AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063508


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063508.t1 MTR_4g109770 96.383 470 17 0 1 470 1 470 0.0 939
MS.gene063508.t1 MTR_2g461920 62.272 493 147 11 12 470 52 539 1.26e-172 496
MS.gene063508.t1 MTR_5g046670 49.315 219 88 8 56 264 174 379 1.35e-50 179
MS.gene063508.t1 MTR_3g099080 54.348 138 42 4 75 198 43 173 4.03e-38 143
MS.gene063508.t1 MTR_7g028740 35.331 317 179 8 75 382 26 325 7.89e-38 142
MS.gene063508.t1 MTR_8g096780 38.194 288 132 11 75 339 45 309 1.08e-36 139
MS.gene063508.t1 MTR_7g092930 69.136 81 25 0 117 197 62 142 7.00e-34 130
MS.gene063508.t1 MTR_7g444860 75.676 74 18 0 123 196 149 222 7.18e-34 130
MS.gene063508.t1 MTR_3g085180 50.769 130 57 2 72 198 115 240 8.48e-34 132
MS.gene063508.t1 MTR_1g053715 38.197 233 106 6 123 351 74 272 1.87e-33 129
MS.gene063508.t1 MTR_8g005960 73.684 76 20 0 123 198 187 262 4.55e-33 128
MS.gene063508.t1 MTR_4g088555 72.973 74 20 0 123 196 63 136 7.87e-33 122
MS.gene063508.t1 MTR_2g014200 70.886 79 23 0 118 196 59 137 3.24e-32 120
MS.gene063508.t1 MTR_8g463140 70.270 74 22 0 123 196 65 138 2.83e-31 119
MS.gene063508.t1 MTR_2g078770 70.270 74 22 0 123 196 58 131 1.23e-30 117
MS.gene063508.t1 MTR_7g110320 69.737 76 23 0 121 196 143 218 1.46e-30 125
MS.gene063508.t1 MTR_2g046550 45.946 148 69 3 58 196 67 212 2.41e-30 125
MS.gene063508.t1 MTR_7g110320 69.737 76 23 0 121 196 143 218 2.63e-30 125
MS.gene063508.t1 MTR_1g035010 62.366 93 31 1 110 198 87 179 1.53e-29 123
MS.gene063508.t1 MTR_1g086250 69.737 76 23 0 121 196 145 220 1.86e-29 122
MS.gene063508.t1 MTR_8g080680 36.607 224 103 8 122 339 131 321 3.11e-28 116
MS.gene063508.t1 MTR_8g080690 63.158 76 28 0 123 198 151 226 5.49e-28 115
MS.gene063508.t1 MTR_8g080670 61.644 73 28 0 123 195 162 234 4.33e-25 107
MS.gene063508.t1 MTR_2g020620 51.562 64 31 0 133 196 100 163 2.28e-16 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063508.t1 AT1G69170 64.286 126 32 3 75 197 83 198 8.83e-45 162
MS.gene063508.t1 AT5G50670 46.067 178 84 4 123 288 101 278 2.50e-37 140
MS.gene063508.t1 AT5G50670 46.067 178 84 4 123 288 101 278 2.50e-37 140
MS.gene063508.t1 AT5G50570 46.067 178 84 4 123 288 101 278 2.50e-37 140
MS.gene063508.t1 AT5G50570 46.067 178 84 4 123 288 101 278 2.50e-37 140
MS.gene063508.t1 AT1G27370 68.966 87 27 0 123 209 176 262 2.30e-36 137
MS.gene063508.t1 AT1G27370 68.966 87 27 0 123 209 176 262 6.18e-36 137
MS.gene063508.t1 AT1G27370 68.966 87 27 0 123 209 176 262 6.18e-36 137
MS.gene063508.t1 AT1G27370 68.966 87 27 0 123 209 176 262 6.18e-36 137
MS.gene063508.t1 AT1G27370 68.966 87 27 0 123 209 176 262 6.18e-36 137
MS.gene063508.t1 AT1G27370 68.966 87 27 0 123 209 176 262 6.18e-36 137
MS.gene063508.t1 AT1G27370 68.966 87 27 0 123 209 176 262 6.18e-36 137
MS.gene063508.t1 AT1G27360 46.429 168 65 4 53 209 108 261 4.73e-35 135
MS.gene063508.t1 AT1G27360 46.429 168 65 4 53 209 108 261 4.73e-35 135
MS.gene063508.t1 AT1G27360 46.429 168 65 4 53 209 108 261 4.73e-35 135
MS.gene063508.t1 AT1G27360 46.429 168 65 4 53 209 108 261 4.73e-35 135
MS.gene063508.t1 AT5G43270 46.199 171 68 6 48 209 94 249 7.13e-34 132
MS.gene063508.t1 AT5G43270 46.199 171 68 6 48 209 94 249 7.13e-34 132
MS.gene063508.t1 AT5G43270 46.199 171 68 6 48 209 94 249 7.13e-34 132
MS.gene063508.t1 AT2G33810 67.089 79 26 0 118 196 49 127 6.11e-33 122
MS.gene063508.t1 AT3G57920 70.588 85 25 0 114 198 50 134 1.32e-32 127
MS.gene063508.t1 AT2G42200 75.000 76 19 0 123 198 74 149 1.79e-32 127
MS.gene063508.t1 AT1G02065 72.727 77 21 0 120 196 185 261 2.05e-32 126
MS.gene063508.t1 AT2G47070 73.684 76 20 0 121 196 104 179 2.77e-31 128
MS.gene063508.t1 AT3G60030 72.973 74 20 0 123 196 127 200 4.71e-31 127
MS.gene063508.t1 AT1G53160 51.667 120 48 3 123 232 54 173 4.97e-31 118
MS.gene063508.t1 AT1G53160 51.667 120 48 3 123 232 54 173 4.97e-31 118
MS.gene063508.t1 AT1G20980 62.000 100 35 1 110 206 104 203 8.42e-31 127
MS.gene063508.t1 AT1G76580 72.368 76 21 0 123 198 114 189 3.27e-30 124
MS.gene063508.t1 AT1G76580 72.368 76 21 0 123 198 114 189 3.43e-30 124
MS.gene063508.t1 AT1G53160 62.069 87 31 1 123 207 54 140 4.37e-30 115
MS.gene063508.t1 AT1G76580 72.368 76 21 0 123 198 114 189 6.60e-30 124
MS.gene063508.t1 AT3G15270 63.636 77 28 0 123 199 63 139 1.03e-28 112
MS.gene063508.t1 AT5G18830 54.023 87 39 1 112 197 127 213 2.07e-22 101
MS.gene063508.t1 AT5G18830 54.023 87 39 1 112 197 127 213 2.21e-22 101
MS.gene063508.t1 AT5G18830 54.023 87 39 1 112 197 127 213 2.32e-22 100
MS.gene063508.t1 AT2G47070 76.000 50 12 0 147 196 1 50 5.01e-18 87.4
MS.gene063508.t1 AT1G02065 64.706 51 18 0 120 170 185 235 2.48e-16 79.0

Find 96 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCATATTGTCAAGTTTA+TGG 0.148069 8.4:+17919726 MS.gene063508:CDS
AGGTCTTCCAAAGTGGTTTC+TGG 0.202370 8.4:+17921239 MS.gene063508:CDS
GGCGTTCACTCTACAAATTC+TGG 0.217076 8.4:+17920661 MS.gene063508:CDS
CTGCTGGTGGCTTGGTTCCC+TGG 0.251209 8.4:-17921198 None:intergenic
CCAAATTACTTTAAGTAATT+CGG 0.256859 8.4:-17921948 None:intergenic
GGACTGGCTTGAAGTGTTAT+TGG 0.259748 8.4:-17921569 None:intergenic
AGTTATATTTCTGAAGAAAA+AGG 0.280021 8.4:+17919381 MS.gene063508:CDS
CACAAACTTTATGCCTCTTA+TGG 0.303462 8.4:-17919782 None:intergenic
CAAAATAGGTGCTGCTCCTT+TGG 0.306496 8.4:-17919652 None:intergenic
GGGAGACTGTTTCAGCCATT+TGG 0.327396 8.4:+17920682 MS.gene063508:CDS
TATGGCCTGCAAGTCGTTTA+CGG 0.342741 8.4:-17920615 None:intergenic
TCAGATGATTTCAATTTCAT+TGG 0.348900 8.4:+17919447 MS.gene063508:CDS
CCAAGCATTCAAGGATTATC+AGG 0.351371 8.4:+17921505 MS.gene063508:CDS
GCTTCATGTTCTGCTTTCAT+AGG 0.354620 8.4:-17921265 None:intergenic
TCCATCTGTAGGATTTAATT+CGG 0.357577 8.4:-17921701 None:intergenic
TTATTGTCTGGTACCAATAT+AGG 0.364521 8.4:-17921736 None:intergenic
GTTCCAAGCAAGAAACTTGA+TGG 0.403736 8.4:+17919474 MS.gene063508:CDS
TGAGTGCACTCTCACTCTCT+TGG 0.404810 8.4:-17919700 None:intergenic
CATACCGCACCAAGCATTCA+AGG 0.405157 8.4:+17921496 MS.gene063508:CDS
CAAGGATCTTAGTTCTTGTA+AGG 0.406648 8.4:+17919755 MS.gene063508:CDS
TGATATCGTGAACTTTGAAA+TGG 0.410198 8.4:+17921759 MS.gene063508:CDS
GACTCACAAGAAGACAAAAT+AGG 0.410388 8.4:-17919666 None:intergenic
TCTTGCAGATATCAGATTCC+AGG 0.416127 8.4:+17921180 MS.gene063508:intron
AATTCCCTTTGATAACCCTT+TGG 0.423487 8.4:+17921597 MS.gene063508:CDS
CAGAACATGAAGCTGGCTTT+AGG 0.424799 8.4:+17921275 MS.gene063508:CDS
TGTTGCATGCAATGGAATCT+TGG 0.426426 8.4:+17919358 None:intergenic
GAGTGCACTCTCACTCTCTT+GGG 0.430597 8.4:-17919699 None:intergenic
TTACCATCAAGTTTCTTGCT+TGG 0.431934 8.4:-17919477 None:intergenic
AGTTGCCGTAAACGACTTGC+AGG 0.435658 8.4:+17920610 MS.gene063508:CDS
CCTGATAATCCTTGAATGCT+TGG 0.438418 8.4:-17921505 None:intergenic
AAGTCATCTCAGTCCTATAT+TGG 0.441537 8.4:+17921723 MS.gene063508:CDS
ATTCCATTCACAATGACTAT+AGG 0.443748 8.4:-17919822 None:intergenic
CAAAGGGAATTTCCAAGGAC+TGG 0.449402 8.4:-17921585 None:intergenic
TCTCTCATTGATTTGAAGCT+AGG 0.463051 8.4:+17919585 MS.gene063508:CDS
CACAATGACTATAGGAGTCT+TGG 0.465991 8.4:-17919814 None:intergenic
TAACACTTCAAGCCAGTCCT+TGG 0.468157 8.4:+17921573 MS.gene063508:CDS
TCTTCTGTGCCTGTCACCAA+TGG 0.476821 8.4:+17921304 MS.gene063508:CDS
GCATCATAGACAATCATTGC+AGG 0.480777 8.4:+17921894 MS.gene063508:CDS
GCGTTCACTCTACAAATTCT+GGG 0.481125 8.4:+17920662 MS.gene063508:CDS
TTCACGATATCATTATTGTC+TGG 0.484373 8.4:-17921748 None:intergenic
CATTCACAAAATCTGAATCA+TGG 0.487792 8.4:-17921795 None:intergenic
CTAGGAAGATTTGATGATCA+TGG 0.493709 8.4:+17919603 MS.gene063508:CDS
GCCATTGGCTACACCTCCTT+AGG 0.499701 8.4:+17921451 MS.gene063508:CDS
ATTGAAGTCTTCGCTTCCTA+AGG 0.501723 8.4:-17921467 None:intergenic
TATATATTATTACCACCAAA+TGG 0.502996 8.4:-17920697 None:intergenic
AAAAGATGCTGCTGGTGGCT+TGG 0.511710 8.4:-17921206 None:intergenic
TAGACATGGCTATGGCTGCT+TGG 0.512721 8.4:-17921625 None:intergenic
TGTGGTGGAATCCAATGGTT+GGG 0.513935 8.4:+17919560 MS.gene063508:CDS
ACTCCTATAGTCATTGTGAA+TGG 0.516933 8.4:+17919819 MS.gene063508:CDS
TTGCTGTCTGAGTTTGATGA+TGG 0.518570 8.4:+17920580 MS.gene063508:CDS
TCCGAATTAAATCCTACAGA+TGG 0.523648 8.4:+17921700 MS.gene063508:CDS
AATGAGAGAATCCCAACCAT+TGG 0.523865 8.4:-17919571 None:intergenic
AAACCACTTTGGAAGACCTC+TGG 0.529651 8.4:-17921235 None:intergenic
AGCCATTATGCTCATGCCAT+TGG 0.530681 8.4:+17921436 MS.gene063508:CDS
AGCCAATGGCATGAGCATAA+TGG 0.532501 8.4:-17921438 None:intergenic
TAGGTCTCCAGAAACCACTT+TGG 0.532795 8.4:-17921246 None:intergenic
CTTGTAAGGACTACCATAAG+AGG 0.534199 8.4:+17919769 MS.gene063508:CDS
TTTCAAGCTTTCAAATTCTG+TGG 0.537070 8.4:+17919542 MS.gene063508:CDS
TTGCATCATCTTCACAAGAA+AGG 0.541164 8.4:-17921828 None:intergenic
TTATGCTGTAGACATGGCTA+TGG 0.541912 8.4:-17921633 None:intergenic
AATGTTGCCACATCCACTAC+AGG 0.543311 8.4:+17921391 MS.gene063508:CDS
ATAACCAAAGGGTTATCAAA+GGG 0.544827 8.4:-17921601 None:intergenic
CAAGCTTTCAAATTCTGTGG+TGG 0.545205 8.4:+17919545 MS.gene063508:CDS
GTTATCAAAGGGAATTTCCA+AGG 0.547080 8.4:-17921590 None:intergenic
AGACTGTTTCAGCCATTTGG+TGG 0.551343 8.4:+17920685 MS.gene063508:CDS
GGATAGAGAAAAGATGCTGC+TGG 0.557359 8.4:-17921214 None:intergenic
AATAACCAAAGGGTTATCAA+AGG 0.561243 8.4:-17921602 None:intergenic
TGGCTGCTTGGAATAACCAA+AGG 0.562021 8.4:-17921613 None:intergenic
CTGTGGTGGAATCCAATGGT+TGG 0.564108 8.4:+17919559 MS.gene063508:CDS
ATGAAAGCAGAACATGAAGC+TGG 0.566946 8.4:+17921268 MS.gene063508:CDS
GGCTGCTTGGAATAACCAAA+GGG 0.567623 8.4:-17921612 None:intergenic
GAAGTCTTCGCTTCCTAAGG+AGG 0.569996 8.4:-17921464 None:intergenic
GTGAACTTTGAAATGGAAGA+CGG 0.572384 8.4:+17921766 MS.gene063508:CDS
CTTACTGCCTGTAGTGGATG+TGG 0.574967 8.4:-17921398 None:intergenic
TGAACTTTGAAATGGAAGAC+GGG 0.575100 8.4:+17921767 MS.gene063508:CDS
ACTGAACTTACTGCCTGTAG+TGG 0.586429 8.4:-17921404 None:intergenic
CTGAGATGACTTCCATCTGT+AGG 0.587562 8.4:-17921712 None:intergenic
TCTTGATTGAAGATGTCCAT+TGG 0.588804 8.4:-17921320 None:intergenic
TCTATCAGACACTCGGCTTG+AGG 0.591247 8.4:-17921671 None:intergenic
TGAAGATGTCCATTGGTGAC+AGG 0.591626 8.4:-17921313 None:intergenic
CTTGCAGATATCAGATTCCA+GGG 0.591867 8.4:+17921181 MS.gene063508:intron
TGCACTCTCACTCTCTTGGG+AGG 0.598164 8.4:-17919696 None:intergenic
TCCTAAGGAGGTGTAGCCAA+TGG 0.598734 8.4:-17921452 None:intergenic
TATCCAGAGGTCTTCCAAAG+TGG 0.601895 8.4:+17921232 MS.gene063508:CDS
TTGTGAATGGAATTGAGCAG+AGG 0.621516 8.4:+17919832 MS.gene063508:CDS
AATTCTGTGGTGGAATCCAA+TGG 0.627306 8.4:+17919555 MS.gene063508:CDS
TGGCAATGCTTCAATTGATG+CGG 0.627501 8.4:+17919623 MS.gene063508:CDS
TAAGAGGCATAAAGTTTGTG+AGG 0.628037 8.4:+17919785 MS.gene063508:CDS
CGACAGTTGTAGTAAATCGA+TGG 0.628450 8.4:-17921851 None:intergenic
GTGATCTTATGCTGTAGACA+TGG 0.639068 8.4:-17921639 None:intergenic
ATAAAAGTCTATCAGACACT+CGG 0.644463 8.4:-17921678 None:intergenic
TCAAGTTTATGGATGTAACA+AGG 0.656151 8.4:+17919737 MS.gene063508:CDS
TTTGTAGAGTGAACGCCTTG+TGG 0.665425 8.4:-17920655 None:intergenic
TAGAGAAAAGATGCTGCTGG+TGG 0.692709 8.4:-17921211 None:intergenic
TAATCCTTGAATGCTTGGTG+CGG 0.726498 8.4:-17921500 None:intergenic
GAGCGTCGAAGAAAACCACA+AGG 0.736819 8.4:+17920640 MS.gene063508:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAATTAATTTAGTAAAA+TGG - chr8.4:17920079-17920098 None:intergenic 10.0%
!! AAGAAATCAATGTAATTTAA+TGG - chr8.4:17920799-17920818 None:intergenic 15.0%
!! AGAAATCAATGTAATTTAAT+GGG - chr8.4:17920798-17920817 None:intergenic 15.0%
!! GGATACAATTATATAAAAAA+GGG - chr8.4:17920031-17920050 None:intergenic 15.0%
!! TGGATACAATTATATAAAAA+AGG - chr8.4:17920032-17920051 None:intergenic 15.0%
!!! AAACTAATTTTGTTTAAGTT+TGG - chr8.4:17920134-17920153 None:intergenic 15.0%
!!! TGTAAAATTGATTCTATATT+TGG + chr8.4:17919920-17919939 MS.gene063508:intron 15.0%
!! ACTTATTCAACAATAGTTAA+TGG + chr8.4:17920847-17920866 MS.gene063508:intron 20.0%
!! ATTGTTGAATAAGTAACTTA+TGG - chr8.4:17920841-17920860 None:intergenic 20.0%
!! GAAGTAATAAACTTGAAAAT+TGG - chr8.4:17919884-17919903 None:intergenic 20.0%
!! TAGTAACTTAGTTATATGAA+TGG - chr8.4:17920982-17921001 None:intergenic 20.0%
!! TATATATTATTACCACCAAA+TGG - chr8.4:17920700-17920719 None:intergenic 20.0%
!!! AAAATTGATTCTATATTTGG+TGG + chr8.4:17919923-17919942 MS.gene063508:intron 20.0%
!!! AGTTATATTTCTGAAGAAAA+AGG + chr8.4:17919381-17919400 MS.gene063508:CDS 20.0%
!!! ATTTTGTTTAAGTTTGGTTT+TGG - chr8.4:17920128-17920147 None:intergenic 20.0%
! AAAACATGTGATCACAATTT+AGG - chr8.4:17920352-17920371 None:intergenic 25.0%
! ATAGTTATGATATATAGGTC+TGG + chr8.4:17920526-17920545 MS.gene063508:intron 25.0%
! ATTGTAAATAATCACACATG+TGG + chr8.4:17920276-17920295 MS.gene063508:intron 25.0%
! CAAATGAATGTGAAAGAAAA+AGG - chr8.4:17920763-17920782 None:intergenic 25.0%
! GCTGTATAGTTATGATATAT+AGG + chr8.4:17920521-17920540 MS.gene063508:intron 25.0%
! TAGTTATATGAATGGAAACT+CGG - chr8.4:17920974-17920993 None:intergenic 25.0%
! TCAGATGATTTCAATTTCAT+TGG + chr8.4:17919447-17919466 MS.gene063508:CDS 25.0%
!! TAAGAAGCATAGTAATCAAT+AGG - chr8.4:17920444-17920463 None:intergenic 25.0%
!! TTTAGCATCACAATAGTTTT+TGG + chr8.4:17920151-17920170 MS.gene063508:intron 25.0%
!!! AAAATGGATTATGACTAAAG+AGG - chr8.4:17920063-17920082 None:intergenic 25.0%
!!! CATGTTTTTGTTTTAAACCT+TGG + chr8.4:17920364-17920383 MS.gene063508:intron 25.0%
!!! TAATGTTTAGCTTGTTATAC+AGG + chr8.4:17920551-17920570 MS.gene063508:intron 25.0%
!!! TACATTGATTTCTTTTGTTG+TGG + chr8.4:17920805-17920824 MS.gene063508:intron 25.0%
AATAACCAAAGGGTTATCAA+AGG - chr8.4:17921605-17921624 None:intergenic 30.0%
ACTGCATATTGTCAAGTTTA+TGG + chr8.4:17919726-17919745 MS.gene063508:CDS 30.0%
AGAAATTAAGCATCTCCTTA+TGG + chr8.4:17920877-17920896 MS.gene063508:intron 30.0%
AGGCTAAAAATCAATTGTAG+AGG - chr8.4:17919992-17920011 None:intergenic 30.0%
ATAAAAGTCTATCAGACACT+CGG - chr8.4:17921681-17921700 None:intergenic 30.0%
ATAACCAAAGGGTTATCAAA+GGG - chr8.4:17921604-17921623 None:intergenic 30.0%
ATAGTAATCAATAGGTGCAA+AGG - chr8.4:17920436-17920455 None:intergenic 30.0%
ATTCCATTCACAATGACTAT+AGG - chr8.4:17919825-17919844 None:intergenic 30.0%
ATTTCTAACTAGCTGGAATT+TGG + chr8.4:17919958-17919977 MS.gene063508:intron 30.0%
CATTCACAAAATCTGAATCA+TGG - chr8.4:17921798-17921817 None:intergenic 30.0%
CGAATGTTGAAAACAAAACA+AGG - chr8.4:17920405-17920424 None:intergenic 30.0%
GAAGTTTATGATTGACCATA+AGG - chr8.4:17920895-17920914 None:intergenic 30.0%
TAGTAATCAATAGGTGCAAA+GGG - chr8.4:17920435-17920454 None:intergenic 30.0%
TATGATTTGATACGATCCTA+TGG + chr8.4:17921156-17921175 MS.gene063508:intron 30.0%
TCAAGTTTATGGATGTAACA+AGG + chr8.4:17919737-17919756 MS.gene063508:CDS 30.0%
TCATGTTCTAGTATTCCAAT+AGG - chr8.4:17920185-17920204 None:intergenic 30.0%
TCCATCTGTAGGATTTAATT+CGG - chr8.4:17921704-17921723 None:intergenic 30.0%
TGACTAAAGAGGTTAATGTT+TGG - chr8.4:17920052-17920071 None:intergenic 30.0%
TTATTGTCTGGTACCAATAT+AGG - chr8.4:17921739-17921758 None:intergenic 30.0%
TTCACGATATCATTATTGTC+TGG - chr8.4:17921751-17921770 None:intergenic 30.0%
TTTCAAGCTTTCAAATTCTG+TGG + chr8.4:17919542-17919561 MS.gene063508:CDS 30.0%
! AAGTGAGTTTTCTGTAAAAG+GGG + chr8.4:17919512-17919531 MS.gene063508:CDS 30.0%
! ACTAAAAAAGCATAGGAAAC+TGG - chr8.4:17921115-17921134 None:intergenic 30.0%
! ACTATACAGCTTCTTATTTG+AGG - chr8.4:17920511-17920530 None:intergenic 30.0%
! ATTTTGCATTTCTAACTAGC+TGG + chr8.4:17919951-17919970 MS.gene063508:intron 30.0%
! CAAGTGAGTTTTCTGTAAAA+GGG + chr8.4:17919511-17919530 MS.gene063508:CDS 30.0%
! CTTTTACAGAAAACTCACTT+GGG - chr8.4:17919512-17919531 None:intergenic 30.0%
! GCAACATTTTCATGAAGAAA+GGG - chr8.4:17921379-17921398 None:intergenic 30.0%
! TAGGCTTTTGTGAAATGTTT+GGG + chr8.4:17919415-17919434 MS.gene063508:CDS 30.0%
! TCAGATGACTAAAAAAGCAT+AGG - chr8.4:17921122-17921141 None:intergenic 30.0%
! TGATATCGTGAACTTTGAAA+TGG + chr8.4:17921759-17921778 MS.gene063508:CDS 30.0%
! TTAGGCTTTTGTGAAATGTT+TGG + chr8.4:17919414-17919433 MS.gene063508:CDS 30.0%
! TTTTACATGGTACAACACTA+AGG - chr8.4:17921006-17921025 None:intergenic 30.0%
!! AATTGTTTTTCGTTGTACGA+AGG - chr8.4:17921355-17921374 None:intergenic 30.0%
!! GAAAAAGGTTCTGAAGAATT+AGG + chr8.4:17919396-17919415 MS.gene063508:CDS 30.0%
!!! ATGAGCAGGGTTTTAAATTA+TGG + chr8.4:17920228-17920247 MS.gene063508:intron 30.0%
!!! TTGTTTTAAACCTTGGTCTT+GGG + chr8.4:17920371-17920390 MS.gene063508:intron 30.0%
!!! TTTGTTTTAAACCTTGGTCT+TGG + chr8.4:17920370-17920389 MS.gene063508:intron 30.0%
AAGTCATCTCAGTCCTATAT+TGG + chr8.4:17921723-17921742 MS.gene063508:CDS 35.0%
ACTCCTATAGTCATTGTGAA+TGG + chr8.4:17919819-17919838 MS.gene063508:CDS 35.0%
AGGGTTGAGCAATAAATTAG+AGG - chr8.4:17920012-17920031 None:intergenic 35.0%
CACAAACTTTATGCCTCTTA+TGG - chr8.4:17919785-17919804 None:intergenic 35.0%
CTAAGTAGAAACATGACTGA+AGG - chr8.4:17920479-17920498 None:intergenic 35.0%
GACTCACAAGAAGACAAAAT+AGG - chr8.4:17919669-17919688 None:intergenic 35.0%
GTTATCAAAGGGAATTTCCA+AGG - chr8.4:17921593-17921612 None:intergenic 35.0%
GTTGAATTATGTCATGAGCA+GGG + chr8.4:17920215-17920234 MS.gene063508:intron 35.0%
TCATTCTGTAAGAAAGCAGA+TGG - chr8.4:17920917-17920936 None:intergenic 35.0%
TCCGAATTAAATCCTACAGA+TGG + chr8.4:17921700-17921719 MS.gene063508:CDS 35.0%
TCTTGATTGAAGATGTCCAT+TGG - chr8.4:17921323-17921342 None:intergenic 35.0%
TGAATGGAAACTCGGAATTT+AGG - chr8.4:17920966-17920985 None:intergenic 35.0%
TGTTGAATTATGTCATGAGC+AGG + chr8.4:17920214-17920233 MS.gene063508:intron 35.0%
TTACCATCAAGTTTCTTGCT+TGG - chr8.4:17919480-17919499 None:intergenic 35.0%
TTGCATCATCTTCACAAGAA+AGG - chr8.4:17921831-17921850 None:intergenic 35.0%
! AATTCCCTTTGATAACCCTT+TGG + chr8.4:17921597-17921616 MS.gene063508:CDS 35.0%
! CAAGGATCTTAGTTCTTGTA+AGG + chr8.4:17919755-17919774 MS.gene063508:CDS 35.0%
! CCAAGTGAGTTTTCTGTAAA+AGG + chr8.4:17919510-17919529 MS.gene063508:CDS 35.0%
! CCTTTTACAGAAAACTCACT+TGG - chr8.4:17919513-17919532 None:intergenic 35.0%
! CTAGGAAGATTTGATGATCA+TGG + chr8.4:17919603-17919622 MS.gene063508:CDS 35.0%
! CTTCAGTCATGTTTCTACTT+AGG + chr8.4:17920477-17920496 MS.gene063508:intron 35.0%
! CTTTTTCCCATTTCTAACGA+GGG - chr8.4:17921052-17921071 None:intergenic 35.0%
! GGCAACATTTTCATGAAGAA+AGG - chr8.4:17921380-17921399 None:intergenic 35.0%
! TAAGAGGCATAAAGTTTGTG+AGG + chr8.4:17919785-17919804 MS.gene063508:CDS 35.0%
! TCTTTTTCCCATTTCTAACG+AGG - chr8.4:17921053-17921072 None:intergenic 35.0%
! TTTTCGTTGTACGAAGGAAA+CGG - chr8.4:17921349-17921368 None:intergenic 35.0%
!! GTGAACTTTGAAATGGAAGA+CGG + chr8.4:17921766-17921785 MS.gene063508:CDS 35.0%
!! TCTCTCATTGATTTGAAGCT+AGG + chr8.4:17919585-17919604 MS.gene063508:CDS 35.0%
!! TGAACTTTGAAATGGAAGAC+GGG + chr8.4:17921767-17921786 MS.gene063508:CDS 35.0%
AATGAGAGAATCCCAACCAT+TGG - chr8.4:17919574-17919593 None:intergenic 40.0%
ATGAAAGCAGAACATGAAGC+TGG + chr8.4:17921268-17921287 MS.gene063508:CDS 40.0%
ATTGAAGTCTTCGCTTCCTA+AGG - chr8.4:17921470-17921489 None:intergenic 40.0%
CAAGCTTTCAAATTCTGTGG+TGG + chr8.4:17919545-17919564 MS.gene063508:CDS 40.0%
CACAATGACTATAGGAGTCT+TGG - chr8.4:17919817-17919836 None:intergenic 40.0%
CCAAGCATTCAAGGATTATC+AGG + chr8.4:17921505-17921524 MS.gene063508:CDS 40.0%
CCTGATAATCCTTGAATGCT+TGG - chr8.4:17921508-17921527 None:intergenic 40.0%
CGACAGTTGTAGTAAATCGA+TGG - chr8.4:17921854-17921873 None:intergenic 40.0%
CTGATATCTGCAAGAACCAT+AGG - chr8.4:17921175-17921194 None:intergenic 40.0%
CTTGCAGATATCAGATTCCA+GGG + chr8.4:17921181-17921200 MS.gene063508:intron 40.0%
CTTGTAAGGACTACCATAAG+AGG + chr8.4:17919769-17919788 MS.gene063508:CDS 40.0%
GCATCATAGACAATCATTGC+AGG + chr8.4:17921894-17921913 MS.gene063508:CDS 40.0%
GCGTTCACTCTACAAATTCT+GGG + chr8.4:17920662-17920681 MS.gene063508:CDS 40.0%
GCTTCATGTTCTGCTTTCAT+AGG - chr8.4:17921268-17921287 None:intergenic 40.0%
GTGATCTTATGCTGTAGACA+TGG - chr8.4:17921642-17921661 None:intergenic 40.0%
GTTCCAAGCAAGAAACTTGA+TGG + chr8.4:17919474-17919493 MS.gene063508:CDS 40.0%
TCTTGCAGATATCAGATTCC+AGG + chr8.4:17921180-17921199 MS.gene063508:intron 40.0%
TGGCAATGCTTCAATTGATG+CGG + chr8.4:17919623-17919642 MS.gene063508:CDS 40.0%
TTATGCTGTAGACATGGCTA+TGG - chr8.4:17921636-17921655 None:intergenic 40.0%
TTGCTGTCTGAGTTTGATGA+TGG + chr8.4:17920580-17920599 MS.gene063508:CDS 40.0%
TTGTCAACAATGTAGCAGGT+TGG + chr8.4:17919857-17919876 MS.gene063508:intron 40.0%
TTGTGAATGGAATTGAGCAG+AGG + chr8.4:17919832-17919851 MS.gene063508:CDS 40.0%
! AATTCTGTGGTGGAATCCAA+TGG + chr8.4:17919555-17919574 MS.gene063508:CDS 40.0%
! AGCATCTTTTCTCTATCCAG+AGG + chr8.4:17921219-17921238 MS.gene063508:CDS 40.0%
! ATGTAATTTAATGGGCGCAG+AGG - chr8.4:17920790-17920809 None:intergenic 40.0%
! ATTGATGCGGCATTTTCCAA+AGG + chr8.4:17919636-17919655 MS.gene063508:CDS 40.0%
! GTTTTCTTCGACGCTCATTA+TGG - chr8.4:17920636-17920655 None:intergenic 40.0%
! TAATCCTTGAATGCTTGGTG+CGG - chr8.4:17921503-17921522 None:intergenic 40.0%
! TGTAATTTAATGGGCGCAGA+GGG - chr8.4:17920789-17920808 None:intergenic 40.0%
!! GGTTTTGTCAACAATGTAGC+AGG + chr8.4:17919853-17919872 MS.gene063508:CDS 40.0%
!! TTTTTGGTGTGTGTGCCTAT+TGG + chr8.4:17920167-17920186 MS.gene063508:intron 40.0%
AATGTTGCCACATCCACTAC+AGG + chr8.4:17921391-17921410 MS.gene063508:CDS 45.0%
ACTGAACTTACTGCCTGTAG+TGG - chr8.4:17921407-17921426 None:intergenic 45.0%
AGACTGTTTCAGCCATTTGG+TGG + chr8.4:17920685-17920704 MS.gene063508:CDS 45.0%
AGCCAATGGCATGAGCATAA+TGG - chr8.4:17921441-17921460 None:intergenic 45.0%
AGCCATTATGCTCATGCCAT+TGG + chr8.4:17921436-17921455 MS.gene063508:CDS 45.0%
AGGTCTTCCAAAGTGGTTTC+TGG + chr8.4:17921239-17921258 MS.gene063508:CDS 45.0%
CAAAGGGAATTTCCAAGGAC+TGG - chr8.4:17921588-17921607 None:intergenic 45.0%
CATGTAAAATGCCGCTGACA+CGG + chr8.4:17921017-17921036 MS.gene063508:intron 45.0%
CTGAGATGACTTCCATCTGT+AGG - chr8.4:17921715-17921734 None:intergenic 45.0%
GGATAGAGAAAAGATGCTGC+TGG - chr8.4:17921217-17921236 None:intergenic 45.0%
GGCGTTCACTCTACAAATTC+TGG + chr8.4:17920661-17920680 MS.gene063508:CDS 45.0%
GGCTGCTTGGAATAACCAAA+GGG - chr8.4:17921615-17921634 None:intergenic 45.0%
TAACACTTCAAGCCAGTCCT+TGG + chr8.4:17921573-17921592 MS.gene063508:CDS 45.0%
TAGAGAAAAGATGCTGCTGG+TGG - chr8.4:17921214-17921233 None:intergenic 45.0%
TAGGTCTCCAGAAACCACTT+TGG - chr8.4:17921249-17921268 None:intergenic 45.0%
TATCCAGAGGTCTTCCAAAG+TGG + chr8.4:17921232-17921251 MS.gene063508:CDS 45.0%
TATGGCCTGCAAGTCGTTTA+CGG - chr8.4:17920618-17920637 None:intergenic 45.0%
TGGCTGCTTGGAATAACCAA+AGG - chr8.4:17921616-17921635 None:intergenic 45.0%
TTCCCATTTCTAACGAGGGA+CGG - chr8.4:17921048-17921067 None:intergenic 45.0%
TTCCGTCCCTCGTTAGAAAT+GGG + chr8.4:17921043-17921062 MS.gene063508:intron 45.0%
TTTCCGTCCCTCGTTAGAAA+TGG + chr8.4:17921042-17921061 MS.gene063508:intron 45.0%
TTTGTAGAGTGAACGCCTTG+TGG - chr8.4:17920658-17920677 None:intergenic 45.0%
! AAACCACTTTGGAAGACCTC+TGG - chr8.4:17921238-17921257 None:intergenic 45.0%
! TGAAGATGTCCATTGGTGAC+AGG - chr8.4:17921316-17921335 None:intergenic 45.0%
! TGTGGTGGAATCCAATGGTT+GGG + chr8.4:17919560-17919579 MS.gene063508:CDS 45.0%
!! CAAAATAGGTGCTGCTCCTT+TGG - chr8.4:17919655-17919674 None:intergenic 45.0%
!! CAGAACATGAAGCTGGCTTT+AGG + chr8.4:17921275-17921294 MS.gene063508:CDS 45.0%
!! GGACTGGCTTGAAGTGTTAT+TGG - chr8.4:17921572-17921591 None:intergenic 45.0%
AAAAGATGCTGCTGGTGGCT+TGG - chr8.4:17921209-17921228 None:intergenic 50.0%
AGTTGCCGTAAACGACTTGC+AGG + chr8.4:17920610-17920629 MS.gene063508:CDS 50.0%
CATACCGCACCAAGCATTCA+AGG + chr8.4:17921496-17921515 MS.gene063508:CDS 50.0%
GAAGTCTTCGCTTCCTAAGG+AGG - chr8.4:17921467-17921486 None:intergenic 50.0%
GAGTGCACTCTCACTCTCTT+GGG - chr8.4:17919702-17919721 None:intergenic 50.0%
GGCTTCAAAACCCAAGACCA+AGG - chr8.4:17920384-17920403 None:intergenic 50.0%
GGGAGACTGTTTCAGCCATT+TGG + chr8.4:17920682-17920701 MS.gene063508:CDS 50.0%
TAGACATGGCTATGGCTGCT+TGG - chr8.4:17921628-17921647 None:intergenic 50.0%
TCTTCTGTGCCTGTCACCAA+TGG + chr8.4:17921304-17921323 MS.gene063508:CDS 50.0%
TGAGTGCACTCTCACTCTCT+TGG - chr8.4:17919703-17919722 None:intergenic 50.0%
! CGTGTCAGCGGCATTTTACA+TGG - chr8.4:17921019-17921038 None:intergenic 50.0%
! CTGTGGTGGAATCCAATGGT+TGG + chr8.4:17919559-17919578 MS.gene063508:CDS 50.0%
! TCCTAAGGAGGTGTAGCCAA+TGG - chr8.4:17921455-17921474 None:intergenic 50.0%
! TCTATCAGACACTCGGCTTG+AGG - chr8.4:17921674-17921693 None:intergenic 50.0%
!! CTTACTGCCTGTAGTGGATG+TGG - chr8.4:17921401-17921420 None:intergenic 50.0%
!! GAGCGTCGAAGAAAACCACA+AGG + chr8.4:17920640-17920659 MS.gene063508:CDS 50.0%
GGACGGAAAATCCGTGTCAG+CGG - chr8.4:17921031-17921050 None:intergenic 55.0%
TGCACTCTCACTCTCTTGGG+AGG - chr8.4:17919699-17919718 None:intergenic 55.0%
! GCCATTGGCTACACCTCCTT+AGG + chr8.4:17921451-17921470 MS.gene063508:CDS 55.0%
!! CTGCTGGTGGCTTGGTTCCC+TGG - chr8.4:17921201-17921220 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 17919369 17921960 17919369 ID=MS.gene063508
chr8.4 mRNA 17919369 17921960 17919369 ID=MS.gene063508.t1;Parent=MS.gene063508
chr8.4 exon 17919369 17919874 17919369 ID=MS.gene063508.t1.exon1;Parent=MS.gene063508.t1
chr8.4 CDS 17919369 17919874 17919369 ID=cds.MS.gene063508.t1;Parent=MS.gene063508.t1
chr8.4 exon 17920573 17920706 17920573 ID=MS.gene063508.t1.exon2;Parent=MS.gene063508.t1
chr8.4 CDS 17920573 17920706 17920573 ID=cds.MS.gene063508.t1;Parent=MS.gene063508.t1
chr8.4 exon 17921188 17921960 17921188 ID=MS.gene063508.t1.exon3;Parent=MS.gene063508.t1
chr8.4 CDS 17921188 17921960 17921188 ID=cds.MS.gene063508.t1;Parent=MS.gene063508.t1
Gene Sequence

>MS.gene063508

ATGGAATCTTGGAGTTATATTTCTGAAGAAAAAGGTTCTGAAGAATTAGGCTTTTGTGAAATGTTTGGGAAACAATATTCAGATGATTTCAATTTCATTGGAAGTGTTCCAAGCAAGAAACTTGATGGTAAATTTGATGACCCAAGTGAGTTTTCTGTAAAAGGGGACACAAATTTCAAGCTTTCAAATTCTGTGGTGGAATCCAATGGTTGGGATTCTCTCATTGATTTGAAGCTAGGAAGATTTGATGATCATGGCAATGCTTCAATTGATGCGGCATTTTCCAAAGGAGCAGCACCTATTTTGTCTTCTTGTGAGTCTTCAACACCTCCCAAGAGAGTGAGAGTGCACTCAATGACTGCATATTGTCAAGTTTATGGATGTAACAAGGATCTTAGTTCTTGTAAGGACTACCATAAGAGGCATAAAGTTTGTGAGGTTCACTCCAAGACTCCTATAGTCATTGTGAATGGAATTGAGCAGAGGTTTTGTCAACAATGTAGCAGGTTGGTCCAATTTTCAAGTTTATTACTTCTTTCAATTCATTTTAGTGTAAAATTGATTCTATATTTGGTGGAATTGATTTTGCATTTCTAACTAGCTGGAATTTGGAATTGTTGCCTCTACAATTGATTTTTAGCCTCTAATTTATTGCTCAACCCTTTTTTATATAATTGTATCCAAACATTAACCTCTTTAGTCATAATCCATTTTACTAAATTAATTCATTCAAAATTAATTTTTGTTATTGCAGAACCAAAACCAAACTTAAACAAAATTAGTTTAGCATCACAATAGTTTTTGGTGTGTGTGCCTATTGGAATACTAGAACATGAATCTTTACTTGTTGAATTATGTCATGAGCAGGGTTTTAAATTATGGTTGTGTTGCAATAATTGAAATTAATATTGTAAATAATCACACATGTGGCTTATTTGATTTTAATTATCACTGCGAAATACATCGAAAACTTTAATGTGCCTAAATTGTGATCACATGTTTTTGTTTTAAACCTTGGTCTTGGGTTTTGAAGCCTTGTTTTGTTTTCAACATTCGTTGCTTACCCTTTGCACCTATTGATTACTATGCTTCTTAAATGAAGTTTTTCCTTCAGTCATGTTTCTACTTAGGATGATAAGCCTCAAATAAGAAGCTGTATAGTTATGATATATAGGTCTGGTGTAATGTTTAGCTTGTTATACAGGTTTCATTTGCTGTCTGAGTTTGATGATGGTAAGCGCAGTTGCCGTAAACGACTTGCAGGCCATAATGAGCGTCGAAGAAAACCACAAGGCGTTCACTCTACAAATTCTGGGAGACTGTTTCAGCCATTTGGTGGTAATAATATATATAATAAAGTTAGATCATGATTTAACTTTATTCTTTACACTCCTTTTTCTTTCACATTCATTTGTTGCCCTCTGCGCCCATTAAATTACATTGATTTCTTTTGTTGTGGTTGATGTGAACCATAAGTTACTTATTCAACAATAGTTAATGGTTGAAGCAGAAATTAAGCATCTCCTTATGGTCAATCATAAACTTCCATCTGCTTTCTTACAGAATGACATCTAAATCTAATTAATTGTAGTTACCTAAATTCCGAGTTTCCATTCATATAACTAAGTTACTAACCTTAGTGTTGTACCATGTAAAATGCCGCTGACACGGATTTTCCGTCCCTCGTTAGAAATGGGAAAAAGATGAAGCATTGTGACTCTTATAATAATTGATTATCTGAAGCCAGTTTCCTATGCTTTTTTAGTCATCTGATATTAATATAAATGTATGATTTGATACGATCCTATGGTTCTTGCAGATATCAGATTCCAGGGAACCAAGCCACCAGCAGCATCTTTTCTCTATCCAGAGGTCTTCCAAAGTGGTTTCTGGAGACCTATGAAAGCAGAACATGAAGCTGGCTTTAGGCATTTTTCTTCTGTGCCTGTCACCAATGGACATCTTCAATCAAGATCTCCGTTTCCTTCGTACAACGAAAAACAATTTCCCTTTCTTCATGAAAATGTTGCCACATCCACTACAGGCAGTAAGTTCAGTGAAAACAATAGCCATTATGCTCATGCCATTGGCTACACCTCCTTAGGAAGCGAAGACTTCAATGTTTTTCATACCGCACCAAGCATTCAAGGATTATCAGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAGTCCAATAACACTTCAAGCCAGTCCTTGGAAATTCCCTTTGATAACCCTTTGGTTATTCCAAGCAGCCATAGCCATGTCTACAGCATAAGATCACAAGCGACTTCCTCAAGCCGAGTGTCTGATAGACTTTTATCCGAATTAAATCCTACAGATGGAAGTCATCTCAGTCCTATATTGGTACCAGACAATAATGATATCGTGAACTTTGAAATGGAAGACGGGATCTTCCATGATTCAGATTTTGTGAATGTGAAAGACTGCCTTTCTTGTGAAGATGATGCAACCATCGATTTACTACAACTGTCGTCGCAGCTTCAACGAGTTGAGCATCATAGACAATCATTGCAGGTGAAGAAAGAGTTTGATTCTTCTTGCACTCTCCGAATTACTTAA

Protein sequence

>MS.gene063508.t1

MESWSYISEEKGSEELGFCEMFGKQYSDDFNFIGSVPSKKLDGKFDDPSEFSVKGDTNFKLSNSVVESNGWDSLIDLKLGRFDDHGNASIDAAFSKGAAPILSSCESSTPPKRVRVHSMTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTPIVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQGVHSTNSGRLFQPFGDIRFQGTKPPAASFLYPEVFQSGFWRPMKAEHEAGFRHFSSVPVTNGHLQSRSPFPSYNEKQFPFLHENVATSTTGSKFSENNSHYAHAIGYTSLGSEDFNVFHTAPSIQGLSGISDSCALSLLSSQSNNTSSQSLEIPFDNPLVIPSSHSHVYSIRSQATSSSRVSDRLLSELNPTDGSHLSPILVPDNNDIVNFEMEDGIFHDSDFVNVKDCLSCEDDATIDLLQLSSQLQRVEHHRQSLQVKKEFDSSCTLRIT