Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063135.t1 | AES74237.1 | 90.6 | 192 | 18 | 0 | 1 | 192 | 5 | 196 | 1.90E-100 | 375.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063135.t1 | Q9FEN9 | 58.9 | 190 | 73 | 2 | 4 | 189 | 24 | 212 | 1.2e-63 | 244.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063135.t1 | G7J7R1 | 90.6 | 192 | 18 | 0 | 1 | 192 | 5 | 196 | 1.3e-100 | 375.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene063135.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063135.t1 | MTR_3g117280 | 90.625 | 192 | 18 | 0 | 1 | 192 | 5 | 196 | 1.12e-132 | 370 |
| MS.gene063135.t1 | MTR_3g117270 | 70.619 | 194 | 53 | 1 | 3 | 192 | 25 | 218 | 1.89e-102 | 294 |
| MS.gene063135.t1 | MTR_3g117270 | 69.519 | 187 | 53 | 1 | 3 | 185 | 25 | 211 | 1.89e-97 | 281 |
| MS.gene063135.t1 | MTR_2g078310 | 54.922 | 193 | 83 | 2 | 4 | 192 | 24 | 216 | 1.59e-75 | 226 |
| MS.gene063135.t1 | MTR_3g117270 | 67.376 | 141 | 42 | 1 | 3 | 139 | 25 | 165 | 5.30e-69 | 207 |
| MS.gene063135.t1 | MTR_3g117270 | 67.143 | 140 | 42 | 1 | 3 | 138 | 25 | 164 | 8.80e-68 | 204 |
| MS.gene063135.t1 | MTR_2g090365 | 50.588 | 170 | 78 | 3 | 4 | 168 | 284 | 452 | 1.74e-54 | 179 |
| MS.gene063135.t1 | MTR_5g097190 | 43.750 | 128 | 63 | 3 | 44 | 162 | 11 | 138 | 1.41e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063135.t1 | AT4G39100 | 58.947 | 190 | 73 | 2 | 4 | 189 | 24 | 212 | 1.36e-83 | 247 |
| MS.gene063135.t1 | AT4G22140 | 56.477 | 193 | 80 | 2 | 4 | 192 | 32 | 224 | 1.58e-81 | 241 |
| MS.gene063135.t1 | AT4G22140 | 55.914 | 186 | 78 | 2 | 4 | 185 | 32 | 217 | 3.63e-77 | 231 |
| MS.gene063135.t1 | AT4G22140 | 55.914 | 186 | 78 | 2 | 4 | 185 | 32 | 217 | 3.63e-77 | 231 |
| MS.gene063135.t1 | AT4G39100 | 62.857 | 140 | 48 | 1 | 4 | 139 | 24 | 163 | 2.35e-65 | 198 |
| MS.gene063135.t1 | AT4G04260 | 48.913 | 184 | 88 | 3 | 6 | 184 | 9 | 191 | 2.84e-59 | 184 |
| MS.gene063135.t1 | AT4G04260 | 48.045 | 179 | 87 | 3 | 11 | 184 | 1 | 178 | 3.53e-56 | 176 |
| MS.gene063135.t1 | AT4G04260 | 56.034 | 116 | 48 | 1 | 4 | 116 | 25 | 140 | 1.88e-41 | 137 |
Find 37 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGGAATACCTTTGTATT+TGG | 0.149988 | 3.4:-99676097 | None:intergenic |
| AATGAAGTTGTCAATTCTTT+CGG | 0.316759 | 3.4:-99676011 | None:intergenic |
| TTAGGAATACCTTTGTATTT+GGG | 0.355673 | 3.4:-99676096 | None:intergenic |
| ACCATCACTTTCATCTTTGA+CGG | 0.371838 | 3.4:-99676944 | None:intergenic |
| AAAATGCACTGTTCACAGTT+TGG | 0.374580 | 3.4:+99674377 | MS.gene063135:CDS |
| CACTGGATCATAACTTCATC+AGG | 0.392678 | 3.4:-99674687 | None:intergenic |
| CATAACTTCATCAGGGTTGT+AGG | 0.393557 | 3.4:-99674679 | None:intergenic |
| ACTCACACTTGAACTATATC+AGG | 0.399463 | 3.4:-99674483 | None:intergenic |
| TGTTGGTATCCACGGTTTAG+AGG | 0.405406 | 3.4:-99674190 | None:intergenic |
| TTCGTGTCCGTTGGTACTAC+TGG | 0.414838 | 3.4:+99674256 | MS.gene063135:CDS |
| TTGAACTACAATTCCGCTAC+TGG | 0.456893 | 3.4:+99674450 | MS.gene063135:CDS |
| CAAGAGACGTTCGTGTCCGT+TGG | 0.522823 | 3.4:+99674247 | MS.gene063135:CDS |
| CGACCCTTCTTTGTCTCCTC+CGG | 0.527955 | 3.4:-99674279 | None:intergenic |
| TACATGAAGCTTGATGTTGT+TGG | 0.528797 | 3.4:+99674405 | MS.gene063135:CDS |
| AGTGTGATCGCTGCACTGAT+TGG | 0.536011 | 3.4:+99674706 | MS.gene063135:CDS |
| GCCACATATGTTGGTATCCA+CGG | 0.537762 | 3.4:-99674198 | None:intergenic |
| ATAACTTCATCAGGGTTGTA+GGG | 0.552648 | 3.4:-99674678 | None:intergenic |
| ACCGTCATGTCTATACAAGC+AGG | 0.569799 | 3.4:-99675980 | None:intergenic |
| AAGGGTCGGCGTCATTTCCA+TGG | 0.570085 | 3.4:+99674294 | MS.gene063135:CDS |
| CTGGCCGGAGGAGACAAAGA+AGG | 0.572097 | 3.4:+99674275 | MS.gene063135:CDS |
| ACCGTGGATACCAACATATG+TGG | 0.579459 | 3.4:+99674197 | MS.gene063135:CDS |
| TGTCCGTTGGTACTACTGGC+CGG | 0.580901 | 3.4:+99674260 | MS.gene063135:CDS |
| TCGATCATAGCCACATATGT+TGG | 0.588140 | 3.4:-99674207 | None:intergenic |
| GCGTCATTTCCATGGCTCAA+AGG | 0.593809 | 3.4:+99674302 | MS.gene063135:CDS |
| GATTAGAACTTACTACGGAA+CGG | 0.601353 | 3.4:-99674031 | None:intergenic |
| CGGAGGAGACAAAGAAGGGT+CGG | 0.615656 | 3.4:+99674280 | MS.gene063135:CDS |
| TCCTGCTTGTATAGACATGA+CGG | 0.620123 | 3.4:+99675979 | MS.gene063135:CDS |
| AATCAGTGCAGCGATCACAC+TGG | 0.630754 | 3.4:-99674704 | None:intergenic |
| TGGCCGGAGGAGACAAAGAA+GGG | 0.641254 | 3.4:+99674276 | MS.gene063135:CDS |
| CAGAGTGTTGATACAATCGA+AGG | 0.642499 | 3.4:+99674354 | MS.gene063135:CDS |
| AGGAGTGAGAGCACCAGTAG+CGG | 0.642633 | 3.4:-99674463 | None:intergenic |
| CCTCCGGCCAGTAGTACCAA+CGG | 0.658998 | 3.4:-99674263 | None:intergenic |
| TGCAAGACTCCCAAATACAA+AGG | 0.662219 | 3.4:+99676087 | MS.gene063135:CDS |
| ACTGGATCATAACTTCATCA+GGG | 0.673831 | 3.4:-99674686 | None:intergenic |
| GCATGCGTTCCTCTAAACCG+TGG | 0.713047 | 3.4:+99674181 | MS.gene063135:CDS |
| CCGTTGGTACTACTGGCCGG+AGG | 0.722355 | 3.4:+99674263 | MS.gene063135:CDS |
| TGCTTGTATAGACATGACGG+TGG | 0.750089 | 3.4:+99675982 | MS.gene063135:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGGTTATTATTTAATTAA+GGG | - | chr3.4:99675590-99675609 | None:intergenic | 10.0% |
| !!! | AAATTTTTCTTCTAAATAAA+AGG | + | chr3.4:99676864-99676883 | MS.gene063135:intron | 10.0% |
| !! | AATAATAGGAAAATATGTAA+AGG | - | chr3.4:99674517-99674536 | None:intergenic | 15.0% |
| !! | ATAATTGAAATTCATTTGAA+CGG | + | chr3.4:99675242-99675261 | MS.gene063135:intron | 15.0% |
| !! | ATTGTAAAAAATAAAAGGAA+AGG | + | chr3.4:99675051-99675070 | MS.gene063135:intron | 15.0% |
| !! | CAAATATAGAAAAAACTTAT+TGG | + | chr3.4:99675447-99675466 | MS.gene063135:intron | 15.0% |
| !! | CTATGGTTATTATTTAATTA+AGG | - | chr3.4:99675591-99675610 | None:intergenic | 15.0% |
| !! | TATTCTTATTCAAAATACAA+AGG | - | chr3.4:99676693-99676712 | None:intergenic | 15.0% |
| !! | TATTTAGAAGAAAAATTTAC+AGG | - | chr3.4:99676862-99676881 | None:intergenic | 15.0% |
| !!! | AAAATACATGGATTAATTAA+AGG | + | chr3.4:99675384-99675403 | MS.gene063135:intron | 15.0% |
| !!! | AAATACATGGATTAATTAAA+GGG | + | chr3.4:99675385-99675404 | MS.gene063135:intron | 15.0% |
| !!! | ATTGATGTTTATATTTTGTT+TGG | + | chr3.4:99676899-99676918 | MS.gene063135:intron | 15.0% |
| !!! | ATTTTTTTTGACAAAATACA+TGG | + | chr3.4:99675372-99675391 | MS.gene063135:intron | 15.0% |
| !!! | GCAAATAAACTAATTTTTTA+TGG | - | chr3.4:99675829-99675848 | None:intergenic | 15.0% |
| !! | AGATTACATTCACATTATAA+AGG | - | chr3.4:99675930-99675949 | None:intergenic | 20.0% |
| !! | ATTAACTCAATCATACAAAA+CGG | - | chr3.4:99676667-99676686 | None:intergenic | 20.0% |
| !! | TAATTGAAATTCATTTGAAC+GGG | + | chr3.4:99675243-99675262 | MS.gene063135:intron | 20.0% |
| !!! | CATTTCAATGATGTTTTATT+TGG | + | chr3.4:99675104-99675123 | MS.gene063135:intron | 20.0% |
| !!! | TATATTTTGTTTGGTATTGT+AGG | + | chr3.4:99676908-99676927 | MS.gene063135:intron | 20.0% |
| !!! | TATATTTTGTTTGTTTCAGA+GGG | + | chr3.4:99674147-99674166 | MS.gene063135:intron | 20.0% |
| !!! | TTATATTTTGTTTGTTTCAG+AGG | + | chr3.4:99674146-99674165 | MS.gene063135:intron | 20.0% |
| !!! | TTCATTGCTCTAAAATTTAA+TGG | + | chr3.4:99674633-99674652 | MS.gene063135:intron | 20.0% |
| ! | AACTTGATTAGAACTTACTA+CGG | - | chr3.4:99674039-99674058 | None:intergenic | 25.0% |
| ! | AATGAAGTTGTCAATTCTTT+CGG | - | chr3.4:99676014-99676033 | None:intergenic | 25.0% |
| ! | CTGATACCATCTTAAAATTT+GGG | - | chr3.4:99676464-99676483 | None:intergenic | 25.0% |
| ! | TCTATTTCACATAAGTCATT+AGG | - | chr3.4:99676829-99676848 | None:intergenic | 25.0% |
| ! | TCTGATACCATCTTAAAATT+TGG | - | chr3.4:99676465-99676484 | None:intergenic | 25.0% |
| ! | TTAACTCAATCATACAAAAC+GGG | - | chr3.4:99676666-99676685 | None:intergenic | 25.0% |
| ! | TTAGGAATACCTTTGTATTT+GGG | - | chr3.4:99676099-99676118 | None:intergenic | 25.0% |
| ! | TTTCTGTGTAATTATTTCAG+TGG | + | chr3.4:99675313-99675332 | MS.gene063135:intron | 25.0% |
| !! | AACTTAGAGAGTGTAATAAT+AGG | - | chr3.4:99674531-99674550 | None:intergenic | 25.0% |
| !! | TAGAGAATCTTTCTTCTTTT+AGG | + | chr3.4:99675526-99675545 | MS.gene063135:intron | 25.0% |
| !! | TATGTAAATCCTTTTCAAAC+AGG | - | chr3.4:99675890-99675909 | None:intergenic | 25.0% |
| !! | TTAGTTTATTTGCTAAACCA+TGG | + | chr3.4:99675836-99675855 | MS.gene063135:intron | 25.0% |
| !!! | ATTTTTTATGGTTTGTGAAG+AGG | - | chr3.4:99675817-99675836 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTACAATGAAGA+AGG | + | chr3.4:99674574-99674593 | MS.gene063135:intron | 25.0% |
| !!! | TTGCAACTTTTTTTGAACTT+CGG | - | chr3.4:99676053-99676072 | None:intergenic | 25.0% |
| AAACAGAATTTCCAACACAT+TGG | - | chr3.4:99676248-99676267 | None:intergenic | 30.0% | |
| AATTTCCAACACATTGGAAT+AGG | - | chr3.4:99676242-99676261 | None:intergenic | 30.0% | |
| ACCATTTGAATTTACTTACC+TGG | + | chr3.4:99676167-99676186 | MS.gene063135:intron | 30.0% | |
| ATATATCCATATTTCTCAGC+TGG | - | chr3.4:99676731-99676750 | None:intergenic | 30.0% | |
| CAAATATTTCCCATTTACCA+TGG | - | chr3.4:99675856-99675875 | None:intergenic | 30.0% | |
| CAGCATAATATTTGTGATTC+AGG | + | chr3.4:99675951-99675970 | MS.gene063135:intron | 30.0% | |
| CTAAAACTGTCAAACAATAG+TGG | - | chr3.4:99676122-99676141 | None:intergenic | 30.0% | |
| GATGAAGATATCAAAGATCT+CGG | - | chr3.4:99676196-99676215 | None:intergenic | 30.0% | |
| GCTGAGAAATATGGATATAT+CGG | + | chr3.4:99676731-99676750 | MS.gene063135:intron | 30.0% | |
| GTTAGGAATACCTTTGTATT+TGG | - | chr3.4:99676100-99676119 | None:intergenic | 30.0% | |
| TAATTCCTATTCCAATGTGT+TGG | + | chr3.4:99676234-99676253 | MS.gene063135:intron | 30.0% | |
| TACCATCTTAAAATTTGGGT+TGG | - | chr3.4:99676460-99676479 | None:intergenic | 30.0% | |
| TATAAGATTGTGTCTTTCCA+TGG | - | chr3.4:99676778-99676797 | None:intergenic | 30.0% | |
| TGGTAAATGGGAAATATTTG+AGG | + | chr3.4:99675856-99675875 | MS.gene063135:intron | 30.0% | |
| TTGTTCATGACATGTGATAT+AGG | + | chr3.4:99674856-99674875 | MS.gene063135:intron | 30.0% | |
| TTGTTTGAATTTCAGACTTC+TGG | + | chr3.4:99674789-99674808 | MS.gene063135:intron | 30.0% | |
| TTTGCTAAACCATGGTAAAT+GGG | + | chr3.4:99675844-99675863 | MS.gene063135:intron | 30.0% | |
| ! | ACCATCTTAAAATTTGGGTT+GGG | - | chr3.4:99676459-99676478 | None:intergenic | 30.0% |
| ! | AGACAACAATACTTCTAGTT+AGG | + | chr3.4:99674887-99674906 | MS.gene063135:intron | 30.0% |
| ! | ATTTGCTAAACCATGGTAAA+TGG | + | chr3.4:99675843-99675862 | MS.gene063135:intron | 30.0% |
| ! | CATAACACTTCAGGTTTATT+GGG | - | chr3.4:99676556-99676575 | None:intergenic | 30.0% |
| ! | CTCTGATTAATTGTACTGAT+AGG | + | chr3.4:99674083-99674102 | MS.gene063135:intron | 30.0% |
| !! | ATTTTGTTTGGTATTGTAGG+TGG | + | chr3.4:99676911-99676930 | MS.gene063135:intron | 30.0% |
| !! | GGTATTAAGTGTTGAAAACA+AGG | - | chr3.4:99676150-99676169 | None:intergenic | 30.0% |
| !! | GTTTTAGTACCTGTTTGAAA+AGG | + | chr3.4:99675878-99675897 | MS.gene063135:intron | 30.0% |
| !!! | TGAGGGGTGTTTTTTTTTTT+GGG | - | chr3.4:99675714-99675733 | None:intergenic | 30.0% |
| !!! | TTGAGGGGTGTTTTTTTTTT+TGG | - | chr3.4:99675715-99675734 | None:intergenic | 30.0% |
| AAAATGCACTGTTCACAGTT+TGG | + | chr3.4:99674377-99674396 | MS.gene063135:CDS | 35.0% | |
| ACTCACACTTGAACTATATC+AGG | - | chr3.4:99674486-99674505 | None:intergenic | 35.0% | |
| ACTGGATCATAACTTCATCA+GGG | - | chr3.4:99674689-99674708 | None:intergenic | 35.0% | |
| ACTGTCAAACAATAGTGGTT+AGG | - | chr3.4:99676117-99676136 | None:intergenic | 35.0% | |
| AGAACTGTATAAGCAGAACA+AGG | - | chr3.4:99674745-99674764 | None:intergenic | 35.0% | |
| AGCCACAACAGATATAAGAT+AGG | - | chr3.4:99676489-99676508 | None:intergenic | 35.0% | |
| AGCCTATCTTATATCTGTTG+TGG | + | chr3.4:99676484-99676503 | MS.gene063135:intron | 35.0% | |
| AGGTTTATTGGGATAACACT+CGG | - | chr3.4:99676545-99676564 | None:intergenic | 35.0% | |
| ATAACTTCATCAGGGTTGTA+GGG | - | chr3.4:99674681-99674700 | None:intergenic | 35.0% | |
| ATATGTCGTGCTAAAGTTCA+TGG | + | chr3.4:99674931-99674950 | MS.gene063135:intron | 35.0% | |
| ATGCAGTGTTTATAAGGCTT+GGG | + | chr3.4:99676395-99676414 | MS.gene063135:intron | 35.0% | |
| CTTAGAGCTAAGGAAGAAAT+TGG | - | chr3.4:99675278-99675297 | None:intergenic | 35.0% | |
| GAACTGTATAAGCAGAACAA+GGG | - | chr3.4:99674744-99674763 | None:intergenic | 35.0% | |
| GAATCAGCAGATTGTACAAT+TGG | + | chr3.4:99674966-99674985 | MS.gene063135:intron | 35.0% | |
| GATTAGAACTTACTACGGAA+CGG | - | chr3.4:99674034-99674053 | None:intergenic | 35.0% | |
| GCAACACAAATGCCTTAATT+AGG | - | chr3.4:99676616-99676635 | None:intergenic | 35.0% | |
| GCCAGGTAAGTAAATTCAAA+TGG | - | chr3.4:99676171-99676190 | None:intergenic | 35.0% | |
| TACATGAAGCTTGATGTTGT+TGG | + | chr3.4:99674405-99674424 | MS.gene063135:CDS | 35.0% | |
| TATGCAGTGTTTATAAGGCT+TGG | + | chr3.4:99676394-99676413 | MS.gene063135:intron | 35.0% | |
| TGGCATATGCAGTGTTTATA+AGG | + | chr3.4:99676389-99676408 | MS.gene063135:intron | 35.0% | |
| TTGTTACAATGAAGAAGGTG+TGG | + | chr3.4:99674579-99674598 | MS.gene063135:intron | 35.0% | |
| ! | ATAAACCTGAAGTGTTATGG+TGG | + | chr3.4:99676557-99676576 | MS.gene063135:intron | 35.0% |
| ! | CAACAATACTTCTAGTTAGG+TGG | + | chr3.4:99674890-99674909 | MS.gene063135:intron | 35.0% |
| ! | CCAATAAACCTGAAGTGTTA+TGG | + | chr3.4:99676554-99676573 | MS.gene063135:intron | 35.0% |
| ! | CCATAACACTTCAGGTTTAT+TGG | - | chr3.4:99676557-99676576 | None:intergenic | 35.0% |
| ! | TGTTACAATGAAGAAGGTGT+GGG | + | chr3.4:99674580-99674599 | MS.gene063135:intron | 35.0% |
| !! | AACAATGCTTGCTTTTGTGA+AGG | - | chr3.4:99675655-99675674 | None:intergenic | 35.0% |
| !! | AATCATTAACTTGTGCCTTG+AGG | - | chr3.4:99675427-99675446 | None:intergenic | 35.0% |
| !! | ACAATGCTTGCTTTTGTGAA+GGG | - | chr3.4:99675654-99675673 | None:intergenic | 35.0% |
| !! | AGTGTTAACTTGTGTCCTTA+GGG | - | chr3.4:99675566-99675585 | None:intergenic | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | - | chr3.4:99675426-99675445 | None:intergenic | 35.0% |
| !! | CAATTTCTTCCTTAGCTCTA+AGG | + | chr3.4:99675276-99675295 | MS.gene063135:intron | 35.0% |
| !! | TAGTGTTAACTTGTGTCCTT+AGG | - | chr3.4:99675567-99675586 | None:intergenic | 35.0% |
| !! | TTTGGTGGGTTATCTATCTA+TGG | - | chr3.4:99675608-99675627 | None:intergenic | 35.0% |
| !! | TTTTTAGGGGTGATGAGTTT+TGG | - | chr3.4:99675626-99675645 | None:intergenic | 35.0% |
| AATGCCTTAATTAGGCAGCT+AGG | - | chr3.4:99676608-99676627 | None:intergenic | 40.0% | |
| ACCCCTCAAAATAAAACACC+CGG | + | chr3.4:99675726-99675745 | MS.gene063135:intron | 40.0% | |
| ACTTTCCACCATAACACTTC+AGG | - | chr3.4:99676565-99676584 | None:intergenic | 40.0% | |
| AGAAGTAATGAGACACCAGA+CGG | - | chr3.4:99675178-99675197 | None:intergenic | 40.0% | |
| ATATCGGCATGCTTCTCTAT+AGG | + | chr3.4:99676747-99676766 | MS.gene063135:intron | 40.0% | |
| ATGCCTTAATTAGGCAGCTA+GGG | - | chr3.4:99676607-99676626 | None:intergenic | 40.0% | |
| CACTGGATCATAACTTCATC+AGG | - | chr3.4:99674690-99674709 | None:intergenic | 40.0% | |
| CATAACTTCATCAGGGTTGT+AGG | - | chr3.4:99674682-99674701 | None:intergenic | 40.0% | |
| CTCAAGTAGTAGCACATACA+CGG | + | chr3.4:99675339-99675358 | MS.gene063135:intron | 40.0% | |
| GAAGATATCAAAGATCTCGG+AGG | - | chr3.4:99676193-99676212 | None:intergenic | 40.0% | |
| GTCTACACTTCAGGCTTATT+GGG | + | chr3.4:99676518-99676537 | MS.gene063135:intron | 40.0% | |
| GTTTCTTAACATGTGCCCTA+AGG | + | chr3.4:99675548-99675567 | MS.gene063135:intron | 40.0% | |
| GTTTGACCAGCTGAGAAATA+TGG | + | chr3.4:99676722-99676741 | MS.gene063135:intron | 40.0% | |
| TCAACCTAACAGAACCAGTA+AGG | - | chr3.4:99676430-99676449 | None:intergenic | 40.0% | |
| TCCTGCTTGTATAGACATGA+CGG | + | chr3.4:99675979-99675998 | MS.gene063135:CDS | 40.0% | |
| TCCTTAGGATAAGTGCTCTT+CGG | - | chr3.4:99675777-99675796 | None:intergenic | 40.0% | |
| TCGATCATAGCCACATATGT+TGG | - | chr3.4:99674210-99674229 | None:intergenic | 40.0% | |
| TGCAAGACTCCCAAATACAA+AGG | + | chr3.4:99676087-99676106 | MS.gene063135:CDS | 40.0% | |
| TTGAACTACAATTCCGCTAC+TGG | + | chr3.4:99674450-99674469 | MS.gene063135:CDS | 40.0% | |
| ! | AATCATACAAAACGGGCTTG+AGG | - | chr3.4:99676659-99676678 | None:intergenic | 40.0% |
| ! | ATCATACAAAACGGGCTTGA+GGG | - | chr3.4:99676658-99676677 | None:intergenic | 40.0% |
| ! | TATGGTTTGTGAAGAGGTGT+GGG | - | chr3.4:99675811-99675830 | None:intergenic | 40.0% |
| ! | TTATGGTTTGTGAAGAGGTG+TGG | - | chr3.4:99675812-99675831 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr3.4:99675409-99675428 | MS.gene063135:intron | 40.0% |
| !! | CAATGCTTGCTTTTGTGAAG+GGG | - | chr3.4:99675653-99675672 | None:intergenic | 40.0% |
| !! | CAGAGTGTTGATACAATCGA+AGG | + | chr3.4:99674354-99674373 | MS.gene063135:CDS | 40.0% |
| !! | GCCCAACCCAAATTTTAAGA+TGG | + | chr3.4:99676455-99676474 | MS.gene063135:intron | 40.0% |
| !! | GTTACCTTACTGGTTCTGTT+AGG | + | chr3.4:99676423-99676442 | MS.gene063135:intron | 40.0% |
| !! | TTGTGAAGGGGTCTGTTTTT+AGG | - | chr3.4:99675641-99675660 | None:intergenic | 40.0% |
| !!! | ACCGGGTGTTTTATTTTGAG+GGG | - | chr3.4:99675730-99675749 | None:intergenic | 40.0% |
| !!! | GACCGGGTGTTTTATTTTGA+GGG | - | chr3.4:99675731-99675750 | None:intergenic | 40.0% |
| !!! | TGTGAAGGGGTCTGTTTTTA+GGG | - | chr3.4:99675640-99675659 | None:intergenic | 40.0% |
| ACCGTCATGTCTATACAAGC+AGG | - | chr3.4:99675983-99676002 | None:intergenic | 45.0% | |
| ACCGTGGATACCAACATATG+TGG | + | chr3.4:99674197-99674216 | MS.gene063135:CDS | 45.0% | |
| ACTGCATATGCCATATGTCC+AGG | - | chr3.4:99676382-99676401 | None:intergenic | 45.0% | |
| AGGATGCAATGAAGACAACC+CGG | - | chr3.4:99676308-99676327 | None:intergenic | 45.0% | |
| CGTCTACACTTCAGGCTTAT+TGG | + | chr3.4:99676517-99676536 | MS.gene063135:intron | 45.0% | |
| CTTCTCTATAGGCATAGCCA+TGG | + | chr3.4:99676758-99676777 | MS.gene063135:intron | 45.0% | |
| GAAAAAGCTCCTTTGAGCCA+TGG | - | chr3.4:99674314-99674333 | None:intergenic | 45.0% | |
| GAAGTAATGAGACACCAGAC+GGG | - | chr3.4:99675177-99675196 | None:intergenic | 45.0% | |
| GCCACATATGTTGGTATCCA+CGG | - | chr3.4:99674201-99674220 | None:intergenic | 45.0% | |
| TACACAGAAATTCTCCTCCC+AGG | - | chr3.4:99675303-99675322 | None:intergenic | 45.0% | |
| TCCAACACCTTCGTTGTGTT+GGG | + | chr3.4:99676327-99676346 | MS.gene063135:intron | 45.0% | |
| TGATTTAGTCCCACTTTGCC+TGG | + | chr3.4:99676361-99676380 | MS.gene063135:intron | 45.0% | |
| TGCCTTAATTAGGCAGCTAG+GGG | - | chr3.4:99676606-99676625 | None:intergenic | 45.0% | |
| TGCTTGTATAGACATGACGG+TGG | + | chr3.4:99675982-99676001 | MS.gene063135:CDS | 45.0% | |
| TGTTGGTATCCACGGTTTAG+AGG | - | chr3.4:99674193-99674212 | None:intergenic | 45.0% | |
| TTGGGTAGCAGTTACCTTAC+TGG | + | chr3.4:99676413-99676432 | MS.gene063135:intron | 45.0% | |
| TTTCGCATCGTCTACACTTC+AGG | + | chr3.4:99676509-99676528 | MS.gene063135:intron | 45.0% | |
| ! | GTAGTGACGATGAGTGGTTT+TGG | - | chr3.4:99675688-99675707 | None:intergenic | 45.0% |
| !! | TAGGGGTGATGAGTTTTGGT+GGG | - | chr3.4:99675622-99675641 | None:intergenic | 45.0% |
| !! | TCCGAAGAGCACTTATCCTA+AGG | + | chr3.4:99675773-99675792 | MS.gene063135:intron | 45.0% |
| !! | TTAGGGGTGATGAGTTTTGG+TGG | - | chr3.4:99675623-99675642 | None:intergenic | 45.0% |
| !! | TTCCTTAGCTCTAAGGTCCT+GGG | + | chr3.4:99675283-99675302 | MS.gene063135:intron | 45.0% |
| !!! | CTCAGGTTTGGTTTTAGGAC+CGG | - | chr3.4:99675748-99675767 | None:intergenic | 45.0% |
| !!! | GGACCGGGTGTTTTATTTTG+AGG | - | chr3.4:99675732-99675751 | None:intergenic | 45.0% |
| !!! | GTGAAGGGGTCTGTTTTTAG+GGG | - | chr3.4:99675639-99675658 | None:intergenic | 45.0% |
| !!! | TCAGGTTTGGTTTTAGGACC+GGG | - | chr3.4:99675747-99675766 | None:intergenic | 45.0% |
| !!! | TGTGGCTCAGGTTTGGTTTT+AGG | - | chr3.4:99675753-99675772 | None:intergenic | 45.0% |
| !! | TATAAATTGTAAAAAATAAA+AGG | + | chr3.4:99675046-99675065 | MS.gene063135:intron | 5.0% |
| AATCAGTGCAGCGATCACAC+TGG | - | chr3.4:99674707-99674726 | None:intergenic | 50.0% | |
| ATATGTCTTTCGCACCCGTC+TGG | + | chr3.4:99675160-99675179 | MS.gene063135:intron | 50.0% | |
| CGGGTGCGAAAGACATATCA+TGG | - | chr3.4:99675158-99675177 | None:intergenic | 50.0% | |
| CTCCAACACCTTCGTTGTGT+TGG | + | chr3.4:99676326-99676345 | MS.gene063135:intron | 50.0% | |
| CTCCCCTAGCTGCCTAATTA+AGG | + | chr3.4:99676601-99676620 | MS.gene063135:intron | 50.0% | |
| CTTAATTAGGCAGCTAGGGG+AGG | - | chr3.4:99676603-99676622 | None:intergenic | 50.0% | |
| CTTCACACCCAACACAACGA+AGG | - | chr3.4:99676337-99676356 | None:intergenic | 50.0% | |
| GCCATATGTCCAGGCAAAGT+GGG | - | chr3.4:99676373-99676392 | None:intergenic | 50.0% | |
| GCGTCATTTCCATGGCTCAA+AGG | + | chr3.4:99674302-99674321 | MS.gene063135:CDS | 50.0% | |
| GGATAAGTGCTCTTCGGATG+TGG | - | chr3.4:99675771-99675790 | None:intergenic | 50.0% | |
| GGGATGCATAGCTGCAATGA+AGG | - | chr3.4:99676638-99676657 | None:intergenic | 50.0% | |
| TATCAAAGATCTCGGAGGCC+AGG | - | chr3.4:99676188-99676207 | None:intergenic | 50.0% | |
| TCCCACTTTGCCTGGACATA+TGG | + | chr3.4:99676369-99676388 | MS.gene063135:intron | 50.0% | |
| TCGTTGTGTTGGGTGTGAAG+AGG | + | chr3.4:99676337-99676356 | MS.gene063135:intron | 50.0% | |
| TGCCATATGTCCAGGCAAAG+TGG | - | chr3.4:99676374-99676393 | None:intergenic | 50.0% | |
| TGGGCAGCTGTTTGATCCTT+AGG | - | chr3.4:99675792-99675811 | None:intergenic | 50.0% | |
| TTCGTGTCCGTTGGTACTAC+TGG | + | chr3.4:99674256-99674275 | MS.gene063135:CDS | 50.0% | |
| ! | ACCCAACACAACGAAGGTGT+TGG | - | chr3.4:99676331-99676350 | None:intergenic | 50.0% |
| ! | AGTGTGATCGCTGCACTGAT+TGG | + | chr3.4:99674706-99674725 | MS.gene063135:CDS | 50.0% |
| !! | CAACACAACGAAGGTGTTGG+AGG | - | chr3.4:99676328-99676347 | None:intergenic | 50.0% |
| !! | CTTCCTTAGCTCTAAGGTCC+TGG | + | chr3.4:99675282-99675301 | MS.gene063135:intron | 50.0% |
| AAGGGTCGGCGTCATTTCCA+TGG | + | chr3.4:99674294-99674313 | MS.gene063135:CDS | 55.0% | |
| ACAACCCGGATGCTGCAGTT+AGG | - | chr3.4:99676294-99676313 | None:intergenic | 55.0% | |
| ATGCTGCAGTTAGGCGGCTA+GGG | - | chr3.4:99676285-99676304 | None:intergenic | 55.0% | |
| CAAGAGACGTTCGTGTCCGT+TGG | + | chr3.4:99674247-99674266 | MS.gene063135:CDS | 55.0% | |
| CGACCCTTCTTTGTCTCCTC+CGG | - | chr3.4:99674282-99674301 | None:intergenic | 55.0% | |
| CGGAGGAGACAAAGAAGGGT+CGG | + | chr3.4:99674280-99674299 | MS.gene063135:CDS | 55.0% | |
| CTCCCAGGACCTTAGAGCTA+AGG | - | chr3.4:99675288-99675307 | None:intergenic | 55.0% | |
| CTTCGGATGTGGCTCAGGTT+TGG | - | chr3.4:99675760-99675779 | None:intergenic | 55.0% | |
| GCATGCGTTCCTCTAAACCG+TGG | + | chr3.4:99674181-99674200 | MS.gene063135:CDS | 55.0% | |
| GGGTGAGTAGTGACGATGAG+TGG | - | chr3.4:99675694-99675713 | None:intergenic | 55.0% | |
| TGGCCGGAGGAGACAAAGAA+GGG | + | chr3.4:99674276-99674295 | MS.gene063135:CDS | 55.0% | |
| TGTCCGTTGGTACTACTGGC+CGG | + | chr3.4:99674260-99674279 | MS.gene063135:CDS | 55.0% | |
| !! | AGGAGTGAGAGCACCAGTAG+CGG | - | chr3.4:99674466-99674485 | None:intergenic | 55.0% |
| !! | CTTAGCTCTAAGGTCCTGGG+AGG | + | chr3.4:99675286-99675305 | MS.gene063135:intron | 55.0% |
| ACCCGGATGCTGCAGTTAGG+CGG | - | chr3.4:99676291-99676310 | None:intergenic | 60.0% | |
| AGCCGCCTAACTGCAGCATC+CGG | + | chr3.4:99676286-99676305 | MS.gene063135:intron | 60.0% | |
| CCTCCGGCCAGTAGTACCAA+CGG | - | chr3.4:99674266-99674285 | None:intergenic | 60.0% | |
| CTGGCCGGAGGAGACAAAGA+AGG | + | chr3.4:99674275-99674294 | MS.gene063135:CDS | 60.0% | |
| GATGCTGCAGTTAGGCGGCT+AGG | - | chr3.4:99676286-99676305 | None:intergenic | 60.0% | |
| GTGCTCTTCGGATGTGGCTC+AGG | - | chr3.4:99675765-99675784 | None:intergenic | 60.0% | |
| TGCTGCAGTTAGGCGGCTAG+GGG | - | chr3.4:99676284-99676303 | None:intergenic | 60.0% | |
| CCGTTGGTACTACTGGCCGG+AGG | + | chr3.4:99674263-99674282 | MS.gene063135:CDS | 65.0% | |
| GCCGCCTAACTGCAGCATCC+GGG | + | chr3.4:99676287-99676306 | MS.gene063135:intron | 65.0% | |
| GCTAGGGGAGGTCGCAAGGA+TGG | - | chr3.4:99676591-99676610 | None:intergenic | 65.0% | |
| GGCAGCTAGGGGAGGTCGCA+AGG | - | chr3.4:99676595-99676614 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 99674028 | 99676956 | 99674028 | ID=MS.gene063135 |
| chr3.4 | mRNA | 99674028 | 99676956 | 99674028 | ID=MS.gene063135.t1;Parent=MS.gene063135 |
| chr3.4 | exon | 99674028 | 99674040 | 99674028 | ID=MS.gene063135.t1.exon1;Parent=MS.gene063135.t1 |
| chr3.4 | CDS | 99674028 | 99674040 | 99674028 | ID=cds.MS.gene063135.t1;Parent=MS.gene063135.t1 |
| chr3.4 | exon | 99674166 | 99674499 | 99674166 | ID=MS.gene063135.t1.exon2;Parent=MS.gene063135.t1 |
| chr3.4 | CDS | 99674166 | 99674499 | 99674166 | ID=cds.MS.gene063135.t1;Parent=MS.gene063135.t1 |
| chr3.4 | exon | 99674659 | 99674727 | 99674659 | ID=MS.gene063135.t1.exon3;Parent=MS.gene063135.t1 |
| chr3.4 | CDS | 99674659 | 99674727 | 99674659 | ID=cds.MS.gene063135.t1;Parent=MS.gene063135.t1 |
| chr3.4 | exon | 99675973 | 99676108 | 99675973 | ID=MS.gene063135.t1.exon4;Parent=MS.gene063135.t1 |
| chr3.4 | CDS | 99675973 | 99676108 | 99675973 | ID=cds.MS.gene063135.t1;Parent=MS.gene063135.t1 |
| chr3.4 | exon | 99676930 | 99676956 | 99676930 | ID=MS.gene063135.t1.exon5;Parent=MS.gene063135.t1 |
| chr3.4 | CDS | 99676930 | 99676956 | 99676930 | ID=cds.MS.gene063135.t1;Parent=MS.gene063135.t1 |
| Gene Sequence |
| Protein sequence |
