGGATGCGGTGGAATTGG+CGG - chr5.3:49541796-49541815 MS.gene063050:intron 50.0%
TGAACAAGAAGCTCCTCCAG+AGG - chr5.3:49541402-49541421 MS.gene063050:intron 50.0%
TGCCAAGGATTGACACCGTT+TGG + chr5.3:49543457-49543476 None:intergenic 50.0%
TGCCAGAGGTCTTTCCAAAC+TGG - chr5.3:49542630-49542649 MS.gene063050:CDS 50.0%
TGCCAGTTTGGAAAGACCTC+TGG + chr5.3:49542635-49542654 None:intergenic 50.0%
TGGGAAGGTAACAGAGAAGG+CGG - chr5.3:49541772-49541791 MS.gene063050:intron 50.0%
! ACATCTGAGATTGTCCCCTG+AGG + chr5.3:49541995-49542014 None:intergenic 50.0%
! CTTTTTGTTGGGGGGAATGG+TGG + chr5.3:49543490-49543509 None:intergenic 50.0%
! GACACCTTTTCAGTAGGGGA+TGG - chr5.3:49541652-49541671 MS.gene063050:intron 50.0%
! GTCTAGGCCTTTTTGTTGGG+GGG + chr5.3:49543498-49543517 None:intergenic 50.0%
! TCAAGGATCCCGGTGTTGAA+GGG + chr5.3:49543558-49543577 None:intergenic 50.0%
! TTCAAGGATCCCGGTGTTGA+AGG + chr5.3:49543559-49543578 None:intergenic 50.0%
!! CAGGAGGTTGTGTTGCTTCT+TGG + chr5.3:49542246-49542265 None:intergenic 50.0%
!! CGGCAAGGTATCGTTCTTGT+TGG - chr5.3:49543056-49543075 MS.gene063050:intron 50.0%
!! TGCTTTGGAATGTAGCTCCC+CGG + chr5.3:49541110-49541129 None:intergenic 50.0%
ACAGAGCTCTCAGCACGTCT+AGG + chr5.3:49541073-49541092 None:intergenic 55.0%
CAGTACACGCACATCTACCG+CGG - chr5.3:49541618-49541637 MS.gene063050:intron 55.0%
CCCTAATTGGCGCATGCTTC+AGG - chr5.3:49542036-49542055 MS.gene063050:CDS 55.0%
GAAGGGGTCTGCAGAACTCT+GGG + chr5.3:49543524-49543543 None:intergenic 55.0%
GCAGAACTCTGGGCAAGTCT+AGG + chr5.3:49543514-49543533 None:intergenic 55.0%
GCTCCCCGGTATCACTTAAC+AGG + chr5.3:49541096-49541115 None:intergenic 55.0%
TGAAGGGGTCTGCAGAACTC+TGG + chr5.3:49543525-49543544 None:intergenic 55.0%
TGGCCATGGCCATCCATTAC+GGG + chr5.3:49541382-49541401 None:intergenic 55.0%
TGTGCGTGTACTGCCAGACT+CGG + chr5.3:49541611-49541630 None:intergenic 55.0%
! CTCCTCACTCCCGTAATGGA+TGG - chr5.3:49541370-49541389 MS.gene063050:intron 55.0%
! GGCCTTTTTGTTGGGGGGAA+TGG + chr5.3:49543493-49543512 None:intergenic 55.0%
!! ACTCCCGTAATGGATGGCCA+TGG - chr5.3:49541376-49541395 MS.gene063050:intron 55.0%
!! CTGCCAGATTTTGGTGGGGA+TGG + chr5.3:49541155-49541174 None:intergenic 55.0%
!! GTGACGGAGAGTGTCTGAGA+TGG + chr5.3:49541573-49541592 None:intergenic 55.0%
AGAGGTTCCTGCCGAAGACG+AGG - chr5.3:49541420-49541439 MS.gene063050:intron 60.0%
GAAGGCGGTTATGGATGCGG+TGG - chr5.3:49541787-49541806 MS.gene063050:intron 60.0%
GGCCATCCATTACGGGAGTG+AGG + chr5.3:49541375-49541394 None:intergenic 60.0%
GTTCCTGCCGAAGACGAGGA+TGG - chr5.3:49541424-49541443 MS.gene063050:intron 60.0%
TAGCCATCCTCGTCTTCGGC+AGG + chr5.3:49541430-49541449 None:intergenic 60.0%
TCGTCTTCGGCAGGAACCTC+TGG + chr5.3:49541421-49541440 None:intergenic 60.0%
TCTTCGGCAGGAACCTCTGG+AGG + chr5.3:49541418-49541437 None:intergenic 60.0%
TGGTGGGATCAGGGACGGCA+AGG - chr5.3:49543041-49543060 MS.gene063050:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 49540389 49543615 49540389 ID=MS.gene063050
chr5.3 mRNA 49540389 49543615 49540389 ID=MS.gene063050.t1;Parent=MS.gene063050
chr5.3 exon 49543601 49543615 49543601 ID=MS.gene063050.t1.exon1;Parent=MS.gene063050.t1
chr5.3 CDS 49543601 49543615 49543601 ID=cds.MS.gene063050.t1;Parent=MS.gene063050.t1
chr5.3 exon 49542551 49543048 49542551 ID=MS.gene063050.t1.exon2;Parent=MS.gene063050.t1
chr5.3 CDS 49542551 49543048 49542551 ID=cds.MS.gene063050.t1;Parent=MS.gene063050.t1
chr5.3 exon 49542296 49542455 49542296 ID=MS.gene063050.t1.exon3;Parent=MS.gene063050.t1
chr5.3 CDS 49542296 49542455 49542296 ID=cds.MS.gene063050.t1;Parent=MS.gene063050.t1
chr5.3 exon 49541947 49542257 49541947 ID=MS.gene063050.t1.exon4;Parent=MS.gene063050.t1
chr5.3 CDS 49541947 49542257 49541947 ID=cds.MS.gene063050.t1;Parent=MS.gene063050.t1
chr5.3 exon 49540389 49540583 49540389 ID=MS.gene063050.t1.exon5;Parent=MS.gene063050.t1
chr5.3 CDS 49540389 49540583 49540389 ID=cds.MS.gene063050.t1;Parent=MS.gene063050.t1
Gene Sequence

>MS.gene063050

ATGTCTTCTCCTTGGGTTTGTATTAGTTAATAAAATCTGCTTTGCTTTTCCAAAATAACTTAGGATTTCTTAATTACATTGTTATGAGTCCTACCATACCAAATTAAGTTCAATGACTTTAGCAACTTTATACTCAAATGATGCTATTCTTTAAGAAGTTGAAATAGTTCTAAGAGTTTACCTCAGCCAGAATTCCGAATTTATGTGACTGCCTAGTTTGCATTAAGAATTGATTCCAAGTTGAAATGGTTCCCTGTGCCTTAAGAATTCATCAGATAATGTGTATGTAAGCAGATTACATTTTACAATCAATTGTTTATGTTAGACTTTTTTTATATGTCACTGCCTACGTAACTTGCTCCAATAGTGATATTCTCTAAGAAACAGTTATGAAGTTTAAAAACTTTCTAATTATTTCTCGTTGTAAATATTCTTAATGCTAAGTATGATCTTGATTTTGAATTGCATGTTAATAATTATTAATAAACATTTGATGTGTAAATACATACTATTTCAAATGACTGATGTTGGATTCTTACCATTTTTTTTTATATCTTTTGATCATAGGTTAACCGGGATGAACCTGAAATCTCGAAGATTCCAAACTGTGTCAATCCTTGGCAGGTTGAACTTATTCACCACAAAGCTGAACTGTATATACAATCCCCCCCAAATAAAAATCCTAGACGTGCTGAGAGCTCTGTCCTGTTAAGTGATACCGGGGAGCTACATTCCAAAGCATTCCCCACAAAATCTATATTTACCATCCCCACCAAAATCTGGCAGAAATGTGCTGGAGCCTCAGTCAAGATTCCGAAGCTACATTCTAAAGTTTACTACTTCCCACAAGGTCACTTAGAACATGTCTCCGCTCACACAATCATCACCCTTCTTCATCGTTATCCTCCTTCCATTTCCGGCATCATTTCAGTCGTTAATCTCCTTGTTGATCCTCACACAGATGTAGTATTTTCCAAACTTCTCCTCACTCCCGTAATGGATGGCCATGGCCATGAACAAGAAGCTCCTCCAGAGGTTCCTGCCGAAGACGAGGATGGCTACAATGTTGTTTCCTTTGCAAGATTCTCACACAATCTGATTGCAATAGTGGCTATGGATTCATTGTATCTCTCCCTTGCGTTGACTTGATCTTGCCGAAGCTTAACTTGGACGATTCAATGCCATCTCAGACACTCTCCGTCACTGACATTCTTCAAGGCCGAGTCTGGCAGTACACGCACATCTACCGCGGTAAATCCAAGAGACACCTTTTCAGTAGGGGATGGACTTCATTTGTCAACAACAAGAAACTCGTCACTGGTGATTCAGTTGTTTTCGTTAAAAACTCAGCTGGGAAGATATTCGTTGGAATATGCCGAAAAGTGGGAAGGTAACAGAGAAGGCGGTTATGGATGCGGTGGAATTGGCGGTGAAAAACATGGCATTTGAAGTTTTGTATTATCCGAGAGCGAATTGGTTTGATTTTGTAGTGGATGCAAAAGTTGTTGATGATGCCATGAAGATTAGTTGGACATCTGGAATTCAAGTCAAGCTTCCTTTCAAGAAAGAAGAATCTTCAAATTCAAAGATGAGATTGTTTCAGCCTCAGGGGACAATCTCAGATGTTTCTAATGCTCCTTCTAATGTCCCTAATTGGCGCATGCTTCAGGTACATACACTTTCTTCTTTTGGTGATATTATATTTCAAGTGCATAATGTTATCTAGTACTACTTTTGTTTGAAAATAAATATTACAGTTCAAATTTATAGTTGGTACAAATGTACAATGTTGAATCCAGAATTCAATGATTTCTTTGATAAGTATTAGTGTTGAAGTTAATGCATGATTGATCACCAAGAAGCAACACAACCTCCTGATCACAAAGAATTTTGCAGCATTGAGGTCCCAAAAAACATAAACAGCGTTTTCACCATCGAACCTTGTTTCCCGAAAGTACCATGGTTTTAGCTCAACCTTGCAGTTATATTTAGTTTCTCTTTTTGGGATTTCCACCGATAAACCATGAAGCAACGAGAGTTATCATCTACCTTTCTTCTGTATACTGAAATGTAAACCGTTCTACCTGAATTTGTCACTGCTCGACTTGAGTTTTGCATTGTTTTTGATGCGTTTATTAGAAGAAAAAAAGTGAGATGATGCAAATAATACGATCAGATTGGAAAGGGAGGGAATTTAACATGAATTTTAGGAGATCCTCGTGGCAAGCTGTATGAATGTTCTGCCAGAGGTCTTTCCAAACTGGCAGTGACTGAGAATTACAAAAGAATTGCCAGAGGGTCTATACCATTTTAAATTTTTATTTTTATATTTTGGAATGTAGCTTTTAATTCTGAAGTTGAAACTAGAAAAACTTTGTTTGGATCCAAGGTATATGAGAGAATAGAATAGAAGAAAGGGAAGTGTTTTTGGGTTCTTTTATAACGGGGAAGCTTCAGGCCAAGTATTATATAATAAAATACATTTTCTTGTTTTTATTGCAACATCTTATAACCATCTTTAATAGTGCACTTAAATTAGAGTTTCTTAGCTTGGTGGAGAAATTAAAAACAACATCTTCGAAATGGTTGAAAACAGAATCAAAAGATTTTAACTATCAAATTACTCGATGGTGGAACAATCCAGTGAATGATTGGTGGGATCAGGGACGGCAAGGTATCGTTCTTGTTGGGATGCTAGAATCGTATATAGCTTCTTTATTCCTTTGTTATGAGTCCTACCATATCACATAAGTTAATGAATTTTGCAACTTTATACTCAAACGATGCAATTCTTTATGAAATTGTTTATATCAGACCCGTTTTTATCATTGACCGCCTAAATAACTTTATCCAATAGTGATATTCTCTAAGAACTTTCTTAAAAATTATTGTTGTAAATACTCTTAATGCTTAATAGGATCTTGATTTTGACTCGCATGTTATTAATTGATAATAAACATTTGATATGTAAATACATACTATTTCGAATGACTGATGTGGATTCTCGCCATATTTTTATCTCTTTATTATAGGTTAAGTGGGATGAACCTGAAATCTCGCAGAATCCAAACGGTGTCAATCCTTGGCAGTTACTGTATCCACCATTCCCCCCAACAAAAAGGCCTAGACTTGCCCAGAGTTCTGCAGACCCCTTCATTTCTATGATCCCTTCAACACCGGGATCCTTGAACCAAACATTGTTGAACTGTGATACTTTTCCTGCATGA
Protein sequence

>MS.gene063050.t1

MSSPWVNRDEPEISKIPNCVNPWQVELIHHKAELYIQSPPNKNPRRAESSVLLSDTGELHSKAFPTKSIFTIPTKIWQKCAGASVKIPKLHSKVYYFPQGHLEHVSAHTIITLLHRYPPSISGIISVVNLLVDPHTDVVFSKLLLTPVMDGHGHEQEAPPEVPAEDEDGYNLNLDDSMPSQTLSVTDILQGRVWQYTHIYRGKSKRHLFSRGWTSFVNNKKLVTDIRWNMPKSGKVTEKAVMDAVELAVKNMAFEVLYYPRANWFDFVVDAKVVDDAMKISWTSGIQVKLPFKKEESSNSKMRLFQPQGTISDVSNAPSNVPNWRMLQVKWDEPEISQNPNGVNPWQLLYPPFPPTKRPRLAQSSADPFISMIPSTPGSLNQTLLNCDTFPA