Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063133.t1 | ADD09572.1 | 84.9 | 285 | 33 | 5 | 1 | 277 | 1 | 283 | 1.00E-128 | 469.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063133.t1 | Q9LQZ7 | 47.7 | 218 | 102 | 4 | 1 | 206 | 1 | 218 | 8.6e-47 | 188.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063133.t1 | D3YBC1 | 84.9 | 285 | 33 | 5 | 1 | 277 | 1 | 283 | 7.5e-129 | 469.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene063133.t1 | TF | DBB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063133.t1 | MTR_3g117320 | 94.907 | 216 | 9 | 1 | 1 | 214 | 1 | 216 | 2.88e-153 | 427 |
| MS.gene063133.t1 | MTR_4g071200 | 54.667 | 225 | 87 | 5 | 1 | 218 | 1 | 217 | 9.62e-73 | 223 |
| MS.gene063133.t1 | MTR_3g113070 | 50.746 | 201 | 53 | 4 | 1 | 198 | 1 | 158 | 2.59e-59 | 188 |
| MS.gene063133.t1 | MTR_1g023260 | 50.515 | 194 | 85 | 3 | 1 | 194 | 1 | 183 | 9.38e-55 | 176 |
| MS.gene063133.t1 | MTR_1g023260 | 49.254 | 201 | 91 | 3 | 1 | 201 | 1 | 190 | 1.42e-54 | 178 |
| MS.gene063133.t1 | MTR_2g073370 | 55.738 | 122 | 53 | 1 | 1 | 122 | 1 | 121 | 1.68e-39 | 139 |
| MS.gene063133.t1 | MTR_4g067320 | 53.774 | 106 | 48 | 1 | 1 | 106 | 1 | 105 | 1.94e-34 | 125 |
| MS.gene063133.t1 | MTR_4g067320 | 49.206 | 126 | 60 | 3 | 1 | 125 | 1 | 123 | 2.10e-34 | 124 |
| MS.gene063133.t1 | MTR_2g099010 | 52.294 | 109 | 51 | 1 | 1 | 109 | 1 | 108 | 4.52e-33 | 121 |
| MS.gene063133.t1 | MTR_2g099010 | 52.294 | 109 | 51 | 1 | 1 | 109 | 1 | 108 | 5.21e-33 | 121 |
| MS.gene063133.t1 | MTR_5g021580 | 36.429 | 140 | 79 | 3 | 1 | 134 | 1 | 136 | 2.74e-23 | 94.4 |
| MS.gene063133.t1 | MTR_5g021580 | 36.429 | 140 | 79 | 3 | 1 | 134 | 1 | 136 | 3.29e-23 | 94.0 |
| MS.gene063133.t1 | MTR_1g023260 | 41.606 | 137 | 69 | 3 | 65 | 201 | 57 | 182 | 3.37e-20 | 87.8 |
| MS.gene063133.t1 | MTR_1g013450 | 40.206 | 97 | 48 | 1 | 5 | 101 | 6 | 92 | 2.51e-17 | 80.5 |
| MS.gene063133.t1 | MTR_3g105710 | 37.113 | 97 | 51 | 1 | 5 | 101 | 6 | 92 | 1.09e-15 | 75.9 |
| MS.gene063133.t1 | MTR_4g128930 | 39.785 | 93 | 46 | 1 | 5 | 97 | 22 | 104 | 1.62e-15 | 75.9 |
| MS.gene063133.t1 | MTR_5g069480 | 30.769 | 195 | 103 | 8 | 1 | 176 | 1 | 182 | 2.74e-13 | 68.9 |
| MS.gene063133.t1 | MTR_7g018170 | 36.559 | 93 | 49 | 1 | 5 | 97 | 26 | 108 | 2.74e-13 | 69.7 |
| MS.gene063133.t1 | MTR_5g069480 | 30.769 | 195 | 103 | 8 | 1 | 176 | 1 | 182 | 4.22e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063133.t1 | AT1G75540 | 49.083 | 218 | 99 | 4 | 1 | 206 | 1 | 218 | 1.82e-60 | 195 |
| MS.gene063133.t1 | AT4G39070 | 55.000 | 200 | 74 | 5 | 1 | 184 | 1 | 200 | 1.47e-55 | 179 |
| MS.gene063133.t1 | AT1G06040 | 52.206 | 136 | 62 | 2 | 1 | 136 | 1 | 133 | 7.65e-40 | 137 |
| MS.gene063133.t1 | AT1G78600 | 54.237 | 118 | 53 | 1 | 1 | 118 | 1 | 117 | 1.09e-38 | 137 |
| MS.gene063133.t1 | AT1G06040 | 52.206 | 136 | 62 | 2 | 1 | 136 | 1 | 133 | 1.67e-38 | 135 |
| MS.gene063133.t1 | AT1G78600 | 54.237 | 118 | 53 | 1 | 1 | 118 | 1 | 117 | 1.87e-38 | 137 |
| MS.gene063133.t1 | AT4G10240 | 51.799 | 139 | 57 | 3 | 1 | 133 | 1 | 135 | 5.81e-38 | 131 |
| MS.gene063133.t1 | AT2G31380 | 48.092 | 131 | 67 | 1 | 1 | 131 | 1 | 130 | 2.30e-35 | 127 |
| MS.gene063133.t1 | AT4G38960 | 39.316 | 117 | 67 | 2 | 1 | 117 | 1 | 113 | 4.33e-23 | 93.6 |
| MS.gene063133.t1 | AT4G38960 | 39.316 | 117 | 67 | 2 | 1 | 117 | 1 | 113 | 4.33e-23 | 93.6 |
| MS.gene063133.t1 | AT2G21320 | 44.000 | 100 | 52 | 2 | 1 | 100 | 1 | 96 | 3.82e-22 | 90.9 |
| MS.gene063133.t1 | AT2G24790 | 39.785 | 93 | 46 | 1 | 5 | 97 | 8 | 90 | 6.02e-17 | 78.2 |
| MS.gene063133.t1 | AT2G24790 | 38.144 | 97 | 50 | 1 | 5 | 101 | 8 | 94 | 2.08e-16 | 77.8 |
| MS.gene063133.t1 | AT5G24930 | 36.082 | 97 | 52 | 1 | 5 | 101 | 6 | 92 | 1.44e-15 | 76.3 |
| MS.gene063133.t1 | AT4G38960 | 28.750 | 160 | 67 | 3 | 1 | 117 | 1 | 156 | 2.95e-15 | 73.6 |
| MS.gene063133.t1 | AT5G15850 | 32.787 | 122 | 71 | 2 | 5 | 125 | 12 | 123 | 2.99e-14 | 72.4 |
| MS.gene063133.t1 | AT3G02380 | 34.286 | 105 | 57 | 2 | 5 | 109 | 16 | 108 | 2.25e-13 | 69.7 |
| MS.gene063133.t1 | AT2G47890 | 35.593 | 118 | 55 | 3 | 5 | 111 | 13 | 120 | 2.77e-12 | 65.5 |
| MS.gene063133.t1 | AT5G15840 | 31.132 | 106 | 61 | 2 | 5 | 110 | 20 | 113 | 4.63e-12 | 65.9 |
| MS.gene063133.t1 | AT2G47890 | 41.176 | 85 | 40 | 2 | 5 | 89 | 13 | 87 | 4.99e-12 | 65.5 |
| MS.gene063133.t1 | AT1G28050 | 34.653 | 101 | 56 | 1 | 2 | 102 | 6 | 96 | 5.26e-12 | 65.9 |
| MS.gene063133.t1 | AT5G15840 | 31.132 | 106 | 61 | 2 | 5 | 110 | 20 | 113 | 5.54e-12 | 65.1 |
| MS.gene063133.t1 | AT2G47890 | 41.176 | 85 | 40 | 2 | 5 | 89 | 13 | 87 | 5.75e-12 | 65.5 |
| MS.gene063133.t1 | AT2G33500 | 33.000 | 100 | 57 | 1 | 3 | 102 | 10 | 99 | 8.60e-12 | 65.1 |
| MS.gene063133.t1 | AT2G33500 | 33.000 | 100 | 57 | 1 | 3 | 102 | 10 | 99 | 8.70e-12 | 65.1 |
Find 50 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTATGGCTGTACAGTTTC+AGG | 0.212421 | 3.4:+99701573 | MS.gene063133:CDS |
| GATCTACTAGAGTAGTTTCT+TGG | 0.265361 | 3.4:-99700788 | None:intergenic |
| GAAGCTTTCAAGCAATTCTT+TGG | 0.294858 | 3.4:+99700730 | MS.gene063133:CDS |
| ACTTCAAAATGGAAAGATTA+TGG | 0.301261 | 3.4:+99701558 | MS.gene063133:CDS |
| GATGCTTCTTTCCCACCTAA+TGG | 0.309132 | 3.4:+99700971 | MS.gene063133:CDS |
| CAAAAGTGAACACTTCAAAA+TGG | 0.317889 | 3.4:+99701547 | MS.gene063133:CDS |
| ATAGAATCGCTCTATCTTCT+TGG | 0.325288 | 3.4:-99700631 | None:intergenic |
| CCCACCTAATGGTTTCTGTA+AGG | 0.391077 | 3.4:+99700982 | MS.gene063133:CDS |
| TAAACCTTACAGAAACCATT+AGG | 0.399460 | 3.4:-99700986 | None:intergenic |
| ACTTGTTAACATGAATATCT+TGG | 0.399770 | 3.4:-99701416 | None:intergenic |
| TCTTGGTTCAGAGCCAATAC+TGG | 0.403841 | 3.4:-99700771 | None:intergenic |
| GCAGAAGCAGAATCATTATT+CGG | 0.420688 | 3.4:+99701383 | MS.gene063133:intron |
| ATCACAAAGAGGGTAGTCTT+TGG | 0.421009 | 3.4:-99700416 | None:intergenic |
| ACCACTGAGCTAATATTAGA+AGG | 0.428353 | 3.4:-99701507 | None:intergenic |
| AACATACACAGAAACATAAC+AGG | 0.440782 | 3.4:+99700690 | MS.gene063133:CDS |
| CATAACAGGTTTCTTCTCTC+TGG | 0.447881 | 3.4:+99700704 | MS.gene063133:CDS |
| GTGTATGTTCATTTGCTCCA+TGG | 0.455691 | 3.4:-99700676 | None:intergenic |
| GTGTTTGGTTGCAAGCTTGT+TGG | 0.456215 | 3.4:-99700365 | None:intergenic |
| CATTTGCTCCATGGATTGGA+AGG | 0.479724 | 3.4:-99700667 | None:intergenic |
| ATACTGGTGGATGATGAATC+TGG | 0.490828 | 3.4:-99700755 | None:intergenic |
| GATTCATCATCCACCAGTAT+TGG | 0.497576 | 3.4:+99700758 | MS.gene063133:CDS |
| AACGTGTGTACCTCTAGCTC+AGG | 0.499247 | 3.4:+99701455 | MS.gene063133:CDS |
| TGTTCATTTGCTCCATGGAT+TGG | 0.505507 | 3.4:-99700671 | None:intergenic |
| GAATGTGACCTTCCAATCCA+TGG | 0.511555 | 3.4:+99700659 | MS.gene063133:CDS |
| GAGGGTAGTCTTTGGAGTTG+AGG | 0.523182 | 3.4:-99700408 | None:intergenic |
| GATGAAGCTGCTCTTTGCCA+TGG | 0.528890 | 3.4:+99700319 | MS.gene063133:CDS |
| GACAACATGGCTAGTGACAC+TGG | 0.532967 | 3.4:+99700875 | MS.gene063133:CDS |
| TCTAATATTAGCTCAGTGGT+TGG | 0.556823 | 3.4:+99701510 | MS.gene063133:CDS |
| AAATGCAAGTTCTTCTTGCA+TGG | 0.564285 | 3.4:+99700847 | MS.gene063133:CDS |
| GAGCTAATATTAGAAGGAGT+AGG | 0.569687 | 3.4:-99701501 | None:intergenic |
| CTTTCTCACACACATCACAT+TGG | 0.572968 | 3.4:-99700270 | None:intergenic |
| GCTGATTCAGCCTGAGCTAG+AGG | 0.574263 | 3.4:-99701465 | None:intergenic |
| TGGTTCAGAGCCAATACTGG+TGG | 0.580417 | 3.4:-99700768 | None:intergenic |
| TGGTTGCAAGCTTGTTGGCA+CGG | 0.580653 | 3.4:-99700360 | None:intergenic |
| GGTAGTCTTTGGAGTTGAGG+TGG | 0.585466 | 3.4:-99700405 | None:intergenic |
| TTCATCTGAAGGACAGAACA+TGG | 0.588007 | 3.4:-99700302 | None:intergenic |
| TACTTGATTGAAACAATACC+TGG | 0.589710 | 3.4:+99700926 | MS.gene063133:CDS |
| ACCTTACAGAAACCATTAGG+TGG | 0.591397 | 3.4:-99700983 | None:intergenic |
| CAAAGAGCAGCTTCATCTGA+AGG | 0.591587 | 3.4:-99700313 | None:intergenic |
| GGATTGTATGATCACATCCA+TGG | 0.608665 | 3.4:-99700336 | None:intergenic |
| TACTGGTGGATGATGAATCT+GGG | 0.618443 | 3.4:-99700754 | None:intergenic |
| TTGCATGGCTGAAGACAACA+TGG | 0.623591 | 3.4:+99700862 | MS.gene063133:CDS |
| CCTTACAGAAACCATTAGGT+GGG | 0.623605 | 3.4:-99700982 | None:intergenic |
| TCCTTCTAATATTAGCTCAG+TGG | 0.624133 | 3.4:+99701506 | MS.gene063133:CDS |
| CTTGACAGATATCACAAAGA+GGG | 0.634180 | 3.4:-99700426 | None:intergenic |
| AAGTCTTCAAAACAGTAACC+AGG | 0.647020 | 3.4:-99700944 | None:intergenic |
| AGAGGTACACACGTTACTTG+AGG | 0.647058 | 3.4:-99701447 | None:intergenic |
| ACTTGACAGATATCACAAAG+AGG | 0.665459 | 3.4:-99700427 | None:intergenic |
| TTGCAAGCTTGTTGGCACGG+TGG | 0.712576 | 3.4:-99700357 | None:intergenic |
| TGATGTGTGTGAGAAAGCTG+AGG | 0.739027 | 3.4:+99700276 | MS.gene063133:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTACAATATTTTTATAGAA+AGG | + | chr3.4:99701250-99701269 | MS.gene063133:intron | 10.0% |
| !! | CTTATAATAATAAATCTTCT+GGG | + | chr3.4:99701330-99701349 | MS.gene063133:intron | 15.0% |
| !! | TCTTATAATAATAAATCTTC+TGG | + | chr3.4:99701329-99701348 | MS.gene063133:intron | 15.0% |
| !!! | AGTAGATAATTTTTTTTTGA+AGG | - | chr3.4:99701077-99701096 | None:intergenic | 15.0% |
| !!! | GTAGATAATTTTTTTTTGAA+GGG | - | chr3.4:99701076-99701095 | None:intergenic | 15.0% |
| !! | TCAAAGAAAATTGATGTATT+TGG | - | chr3.4:99701178-99701197 | None:intergenic | 20.0% |
| !! | TCTAACAAAATTGATGTATT+TGG | + | chr3.4:99701139-99701158 | MS.gene063133:intron | 20.0% |
| !! | TGTTACAAAATATAAGCAAA+AGG | + | chr3.4:99701113-99701132 | MS.gene063133:intron | 20.0% |
| !!! | ACTTTTGTTTACATTTGTAA+GGG | + | chr3.4:99701201-99701220 | MS.gene063133:intron | 20.0% |
| !!! | ATGTGACTAATGTTTTAAAA+TGG | + | chr3.4:99700540-99700559 | MS.gene063133:intron | 20.0% |
| !!! | CCGTCATTTTTTTATAAAAA+CGG | + | chr3.4:99700459-99700478 | MS.gene063133:intron | 20.0% |
| !!! | CCGTTTTTATAAAAAAATGA+CGG | - | chr3.4:99700462-99700481 | None:intergenic | 20.0% |
| !!! | TACTTTTGTTTACATTTGTA+AGG | + | chr3.4:99701200-99701219 | MS.gene063133:intron | 20.0% |
| ! | ACTTCAAAATGGAAAGATTA+TGG | + | chr3.4:99701558-99701577 | MS.gene063133:CDS | 25.0% |
| !! | ACTTGTTAACATGAATATCT+TGG | - | chr3.4:99701419-99701438 | None:intergenic | 25.0% |
| !! | TTGCTTATATTTTGTAACAG+AGG | - | chr3.4:99701112-99701131 | None:intergenic | 25.0% |
| !! | TTTTCATTGGAAATTGATCT+TGG | - | chr3.4:99700830-99700849 | None:intergenic | 25.0% |
| !!! | TTTTTTTATAAAAACGGTCG+CGG | + | chr3.4:99700465-99700484 | MS.gene063133:intron | 25.0% |
| AACATACACAGAAACATAAC+AGG | + | chr3.4:99700690-99700709 | MS.gene063133:CDS | 30.0% | |
| CAAAAGTGAACACTTCAAAA+TGG | + | chr3.4:99701547-99701566 | MS.gene063133:CDS | 30.0% | |
| TAAACCTTACAGAAACCATT+AGG | - | chr3.4:99700989-99701008 | None:intergenic | 30.0% | |
| TACTTGATTGAAACAATACC+TGG | + | chr3.4:99700926-99700945 | MS.gene063133:CDS | 30.0% | |
| ! | AGAAGAACTTGCATTTTCAT+TGG | - | chr3.4:99700843-99700862 | None:intergenic | 30.0% |
| AAATGCAAGTTCTTCTTGCA+TGG | + | chr3.4:99700847-99700866 | MS.gene063133:CDS | 35.0% | |
| AAGAGAAAAACGAGTGTGTT+TGG | - | chr3.4:99700383-99700402 | None:intergenic | 35.0% | |
| AAGTCTTCAAAACAGTAACC+AGG | - | chr3.4:99700947-99700966 | None:intergenic | 35.0% | |
| ACCACTGAGCTAATATTAGA+AGG | - | chr3.4:99701510-99701529 | None:intergenic | 35.0% | |
| ACTTGACAGATATCACAAAG+AGG | - | chr3.4:99700430-99700449 | None:intergenic | 35.0% | |
| ATAGAATCGCTCTATCTTCT+TGG | - | chr3.4:99700634-99700653 | None:intergenic | 35.0% | |
| CTTGACAGATATCACAAAGA+GGG | - | chr3.4:99700429-99700448 | None:intergenic | 35.0% | |
| GAAGCTTTCAAGCAATTCTT+TGG | + | chr3.4:99700730-99700749 | MS.gene063133:CDS | 35.0% | |
| GAGCTAATATTAGAAGGAGT+AGG | - | chr3.4:99701504-99701523 | None:intergenic | 35.0% | |
| GATCTACTAGAGTAGTTTCT+TGG | - | chr3.4:99700791-99700810 | None:intergenic | 35.0% | |
| GCAGAAGCAGAATCATTATT+CGG | + | chr3.4:99701383-99701402 | MS.gene063133:intron | 35.0% | |
| GTTTACATTTGTAAGGGTCT+AGG | + | chr3.4:99701207-99701226 | MS.gene063133:intron | 35.0% | |
| TATTAAAGATCCAGATGCGA+CGG | - | chr3.4:99700500-99700519 | None:intergenic | 35.0% | |
| TCCTTCTAATATTAGCTCAG+TGG | + | chr3.4:99701506-99701525 | MS.gene063133:CDS | 35.0% | |
| TCTAATATTAGCTCAGTGGT+TGG | + | chr3.4:99701510-99701529 | MS.gene063133:CDS | 35.0% | |
| ACCTTACAGAAACCATTAGG+TGG | - | chr3.4:99700986-99701005 | None:intergenic | 40.0% | |
| ATCACAAAGAGGGTAGTCTT+TGG | - | chr3.4:99700419-99700438 | None:intergenic | 40.0% | |
| CATAACAGGTTTCTTCTCTC+TGG | + | chr3.4:99700704-99700723 | MS.gene063133:CDS | 40.0% | |
| CCTTACAGAAACCATTAGGT+GGG | - | chr3.4:99700985-99701004 | None:intergenic | 40.0% | |
| CTTTCTCACACACATCACAT+TGG | - | chr3.4:99700273-99700292 | None:intergenic | 40.0% | |
| GATTATGGCTGTACAGTTTC+AGG | + | chr3.4:99701573-99701592 | MS.gene063133:CDS | 40.0% | |
| GATTCATCATCCACCAGTAT+TGG | + | chr3.4:99700758-99700777 | MS.gene063133:CDS | 40.0% | |
| GGATTGTATGATCACATCCA+TGG | - | chr3.4:99700339-99700358 | None:intergenic | 40.0% | |
| GTGTATGTTCATTTGCTCCA+TGG | - | chr3.4:99700679-99700698 | None:intergenic | 40.0% | |
| TATAAAAACGGTCGCGGTAA+AGG | + | chr3.4:99700471-99700490 | MS.gene063133:intron | 40.0% | |
| TGTTCATTTGCTCCATGGAT+TGG | - | chr3.4:99700674-99700693 | None:intergenic | 40.0% | |
| TTCATCTGAAGGACAGAACA+TGG | - | chr3.4:99700305-99700324 | None:intergenic | 40.0% | |
| ! | AATATCGTGCGCTTTTGTAC+AGG | + | chr3.4:99700586-99700605 | MS.gene063133:intron | 40.0% |
| ! | ATACTGGTGGATGATGAATC+TGG | - | chr3.4:99700758-99700777 | None:intergenic | 40.0% |
| ! | TACTGGTGGATGATGAATCT+GGG | - | chr3.4:99700757-99700776 | None:intergenic | 40.0% |
| CAAAGAGCAGCTTCATCTGA+AGG | - | chr3.4:99700316-99700335 | None:intergenic | 45.0% | |
| CCCACCTAATGGTTTCTGTA+AGG | + | chr3.4:99700982-99701001 | MS.gene063133:CDS | 45.0% | |
| GAATGTGACCTTCCAATCCA+TGG | + | chr3.4:99700659-99700678 | MS.gene063133:CDS | 45.0% | |
| GATGCTTCTTTCCCACCTAA+TGG | + | chr3.4:99700971-99700990 | MS.gene063133:CDS | 45.0% | |
| GTGTTTGGTTGCAAGCTTGT+TGG | - | chr3.4:99700368-99700387 | None:intergenic | 45.0% | |
| TCTTGGTTCAGAGCCAATAC+TGG | - | chr3.4:99700774-99700793 | None:intergenic | 45.0% | |
| TGATGTGTGTGAGAAAGCTG+AGG | + | chr3.4:99700276-99700295 | MS.gene063133:CDS | 45.0% | |
| TTGCATGGCTGAAGACAACA+TGG | + | chr3.4:99700862-99700881 | MS.gene063133:CDS | 45.0% | |
| ! | AGAGGTACACACGTTACTTG+AGG | - | chr3.4:99701450-99701469 | None:intergenic | 45.0% |
| !! | CATTTGCTCCATGGATTGGA+AGG | - | chr3.4:99700670-99700689 | None:intergenic | 45.0% |
| !! | ATAAATTTAAGTATAATTAA+AGG | - | chr3.4:99701025-99701044 | None:intergenic | 5.0% |
| !! | TAAATTTAAGTATAATTAAA+GGG | - | chr3.4:99701024-99701043 | None:intergenic | 5.0% |
| GACAACATGGCTAGTGACAC+TGG | + | chr3.4:99700875-99700894 | MS.gene063133:CDS | 50.0% | |
| GATGAAGCTGCTCTTTGCCA+TGG | + | chr3.4:99700319-99700338 | MS.gene063133:CDS | 50.0% | |
| TGGTTCAGAGCCAATACTGG+TGG | - | chr3.4:99700771-99700790 | None:intergenic | 50.0% | |
| ! | AACGTGTGTACCTCTAGCTC+AGG | + | chr3.4:99701455-99701474 | MS.gene063133:CDS | 50.0% |
| !! | GAGGGTAGTCTTTGGAGTTG+AGG | - | chr3.4:99700411-99700430 | None:intergenic | 50.0% |
| !! | GGTAGTCTTTGGAGTTGAGG+TGG | - | chr3.4:99700408-99700427 | None:intergenic | 50.0% |
| !! | TGGTTGCAAGCTTGTTGGCA+CGG | - | chr3.4:99700363-99700382 | None:intergenic | 50.0% |
| GTAAAGGTTGCCGTCGCATC+TGG | + | chr3.4:99700487-99700506 | MS.gene063133:intron | 55.0% | |
| ! | CGTGCGCTTTTGTACAGGAG+AGG | + | chr3.4:99700591-99700610 | MS.gene063133:intron | 55.0% |
| ! | GCTGATTCAGCCTGAGCTAG+AGG | - | chr3.4:99701468-99701487 | None:intergenic | 55.0% |
| ! | GCTTTTGTACAGGAGAGGCG+TGG | + | chr3.4:99700596-99700615 | MS.gene063133:intron | 55.0% |
| !! | TTGCAAGCTTGTTGGCACGG+TGG | - | chr3.4:99700360-99700379 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 99700262 | 99701638 | 99700262 | ID=MS.gene063133 |
| chr3.4 | mRNA | 99700262 | 99701638 | 99700262 | ID=MS.gene063133.t1;Parent=MS.gene063133 |
| chr3.4 | exon | 99700262 | 99700447 | 99700262 | ID=MS.gene063133.t1.exon1;Parent=MS.gene063133.t1 |
| chr3.4 | CDS | 99700262 | 99700447 | 99700262 | ID=cds.MS.gene063133.t1;Parent=MS.gene063133.t1 |
| chr3.4 | exon | 99700608 | 99701003 | 99700608 | ID=MS.gene063133.t1.exon2;Parent=MS.gene063133.t1 |
| chr3.4 | CDS | 99700608 | 99701003 | 99700608 | ID=cds.MS.gene063133.t1;Parent=MS.gene063133.t1 |
| chr3.4 | exon | 99701387 | 99701638 | 99701387 | ID=MS.gene063133.t1.exon3;Parent=MS.gene063133.t1 |
| chr3.4 | CDS | 99701387 | 99701638 | 99701387 | ID=cds.MS.gene063133.t1;Parent=MS.gene063133.t1 |
| Gene Sequence |
| Protein sequence |
