AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063282

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063282.t1 MTR_6g477900 31.481 162 92 7 4 154 6 159 2.99e-16 73.9
MS.gene063282.t1 MTR_3g096920 32.847 137 76 5 4 134 7 133 6.69e-15 70.9
MS.gene063282.t1 MTR_3g096920 32.847 137 76 5 4 134 7 133 8.86e-15 70.9
MS.gene063282.t1 MTR_8g094580 34.307 137 74 6 4 134 7 133 9.69e-15 70.5
MS.gene063282.t1 MTR_2g093810 32.867 143 83 4 4 140 14 149 1.17e-14 70.5
MS.gene063282.t1 MTR_2g086880 30.556 144 78 7 6 139 20 151 3.37e-14 69.7
MS.gene063282.t1 MTR_2g086880 30.714 140 75 7 6 135 20 147 5.32e-14 69.3
MS.gene063282.t1 MTR_1g008740 31.429 140 84 5 2 135 25 158 5.44e-14 68.9
MS.gene063282.t1 MTR_1g008740 31.429 140 84 5 2 135 11 144 6.34e-14 68.6
MS.gene063282.t1 MTR_7g100990 34.783 138 71 5 4 132 11 138 6.49e-14 68.6
MS.gene063282.t1 MTR_5g041940 34.043 141 71 7 1 132 1 128 7.05e-14 67.8
MS.gene063282.t1 MTR_2g080010 33.803 142 78 6 4 137 15 148 1.09e-13 68.2
MS.gene063282.t1 MTR_8g467490 32.117 137 80 4 2 132 12 141 1.56e-13 67.8
MS.gene063282.t1 MTR_8g093790 28.916 166 98 6 4 168 10 156 2.15e-13 65.5
MS.gene063282.t1 MTR_4g094302 28.682 129 83 4 4 132 11 130 3.60e-13 64.3
MS.gene063282.t1 MTR_4g098630 33.333 141 76 7 4 134 6 138 3.77e-13 66.2
MS.gene063282.t1 MTR_4g094302 28.682 129 83 4 4 132 11 130 4.71e-13 64.7
MS.gene063282.t1 MTR_2g064090 28.916 166 96 8 4 156 6 162 5.67e-13 65.9
MS.gene063282.t1 MTR_4g134460 36.090 133 71 6 6 132 56 180 6.05e-13 66.2
MS.gene063282.t1 MTR_6g011860 31.579 133 77 5 6 132 17 141 2.85e-12 64.3
MS.gene063282.t1 MTR_1g069805 29.221 154 94 6 4 150 10 155 3.11e-12 63.5
MS.gene063282.t1 MTR_1g097300 33.333 135 73 6 6 132 21 146 3.45e-12 63.9
MS.gene063282.t1 MTR_6g084430 29.341 167 99 8 2 158 3 160 3.72e-12 63.5
MS.gene063282.t1 MTR_2g079990 27.326 172 104 7 4 164 16 177 4.30e-12 63.5
MS.gene063282.t1 MTR_8g099750 30.405 148 82 6 4 142 14 149 5.06e-12 62.4
MS.gene063282.t1 MTR_3g116070 30.657 137 79 5 4 132 23 151 6.96e-12 62.8
MS.gene063282.t1 MTR_7g097090 29.870 154 93 6 4 150 10 155 8.04e-12 62.4
MS.gene063282.t1 MTR_8g023840 31.884 138 77 5 5 133 12 141 1.12e-11 62.4
MS.gene063282.t1 MTR_8g023900 29.213 178 102 7 4 166 188 356 1.47e-11 62.0
MS.gene063282.t1 MTR_8g023900 29.787 141 76 6 2 130 10 139 9.67e-11 59.7
MS.gene063282.t1 MTR_4g035590 30.719 153 91 7 5 149 9 154 2.33e-11 61.2
MS.gene063282.t1 MTR_3g096140 29.714 175 90 8 2 158 5 164 2.81e-11 60.8
MS.gene063282.t1 MTR_2g079990 32.353 136 75 6 4 132 16 141 3.45e-11 60.8
MS.gene063282.t1 MTR_1g090720 29.762 168 93 7 6 156 44 203 4.58e-11 60.8
MS.gene063282.t1 MTR_3g096140 31.176 170 90 8 2 156 5 162 4.80e-11 60.5
MS.gene063282.t1 MTR_4g075980 30.882 136 80 5 6 134 17 145 5.69e-11 60.1
MS.gene063282.t1 MTR_5g090970 31.126 151 89 6 2 145 16 158 6.14e-11 60.1
MS.gene063282.t1 MTR_8g059170 31.618 136 76 6 4 132 14 139 8.29e-11 59.7
MS.gene063282.t1 MTR_4g108760 26.404 178 110 6 4 169 17 185 8.74e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063282.t1 AT3G17730 30.303 165 96 7 4 157 6 162 3.87e-16 73.9
MS.gene063282.t1 AT3G10480 32.099 162 91 7 6 156 29 182 5.30e-16 75.1
MS.gene063282.t1 AT2G24430 33.333 159 86 7 2 149 14 163 7.77e-16 73.9
MS.gene063282.t1 AT2G24430 33.333 159 86 7 2 149 14 163 7.77e-16 73.9
MS.gene063282.t1 AT3G10480 31.288 163 92 7 6 156 29 183 5.44e-15 72.0
MS.gene063282.t1 AT3G10490 30.675 163 93 7 6 156 29 183 5.68e-15 70.5
MS.gene063282.t1 AT1G26870 35.115 131 72 4 6 130 18 141 6.68e-15 71.6
MS.gene063282.t1 AT1G77450 35.036 137 73 5 4 134 10 136 8.52e-15 70.5
MS.gene063282.t1 AT1G71930 31.387 137 82 4 4 134 9 139 1.65e-14 70.1
MS.gene063282.t1 AT1G71930 31.387 137 82 4 4 134 9 139 1.65e-14 70.1
MS.gene063282.t1 AT4G27410 29.651 172 94 8 4 158 14 175 1.88e-14 69.7
MS.gene063282.t1 AT3G10490 30.675 163 93 7 6 156 29 183 2.53e-14 70.1
MS.gene063282.t1 AT2G27300 28.676 136 87 4 6 137 16 145 3.05e-14 69.7
MS.gene063282.t1 AT5G64530 27.604 192 105 6 4 174 3 181 5.12e-14 67.0
MS.gene063282.t1 AT1G01720 35.036 137 73 6 4 134 7 133 6.27e-14 68.2
MS.gene063282.t1 AT1G54330 30.488 164 96 7 4 158 6 160 7.36e-14 68.2
MS.gene063282.t1 AT5G64530 32.061 131 76 4 4 134 3 120 1.17e-13 65.5
MS.gene063282.t1 AT5G46590 33.333 159 83 8 4 148 6 155 1.55e-13 67.4
MS.gene063282.t1 AT5G46590 34.286 140 74 7 4 134 6 136 2.45e-13 66.6
MS.gene063282.t1 AT3G44290 30.597 134 77 6 6 132 16 140 2.75e-13 65.9
MS.gene063282.t1 AT3G15500 28.070 171 104 7 4 164 14 175 3.52e-13 66.6
MS.gene063282.t1 AT5G39610 29.630 162 93 6 4 153 20 172 4.09e-13 65.9
MS.gene063282.t1 AT2G02450 33.553 152 85 7 6 149 53 196 4.27e-13 66.6
MS.gene063282.t1 AT3G44290 29.730 148 85 7 6 146 16 151 4.86e-13 66.2
MS.gene063282.t1 AT2G02450 34.211 152 84 7 6 149 53 196 5.31e-13 66.2
MS.gene063282.t1 AT5G66300 26.347 167 108 5 4 161 12 172 6.10e-13 65.5
MS.gene063282.t1 AT4G10350 32.903 155 88 7 5 149 10 158 8.12e-13 65.5
MS.gene063282.t1 AT1G52890 27.545 167 100 7 4 159 14 170 1.22e-12 65.1
MS.gene063282.t1 AT3G49530 25.904 166 103 7 1 154 10 167 1.72e-12 64.7
MS.gene063282.t1 AT3G49530 25.904 166 103 7 1 154 10 167 2.23e-12 64.7
MS.gene063282.t1 AT3G29035 30.864 162 91 7 4 153 24 176 3.14e-12 63.9
MS.gene063282.t1 AT5G61430 28.395 162 95 6 4 153 16 168 3.21e-12 63.9
MS.gene063282.t1 AT3G04060 27.513 189 110 8 4 174 20 199 4.73e-12 63.5
MS.gene063282.t1 AT5G07680 28.834 163 93 7 4 153 17 169 5.51e-12 63.2
MS.gene063282.t1 AT5G07680 28.834 163 93 7 4 153 3 155 6.64e-12 62.8
MS.gene063282.t1 AT5G18270 28.750 160 92 7 4 150 21 171 1.10e-11 62.4
MS.gene063282.t1 AT5G04395 29.605 152 86 6 4 138 28 175 1.25e-11 60.8
MS.gene063282.t1 AT5G18270 28.125 160 93 7 4 150 21 171 3.59e-11 60.8
MS.gene063282.t1 AT3G12910 30.435 138 75 6 6 132 23 150 6.56e-11 60.1
MS.gene063282.t1 AT1G33280 30.882 136 82 4 5 134 9 138 8.28e-11 59.7
MS.gene063282.t1 AT4G28530 26.506 166 99 4 4 150 10 171 9.38e-11 59.7

Find 38 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGCTTAAGCATGCACTTC+TGG 0.248003 1.4:+3976239 MS.gene063282:CDS
CAATGGTTCTGAGCTAATTA+AGG 0.256935 1.4:+3974823 MS.gene063282:CDS
GGTACTGTAAGACAGGATTT+TGG 0.279481 1.4:+3974957 MS.gene063282:CDS
GGAGCTGATAACGTGGTTCT+AGG 0.360842 1.4:+3975013 MS.gene063282:CDS
GAAGAGATTCAGAATTTCAA+TGG 0.424440 1.4:+3974806 MS.gene063282:CDS
GGAGTAAGACGCAATTCAAA+TGG 0.431789 1.4:-3974869 None:intergenic
GCAATTCAAATGGGTCATAC+TGG 0.459319 1.4:-3974859 None:intergenic
TGCAATGGAATTGTTTCCAC+CGG 0.467560 1.4:+3974721 None:intergenic
CAGAGGAGGTACTGTAAGAC+AGG 0.478625 1.4:+3974950 MS.gene063282:CDS
CCTCCTCTGCTCATCAACTT+TGG 0.480636 1.4:-3974936 None:intergenic
GTGAAGCAATAAAATTCCCT+TGG 0.488088 1.4:-3974911 None:intergenic
CAAATGGGTCATACTGGTAC+AGG 0.492656 1.4:-3974853 None:intergenic
GAATTGTTTCCACCGGGCGT+TGG 0.507607 1.4:+3974728 MS.gene063282:CDS
CCTTGGGTGACGGAAGGAAA+AGG 0.509656 1.4:-3974894 None:intergenic
AGTGCATGCTTAAGCTGCTC+CGG 0.526169 1.4:-3976234 None:intergenic
AATAAAATTCCCTTGGGTGA+CGG 0.537471 1.4:-3974904 None:intergenic
GAAGGGACGAAGCCAACGCC+CGG 0.541295 1.4:-3974740 None:intergenic
CACTCTTGCTAACAAGCCTC+AGG 0.544263 1.4:+3975114 MS.gene063282:CDS
TGGACGCTGTCAAAACCAGC+TGG 0.550147 1.4:+3975077 MS.gene063282:CDS
TGAAGCAATAAAATTCCCTT+GGG 0.552712 1.4:-3974910 None:intergenic
CCACATGGAAGCTATGACAC+CGG 0.554580 1.4:+3976215 MS.gene063282:CDS
GAGTAAGACGCAATTCAAAT+GGG 0.556312 1.4:-3974868 None:intergenic
GCTGTTCGAGACATTACCGT+TGG 0.568138 1.4:+3974992 MS.gene063282:CDS
AAATTCCCTTGGGTGACGGA+AGG 0.596649 1.4:-3974900 None:intergenic
GTACTCGTACATAGTCCAGC+TGG 0.603542 1.4:-3975092 None:intergenic
CTAACAAGGAGCTCATCAGA+AGG 0.607644 1.4:-3974758 None:intergenic
TAACAAGGAGCTCATCAGAA+GGG 0.608778 1.4:-3974757 None:intergenic
CCAAAGTTGATGAGCAGAGG+AGG 0.609229 1.4:+3974936 MS.gene063282:CDS
TGACTGTGTTGTCTTCCACA+TGG 0.610846 1.4:+3976200 MS.gene063282:CDS
CTATTTAGGAAATTCACCGA+TGG 0.613156 1.4:+3975057 MS.gene063282:CDS
TGGCAAGGTAGTAGCTAACA+AGG 0.615826 1.4:-3974772 None:intergenic
CTGCCAAAGTTGATGAGCAG+AGG 0.624165 1.4:+3974933 MS.gene063282:CDS
AACCACGTTATCAGCTCCAA+CGG 0.626095 1.4:-3975008 None:intergenic
GCAATGGAATTGTTTCCACC+GGG 0.631263 1.4:+3974722 None:intergenic
GGGTGACGGAAGGAAAAGGA+TGG 0.637555 1.4:-3974890 None:intergenic
GGGACGAAGCCAACGCCCGG+TGG 0.649732 1.4:-3974737 None:intergenic
TACCGTTGGAGCTGATAACG+TGG 0.651576 1.4:+3975006 MS.gene063282:CDS
CCGGTGTCATAGCTTCCATG+TGG 0.695251 1.4:-3976215 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGAAATTTTAAAGATT+CGG - chr1.4:3975856-3975875 None:intergenic 10.0%
!! GATAAAATTTATCAAAACTT+TGG + chr1.4:3975705-3975724 MS.gene063282:intron 15.0%
!! TCAATGATTAATTAATGTAT+TGG + chr1.4:3975182-3975201 MS.gene063282:intron 15.0%
!! AATATATAGAGAGAACAAAA+TGG - chr1.4:3975477-3975496 None:intergenic 20.0%
!! ATATGTACTTGATTGATATT+GGG + chr1.4:3975561-3975580 MS.gene063282:intron 20.0%
!! TATTTATGATGAATTTGTCA+TGG - chr1.4:3976045-3976064 None:intergenic 20.0%
!! TGATGAAATAAAGAACAAAA+GGG - chr1.4:3975165-3975184 None:intergenic 20.0%
!! TTATATATAAATAATCGTGC+AGG + chr1.4:3975221-3975240 MS.gene063282:intron 20.0%
!! TTGATGAAATAAAGAACAAA+AGG - chr1.4:3975166-3975185 None:intergenic 20.0%
!! TTGGCTTCTTAAAAAAAAAT+CGG + chr1.4:3975783-3975802 MS.gene063282:intron 20.0%
!!! CAACTTTTCATTTCATTTTA+TGG + chr1.4:3976096-3976115 MS.gene063282:intron 20.0%
! CATATGTACTTGATTGATAT+TGG + chr1.4:3975560-3975579 MS.gene063282:intron 25.0%
! TGGCTTCTTAAAAAAAAATC+GGG + chr1.4:3975784-3975803 MS.gene063282:intron 25.0%
!! ATTTTATGGTAGAGACAATA+AGG + chr1.4:3976110-3976129 MS.gene063282:intron 25.0%
!! TCTCTCTTCTTTTTCTATTT+AGG + chr1.4:3975043-3975062 MS.gene063282:CDS 25.0%
!!! AATCTCTTCATTGTTTTTGT+TGG - chr1.4:3974795-3974814 None:intergenic 25.0%
!!! GTTTTGTTTTGATGTTTATC+AGG + chr1.4:3976158-3976177 MS.gene063282:intron 25.0%
AAAATGTTGCGATTGAATGT+GGG + chr1.4:3975597-3975616 MS.gene063282:intron 30.0%
ACATGTTACAATCACATGAA+TGG - chr1.4:3975893-3975912 None:intergenic 30.0%
GAAATAAAGAACAAAAGGGA+AGG - chr1.4:3975161-3975180 None:intergenic 30.0%
GAAGAGATTCAGAATTTCAA+TGG + chr1.4:3974806-3974825 MS.gene063282:CDS 30.0%
TAAAATGTTGCGATTGAATG+TGG + chr1.4:3975596-3975615 MS.gene063282:intron 30.0%
TGAAGCAATAAAATTCCCTT+GGG - chr1.4:3974913-3974932 None:intergenic 30.0%
! CTCATTAGTGTCAATTTTGT+GGG + chr1.4:3975755-3975774 MS.gene063282:intron 30.0%
! TCTCATTAGTGTCAATTTTG+TGG + chr1.4:3975754-3975773 MS.gene063282:intron 30.0%
!! TATGGCCAATTTTTAATTCG+TGG + chr1.4:3975647-3975666 MS.gene063282:intron 30.0%
AACACACGACAAACAACAAA+AGG - chr1.4:3975249-3975268 None:intergenic 35.0%
AATAAAATTCCCTTGGGTGA+CGG - chr1.4:3974907-3974926 None:intergenic 35.0%
AGCGACCACGAATTAAAAAT+TGG - chr1.4:3975655-3975674 None:intergenic 35.0%
ATGGATCTAAAAGGTGAGTT+CGG + chr1.4:3975285-3975304 MS.gene063282:intron 35.0%
CATCAAAATCAGTGATGTTG+TGG - chr1.4:3975623-3975642 None:intergenic 35.0%
CTATTTAGGAAATTCACCGA+TGG + chr1.4:3975057-3975076 MS.gene063282:CDS 35.0%
GAGTAAGACGCAATTCAAAT+GGG - chr1.4:3974871-3974890 None:intergenic 35.0%
GTGAAGCAATAAAATTCCCT+TGG - chr1.4:3974914-3974933 None:intergenic 35.0%
! ACAGGATTTTGGATGCAAAA+GGG + chr1.4:3974968-3974987 MS.gene063282:CDS 35.0%
! GTCAATTTTGTGGGATAACT+TGG + chr1.4:3975764-3975783 MS.gene063282:intron 35.0%
!! AATTTTTAATTCGTGGTCGC+TGG + chr1.4:3975654-3975673 MS.gene063282:intron 35.0%
!! CAATGGTTCTGAGCTAATTA+AGG + chr1.4:3974823-3974842 MS.gene063282:CDS 35.0%
!!! CACTGATTTTGATGTCTGTA+TGG + chr1.4:3975629-3975648 MS.gene063282:intron 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG - chr1.4:3974790-3974809 None:intergenic 35.0%
AAGCCTCAGGTATGACATTT+GGG + chr1.4:3975127-3975146 MS.gene063282:intron 40.0%
AGGACGTGATTTGAAGAATC+TGG - chr1.4:3976001-3976020 None:intergenic 40.0%
GCAATTCAAATGGGTCATAC+TGG - chr1.4:3974862-3974881 None:intergenic 40.0%
GGAGTAAGACGCAATTCAAA+TGG - chr1.4:3974872-3974891 None:intergenic 40.0%
TAACAAGGAGCTCATCAGAA+GGG - chr1.4:3974760-3974779 None:intergenic 40.0%
TTTCCCAAATGTCATACCTG+AGG - chr1.4:3975133-3975152 None:intergenic 40.0%
! GACAGGATTTTGGATGCAAA+AGG + chr1.4:3974967-3974986 MS.gene063282:CDS 40.0%
! GGTACTGTAAGACAGGATTT+TGG + chr1.4:3974957-3974976 MS.gene063282:CDS 40.0%
AACCACGTTATCAGCTCCAA+CGG - chr1.4:3975011-3975030 None:intergenic 45.0%
AGGTGATGCATCGTATTTGC+AGG + chr1.4:3975440-3975459 MS.gene063282:intron 45.0%
ATGTCGCTCAGAAACCTATG+GGG + chr1.4:3975355-3975374 MS.gene063282:intron 45.0%
CAAATGGGTCATACTGGTAC+AGG - chr1.4:3974856-3974875 None:intergenic 45.0%
CAAGCCTCAGGTATGACATT+TGG + chr1.4:3975126-3975145 MS.gene063282:intron 45.0%
CTAACAAGGAGCTCATCAGA+AGG - chr1.4:3974761-3974780 None:intergenic 45.0%
GATGTCGCTCAGAAACCTAT+GGG + chr1.4:3975354-3975373 MS.gene063282:intron 45.0%
TGACTGTGTTGTCTTCCACA+TGG + chr1.4:3976200-3976219 MS.gene063282:CDS 45.0%
TGATGTCGCTCAGAAACCTA+TGG + chr1.4:3975353-3975372 MS.gene063282:intron 45.0%
TGGCAAGGTAGTAGCTAACA+AGG - chr1.4:3974775-3974794 None:intergenic 45.0%
! CTTTTAGATCCATCCCTGGT+GGG - chr1.4:3975278-3975297 None:intergenic 45.0%
! TCACCTTTTAGATCCATCCC+TGG - chr1.4:3975282-3975301 None:intergenic 45.0%
!! AAAAAAATTTAAAGAAAAAA+AGG - chr1.4:3976021-3976040 None:intergenic 5.0%
AGTGCATGCTTAAGCTGCTC+CGG - chr1.4:3976237-3976256 None:intergenic 50.0%
CACTCTTGCTAACAAGCCTC+AGG + chr1.4:3975114-3975133 MS.gene063282:CDS 50.0%
CCACATGGAAGCTATGACAC+CGG + chr1.4:3976215-3976234 MS.gene063282:CDS 50.0%
CCACCAGGGATGGATCTAAA+AGG + chr1.4:3975276-3975295 MS.gene063282:intron 50.0%
CCTCCTCTGCTCATCAACTT+TGG - chr1.4:3974939-3974958 None:intergenic 50.0%
GCAGCTTAAGCATGCACTTC+TGG + chr1.4:3976239-3976258 MS.gene063282:CDS 50.0%
GCCTTCTTCAACATCCGTCA+AGG - chr1.4:3975313-3975332 None:intergenic 50.0%
GCTGTTCGAGACATTACCGT+TGG + chr1.4:3974992-3975011 MS.gene063282:CDS 50.0%
GTACTCGTACATAGTCCAGC+TGG - chr1.4:3975095-3975114 None:intergenic 50.0%
TGTCGCTCAGAAACCTATGG+GGG + chr1.4:3975356-3975375 MS.gene063282:intron 50.0%
! CCTTTTAGATCCATCCCTGG+TGG - chr1.4:3975279-3975298 None:intergenic 50.0%
! CTTTTCCTTCCGTCACCCAA+GGG + chr1.4:3974895-3974914 MS.gene063282:CDS 50.0%
! GCCTTGACGGATGTTGAAGA+AGG + chr1.4:3975309-3975328 MS.gene063282:intron 50.0%
! GGAGCTGATAACGTGGTTCT+AGG + chr1.4:3975013-3975032 MS.gene063282:CDS 50.0%
! TACCGTTGGAGCTGATAACG+TGG + chr1.4:3975006-3975025 MS.gene063282:CDS 50.0%
!! AAATTCCCTTGGGTGACGGA+AGG - chr1.4:3974903-3974922 None:intergenic 50.0%
!! CAGAGGAGGTACTGTAAGAC+AGG + chr1.4:3974950-3974969 MS.gene063282:CDS 50.0%
!! CCAAAGTTGATGAGCAGAGG+AGG + chr1.4:3974936-3974955 MS.gene063282:CDS 50.0%
!! CTGCCAAAGTTGATGAGCAG+AGG + chr1.4:3974933-3974952 MS.gene063282:CDS 50.0%
!!! CTGGTTTTGACAGCGTCCAT+CGG - chr1.4:3975076-3975095 None:intergenic 50.0%
AGGTGAGTTCGGAGCCTTGA+CGG + chr1.4:3975296-3975315 MS.gene063282:intron 55.0%
GAATTGTTTCCACCGGGCGT+TGG + chr1.4:3974728-3974747 MS.gene063282:CDS 55.0%
GTGTGTTTGACTGCCCACCA+GGG + chr1.4:3975262-3975281 MS.gene063282:intron 55.0%
GTTGAAGAAGGCGATGCTGC+TGG + chr1.4:3975321-3975340 MS.gene063282:intron 55.0%
TGGACGCTGTCAAAACCAGC+TGG + chr1.4:3975077-3975096 MS.gene063282:CDS 55.0%
! CCTTTTCCTTCCGTCACCCA+AGG + chr1.4:3974894-3974913 MS.gene063282:CDS 55.0%
!! CCGGTGTCATAGCTTCCATG+TGG - chr1.4:3976218-3976237 None:intergenic 55.0%
!! CCTTGGGTGACGGAAGGAAA+AGG - chr1.4:3974897-3974916 None:intergenic 55.0%
!! GGGTGACGGAAGGAAAAGGA+TGG - chr1.4:3974893-3974912 None:intergenic 55.0%
CGTGTGTTTGACTGCCCACC+AGG + chr1.4:3975261-3975280 MS.gene063282:intron 60.0%
GCTCAGAAACCTATGGGGGC+TGG + chr1.4:3975360-3975379 MS.gene063282:intron 60.0%
GTTTGACTGCCCACCAGGGA+TGG + chr1.4:3975266-3975285 MS.gene063282:intron 60.0%
!! GCTGGTTCTGCTGCTGATGC+TGG + chr1.4:3975402-3975421 MS.gene063282:intron 60.0%
GAAGGGACGAAGCCAACGCC+CGG - chr1.4:3974743-3974762 None:intergenic 65.0%
GCACTAGCACCAGCCCCCAT+AGG - chr1.4:3975372-3975391 None:intergenic 65.0%
! GCTAGTGCTGCTGCTGGTGC+TGG + chr1.4:3975384-3975403 MS.gene063282:intron 65.0%
! GCTGGTCGTGCTGCTGAGCA+AGG + chr1.4:3975420-3975439 MS.gene063282:intron 65.0%
! GCTGGTGCTAGTGCTGCTGC+TGG + chr1.4:3975378-3975397 MS.gene063282:intron 65.0%
GGGACGAAGCCAACGCCCGG+TGG - chr1.4:3974740-3974759 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 3974725 3976296 3974725 ID=MS.gene063282
chr1.4 mRNA 3974725 3976296 3974725 ID=MS.gene063282.t1;Parent=MS.gene063282
chr1.4 exon 3974725 3975135 3974725 ID=MS.gene063282.t1.exon1;Parent=MS.gene063282.t1
chr1.4 CDS 3974725 3975135 3974725 ID=cds.MS.gene063282.t1;Parent=MS.gene063282.t1
chr1.4 exon 3976180 3976296 3976180 ID=MS.gene063282.t1.exon2;Parent=MS.gene063282.t1
chr1.4 CDS 3976180 3976296 3976180 ID=cds.MS.gene063282.t1;Parent=MS.gene063282.t1
Gene Sequence

>MS.gene063282

ATGGAATTGTTTCCACCGGGCGTTGGCTTCGTCCCTTCTGATGAGCTCCTTGTTAGCTACTACCTTGCCAACAAAAACAATGAAGAGATTCAGAATTTCAATGGTTCTGAGCTAATTAAGGAGCTGAACCTGTACCAGTATGACCCATTTGAATTGCGTCTTACTCCATCCTTTTCCTTCCGTCACCCAAGGGAATTTTATTGCTTCACTGCCAAAGTTGATGAGCAGAGGAGGTACTGTAAGACAGGATTTTGGATGCAAAAGGGAGCTGTTCGAGACATTACCGTTGGAGCTGATAACGTGGTTCTAGGAAAGAAGTCTCTCTTCTTTTTCTATTTAGGAAATTCACCGATGGACGCTGTCAAAACCAGCTGGACTATGTACGAGTACACTCTTGCTAACAAGCCTCAGGTATGACATTTGGGAAAACTAACCTTCCCTTTTGTTCTTTATTTCATCAATGATTAATTAATGTATTGGTAACTACTAACTATTTTTATATATAAATAATCGTGCAGGCTCCTTTTGTTGTTTGTCGTGTGTTTGACTGCCCACCAGGGATGGATCTAAAAGGTGAGTTCGGAGCCTTGACGGATGTTGAAGAAGGCGATGCTGCTGGCGATGACTCTGATGTCGCTCAGAAACCTATGGGGGCTGGTGCTAGTGCTGCTGCTGGTGCTGGTTCTGCTGCTGATGCTGGTCGTGCTGCTGAGCAAGGTGATGCATCGTATTTGCAGGTAAAATATATTCCATTTTGTTCTCTCTATATATTTTGTTGTCAGTTAGAATTTTAGAATAGTTGAATGTGTCATAAATCATAATTTTTTTTTTGTTGCATATGTACTTGATTGATATTGGGCATAAGTTTTAATAAAATGTTGCGATTGAATGTGGGCCACAACATCACTGATTTTGATGTCTGTATGGCCAATTTTTAATTCGTGGTCGCTGGCTATTGCATCACAAACATTGACAGTGTAGATAAAATTTATCAAAACTTTGGTTTAATTTCAAGTTTTCATATTCGATTCTCATTAGTGTCAATTTTGTGGGATAACTTGGCTTCTTAAAAAAAAATCGGGTTATTGTTAAAAGTCAATCAATTAACGTTGTTGATGTTCTTTGCAACCGAATCTTTAAAATTTCAAAAAATTTACAACTCAATCCATTCATGTGATTGTAACATGTCAAAATGTCAACTTGTGTGTAGAAATTAAGTGATAGTAATTCTCAAAACATATAGCAATTGATTAAGTTAACGTAGCTATTCTTACCAGATTCTTCAAATCACGTCCTTTTTTTCTTTAAATTTTTTTGCCATGACAAATTCATCATAAATATTGTTGTTGTTGTCGTCACTTTTTGACAATGCAACTTTTCATTTCATTTTATGGTAGAGACAATAAGGTATTGTTGAAATATTGAATTGCTTTGTTTTGTTTTGATGTTTATCAGGCGAGTTATGCTGCATTTCTTGACTGTGTTGTCTTCCACATGGAAGCTATGACACCGGAGCAGCTTAAGCATGCACTTCTGGACGAAGATTTTCTTGAACTCGCTGATTTTGTATAA
Protein sequence

>MS.gene063282.t1

MELFPPGVGFVPSDELLVSYYLANKNNEEIQNFNGSELIKELNLYQYDPFELRLTPSFSFRHPREFYCFTAKVDEQRRYCKTGFWMQKGAVRDITVGADNVVLGKKSLFFFYLGNSPMDAVKTSWTMYEYTLANKPQASYAAFLDCVVFHMEAMTPEQLKHALLDEDFLELADFV