Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063102.t1 | XP_003603927.1 | 79.5 | 464 | 67 | 8 | 1 | 463 | 1 | 437 | 2.90E-192 | 681.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063102.t1 | P70371 | 34.5 | 139 | 74 | 5 | 337 | 459 | 279 | 416 | 5.0e-07 | 57.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063102.t1 | G7J729 | 79.5 | 464 | 67 | 8 | 1 | 463 | 1 | 437 | 2.1e-192 | 681.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene063102.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063102.t1 | MTR_3g116690 | 80.388 | 464 | 63 | 9 | 1 | 463 | 1 | 437 | 0.0 | 679 |
| MS.gene063102.t1 | MTR_3g117790 | 80.388 | 464 | 63 | 9 | 1 | 463 | 1 | 437 | 0.0 | 670 |
| MS.gene063102.t1 | MTR_3g117790 | 78.448 | 464 | 63 | 10 | 1 | 463 | 1 | 428 | 0.0 | 642 |
| MS.gene063102.t1 | MTR_3g014420 | 79.032 | 124 | 21 | 2 | 201 | 324 | 17 | 135 | 1.79e-59 | 191 |
| MS.gene063102.t1 | MTR_3g467090 | 32.824 | 262 | 119 | 5 | 227 | 459 | 387 | 620 | 1.19e-30 | 125 |
| MS.gene063102.t1 | MTR_3g467090 | 33.023 | 215 | 108 | 9 | 6 | 216 | 8 | 190 | 1.68e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063102.t1 | AT5G58340 | 25.984 | 381 | 247 | 13 | 96 | 457 | 81 | 445 | 2.96e-14 | 75.1 |
| MS.gene063102.t1 | AT5G58340 | 25.984 | 381 | 247 | 13 | 96 | 457 | 81 | 445 | 2.96e-14 | 75.1 |
| MS.gene063102.t1 | AT1G15720 | 28.184 | 369 | 195 | 16 | 96 | 457 | 81 | 386 | 2.98e-12 | 68.6 |
Find 114 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCATCATTGTTAACATTT+AGG | 0.186976 | 3.3:-95690043 | None:intergenic |
| AAAGAAATAACCAACCATTA+TGG | 0.218651 | 3.3:-95689270 | None:intergenic |
| CTGCTTGGAGGTAGTGTTTA+GGG | 0.228026 | 3.3:-95688988 | None:intergenic |
| CTCTTGAATGGCTTTCCTTC+TGG | 0.254243 | 3.3:-95689155 | None:intergenic |
| TCCAAGCAGTTGACAGAATA+TGG | 0.254939 | 3.3:+95689002 | MS.gene063102:CDS |
| TAAGTGAATCCCCGTTCTTT+TGG | 0.273307 | 3.3:-95689857 | None:intergenic |
| TAACTCCAAAATTGAGATTC+TGG | 0.273343 | 3.3:+95689065 | MS.gene063102:CDS |
| GTCTGGCATACAAATAGAAT+TGG | 0.288931 | 3.3:-95689925 | None:intergenic |
| TGAGTACGAGCAGAACTATT+TGG | 0.294065 | 3.3:-95690125 | None:intergenic |
| GCATCGCTAATAGGTGGATT+AGG | 0.298127 | 3.3:-95688884 | None:intergenic |
| AAAGACAATGGAAGGCTTAA+AGG | 0.299896 | 3.3:+95689747 | MS.gene063102:CDS |
| ACTGCTTGGAGGTAGTGTTT+AGG | 0.310482 | 3.3:-95688989 | None:intergenic |
| TATAGAGAGTGAGCATATTA+AGG | 0.322387 | 3.3:+95688664 | MS.gene063102:CDS |
| TCAGAATTGGAGAAGGAAAC+TGG | 0.354877 | 3.3:+95691121 | MS.gene063102:intron |
| AAGAAATAACCAACCATTAT+GGG | 0.366017 | 3.3:-95689269 | None:intergenic |
| CATCTTCCGATTATCGATTT+CGG | 0.378562 | 3.3:-95688714 | None:intergenic |
| GATGATGAACATCACTTTGA+TGG | 0.379549 | 3.3:-95690088 | None:intergenic |
| CATCGCTAATAGGTGGATTA+GGG | 0.381491 | 3.3:-95688883 | None:intergenic |
| CCATTCATCGATAGATGCTT+TGG | 0.387362 | 3.3:-95688777 | None:intergenic |
| TGTTGTTGTTGTTGAGGAAA+TGG | 0.391023 | 3.3:+95689785 | MS.gene063102:CDS |
| GATTTCATGGCATCGCTAAT+AGG | 0.391784 | 3.3:-95688893 | None:intergenic |
| GTAGACATAAGCAGATTTCA+TGG | 0.396640 | 3.3:-95688906 | None:intergenic |
| GGAAAGGTTAGGGTGGTGTT+TGG | 0.397081 | 3.3:+95688613 | MS.gene063102:CDS |
| TTTGTATGCCAGACATTGTA+AGG | 0.401380 | 3.3:+95689934 | MS.gene063102:CDS |
| GAAGAAGCTTTCTCCGTTGA+AGG | 0.405658 | 3.3:+95690666 | MS.gene063102:CDS |
| CACCTGCACCTGCTGCTTCA+AGG | 0.406135 | 3.3:-95688955 | None:intergenic |
| GGAAGTTGCCTTCGTAAGAT+TGG | 0.411891 | 3.3:-95690066 | None:intergenic |
| TGGTGTTTGGAATTCGTTCT+TGG | 0.411975 | 3.3:+95688626 | MS.gene063102:CDS |
| GCTCAAAATCAATCCCATAA+TGG | 0.413594 | 3.3:+95689256 | MS.gene063102:CDS |
| TTAACGAGGCCCAAAAGAAC+GGG | 0.420375 | 3.3:+95689847 | MS.gene063102:CDS |
| TCCATATTCTGTCAACTGCT+TGG | 0.421745 | 3.3:-95689003 | None:intergenic |
| GGTGGATTAGGGTTTGAAGA+AGG | 0.424767 | 3.3:-95688872 | None:intergenic |
| TTTAGGCAAGCATGTGGGTT+GGG | 0.424815 | 3.3:-95690026 | None:intergenic |
| GGGTTTGAAGGGTTTGAAGA+AGG | 0.425424 | 3.3:-95688851 | None:intergenic |
| AAAACTACTTCTAATTGATT+GGG | 0.433610 | 3.3:+95688826 | MS.gene063102:CDS |
| GCATGTATCGTGAGTTGAAA+AGG | 0.433870 | 3.3:-95689108 | None:intergenic |
| GGGTTTGAAGAAGGGTTTGA+AGG | 0.441728 | 3.3:-95688863 | None:intergenic |
| GCAAATAACTTCTTCCCTCC+AGG | 0.443932 | 3.3:-95689042 | None:intergenic |
| GTGGATTAGGGTTTGAAGAA+GGG | 0.447021 | 3.3:-95688871 | None:intergenic |
| TGGACAACAACTCATCTTCA+AGG | 0.456297 | 3.3:-95688757 | None:intergenic |
| AATGGGAAGAGGATAATCTA+AGG | 0.459156 | 3.3:+95690740 | MS.gene063102:CDS |
| GGAGAAAGCTTCTTCCTCTC+TGG | 0.461592 | 3.3:-95690658 | None:intergenic |
| CACAAATCAGGAGCCACAAA+TGG | 0.462731 | 3.3:+95689977 | MS.gene063102:CDS |
| TGGAGAAATTTGAAGCGGTC+TGG | 0.467731 | 3.3:+95691279 | MS.gene063102:CDS |
| ATTTGAAAATGGAAAGGTTA+GGG | 0.470688 | 3.3:+95688603 | None:intergenic |
| ACATCAGACCTTACAATGTC+TGG | 0.471043 | 3.3:-95689942 | None:intergenic |
| GTACATTTGCATCTTTACTC+TGG | 0.471288 | 3.3:-95690004 | None:intergenic |
| TGATTCGATCGATGGATTGC+AGG | 0.471350 | 3.3:+95690594 | MS.gene063102:CDS |
| AATTTGAAAATGGAAAGGTT+AGG | 0.473595 | 3.3:+95688602 | None:intergenic |
| GAAGATGAAAATGCTTCTGT+TGG | 0.479184 | 3.3:+95688730 | MS.gene063102:CDS |
| TACCTTGAAGCAGCAGGTGC+AGG | 0.480680 | 3.3:+95688953 | MS.gene063102:CDS |
| GCAACAGAGTGAAGAAAGGA+AGG | 0.481758 | 3.3:-95689220 | None:intergenic |
| GGCAATTGAAGACACAAATC+AGG | 0.483604 | 3.3:+95689965 | MS.gene063102:CDS |
| CAGTCACCGAAATCGATAAT+CGG | 0.485524 | 3.3:+95688708 | MS.gene063102:CDS |
| GATGCTCGGAATAACCTTGT+AGG | 0.496320 | 3.3:+95689196 | MS.gene063102:CDS |
| TCTGGCATACAAATAGAATT+GGG | 0.497185 | 3.3:-95689924 | None:intergenic |
| TACTACTGTTGTTGTTGTTG+AGG | 0.498274 | 3.3:+95689779 | MS.gene063102:CDS |
| ATATTCTGTCAACTGCTTGG+AGG | 0.502799 | 3.3:-95689000 | None:intergenic |
| CTATTTGGTTTCATCAAGCT+AGG | 0.506498 | 3.3:-95690110 | None:intergenic |
| AAGTACATACAGTTTAATTC+CGG | 0.506549 | 3.3:-95690764 | None:intergenic |
| GGTTTGAAGGGTTTGAAGAA+GGG | 0.508920 | 3.3:-95688850 | None:intergenic |
| ATGAAAATGCTTCTGTTGGA+AGG | 0.511456 | 3.3:+95688734 | MS.gene063102:CDS |
| TTGTCTTTGTCGAGTTCCAT+CGG | 0.512658 | 3.3:-95689732 | None:intergenic |
| CCAAAGCATCTATCGATGAA+TGG | 0.516478 | 3.3:+95688777 | MS.gene063102:CDS |
| TGAAAAGGGAAGCATCGATT+CGG | 0.518415 | 3.3:-95689093 | None:intergenic |
| AGCAGCAACAGAGTGAAGAA+AGG | 0.532298 | 3.3:-95689224 | None:intergenic |
| CATGTATCGTGAGTTGAAAA+GGG | 0.536326 | 3.3:-95689107 | None:intergenic |
| TAGTGGGATGATTCGATCGA+TGG | 0.537188 | 3.3:+95690586 | MS.gene063102:intron |
| GATTGCAGGCAGGAACATCA+AGG | 0.543132 | 3.3:+95690608 | MS.gene063102:CDS |
| TTCACTTAAATGCAATTCTG+TGG | 0.545122 | 3.3:+95689872 | MS.gene063102:CDS |
| TCGATCGATGGATTGCAGGC+AGG | 0.547141 | 3.3:+95690598 | MS.gene063102:CDS |
| TTTGGTTCATACTCCTTCAA+CGG | 0.551515 | 3.3:-95690679 | None:intergenic |
| GGTTTGAAGAAGGGTTTGAA+GGG | 0.554124 | 3.3:-95688862 | None:intergenic |
| AAAATGGAGTCAATGGGAAG+AGG | 0.556320 | 3.3:+95690729 | MS.gene063102:CDS |
| ATTTAGGCAAGCATGTGGGT+TGG | 0.556821 | 3.3:-95690027 | None:intergenic |
| AAAGGAATTTGAAAATGGAA+AGG | 0.559315 | 3.3:+95688597 | None:intergenic |
| GAACCGTAGGTTTCAAAACC+TGG | 0.560313 | 3.3:+95689024 | MS.gene063102:CDS |
| ATGATGAACATCACTTTGAT+GGG | 0.562151 | 3.3:-95690087 | None:intergenic |
| GAAGAGGATAATCTAAGGAC+CGG | 0.564580 | 3.3:+95690745 | MS.gene063102:CDS |
| GTTAACGAGGCCCAAAAGAA+CGG | 0.567267 | 3.3:+95689846 | MS.gene063102:CDS |
| GAAGAAAGGAAGGGCCTACA+AGG | 0.570430 | 3.3:-95689210 | None:intergenic |
| CTTCATTGTCTGATACCAGA+AGG | 0.585689 | 3.3:+95689140 | MS.gene063102:CDS |
| AACTCGACAAAGACAATGGA+AGG | 0.587275 | 3.3:+95689739 | MS.gene063102:CDS |
| CAATGGAAGGCTTAAAGGCA+AGG | 0.588132 | 3.3:+95689752 | MS.gene063102:CDS |
| TTGCTGTGGAATGTACCGTT+AGG | 0.589094 | 3.3:+95688930 | MS.gene063102:CDS |
| TTCATGGCATCGCTAATAGG+TGG | 0.591268 | 3.3:-95688890 | None:intergenic |
| AGGTTGATTTGAAAGACAAG+TGG | 0.593616 | 3.3:+95691259 | MS.gene063102:intron |
| TTGACAGAATATGGAACCGT+AGG | 0.599653 | 3.3:+95689011 | MS.gene063102:CDS |
| TGACTCTTTGCCAGTTAACG+AGG | 0.601690 | 3.3:+95689833 | MS.gene063102:CDS |
| TGCTTATGTCTACATTGCTG+TGG | 0.602167 | 3.3:+95688916 | MS.gene063102:CDS |
| TTAACATTTAGGCAAGCATG+TGG | 0.604145 | 3.3:-95690032 | None:intergenic |
| CTTGAAGCAGCAGGTGCAGG+TGG | 0.604795 | 3.3:+95688956 | MS.gene063102:CDS |
| ATTGCAGGCAGGAACATCAA+GGG | 0.616311 | 3.3:+95690609 | MS.gene063102:CDS |
| GTTAGGTACCTTGAAGCAGC+AGG | 0.617125 | 3.3:+95688947 | MS.gene063102:CDS |
| ATTATCGATTTCGGTGACTG+AGG | 0.617150 | 3.3:-95688705 | None:intergenic |
| ATGGAACTCGACAAAGACAA+TGG | 0.617169 | 3.3:+95689735 | MS.gene063102:CDS |
| TCTCATATTAGAGACTCCGA+TGG | 0.618845 | 3.3:+95689716 | MS.gene063102:intron |
| TGAAAATGGAAAGGTTAGGG+TGG | 0.628807 | 3.3:+95688606 | None:intergenic |
| CCTAAATGTTAACAATGATG+AGG | 0.630277 | 3.3:+95690043 | MS.gene063102:CDS |
| TGCTGCTTCAAGGTACCTAA+CGG | 0.634086 | 3.3:-95688945 | None:intergenic |
| ATACAAATAGAATTGGGCAC+AGG | 0.635848 | 3.3:-95689918 | None:intergenic |
| ATGGATGCTTGAACTTCTCG+AGG | 0.640307 | 3.3:+95688796 | MS.gene063102:CDS |
| TTGCAGGCAGGAACATCAAG+GGG | 0.642905 | 3.3:+95690610 | MS.gene063102:CDS |
| TTCGTTTGCGTAGTCCAGAG+AGG | 0.651598 | 3.3:+95690644 | MS.gene063102:CDS |
| CAACAGAGTGAAGAAAGGAA+GGG | 0.656227 | 3.3:-95689219 | None:intergenic |
| CGTAGGTTTCAAAACCTGGA+GGG | 0.661614 | 3.3:+95689028 | MS.gene063102:CDS |
| CAGAAGGAAAGCCATTCAAG+AGG | 0.668057 | 3.3:+95689156 | MS.gene063102:CDS |
| TAACATTTAGGCAAGCATGT+GGG | 0.675244 | 3.3:-95690031 | None:intergenic |
| ACAAGTGGAGAAATTTGAAG+CGG | 0.678726 | 3.3:+95691274 | MS.gene063102:CDS |
| AGACATTGTAAGGTCTGATG+TGG | 0.687030 | 3.3:+95689944 | MS.gene063102:CDS |
| CCGTAGGTTTCAAAACCTGG+AGG | 0.690526 | 3.3:+95689027 | MS.gene063102:CDS |
| TAGTTCTGCTCGTACTCACG+AGG | 0.692042 | 3.3:+95690130 | MS.gene063102:CDS |
| TGATGAGGCCAATCTTACGA+AGG | 0.699645 | 3.3:+95690058 | MS.gene063102:CDS |
| TAACGAGGCCCAAAAGAACG+GGG | 0.712659 | 3.3:+95689848 | MS.gene063102:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTTGAATAGTAAAA+TGG | - | chr3.3:95690998-95691017 | None:intergenic | 10.0% |
| !! | TAAAATAAGCAATAAAATCA+AGG | - | chr3.3:95690564-95690583 | None:intergenic | 15.0% |
| !!! | TTTGTAATTTTTTGTATTTC+TGG | + | chr3.3:95690162-95690181 | MS.gene063102:intron | 15.0% |
| !! | AAAAACTACTTCTAATTGAT+TGG | + | chr3.3:95688825-95688844 | MS.gene063102:CDS | 20.0% |
| !! | AAAAATGTATGACAAAGTAA+AGG | - | chr3.3:95690887-95690906 | None:intergenic | 20.0% |
| !! | AAAACTACTTCTAATTGATT+GGG | + | chr3.3:95688826-95688845 | MS.gene063102:CDS | 20.0% |
| !! | AAAGGAGAAAGAAAAAAAAA+TGG | + | chr3.3:95690713-95690732 | MS.gene063102:CDS | 20.0% |
| !! | AAATATTATAGCAACTTGAT+TGG | - | chr3.3:95690797-95690816 | None:intergenic | 20.0% |
| !! | AACCAAAAAATATTACGAAA+AGG | + | chr3.3:95690695-95690714 | MS.gene063102:CDS | 20.0% |
| !! | AATTGAAGCATAAATAGTTA+GGG | - | chr3.3:95691023-95691042 | None:intergenic | 20.0% |
| !!! | ATACAATGTTTTTTCGTTTT+TGG | + | chr3.3:95690834-95690853 | MS.gene063102:intron | 20.0% |
| !!! | CTTTTTTCTTTTTTCAGAAT+TGG | + | chr3.3:95691108-95691127 | MS.gene063102:intron | 20.0% |
| !!! | TATTGCTTATTTTATGTAGT+GGG | + | chr3.3:95690570-95690589 | MS.gene063102:intron | 20.0% |
| !!! | TGAATCAAATTTTGTTTATC+AGG | + | chr3.3:95691239-95691258 | MS.gene063102:intron | 20.0% |
| !!! | TTATTGCTTATTTTATGTAG+TGG | + | chr3.3:95690569-95690588 | MS.gene063102:intron | 20.0% |
| !!! | TTTTTAGAGTAAAAAGGAAT+GGG | - | chr3.3:95690476-95690495 | None:intergenic | 20.0% |
| ! | AAACAACAACAACAGAAAAA+AGG | - | chr3.3:95689299-95689318 | None:intergenic | 25.0% |
| ! | AAAGAAATAACCAACCATTA+TGG | - | chr3.3:95689273-95689292 | None:intergenic | 25.0% |
| ! | AAAGTAAAGGTAAAAGCAAA+AGG | - | chr3.3:95690874-95690893 | None:intergenic | 25.0% |
| ! | AACAACAACAACAGAAAAAA+GGG | - | chr3.3:95689298-95689317 | None:intergenic | 25.0% |
| ! | AAGAAATAACCAACCATTAT+GGG | - | chr3.3:95689272-95689291 | None:intergenic | 25.0% |
| ! | AAGTACATACAGTTTAATTC+CGG | - | chr3.3:95690767-95690786 | None:intergenic | 25.0% |
| ! | AATTTCATTGCAAAATGCAT+AGG | + | chr3.3:95689547-95689566 | MS.gene063102:intron | 25.0% |
| ! | AGAAAAAAAAATGGAGTCAA+TGG | + | chr3.3:95690722-95690741 | MS.gene063102:CDS | 25.0% |
| ! | AGAACAAAAAATTACAAGCA+TGG | - | chr3.3:95690534-95690553 | None:intergenic | 25.0% |
| ! | ATTTCATTGCAAAATGCATA+GGG | + | chr3.3:95689548-95689567 | MS.gene063102:intron | 25.0% |
| ! | CAATTGAAGCATAAATAGTT+AGG | - | chr3.3:95691024-95691043 | None:intergenic | 25.0% |
| ! | GAAAAAAAAATGGAGTCAAT+GGG | + | chr3.3:95690723-95690742 | MS.gene063102:CDS | 25.0% |
| ! | TTGCAATTTATCTGCATTTA+GGG | - | chr3.3:95690252-95690271 | None:intergenic | 25.0% |
| ! | TTTGCAATTTATCTGCATTT+AGG | - | chr3.3:95690253-95690272 | None:intergenic | 25.0% |
| !! | AACAGGTATTTTTCATAACT+CGG | - | chr3.3:95689657-95689676 | None:intergenic | 25.0% |
| !! | CTCCTTTTCGTAATATTTTT+TGG | - | chr3.3:95690700-95690719 | None:intergenic | 25.0% |
| !!! | AAAAGTTCTAAAAAGCAAAC+AGG | - | chr3.3:95689674-95689693 | None:intergenic | 25.0% |
| !!! | CTAGTGTTTTTAGAGTAAAA+AGG | - | chr3.3:95690482-95690501 | None:intergenic | 25.0% |
| !!! | GTTTTTAGAGTAAAAAGGAA+TGG | - | chr3.3:95690477-95690496 | None:intergenic | 25.0% |
| !!! | TCTGTTGTTGTTGTTTATTA+CGG | + | chr3.3:95689303-95689322 | MS.gene063102:intron | 25.0% |
| AAAAAGTTGAACCTCTTGAA+TGG | - | chr3.3:95689170-95689189 | None:intergenic | 30.0% | |
| AAAATCAATCCCATAATGGT+TGG | + | chr3.3:95689260-95689279 | MS.gene063102:intron | 30.0% | |
| AACTGAAGTAAGTCTAGTAA+AGG | + | chr3.3:95691179-95691198 | MS.gene063102:intron | 30.0% | |
| AAGCAATAAAATCAAGGCAT+CGG | - | chr3.3:95690558-95690577 | None:intergenic | 30.0% | |
| ACAACAACAACAGAAAAAAG+GGG | - | chr3.3:95689297-95689316 | None:intergenic | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | - | chr3.3:95690281-95690300 | None:intergenic | 30.0% | |
| ATGATGAACATCACTTTGAT+GGG | - | chr3.3:95690090-95690109 | None:intergenic | 30.0% | |
| CCTAAATGTTAACAATGATG+AGG | + | chr3.3:95690043-95690062 | MS.gene063102:CDS | 30.0% | |
| CCTCATCATTGTTAACATTT+AGG | - | chr3.3:95690046-95690065 | None:intergenic | 30.0% | |
| TAACTCCAAAATTGAGATTC+TGG | + | chr3.3:95689065-95689084 | MS.gene063102:CDS | 30.0% | |
| TATAGAGAGTGAGCATATTA+AGG | + | chr3.3:95688664-95688683 | MS.gene063102:CDS | 30.0% | |
| TCAGGGACTAAATTAACTAA+CGG | - | chr3.3:95690328-95690347 | None:intergenic | 30.0% | |
| TCTGGCATACAAATAGAATT+GGG | - | chr3.3:95689927-95689946 | None:intergenic | 30.0% | |
| TTCACTTAAATGCAATTCTG+TGG | + | chr3.3:95689872-95689891 | MS.gene063102:CDS | 30.0% | |
| TTGCATATTATCTGCATTCA+GGG | + | chr3.3:95690402-95690421 | MS.gene063102:intron | 30.0% | |
| TTTGCATATTATCTGCATTC+AGG | + | chr3.3:95690401-95690420 | MS.gene063102:intron | 30.0% | |
| ! | AGTAAGTCTAGTAAAGGTAT+TGG | + | chr3.3:95691185-95691204 | MS.gene063102:intron | 30.0% |
| ! | CTTTTCCAGAATCTCAATTT+TGG | - | chr3.3:95689073-95689092 | None:intergenic | 30.0% |
| !!! | ATTTCTGGTTGATTCCTTTT+TGG | + | chr3.3:95690177-95690196 | MS.gene063102:intron | 30.0% |
| !!! | TCAAGAGGTTCAACTTTTTT+TGG | + | chr3.3:95689171-95689190 | MS.gene063102:CDS | 30.0% |
| !!! | TCTTTTTTCAGAATTGGAGA+AGG | + | chr3.3:95691114-95691133 | MS.gene063102:intron | 30.0% |
| !!! | TTTCTGGTTGATTCCTTTTT+GGG | + | chr3.3:95690178-95690197 | MS.gene063102:intron | 30.0% |
| AAAGACAATGGAAGGCTTAA+AGG | + | chr3.3:95689747-95689766 | MS.gene063102:CDS | 35.0% | |
| AAGTGACTAATTCCCCAAAA+AGG | - | chr3.3:95690194-95690213 | None:intergenic | 35.0% | |
| AATGGGAAGAGGATAATCTA+AGG | + | chr3.3:95690740-95690759 | MS.gene063102:CDS | 35.0% | |
| ACAAGTGGAGAAATTTGAAG+CGG | + | chr3.3:95691274-95691293 | MS.gene063102:CDS | 35.0% | |
| ACTAACGAAGTCTACATTCA+GGG | - | chr3.3:95690345-95690364 | None:intergenic | 35.0% | |
| ATACAAATAGAATTGGGCAC+AGG | - | chr3.3:95689921-95689940 | None:intergenic | 35.0% | |
| ATGAAAATGCTTCTGTTGGA+AGG | + | chr3.3:95688734-95688753 | MS.gene063102:CDS | 35.0% | |
| ATGAAGCACAAGCACATATA+CGG | - | chr3.3:95689446-95689465 | None:intergenic | 35.0% | |
| CCTAACCAATGAATGATTCA+TGG | - | chr3.3:95689577-95689596 | None:intergenic | 35.0% | |
| GAAGATGAAAATGCTTCTGT+TGG | + | chr3.3:95688730-95688749 | MS.gene063102:CDS | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | - | chr3.3:95690282-95690301 | None:intergenic | 35.0% | |
| GATGATGAACATCACTTTGA+TGG | - | chr3.3:95690091-95690110 | None:intergenic | 35.0% | |
| GCTCAAAATCAATCCCATAA+TGG | + | chr3.3:95689256-95689275 | MS.gene063102:CDS | 35.0% | |
| GTACATTTGCATCTTTACTC+TGG | - | chr3.3:95690007-95690026 | None:intergenic | 35.0% | |
| GTAGACATAAGCAGATTTCA+TGG | - | chr3.3:95688909-95688928 | None:intergenic | 35.0% | |
| GTCTGGCATACAAATAGAAT+TGG | - | chr3.3:95689928-95689947 | None:intergenic | 35.0% | |
| TAACATTTAGGCAAGCATGT+GGG | - | chr3.3:95690034-95690053 | None:intergenic | 35.0% | |
| TATATGTGCTTGTGCTTCAT+AGG | + | chr3.3:95689446-95689465 | MS.gene063102:intron | 35.0% | |
| TCTCTCTCCCAAAGTATATA+AGG | - | chr3.3:95689528-95689547 | None:intergenic | 35.0% | |
| TTAACATTTAGGCAAGCATG+TGG | - | chr3.3:95690035-95690054 | None:intergenic | 35.0% | |
| TTTGTATGCCAGACATTGTA+AGG | + | chr3.3:95689934-95689953 | MS.gene063102:CDS | 35.0% | |
| ! | AGTGAGAGCCTTATATACTT+TGG | + | chr3.3:95689517-95689536 | MS.gene063102:intron | 35.0% |
| ! | CATGTATCGTGAGTTGAAAA+GGG | - | chr3.3:95689110-95689129 | None:intergenic | 35.0% |
| ! | CCATGAATCATTCATTGGTT+AGG | + | chr3.3:95689574-95689593 | MS.gene063102:intron | 35.0% |
| ! | CTATTTGGTTTCATCAAGCT+AGG | - | chr3.3:95690113-95690132 | None:intergenic | 35.0% |
| ! | GTGAGAGCCTTATATACTTT+GGG | + | chr3.3:95689518-95689537 | MS.gene063102:intron | 35.0% |
| ! | TACTACTGTTGTTGTTGTTG+AGG | + | chr3.3:95689779-95689798 | MS.gene063102:CDS | 35.0% |
| ! | TGTTGTTGTTGTTGAGGAAA+TGG | + | chr3.3:95689785-95689804 | MS.gene063102:CDS | 35.0% |
| ! | TTTGGTTCATACTCCTTCAA+CGG | - | chr3.3:95690682-95690701 | None:intergenic | 35.0% |
| !! | AGGTTGATTTGAAAGACAAG+TGG | + | chr3.3:95691259-95691278 | MS.gene063102:intron | 35.0% |
| !! | CATCTTCCGATTATCGATTT+CGG | - | chr3.3:95688717-95688736 | None:intergenic | 35.0% |
| !! | TTCTGGTTGATTCCTTTTTG+GGG | + | chr3.3:95690179-95690198 | MS.gene063102:intron | 35.0% |
| !!! | AACTTTTTTTGGAGGATGCT+CGG | + | chr3.3:95689182-95689201 | MS.gene063102:CDS | 35.0% |
| !!! | AGAGGTTCAACTTTTTTTGG+AGG | + | chr3.3:95689174-95689193 | MS.gene063102:CDS | 35.0% |
| !!! | TTACTCTGGTTTTCCATTTG+TGG | - | chr3.3:95689993-95690012 | None:intergenic | 35.0% |
| AAAATGGAGTCAATGGGAAG+AGG | + | chr3.3:95690729-95690748 | MS.gene063102:CDS | 40.0% | |
| AACTCGACAAAGACAATGGA+AGG | + | chr3.3:95689739-95689758 | MS.gene063102:CDS | 40.0% | |
| ACATCAGACCTTACAATGTC+TGG | - | chr3.3:95689945-95689964 | None:intergenic | 40.0% | |
| AGACATTGTAAGGTCTGATG+TGG | + | chr3.3:95689944-95689963 | MS.gene063102:CDS | 40.0% | |
| ATATTCTGTCAACTGCTTGG+AGG | - | chr3.3:95689003-95689022 | None:intergenic | 40.0% | |
| ATGGAACTCGACAAAGACAA+TGG | + | chr3.3:95689735-95689754 | MS.gene063102:CDS | 40.0% | |
| CAACAGAGTGAAGAAAGGAA+GGG | - | chr3.3:95689222-95689241 | None:intergenic | 40.0% | |
| CAGTCACCGAAATCGATAAT+CGG | + | chr3.3:95688708-95688727 | MS.gene063102:CDS | 40.0% | |
| CCATTCATCGATAGATGCTT+TGG | - | chr3.3:95688780-95688799 | None:intergenic | 40.0% | |
| CTTCATTGTCTGATACCAGA+AGG | + | chr3.3:95689140-95689159 | MS.gene063102:CDS | 40.0% | |
| GAAGAGGATAATCTAAGGAC+CGG | + | chr3.3:95690745-95690764 | MS.gene063102:CDS | 40.0% | |
| GACTAACGAAGTCTACATTC+AGG | - | chr3.3:95690346-95690365 | None:intergenic | 40.0% | |
| GATTTCATGGCATCGCTAAT+AGG | - | chr3.3:95688896-95688915 | None:intergenic | 40.0% | |
| GGCAATTGAAGACACAAATC+AGG | + | chr3.3:95689965-95689984 | MS.gene063102:CDS | 40.0% | |
| GGTAAAAGCAAAAGGAGATG+AGG | - | chr3.3:95690866-95690885 | None:intergenic | 40.0% | |
| GGTCTCCATGAATCATTCAT+TGG | + | chr3.3:95689569-95689588 | MS.gene063102:intron | 40.0% | |
| GGTTTGAAGAAGGGTTTGAA+GGG | - | chr3.3:95688865-95688884 | None:intergenic | 40.0% | |
| GGTTTGAAGGGTTTGAAGAA+GGG | - | chr3.3:95688853-95688872 | None:intergenic | 40.0% | |
| GTGTCAAGTCAACATTGTGT+CGG | - | chr3.3:95689382-95689401 | None:intergenic | 40.0% | |
| TCAGAATTGGAGAAGGAAAC+TGG | + | chr3.3:95691121-95691140 | MS.gene063102:intron | 40.0% | |
| TCCAAGCAGTTGACAGAATA+TGG | + | chr3.3:95689002-95689021 | MS.gene063102:CDS | 40.0% | |
| TCCATATTCTGTCAACTGCT+TGG | - | chr3.3:95689006-95689025 | None:intergenic | 40.0% | |
| TCTCATATTAGAGACTCCGA+TGG | + | chr3.3:95689716-95689735 | MS.gene063102:intron | 40.0% | |
| TGAGTACGAGCAGAACTATT+TGG | - | chr3.3:95690128-95690147 | None:intergenic | 40.0% | |
| TGCTTATGTCTACATTGCTG+TGG | + | chr3.3:95688916-95688935 | MS.gene063102:CDS | 40.0% | |
| TGGACAACAACTCATCTTCA+AGG | - | chr3.3:95688760-95688779 | None:intergenic | 40.0% | |
| TTGACAGAATATGGAACCGT+AGG | + | chr3.3:95689011-95689030 | MS.gene063102:CDS | 40.0% | |
| TTGTCTTTGTCGAGTTCCAT+CGG | - | chr3.3:95689735-95689754 | None:intergenic | 40.0% | |
| ! | AAGTGAATCCCCGTTCTTTT+GGG | - | chr3.3:95689859-95689878 | None:intergenic | 40.0% |
| ! | AGAGTCAATTTTGCTACAGC+TGG | - | chr3.3:95689820-95689839 | None:intergenic | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr3.3:95690206-95690225 | MS.gene063102:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr3.3:95690225-95690206 | None:intergenic | 40.0% |
| ! | ATAACTCGGAAAGCGTGAAT+GGG | - | chr3.3:95689643-95689662 | None:intergenic | 40.0% |
| ! | CCAAAGCATCTATCGATGAA+TGG | + | chr3.3:95688777-95688796 | MS.gene063102:CDS | 40.0% |
| ! | GCATGTATCGTGAGTTGAAA+AGG | - | chr3.3:95689111-95689130 | None:intergenic | 40.0% |
| ! | TAAGTGAATCCCCGTTCTTT+TGG | - | chr3.3:95689860-95689879 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr3.3:95690205-95690224 | MS.gene063102:intron | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr3.3:95690224-95690205 | None:intergenic | 40.0% |
| ! | TGGTGTTTGGAATTCGTTCT+TGG | + | chr3.3:95688626-95688645 | MS.gene063102:CDS | 40.0% |
| !! | ATTATCGATTTCGGTGACTG+AGG | - | chr3.3:95688708-95688727 | None:intergenic | 40.0% |
| !! | CATCGCTAATAGGTGGATTA+GGG | - | chr3.3:95688886-95688905 | None:intergenic | 40.0% |
| !! | GATTGATTTTGAGCAGCAGA+AGG | - | chr3.3:95689250-95689269 | None:intergenic | 40.0% |
| !! | GTGGATTAGGGTTTGAAGAA+GGG | - | chr3.3:95688874-95688893 | None:intergenic | 40.0% |
| !! | TGAAAAGGGAAGCATCGATT+CGG | - | chr3.3:95689096-95689115 | None:intergenic | 40.0% |
| AACTAACGGAGTCTGCATTC+AGG | - | chr3.3:95690314-95690333 | None:intergenic | 45.0% | |
| ACTAACGGAGTCTGCATTCA+GGG | - | chr3.3:95690313-95690332 | None:intergenic | 45.0% | |
| ACTGCTTGGAGGTAGTGTTT+AGG | - | chr3.3:95688992-95689011 | None:intergenic | 45.0% | |
| AGCAGCAACAGAGTGAAGAA+AGG | - | chr3.3:95689227-95689246 | None:intergenic | 45.0% | |
| ATGGATGCTTGAACTTCTCG+AGG | + | chr3.3:95688796-95688815 | MS.gene063102:CDS | 45.0% | |
| ATTGCAGGCAGGAACATCAA+GGG | + | chr3.3:95690609-95690628 | MS.gene063102:CDS | 45.0% | |
| ATTTAGGCAAGCATGTGGGT+TGG | - | chr3.3:95690030-95690049 | None:intergenic | 45.0% | |
| CAATGGAAGGCTTAAAGGCA+AGG | + | chr3.3:95689752-95689771 | MS.gene063102:CDS | 45.0% | |
| CACAAATCAGGAGCCACAAA+TGG | + | chr3.3:95689977-95689996 | MS.gene063102:CDS | 45.0% | |
| CAGAAGGAAAGCCATTCAAG+AGG | + | chr3.3:95689156-95689175 | MS.gene063102:CDS | 45.0% | |
| CGTAGGTTTCAAAACCTGGA+GGG | + | chr3.3:95689028-95689047 | MS.gene063102:CDS | 45.0% | |
| CTCTTGAATGGCTTTCCTTC+TGG | - | chr3.3:95689158-95689177 | None:intergenic | 45.0% | |
| CTGCTTGGAGGTAGTGTTTA+GGG | - | chr3.3:95688991-95689010 | None:intergenic | 45.0% | |
| GAACCGTAGGTTTCAAAACC+TGG | + | chr3.3:95689024-95689043 | MS.gene063102:CDS | 45.0% | |
| GAAGAAGCTTTCTCCGTTGA+AGG | + | chr3.3:95690666-95690685 | MS.gene063102:CDS | 45.0% | |
| GACAAATCGTTCCCCATTCA+GGG | + | chr3.3:95690433-95690452 | MS.gene063102:intron | 45.0% | |
| GACGAATCGTTTCCCATTCA+GGG | - | chr3.3:95690221-95690240 | None:intergenic | 45.0% | |
| GATGCTCGGAATAACCTTGT+AGG | + | chr3.3:95689196-95689215 | MS.gene063102:CDS | 45.0% | |
| GCAAATAACTTCTTCCCTCC+AGG | - | chr3.3:95689045-95689064 | None:intergenic | 45.0% | |
| GCAACAGAGTGAAGAAAGGA+AGG | - | chr3.3:95689223-95689242 | None:intergenic | 45.0% | |
| GGAAGTTGCCTTCGTAAGAT+TGG | - | chr3.3:95690069-95690088 | None:intergenic | 45.0% | |
| GGGTTTGAAGAAGGGTTTGA+AGG | - | chr3.3:95688866-95688885 | None:intergenic | 45.0% | |
| GGGTTTGAAGGGTTTGAAGA+AGG | - | chr3.3:95688854-95688873 | None:intergenic | 45.0% | |
| GTTAACGAGGCCCAAAAGAA+CGG | + | chr3.3:95689846-95689865 | MS.gene063102:CDS | 45.0% | |
| TAGTGGGATGATTCGATCGA+TGG | + | chr3.3:95690586-95690605 | MS.gene063102:intron | 45.0% | |
| TATGCAAAACAGTCCCTGCA+TGG | - | chr3.3:95690389-95690408 | None:intergenic | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | + | chr3.3:95690373-95690392 | MS.gene063102:intron | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | - | chr3.3:95690377-95690396 | None:intergenic | 45.0% | |
| TGACAAATCGTTCCCCATTC+AGG | + | chr3.3:95690432-95690451 | MS.gene063102:intron | 45.0% | |
| TGACGAATCGTTTCCCATTC+AGG | - | chr3.3:95690222-95690241 | None:intergenic | 45.0% | |
| TGACTCTTTGCCAGTTAACG+AGG | + | chr3.3:95689833-95689852 | MS.gene063102:CDS | 45.0% | |
| TGATGAGGCCAATCTTACGA+AGG | + | chr3.3:95690058-95690077 | MS.gene063102:CDS | 45.0% | |
| TTAACGAGGCCCAAAAGAAC+GGG | + | chr3.3:95689847-95689866 | MS.gene063102:CDS | 45.0% | |
| TTCATGGCATCGCTAATAGG+TGG | - | chr3.3:95688893-95688912 | None:intergenic | 45.0% | |
| TTGCTGTGGAATGTACCGTT+AGG | + | chr3.3:95688930-95688949 | MS.gene063102:CDS | 45.0% | |
| TTTAGGCAAGCATGTGGGTT+GGG | - | chr3.3:95690029-95690048 | None:intergenic | 45.0% | |
| ! | CATAACTCGGAAAGCGTGAA+TGG | - | chr3.3:95689644-95689663 | None:intergenic | 45.0% |
| ! | GCATCGCTAATAGGTGGATT+AGG | - | chr3.3:95688887-95688906 | None:intergenic | 45.0% |
| ! | GTCACTTTAGTCCCTGAATG+GGG | - | chr3.3:95690226-95690207 | None:intergenic | 45.0% |
| ! | TAACTCGGAAAGCGTGAATG+GGG | - | chr3.3:95689642-95689661 | None:intergenic | 45.0% |
| ! | TGCTGCTTCAAGGTACCTAA+CGG | - | chr3.3:95688948-95688967 | None:intergenic | 45.0% |
| ! | TGGAGAAATTTGAAGCGGTC+TGG | + | chr3.3:95691279-95691298 | MS.gene063102:CDS | 45.0% |
| ! | TTCTTTTGGGCCTCGTTAAC+TGG | - | chr3.3:95689846-95689865 | None:intergenic | 45.0% |
| !! | GGTGGATTAGGGTTTGAAGA+AGG | - | chr3.3:95688875-95688894 | None:intergenic | 45.0% |
| !! | TGATTCGATCGATGGATTGC+AGG | + | chr3.3:95690594-95690613 | MS.gene063102:CDS | 45.0% |
| !!! | CCTCCAGGTTTTGAAACCTA+CGG | - | chr3.3:95689030-95689049 | None:intergenic | 45.0% |
| AAAGCGTGAATGGGGGATTC+AGG | - | chr3.3:95689634-95689653 | None:intergenic | 50.0% | |
| AAGCGTGAATGGGGGATTCA+GGG | - | chr3.3:95689633-95689652 | None:intergenic | 50.0% | |
| CCGTAGGTTTCAAAACCTGG+AGG | + | chr3.3:95689027-95689046 | MS.gene063102:CDS | 50.0% | |
| GAAGAAAGGAAGGGCCTACA+AGG | - | chr3.3:95689213-95689232 | None:intergenic | 50.0% | |
| GATTGCAGGCAGGAACATCA+AGG | + | chr3.3:95690608-95690627 | MS.gene063102:CDS | 50.0% | |
| GGAAAGGTTAGGGTGGTGTT+TGG | + | chr3.3:95688613-95688632 | MS.gene063102:CDS | 50.0% | |
| GGAGAAAGCTTCTTCCTCTC+TGG | - | chr3.3:95690661-95690680 | None:intergenic | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | + | chr3.3:95690372-95690391 | MS.gene063102:intron | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | - | chr3.3:95690378-95690397 | None:intergenic | 50.0% | |
| GTTAGGTACCTTGAAGCAGC+AGG | + | chr3.3:95688947-95688966 | MS.gene063102:CDS | 50.0% | |
| TAACGAGGCCCAAAAGAACG+GGG | + | chr3.3:95689848-95689867 | MS.gene063102:CDS | 50.0% | |
| TTCGTTTGCGTAGTCCAGAG+AGG | + | chr3.3:95690644-95690663 | MS.gene063102:CDS | 50.0% | |
| TTGCAGGCAGGAACATCAAG+GGG | + | chr3.3:95690610-95690629 | MS.gene063102:CDS | 50.0% | |
| ! | AACTCGGAAAGCGTGAATGG+GGG | - | chr3.3:95689641-95689660 | None:intergenic | 50.0% |
| ! | TAGTTCTGCTCGTACTCACG+AGG | + | chr3.3:95690130-95690149 | MS.gene063102:CDS | 50.0% |
| !! | CATTGTGTCGGTGTCAGACA+TGG | - | chr3.3:95689370-95689389 | None:intergenic | 50.0% |
| TACCTTGAAGCAGCAGGTGC+AGG | + | chr3.3:95688953-95688972 | MS.gene063102:CDS | 55.0% | |
| !! | TCGATCGATGGATTGCAGGC+AGG | + | chr3.3:95690598-95690617 | MS.gene063102:CDS | 55.0% |
| CGTGAATGGGGGATTCAGGG+AGG | - | chr3.3:95689630-95689649 | None:intergenic | 60.0% | |
| CTTGAAGCAGCAGGTGCAGG+TGG | + | chr3.3:95688956-95688975 | MS.gene063102:CDS | 60.0% | |
| ! | CACCTGCACCTGCTGCTTCA+AGG | - | chr3.3:95688958-95688977 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 95688611 | 95691311 | 95688611 | ID=MS.gene063102 |
| chr3.3 | mRNA | 95688611 | 95691311 | 95688611 | ID=MS.gene063102.t1;Parent=MS.gene063102 |
| chr3.3 | exon | 95688611 | 95689277 | 95688611 | ID=MS.gene063102.t1.exon1;Parent=MS.gene063102.t1 |
| chr3.3 | CDS | 95688611 | 95689277 | 95688611 | ID=cds.MS.gene063102.t1;Parent=MS.gene063102.t1 |
| chr3.3 | exon | 95689727 | 95690151 | 95689727 | ID=MS.gene063102.t1.exon2;Parent=MS.gene063102.t1 |
| chr3.3 | CDS | 95689727 | 95690151 | 95689727 | ID=cds.MS.gene063102.t1;Parent=MS.gene063102.t1 |
| chr3.3 | exon | 95690589 | 95690776 | 95690589 | ID=MS.gene063102.t1.exon3;Parent=MS.gene063102.t1 |
| chr3.3 | CDS | 95690589 | 95690776 | 95690589 | ID=cds.MS.gene063102.t1;Parent=MS.gene063102.t1 |
| chr3.3 | exon | 95691125 | 95691185 | 95691125 | ID=MS.gene063102.t1.exon4;Parent=MS.gene063102.t1 |
| chr3.3 | CDS | 95691125 | 95691185 | 95691125 | ID=cds.MS.gene063102.t1;Parent=MS.gene063102.t1 |
| chr3.3 | exon | 95691261 | 95691311 | 95691261 | ID=MS.gene063102.t1.exon5;Parent=MS.gene063102.t1 |
| chr3.3 | CDS | 95691261 | 95691311 | 95691261 | ID=cds.MS.gene063102.t1;Parent=MS.gene063102.t1 |
| Gene Sequence |
| Protein sequence |
