Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063618.t1 | XP_003616176.1 | 93.6 | 420 | 16 | 1 | 1 | 409 | 1 | 420 | 6.10E-218 | 766.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063618.t1 | F4KGY6 | 45.0 | 333 | 141 | 9 | 21 | 346 | 33 | 330 | 9.3e-50 | 199.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063618.t1 | G7KFU7 | 93.6 | 420 | 16 | 1 | 1 | 409 | 1 | 420 | 4.4e-218 | 766.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene063618.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063618.t1 | MTR_5g076960 | 93.571 | 420 | 16 | 1 | 1 | 409 | 1 | 420 | 0.0 | 754 |
| MS.gene063618.t1 | MTR_5g076960 | 92.163 | 319 | 14 | 1 | 102 | 409 | 1 | 319 | 0.0 | 540 |
| MS.gene063618.t1 | MTR_3g064500 | 62.590 | 278 | 96 | 3 | 4 | 280 | 19 | 289 | 6.71e-103 | 309 |
| MS.gene063618.t1 | MTR_6g477860 | 36.062 | 452 | 197 | 14 | 24 | 407 | 38 | 465 | 5.14e-54 | 186 |
| MS.gene063618.t1 | MTR_1g067000 | 55.769 | 104 | 38 | 1 | 24 | 127 | 28 | 123 | 1.90e-34 | 130 |
| MS.gene063618.t1 | MTR_8g028655 | 39.070 | 215 | 96 | 6 | 28 | 226 | 49 | 244 | 1.72e-33 | 128 |
| MS.gene063618.t1 | MTR_7g118330 | 67.619 | 105 | 32 | 1 | 23 | 125 | 6 | 110 | 8.67e-33 | 131 |
| MS.gene063618.t1 | MTR_0123s0070 | 58.763 | 97 | 32 | 2 | 28 | 124 | 35 | 123 | 4.87e-31 | 120 |
| MS.gene063618.t1 | MTR_0123s0070 | 58.163 | 98 | 33 | 2 | 28 | 125 | 35 | 124 | 6.98e-31 | 120 |
| MS.gene063618.t1 | MTR_4g061370 | 61.053 | 95 | 33 | 1 | 174 | 264 | 332 | 426 | 4.83e-24 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063618.t1 | AT5G17300 | 52.490 | 261 | 89 | 5 | 21 | 279 | 33 | 260 | 2.45e-55 | 187 |
| MS.gene063618.t1 | AT5G37260 | 58.537 | 164 | 59 | 3 | 23 | 186 | 16 | 170 | 8.57e-45 | 157 |
| MS.gene063618.t1 | AT3G10113 | 43.043 | 230 | 105 | 8 | 28 | 245 | 50 | 265 | 7.88e-38 | 140 |
| MS.gene063618.t1 | AT1G18330 | 40.486 | 247 | 112 | 8 | 28 | 245 | 35 | 275 | 1.69e-37 | 139 |
| MS.gene063618.t1 | AT1G18330 | 40.486 | 247 | 112 | 8 | 28 | 245 | 61 | 301 | 2.77e-37 | 139 |
| MS.gene063618.t1 | AT2G46830 | 61.798 | 89 | 34 | 0 | 20 | 108 | 1 | 89 | 1.64e-32 | 129 |
| MS.gene063618.t1 | AT3G09600 | 56.566 | 99 | 35 | 1 | 32 | 130 | 32 | 122 | 3.35e-32 | 124 |
| MS.gene063618.t1 | AT3G09600 | 56.566 | 99 | 35 | 1 | 32 | 130 | 32 | 122 | 3.35e-32 | 124 |
| MS.gene063618.t1 | AT3G09600 | 56.566 | 99 | 35 | 1 | 32 | 130 | 32 | 122 | 3.70e-32 | 123 |
| MS.gene063618.t1 | AT3G09600 | 56.566 | 99 | 35 | 1 | 32 | 130 | 32 | 122 | 3.70e-32 | 123 |
| MS.gene063618.t1 | AT3G09600 | 56.566 | 99 | 35 | 1 | 32 | 130 | 32 | 122 | 4.15e-32 | 123 |
| MS.gene063618.t1 | AT1G01060 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 1.27e-31 | 127 |
| MS.gene063618.t1 | AT1G01060 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 1.27e-31 | 127 |
| MS.gene063618.t1 | AT1G01060 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 1.27e-31 | 127 |
| MS.gene063618.t1 | AT1G01060 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 1.27e-31 | 127 |
| MS.gene063618.t1 | AT1G01060 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 1.27e-31 | 127 |
| MS.gene063618.t1 | AT1G01060 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 1.28e-31 | 127 |
| MS.gene063618.t1 | AT5G52660 | 56.122 | 98 | 35 | 1 | 28 | 125 | 57 | 146 | 1.01e-30 | 120 |
| MS.gene063618.t1 | AT5G52660 | 56.122 | 98 | 35 | 1 | 28 | 125 | 57 | 146 | 1.04e-30 | 120 |
| MS.gene063618.t1 | AT1G01520 | 42.208 | 154 | 71 | 3 | 28 | 181 | 46 | 181 | 1.30e-30 | 118 |
| MS.gene063618.t1 | AT1G01520 | 42.208 | 154 | 71 | 3 | 28 | 181 | 46 | 181 | 1.30e-30 | 118 |
| MS.gene063618.t1 | AT1G01520 | 42.208 | 154 | 71 | 3 | 28 | 181 | 46 | 181 | 2.06e-30 | 119 |
| MS.gene063618.t1 | AT4G01280 | 57.843 | 102 | 35 | 2 | 24 | 125 | 40 | 133 | 2.12e-30 | 119 |
| MS.gene063618.t1 | AT1G01520 | 42.208 | 154 | 71 | 3 | 28 | 181 | 46 | 181 | 2.19e-30 | 118 |
| MS.gene063618.t1 | AT4G01280 | 57.843 | 102 | 35 | 2 | 24 | 125 | 40 | 133 | 2.21e-30 | 119 |
| MS.gene063618.t1 | AT5G02840 | 49.565 | 115 | 49 | 2 | 32 | 145 | 37 | 143 | 3.68e-30 | 117 |
| MS.gene063618.t1 | AT5G02840 | 56.989 | 93 | 32 | 1 | 32 | 124 | 37 | 121 | 4.45e-30 | 117 |
| MS.gene063618.t1 | AT5G02840 | 56.383 | 94 | 33 | 1 | 32 | 125 | 37 | 122 | 4.58e-30 | 118 |
| MS.gene063618.t1 | AT5G02840 | 56.383 | 94 | 33 | 1 | 32 | 125 | 37 | 122 | 4.58e-30 | 118 |
| MS.gene063618.t1 | AT5G02840 | 49.565 | 115 | 49 | 2 | 32 | 145 | 37 | 143 | 5.37e-30 | 117 |
| MS.gene063618.t1 | AT5G17300 | 41.781 | 292 | 116 | 13 | 68 | 346 | 5 | 255 | 2.13e-23 | 100 |
| MS.gene063618.t1 | AT3G09600 | 50.000 | 64 | 24 | 1 | 61 | 124 | 5 | 60 | 3.26e-15 | 75.1 |
| MS.gene063618.t1 | AT3G09600 | 50.000 | 64 | 24 | 1 | 61 | 124 | 5 | 60 | 3.26e-15 | 75.1 |
| MS.gene063618.t1 | AT3G09600 | 50.000 | 64 | 24 | 1 | 61 | 124 | 5 | 60 | 4.02e-15 | 74.7 |
| MS.gene063618.t1 | AT3G09600 | 50.000 | 64 | 24 | 1 | 61 | 124 | 5 | 60 | 4.02e-15 | 74.7 |
Find 79 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGATTCTATGGAGATTT+TGG | 0.128871 | 5.2:-65697010 | None:intergenic |
| TCATGATATGCAACCTTTAA+TGG | 0.188283 | 5.2:-65695155 | MS.gene063618:intron |
| GATTTAAGAAATACCATTAA+AGG | 0.226502 | 5.2:+65695142 | None:intergenic |
| GTAATTTACATTATCACTTT+TGG | 0.275983 | 5.2:+65694481 | None:intergenic |
| TCGCTCGTGTCATTAGATTT+TGG | 0.279286 | 5.2:-65695388 | MS.gene063618:CDS |
| TTCCTCAGATGATGATGATT+TGG | 0.286247 | 5.2:+65695219 | None:intergenic |
| TGGTTGCGACACATTCTTTA+GGG | 0.316667 | 5.2:+65694834 | None:intergenic |
| GATAATGTAAATTACTTTGT+TGG | 0.337664 | 5.2:-65694473 | MS.gene063618:CDS |
| CTCCTTGTGCAGTGGCTTGA+AGG | 0.345306 | 5.2:+65694643 | None:intergenic |
| GGATGAATCGGCTTCCGTTT+TGG | 0.347869 | 5.2:+65695481 | None:intergenic |
| TTGGTTGCGACACATTCTTT+AGG | 0.358230 | 5.2:+65694833 | None:intergenic |
| ACTGTGAGACTTAAAACATT+TGG | 0.361069 | 5.2:-65694431 | MS.gene063618:CDS |
| CTTGAAGCTTTAAAGTTATA+CGG | 0.366914 | 5.2:-65695947 | MS.gene063618:CDS |
| CGTATAACTTTAAAGCTTCA+AGG | 0.388114 | 5.2:+65695948 | None:intergenic |
| CCTATTGGGAGGGAACTATA+AGG | 0.389437 | 5.2:+65694310 | None:intergenic |
| GTCTTGCAACTGTTGTTCCT+TGG | 0.392635 | 5.2:-65694688 | MS.gene063618:CDS |
| AGACTTAAAACATTTGGAAA+AGG | 0.401391 | 5.2:-65694425 | MS.gene063618:CDS |
| TGATGTTGTAGAAGACTTGC+AGG | 0.410502 | 5.2:+65694739 | None:intergenic |
| GTGGACTATTTCAGACAATT+CGG | 0.423011 | 5.2:-65694666 | MS.gene063618:CDS |
| TAAAGTTATACGGTCGAGCC+TGG | 0.431959 | 5.2:-65695937 | MS.gene063618:CDS |
| TGAGACCGGGGACAAACTTC+CGG | 0.438186 | 5.2:+65695285 | None:intergenic |
| TTGCAACTGTTGTTCCTTGG+TGG | 0.457649 | 5.2:-65694685 | MS.gene063618:CDS |
| TTGCATATCATGAGTTGAAC+CGG | 0.464322 | 5.2:+65695165 | None:intergenic |
| CCCTCGGGCTCCTTGTGCAG+TGG | 0.465390 | 5.2:+65694635 | None:intergenic |
| GTTGCAAGACTAGCAGGAAT+AGG | 0.468495 | 5.2:+65694701 | None:intergenic |
| ACTGCAGATAATACCGACTT+TGG | 0.472597 | 5.2:+65695349 | None:intergenic |
| GACTTAAAACATTTGGAAAA+GGG | 0.481341 | 5.2:-65694424 | MS.gene063618:CDS |
| TCAACTACTTTACGTGGGTA+AGG | 0.488398 | 5.2:+65695460 | None:intergenic |
| GAATGAAGGGAGAACCTTCA+AGG | 0.489688 | 5.2:+65696137 | None:intergenic |
| AAGGAAGGATCTTCTTGTGT+TGG | 0.490240 | 5.2:-65694563 | MS.gene063618:CDS |
| GCAGTTGCTTCAGAAACCCT+TGG | 0.491941 | 5.2:-65695331 | MS.gene063618:CDS |
| CAGATCAATCGAGACTCTGA+TGG | 0.493763 | 5.2:-65695550 | MS.gene063618:CDS |
| TTACGTGGGTAAGGATGAAT+CGG | 0.497072 | 5.2:+65695469 | None:intergenic |
| TGGAAATGACCATGCCTTGA+AGG | 0.504748 | 5.2:-65696151 | MS.gene063618:intron |
| TTCTTCTGCTGCTACTTCGT+TGG | 0.506774 | 5.2:+65694814 | None:intergenic |
| CGGGGACAAACTTCCGGTGG+GGG | 0.511790 | 5.2:+65695291 | None:intergenic |
| ACAACAGTTGCAAGACTAGC+AGG | 0.513968 | 5.2:+65694695 | None:intergenic |
| CGAAGATAAAGAAATTCAAA+AGG | 0.522634 | 5.2:-65694582 | MS.gene063618:CDS |
| AAGGGTTTGTACCATACAAA+AGG | 0.528705 | 5.2:-65694406 | MS.gene063618:CDS |
| GATAAAGAAATTCAAAAGGA+AGG | 0.531765 | 5.2:-65694578 | MS.gene063618:CDS |
| GCGATTTCAACTACTTTACG+TGG | 0.532217 | 5.2:+65695454 | None:intergenic |
| TCTATTAGTGCTGTCCATAC+CGG | 0.535259 | 5.2:-65695262 | MS.gene063618:CDS |
| GCCACTGCACAAGGAGCCCG+AGG | 0.547161 | 5.2:-65694636 | MS.gene063618:CDS |
| CTCGAGAAGTGGAAATCTAC+CGG | 0.547548 | 5.2:+65695243 | None:intergenic |
| CAGCACTAATAGATGAGACC+GGG | 0.548266 | 5.2:+65695272 | None:intergenic |
| CCTCAGTGGCTGTTCCAAGT+TGG | 0.552497 | 5.2:+65695417 | None:intergenic |
| GAAGTGGAAATCTACCGGTA+TGG | 0.556004 | 5.2:+65695248 | None:intergenic |
| AAGACTAGCAGGAATAGGTT+CGG | 0.557239 | 5.2:+65694706 | None:intergenic |
| TCACAAAACAGAGAGAAAAG+TGG | 0.563691 | 5.2:-65695994 | MS.gene063618:CDS |
| GGCCTTCAAGCCACTGCACA+AGG | 0.565013 | 5.2:-65694645 | MS.gene063618:CDS |
| CGACAGTAACAGACGAGAGG+AGG | 0.565037 | 5.2:-65694355 | MS.gene063618:CDS |
| CAAATAGATGAACTGAATGC+CGG | 0.567205 | 5.2:-65695184 | MS.gene063618:CDS |
| CCCCACCGGAAGTTTGTCCC+CGG | 0.581480 | 5.2:-65695290 | MS.gene063618:CDS |
| TTCCACCTCCAAGACCAAAA+CGG | 0.592397 | 5.2:-65695495 | MS.gene063618:CDS |
| AAAGAATGAAATCTCCAACT+TGG | 0.596383 | 5.2:-65695431 | MS.gene063618:CDS |
| ACAGCACTAATAGATGAGAC+CGG | 0.599144 | 5.2:+65695271 | None:intergenic |
| ACCGGGGACAAACTTCCGGT+GGG | 0.602166 | 5.2:+65695289 | None:intergenic |
| GACAGTAACAGACGAGAGGA+GGG | 0.604818 | 5.2:-65694354 | MS.gene063618:CDS |
| CGATTTCAACTACTTTACGT+GGG | 0.606836 | 5.2:+65695455 | None:intergenic |
| AAGGGAGAACCTTCAAGGCA+TGG | 0.608656 | 5.2:+65696142 | None:intergenic |
| CAGTTTCACTTAGTGTAGTG+TGG | 0.611986 | 5.2:+65694450 | None:intergenic |
| AGATCAATCGAGACTCTGAT+GGG | 0.620608 | 5.2:-65695549 | MS.gene063618:CDS |
| GTCCAAATCATCATCATCTG+AGG | 0.625336 | 5.2:-65695221 | MS.gene063618:CDS |
| GACCGGGGACAAACTTCCGG+TGG | 0.627401 | 5.2:+65695288 | None:intergenic |
| AGAAAACAACTCTCCAAAGT+CGG | 0.630200 | 5.2:-65695362 | MS.gene063618:CDS |
| GATGATTTGGACTCGAGAAG+TGG | 0.632490 | 5.2:+65695232 | None:intergenic |
| GGAGGGAACATCAACGCATG+AGG | 0.635432 | 5.2:-65694337 | MS.gene063618:CDS |
| TATCTGAATCAGAGAAACCA+AGG | 0.643676 | 5.2:+65695314 | None:intergenic |
| TGATGGGAACGACACAACAA+TGG | 0.647153 | 5.2:-65695533 | MS.gene063618:CDS |
| TGGGAACGACACAACAATGG+TGG | 0.665179 | 5.2:-65695530 | MS.gene063618:CDS |
| CCGGGGACAAACTTCCGGTG+GGG | 0.673525 | 5.2:+65695290 | None:intergenic |
| CCACTGCACAAGGAGCCCGA+GGG | 0.677376 | 5.2:-65694635 | MS.gene063618:CDS |
| ATCTGAATCAGAGAAACCAA+GGG | 0.684620 | 5.2:+65695315 | None:intergenic |
| CCAACTTGGAACAGCCACTG+AGG | 0.697656 | 5.2:-65695417 | MS.gene063618:CDS |
| GTTCGACAGTAACAGACGAG+AGG | 0.713362 | 5.2:-65694358 | MS.gene063618:CDS |
| TTGTCTGAAATAGTCCACCA+AGG | 0.714861 | 5.2:+65694671 | None:intergenic |
| AGCACTAATAGATGAGACCG+GGG | 0.725242 | 5.2:+65695273 | None:intergenic |
| AAAAGTTTGAGAGTTCGACA+AGG | 0.741043 | 5.2:+65694788 | None:intergenic |
| ACGAGCGAATTAGACCTCAG+TGG | 0.785740 | 5.2:+65695403 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAAAATCATGT+AGG | - | chr5.2:65694824-65694843 | MS.gene063618:CDS | 10.0% |
| !! | AAATAAATAAAAATCATGTA+GGG | - | chr5.2:65694825-65694844 | MS.gene063618:CDS | 10.0% |
| !! | AATTAATAAATCAGAAAATA+TGG | - | chr5.2:65695498-65695517 | MS.gene063618:CDS | 10.0% |
| !! | TAAAAAAAAAAAATCCTTTA+TGG | - | chr5.2:65694981-65695000 | MS.gene063618:intron | 10.0% |
| !!! | AAATTTATGTATACTTTTAT+AGG | - | chr5.2:65695290-65695309 | MS.gene063618:CDS | 10.0% |
| !!! | ATAAATTTTCACTTAATATA+TGG | + | chr5.2:65695652-65695671 | None:intergenic | 10.0% |
| !!! | ATTATTTTGTATTTTATTCT+TGG | - | chr5.2:65694409-65694428 | MS.gene063618:CDS | 10.0% |
| !!! | TTATTTTGTATTTTATTCTT+GGG | - | chr5.2:65694410-65694429 | MS.gene063618:CDS | 10.0% |
| !! | AATAAATAAAAATCATGTAG+GGG | - | chr5.2:65694826-65694845 | MS.gene063618:CDS | 15.0% |
| !! | TTATTAAATCTATGCATATT+TGG | + | chr5.2:65694626-65694645 | None:intergenic | 15.0% |
| !!! | ATTTTATATGCTTTGATTTT+TGG | - | chr5.2:65695233-65695252 | MS.gene063618:CDS | 15.0% |
| !!! | TAATTAAAAAGAGAGTATTT+TGG | - | chr5.2:65694958-65694977 | MS.gene063618:intron | 15.0% |
| !!! | TATTTTGTATTTTATTCTTG+GGG | - | chr5.2:65694411-65694430 | MS.gene063618:CDS | 15.0% |
| !! | AAGTGAAAATTTATGATCAA+TGG | - | chr5.2:65695658-65695677 | MS.gene063618:intron | 20.0% |
| !! | GATAATGTAAATTACTTTGT+TGG | - | chr5.2:65696852-65696871 | MS.gene063618:intron | 20.0% |
| !! | GATTTAAGAAATACCATTAA+AGG | + | chr5.2:65696186-65696205 | None:intergenic | 20.0% |
| !! | TTAACAAAATGAAATAGGTT+AGG | + | chr5.2:65696208-65696227 | None:intergenic | 20.0% |
| !! | TTCACTTAATATATGGTTTA+TGG | + | chr5.2:65695645-65695664 | None:intergenic | 20.0% |
| !!! | GAAAAAAAGTTATTTTTGAG+TGG | - | chr5.2:65694677-65694696 | MS.gene063618:CDS | 20.0% |
| !!! | GTAATTTACATTATCACTTT+TGG | + | chr5.2:65696847-65696866 | None:intergenic | 20.0% |
| !!! | TAAATATATTGGTTGTGATT+TGG | - | chr5.2:65694583-65694602 | MS.gene063618:CDS | 20.0% |
| !!! | TATTTTGTTTGTGTATGTTA+AGG | - | chr5.2:65694480-65694499 | MS.gene063618:CDS | 20.0% |
| ! | AGACTTAAAACATTTGGAAA+AGG | - | chr5.2:65696900-65696919 | MS.gene063618:intron | 25.0% |
| ! | AGATCAAACATAAGAACAAA+AGG | + | chr5.2:65696444-65696463 | None:intergenic | 25.0% |
| ! | ATGGAATGGTTCAATTATTA+AGG | - | chr5.2:65694924-65694943 | MS.gene063618:intron | 25.0% |
| ! | CACAAATAGATAAGAATGAA+GGG | + | chr5.2:65695204-65695223 | None:intergenic | 25.0% |
| ! | CGAAGATAAAGAAATTCAAA+AGG | - | chr5.2:65696743-65696762 | MS.gene063618:intron | 25.0% |
| ! | GACTAAAATCATAACCATAA+AGG | + | chr5.2:65694998-65695017 | None:intergenic | 25.0% |
| ! | GACTTAAAACATTTGGAAAA+GGG | - | chr5.2:65696901-65696920 | MS.gene063618:intron | 25.0% |
| ! | GATAAAGAAATTCAAAAGGA+AGG | - | chr5.2:65696747-65696766 | MS.gene063618:intron | 25.0% |
| ! | TCACAAATAGATAAGAATGA+AGG | + | chr5.2:65695205-65695224 | None:intergenic | 25.0% |
| ! | TGCAGTTAACAAAATGAAAT+AGG | + | chr5.2:65696213-65696232 | None:intergenic | 25.0% |
| ! | TGGAATGGTTCAATTATTAA+GGG | - | chr5.2:65694925-65694944 | MS.gene063618:intron | 25.0% |
| !! | GAAAATATGGTCTAAGTTTT+TGG | - | chr5.2:65695511-65695530 | MS.gene063618:CDS | 25.0% |
| !! | TATGTATACTTTTATAGGCA+AGG | - | chr5.2:65695295-65695314 | MS.gene063618:CDS | 25.0% |
| !! | TCAGTCATGATGATATTTTT+AGG | - | chr5.2:65696416-65696435 | MS.gene063618:intron | 25.0% |
| !!! | AGTTTTGAATTTTCAGATCT+TGG | - | chr5.2:65695432-65695451 | MS.gene063618:CDS | 25.0% |
| !!! | CTTGAAGCTTTAAAGTTATA+CGG | - | chr5.2:65695378-65695397 | MS.gene063618:CDS | 25.0% |
| !!! | TGCTATTTGATCAATTTTCA+GGG | - | chr5.2:65695091-65695110 | MS.gene063618:intron | 25.0% |
| !!! | TTGCTATTTGATCAATTTTC+AGG | - | chr5.2:65695090-65695109 | MS.gene063618:intron | 25.0% |
| !!! | TTTTGAGTGGTTATTGTTAA+TGG | - | chr5.2:65694690-65694709 | MS.gene063618:CDS | 25.0% |
| AAAGAATGAAATCTCCAACT+TGG | - | chr5.2:65695894-65695913 | MS.gene063618:intron | 30.0% | |
| AAAGATTCTTCTTGCAAAAG+AGG | - | chr5.2:65695468-65695487 | MS.gene063618:CDS | 30.0% | |
| ACTCAACAAAGTTAGTTACA+AGG | + | chr5.2:65694768-65694787 | None:intergenic | 30.0% | |
| ACTGTGAGACTTAAAACATT+TGG | - | chr5.2:65696894-65696913 | MS.gene063618:intron | 30.0% | |
| AGAATATACCTAGCTAAACA+AGG | - | chr5.2:65694736-65694755 | MS.gene063618:CDS | 30.0% | |
| CAAAGTTAGTTACAAGGTTA+AGG | + | chr5.2:65694762-65694781 | None:intergenic | 30.0% | |
| TCATGATATGCAACCTTTAA+TGG | - | chr5.2:65696170-65696189 | MS.gene063618:CDS | 30.0% | |
| TCTTACTATTGTCTAGAAAC+TGG | - | chr5.2:65696461-65696480 | MS.gene063618:intron | 30.0% | |
| ! | ATGAGATTGAGGTTGTTATT+TGG | - | chr5.2:65694453-65694472 | MS.gene063618:CDS | 30.0% |
| ! | ATTTGGTTTATGTCTTCTTG+TGG | - | chr5.2:65694894-65694913 | MS.gene063618:intron | 30.0% |
| ! | CTACTTGATCAATTTTCATG+TGG | - | chr5.2:65695154-65695173 | MS.gene063618:intron | 30.0% |
| ! | CTCTGTTTTGTGATAGTATA+TGG | + | chr5.2:65695324-65695343 | None:intergenic | 30.0% |
| ! | GAGTCATCAAAGTCTAATTT+TGG | - | chr5.2:65694784-65694803 | MS.gene063618:CDS | 30.0% |
| !! | AATTTTCAGGGTCAAAAAGA+AGG | - | chr5.2:65695103-65695122 | MS.gene063618:intron | 30.0% |
| !! | CGTATAACTTTAAAGCTTCA+AGG | + | chr5.2:65695380-65695399 | None:intergenic | 30.0% |
| !! | GTTTTTGATCTGATTTGTGT+TGG | - | chr5.2:65694505-65694524 | MS.gene063618:CDS | 30.0% |
| !!! | ATTTTCAAGTTTCAACCTCA+AGG | + | chr5.2:65695710-65695729 | None:intergenic | 30.0% |
| !!! | TGCTCAGAAGTTTTTTTCTA+AGG | - | chr5.2:65695594-65695613 | MS.gene063618:intron | 30.0% |
| AAAACTATGATGTTCAGTCC+AGG | + | chr5.2:65696276-65696295 | None:intergenic | 35.0% | |
| AAAAGTTTGAGAGTTCGACA+AGG | + | chr5.2:65696540-65696559 | None:intergenic | 35.0% | |
| AAGGGTTTGTACCATACAAA+AGG | - | chr5.2:65696919-65696938 | MS.gene063618:intron | 35.0% | |
| AATTTATGATCAATGGCCCT+TGG | - | chr5.2:65695665-65695684 | MS.gene063618:intron | 35.0% | |
| AGAAAACAACTCTCCAAAGT+CGG | - | chr5.2:65695963-65695982 | MS.gene063618:CDS | 35.0% | |
| ATCTGAATCAGAGAAACCAA+GGG | + | chr5.2:65696013-65696032 | None:intergenic | 35.0% | |
| ATGTTCTGTGGTGAAAATGA+AGG | + | chr5.2:65695539-65695558 | None:intergenic | 35.0% | |
| CAAATAGATGAACTGAATGC+CGG | - | chr5.2:65696141-65696160 | MS.gene063618:intron | 35.0% | |
| CATGACTGATGCAATAATCA+AGG | + | chr5.2:65696405-65696424 | None:intergenic | 35.0% | |
| CGATTTCAACTACTTTACGT+GGG | + | chr5.2:65695873-65695892 | None:intergenic | 35.0% | |
| GGGTAATTTGAATGAATGGA+TGG | - | chr5.2:65694846-65694865 | MS.gene063618:CDS | 35.0% | |
| GTAGGGGTAATTTGAATGAA+TGG | - | chr5.2:65694842-65694861 | MS.gene063618:CDS | 35.0% | |
| TATCTGAATCAGAGAAACCA+AGG | + | chr5.2:65696014-65696033 | None:intergenic | 35.0% | |
| TCACAAAACAGAGAGAAAAG+TGG | - | chr5.2:65695331-65695350 | MS.gene063618:CDS | 35.0% | |
| TCTGCGATTGCAACATAATA+AGG | - | chr5.2:65696379-65696398 | MS.gene063618:intron | 35.0% | |
| TTTGCATTTAGCATCTCCAA+GGG | + | chr5.2:65695684-65695703 | None:intergenic | 35.0% | |
| ! | ATTTTCACCACAGAACATGT+TGG | - | chr5.2:65695541-65695560 | MS.gene063618:CDS | 35.0% |
| ! | GTGGACTATTTCAGACAATT+CGG | - | chr5.2:65696659-65696678 | MS.gene063618:intron | 35.0% |
| ! | TGAATGTAGATGTTTTCCCT+CGG | + | chr5.2:65696709-65696728 | None:intergenic | 35.0% |
| ! | TGTCGAACTCTCAAACTTTT+TGG | - | chr5.2:65696540-65696559 | MS.gene063618:intron | 35.0% |
| ! | TTCCTCAGATGATGATGATT+TGG | + | chr5.2:65696109-65696128 | None:intergenic | 35.0% |
| ! | TTGCATATCATGAGTTGAAC+CGG | + | chr5.2:65696163-65696182 | None:intergenic | 35.0% |
| AAGACTAGCAGGAATAGGTT+CGG | + | chr5.2:65696622-65696641 | None:intergenic | 40.0% | |
| AAGGAAGGATCTTCTTGTGT+TGG | - | chr5.2:65696762-65696781 | MS.gene063618:intron | 40.0% | |
| ACAGCACTAATAGATGAGAC+CGG | + | chr5.2:65696057-65696076 | None:intergenic | 40.0% | |
| AGATCAATCGAGACTCTGAT+GGG | - | chr5.2:65695776-65695795 | MS.gene063618:intron | 40.0% | |
| CAGTTTCACTTAGTGTAGTG+TGG | + | chr5.2:65696878-65696897 | None:intergenic | 40.0% | |
| GCGATTTCAACTACTTTACG+TGG | + | chr5.2:65695874-65695893 | None:intergenic | 40.0% | |
| GCTAAATGCAAACTTCCTTG+AGG | - | chr5.2:65695692-65695711 | MS.gene063618:intron | 40.0% | |
| GTCCAAATCATCATCATCTG+AGG | - | chr5.2:65696104-65696123 | MS.gene063618:intron | 40.0% | |
| GTTAACTGCAAGTTGCAACA+AGG | - | chr5.2:65696223-65696242 | MS.gene063618:intron | 40.0% | |
| GTTTGCATTTAGCATCTCCA+AGG | + | chr5.2:65695685-65695704 | None:intergenic | 40.0% | |
| TCAACTACTTTACGTGGGTA+AGG | + | chr5.2:65695868-65695887 | None:intergenic | 40.0% | |
| TCTATTAGTGCTGTCCATAC+CGG | - | chr5.2:65696063-65696082 | MS.gene063618:intron | 40.0% | |
| TGATGTTGTAGAAGACTTGC+AGG | + | chr5.2:65696589-65696608 | None:intergenic | 40.0% | |
| TGGTTGCGACACATTCTTTA+GGG | + | chr5.2:65696494-65696513 | None:intergenic | 40.0% | |
| TTACGTGGGTAAGGATGAAT+CGG | + | chr5.2:65695859-65695878 | None:intergenic | 40.0% | |
| TTATGTCTTCTTGTGGTGTG+TGG | - | chr5.2:65694901-65694920 | MS.gene063618:intron | 40.0% | |
| TTGGTTGCGACACATTCTTT+AGG | + | chr5.2:65696495-65696514 | None:intergenic | 40.0% | |
| TTGTGAGGAACATGAGATTG+AGG | - | chr5.2:65694442-65694461 | MS.gene063618:CDS | 40.0% | |
| ! | AATACCTTCGATTTTTCGCC+AGG | + | chr5.2:65695409-65695428 | None:intergenic | 40.0% |
| ! | GAATGTAGATGTTTTCCCTC+GGG | + | chr5.2:65696708-65696727 | None:intergenic | 40.0% |
| ! | TCTGACATGCACCTTTTGTA+TGG | + | chr5.2:65696933-65696952 | None:intergenic | 40.0% |
| ! | TTGTCTGAAATAGTCCACCA+AGG | + | chr5.2:65696657-65696676 | None:intergenic | 40.0% |
| !! | ACTGCAGATAATACCGACTT+TGG | + | chr5.2:65695979-65695998 | None:intergenic | 40.0% |
| !! | TCGCTCGTGTCATTAGATTT+TGG | - | chr5.2:65695937-65695956 | MS.gene063618:CDS | 40.0% |
| ACAACAGTTGCAAGACTAGC+AGG | + | chr5.2:65696633-65696652 | None:intergenic | 45.0% | |
| AGCACTAATAGATGAGACCG+GGG | + | chr5.2:65696055-65696074 | None:intergenic | 45.0% | |
| CAGATCAATCGAGACTCTGA+TGG | - | chr5.2:65695775-65695794 | MS.gene063618:intron | 45.0% | |
| CAGCACTAATAGATGAGACC+GGG | + | chr5.2:65696056-65696075 | None:intergenic | 45.0% | |
| CATCACAACGCGATCATGAT+TGG | - | chr5.2:65696307-65696326 | MS.gene063618:intron | 45.0% | |
| CTCGAGAAGTGGAAATCTAC+CGG | + | chr5.2:65696085-65696104 | None:intergenic | 45.0% | |
| CTTTGTGCCAACATGTTCTG+TGG | + | chr5.2:65695551-65695570 | None:intergenic | 45.0% | |
| GAAGTGGAAATCTACCGGTA+TGG | + | chr5.2:65696080-65696099 | None:intergenic | 45.0% | |
| GAATGAAGGGAGAACCTTCA+AGG | + | chr5.2:65695191-65695210 | None:intergenic | 45.0% | |
| GTCTTGCAACTGTTGTTCCT+TGG | - | chr5.2:65696637-65696656 | MS.gene063618:intron | 45.0% | |
| GTTGCAAGACTAGCAGGAAT+AGG | + | chr5.2:65696627-65696646 | None:intergenic | 45.0% | |
| TAAAGTTATACGGTCGAGCC+TGG | - | chr5.2:65695388-65695407 | MS.gene063618:CDS | 45.0% | |
| TGATGGGAACGACACAACAA+TGG | - | chr5.2:65695792-65695811 | MS.gene063618:intron | 45.0% | |
| TGGAAATGACCATGCCTTGA+AGG | - | chr5.2:65695174-65695193 | MS.gene063618:CDS | 45.0% | |
| TTCCACCTCCAAGACCAAAA+CGG | - | chr5.2:65695830-65695849 | MS.gene063618:intron | 45.0% | |
| TTGCAACTGTTGTTCCTTGG+TGG | - | chr5.2:65696640-65696659 | MS.gene063618:intron | 45.0% | |
| ! | GATGATTTGGACTCGAGAAG+TGG | + | chr5.2:65696096-65696115 | None:intergenic | 45.0% |
| ! | TTCTTCTGCTGCTACTTCGT+TGG | + | chr5.2:65696514-65696533 | None:intergenic | 45.0% |
| !! | GGTTAAGGCCTTGTTTAGCT+AGG | + | chr5.2:65694747-65694766 | None:intergenic | 45.0% |
| !! | ATATAAAACTATAAATATAT+TGG | - | chr5.2:65694572-65694591 | MS.gene063618:CDS | 5.0% |
| !!! | TTTTTTTTTTTTATGATATT+TGG | - | chr5.2:65694877-65694896 | MS.gene063618:intron | 5.0% |
| AAGGGAGAACCTTCAAGGCA+TGG | + | chr5.2:65695186-65695205 | None:intergenic | 50.0% | |
| ACGAGCGAATTAGACCTCAG+TGG | + | chr5.2:65695925-65695944 | None:intergenic | 50.0% | |
| CTTGGGGTTGTGTCTTTGTG+AGG | - | chr5.2:65694427-65694446 | MS.gene063618:CDS | 50.0% | |
| CTTGTGGTGTGTGGATGGAA+TGG | - | chr5.2:65694910-65694929 | MS.gene063618:intron | 50.0% | |
| GACAGTAACAGACGAGAGGA+GGG | - | chr5.2:65696971-65696990 | MS.gene063618:intron | 50.0% | |
| GCAGTTGCTTCAGAAACCCT+TGG | - | chr5.2:65695994-65696013 | MS.gene063618:CDS | 50.0% | |
| GTCTTCTTGTGGTGTGTGGA+TGG | - | chr5.2:65694905-65694924 | MS.gene063618:intron | 50.0% | |
| GTTCGACAGTAACAGACGAG+AGG | - | chr5.2:65696967-65696986 | MS.gene063618:intron | 50.0% | |
| TCTGATTCAGATACCCCCAC+CGG | - | chr5.2:65696021-65696040 | MS.gene063618:intron | 50.0% | |
| TGGGAACGACACAACAATGG+TGG | - | chr5.2:65695795-65695814 | MS.gene063618:intron | 50.0% | |
| !! | ATCGGCTTCCGTTTTGGTCT+TGG | + | chr5.2:65695841-65695860 | None:intergenic | 50.0% |
| !! | GGATGAATCGGCTTCCGTTT+TGG | + | chr5.2:65695847-65695866 | None:intergenic | 50.0% |
| !!! | TTCCGTTTTGGTCTTGGAGG+TGG | + | chr5.2:65695835-65695854 | None:intergenic | 50.0% |
| CCAACTTGGAACAGCCACTG+AGG | - | chr5.2:65695908-65695927 | MS.gene063618:intron | 55.0% | |
| CCTCAGTGGCTGTTCCAAGT+TGG | + | chr5.2:65695911-65695930 | None:intergenic | 55.0% | |
| CGACAGTAACAGACGAGAGG+AGG | - | chr5.2:65696970-65696989 | MS.gene063618:intron | 55.0% | |
| CGAGCCTGGCGAAAAATCGA+AGG | - | chr5.2:65695402-65695421 | MS.gene063618:CDS | 55.0% | |
| CTCCTTGTGCAGTGGCTTGA+AGG | + | chr5.2:65696685-65696704 | None:intergenic | 55.0% | |
| GGAGGGAACATCAACGCATG+AGG | - | chr5.2:65696988-65697007 | MS.gene063618:intron | 55.0% | |
| TCAGTCCAGGATTGCAGTCG+CGG | + | chr5.2:65696263-65696282 | None:intergenic | 55.0% | |
| TGAGACCGGGGACAAACTTC+CGG | + | chr5.2:65696043-65696062 | None:intergenic | 55.0% | |
| !!! | GGCTTCCGTTTTGGTCTTGG+AGG | + | chr5.2:65695838-65695857 | None:intergenic | 55.0% |
| ACCGGGGACAAACTTCCGGT+GGG | + | chr5.2:65696039-65696058 | None:intergenic | 60.0% | |
| ACTGTCCGCGACTGCAATCC+TGG | - | chr5.2:65696255-65696274 | MS.gene063618:intron | 60.0% | |
| GGCCTTCAAGCCACTGCACA+AGG | - | chr5.2:65696680-65696699 | MS.gene063618:intron | 60.0% | |
| CCACTGCACAAGGAGCCCGA+GGG | - | chr5.2:65696690-65696709 | MS.gene063618:intron | 65.0% | |
| CCCCACCGGAAGTTTGTCCC+CGG | - | chr5.2:65696035-65696054 | MS.gene063618:intron | 65.0% | |
| CCGGGGACAAACTTCCGGTG+GGG | + | chr5.2:65696038-65696057 | None:intergenic | 65.0% | |
| CGGGGACAAACTTCCGGTGG+GGG | + | chr5.2:65696037-65696056 | None:intergenic | 65.0% | |
| GACCGGGGACAAACTTCCGG+TGG | + | chr5.2:65696040-65696059 | None:intergenic | 65.0% | |
| CCCTCGGGCTCCTTGTGCAG+TGG | + | chr5.2:65696693-65696712 | None:intergenic | 70.0% | |
| GCCACTGCACAAGGAGCCCG+AGG | - | chr5.2:65696689-65696708 | MS.gene063618:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 65694325 | 65697022 | 65694325 | ID=MS.gene063618 |
| chr5.2 | mRNA | 65694325 | 65697022 | 65694325 | ID=MS.gene063618.t1;Parent=MS.gene063618 |
| chr5.2 | exon | 65697011 | 65697022 | 65697011 | ID=MS.gene063618.t1.exon1;Parent=MS.gene063618.t1 |
| chr5.2 | CDS | 65697011 | 65697022 | 65697011 | ID=cds.MS.gene063618.t1;Parent=MS.gene063618.t1 |
| chr5.2 | exon | 65696152 | 65696235 | 65696152 | ID=MS.gene063618.t1.exon2;Parent=MS.gene063618.t1 |
| chr5.2 | CDS | 65696152 | 65696235 | 65696152 | ID=cds.MS.gene063618.t1;Parent=MS.gene063618.t1 |
| chr5.2 | exon | 65695924 | 65696035 | 65695924 | ID=MS.gene063618.t1.exon3;Parent=MS.gene063618.t1 |
| chr5.2 | CDS | 65695924 | 65696035 | 65695924 | ID=cds.MS.gene063618.t1;Parent=MS.gene063618.t1 |
| chr5.2 | exon | 65695732 | 65695793 | 65695732 | ID=MS.gene063618.t1.exon4;Parent=MS.gene063618.t1 |
| chr5.2 | CDS | 65695732 | 65695793 | 65695732 | ID=cds.MS.gene063618.t1;Parent=MS.gene063618.t1 |
| chr5.2 | exon | 65695156 | 65695569 | 65695156 | ID=MS.gene063618.t1.exon5;Parent=MS.gene063618.t1 |
| chr5.2 | CDS | 65695156 | 65695569 | 65695156 | ID=cds.MS.gene063618.t1;Parent=MS.gene063618.t1 |
| chr5.2 | exon | 65694325 | 65694870 | 65694325 | ID=MS.gene063618.t1.exon6;Parent=MS.gene063618.t1 |
| chr5.2 | CDS | 65694325 | 65694870 | 65694325 | ID=cds.MS.gene063618.t1;Parent=MS.gene063618.t1 |
| Gene Sequence |
| Protein sequence |
