Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063727.t1 | RHN45574.1 | 86.1 | 266 | 32 | 2 | 44 | 305 | 275 | 539 | 2.20E-127 | 465.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063727.t1 | Q8VZ17 | 43.1 | 281 | 111 | 5 | 60 | 305 | 524 | 790 | 2.2e-56 | 220.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063727.t1 | A0A396H1J2 | 86.1 | 266 | 32 | 2 | 44 | 305 | 275 | 539 | 1.6e-127 | 465.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene063727.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063727.t1 | MTR_7g445710 | 84.644 | 267 | 35 | 3 | 44 | 305 | 278 | 543 | 3.80e-158 | 452 |
MS.gene063727.t1 | MTR_7g445710 | 72.308 | 65 | 17 | 1 | 6 | 70 | 83 | 146 | 5.05e-21 | 93.6 |
MS.gene063727.t1 | MTR_7g445530 | 83.122 | 237 | 34 | 3 | 44 | 275 | 278 | 513 | 3.44e-135 | 393 |
MS.gene063727.t1 | MTR_7g445530 | 72.308 | 65 | 17 | 1 | 6 | 70 | 83 | 146 | 5.11e-21 | 93.2 |
MS.gene063727.t1 | MTR_7g450730 | 71.429 | 266 | 46 | 2 | 44 | 305 | 266 | 505 | 1.57e-125 | 368 |
MS.gene063727.t1 | MTR_7g450730 | 81.538 | 65 | 11 | 1 | 6 | 70 | 80 | 143 | 6.01e-26 | 107 |
MS.gene063727.t1 | MTR_5g013420 | 46.350 | 274 | 99 | 5 | 65 | 305 | 831 | 1089 | 6.63e-69 | 232 |
MS.gene063727.t1 | MTR_4g010830 | 44.891 | 274 | 103 | 5 | 65 | 305 | 722 | 980 | 5.98e-68 | 228 |
MS.gene063727.t1 | MTR_5g013420 | 45.985 | 274 | 100 | 5 | 65 | 305 | 831 | 1089 | 1.19e-67 | 228 |
MS.gene063727.t1 | MTR_7g445600 | 61.176 | 170 | 14 | 1 | 106 | 275 | 239 | 356 | 1.16e-60 | 197 |
MS.gene063727.t1 | MTR_7g445600 | 78.947 | 57 | 12 | 0 | 6 | 62 | 79 | 135 | 1.56e-22 | 96.3 |
MS.gene063727.t1 | MTR_4g010550 | 42.182 | 275 | 93 | 7 | 65 | 305 | 222 | 464 | 3.26e-55 | 186 |
MS.gene063727.t1 | MTR_7g084090 | 39.303 | 201 | 109 | 3 | 107 | 305 | 568 | 757 | 1.16e-41 | 153 |
MS.gene063727.t1 | MTR_6g061270 | 39.801 | 201 | 108 | 3 | 107 | 305 | 505 | 694 | 1.57e-40 | 150 |
MS.gene063727.t1 | MTR_1g048950 | 28.691 | 359 | 150 | 10 | 4 | 305 | 224 | 533 | 1.36e-37 | 140 |
MS.gene063727.t1 | MTR_7g052480 | 37.619 | 210 | 115 | 6 | 98 | 305 | 361 | 556 | 3.35e-37 | 139 |
MS.gene063727.t1 | MTR_3g011440 | 36.869 | 198 | 103 | 5 | 109 | 300 | 478 | 659 | 6.27e-34 | 131 |
MS.gene063727.t1 | MTR_8g078490 | 38.693 | 199 | 85 | 6 | 109 | 305 | 1090 | 1253 | 1.16e-32 | 128 |
MS.gene063727.t1 | MTR_6g061200 | 35.644 | 202 | 86 | 4 | 107 | 305 | 505 | 665 | 9.08e-32 | 125 |
MS.gene063727.t1 | MTR_4g132610 | 36.318 | 201 | 87 | 5 | 109 | 305 | 884 | 1047 | 1.15e-30 | 122 |
MS.gene063727.t1 | MTR_8g042750 | 35.176 | 199 | 104 | 6 | 109 | 300 | 503 | 683 | 1.77e-30 | 121 |
MS.gene063727.t1 | MTR_5g018850 | 35.354 | 198 | 93 | 5 | 109 | 305 | 1344 | 1507 | 7.69e-30 | 119 |
MS.gene063727.t1 | MTR_8g070070 | 27.984 | 243 | 121 | 6 | 68 | 274 | 531 | 755 | 3.22e-28 | 114 |
MS.gene063727.t1 | MTR_8g071030 | 28.512 | 242 | 121 | 5 | 68 | 274 | 511 | 735 | 1.11e-27 | 113 |
MS.gene063727.t1 | MTR_8g078505 | 34.906 | 212 | 95 | 7 | 94 | 300 | 360 | 533 | 1.64e-27 | 112 |
MS.gene063727.t1 | MTR_7g088370 | 35.897 | 195 | 92 | 7 | 109 | 300 | 536 | 700 | 3.63e-27 | 111 |
MS.gene063727.t1 | MTR_7g445810 | 76.812 | 69 | 15 | 1 | 2 | 70 | 92 | 159 | 6.08e-27 | 107 |
MS.gene063727.t1 | MTR_1g035420 | 27.126 | 247 | 130 | 7 | 69 | 281 | 421 | 651 | 3.35e-26 | 108 |
MS.gene063727.t1 | MTR_8g070075 | 28.033 | 239 | 124 | 6 | 69 | 274 | 525 | 748 | 4.14e-26 | 108 |
MS.gene063727.t1 | MTR_6g044690 | 31.548 | 168 | 97 | 4 | 109 | 274 | 411 | 562 | 7.00e-24 | 102 |
MS.gene063727.t1 | MTR_6g043960 | 32.143 | 168 | 96 | 5 | 109 | 274 | 329 | 480 | 1.59e-23 | 100 |
MS.gene063727.t1 | MTR_2g054460 | 30.357 | 168 | 99 | 3 | 109 | 274 | 311 | 462 | 3.31e-23 | 99.4 |
MS.gene063727.t1 | MTR_0376s0030 | 25.651 | 269 | 143 | 7 | 46 | 274 | 309 | 560 | 9.65e-23 | 98.6 |
MS.gene063727.t1 | MTR_1g035400 | 25.806 | 248 | 136 | 5 | 68 | 282 | 339 | 571 | 1.37e-19 | 89.4 |
MS.gene063727.t1 | MTR_1g080340 | 31.905 | 210 | 109 | 8 | 96 | 303 | 407 | 584 | 9.12e-19 | 87.0 |
MS.gene063727.t1 | MTR_6g027690 | 25.116 | 215 | 122 | 9 | 87 | 300 | 239 | 415 | 2.20e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063727.t1 | AT2G22740 | 43.060 | 281 | 111 | 5 | 60 | 305 | 524 | 790 | 8.22e-68 | 226 |
MS.gene063727.t1 | AT2G22740 | 43.060 | 281 | 111 | 5 | 60 | 305 | 524 | 790 | 8.22e-68 | 226 |
MS.gene063727.t1 | AT2G35160 | 42.857 | 273 | 83 | 5 | 65 | 305 | 527 | 758 | 6.15e-64 | 215 |
MS.gene063727.t1 | AT2G35160 | 42.857 | 273 | 83 | 5 | 65 | 305 | 563 | 794 | 8.64e-64 | 215 |
MS.gene063727.t1 | AT2G35160 | 42.857 | 273 | 83 | 5 | 65 | 305 | 563 | 794 | 8.64e-64 | 215 |
MS.gene063727.t1 | AT2G35160 | 42.857 | 273 | 83 | 5 | 65 | 305 | 563 | 794 | 8.64e-64 | 215 |
MS.gene063727.t1 | AT2G35160 | 42.857 | 273 | 83 | 5 | 65 | 305 | 563 | 794 | 8.64e-64 | 215 |
MS.gene063727.t1 | AT5G13960 | 33.700 | 273 | 135 | 6 | 69 | 305 | 228 | 490 | 1.89e-40 | 147 |
MS.gene063727.t1 | AT5G13960 | 34.066 | 273 | 134 | 6 | 69 | 305 | 362 | 624 | 5.22e-40 | 148 |
MS.gene063727.t1 | AT1G73100 | 33.333 | 195 | 111 | 5 | 109 | 300 | 486 | 664 | 9.71e-28 | 113 |
MS.gene063727.t1 | AT5G04940 | 35.000 | 200 | 101 | 7 | 109 | 300 | 487 | 665 | 1.22e-27 | 113 |
MS.gene063727.t1 | AT5G04940 | 35.000 | 200 | 101 | 7 | 109 | 300 | 487 | 665 | 1.22e-27 | 113 |
MS.gene063727.t1 | AT2G23740 | 30.882 | 204 | 87 | 4 | 109 | 300 | 1209 | 1370 | 2.57e-23 | 100 |
MS.gene063727.t1 | AT2G23740 | 30.882 | 204 | 87 | 4 | 109 | 300 | 1216 | 1377 | 2.73e-23 | 100 |
MS.gene063727.t1 | AT2G23740 | 30.882 | 204 | 87 | 4 | 109 | 300 | 1216 | 1377 | 2.73e-23 | 100 |
MS.gene063727.t1 | AT2G23740 | 30.882 | 204 | 87 | 4 | 109 | 300 | 1216 | 1377 | 2.73e-23 | 100 |
MS.gene063727.t1 | AT4G13460 | 32.530 | 166 | 98 | 3 | 109 | 274 | 485 | 636 | 5.34e-23 | 99.4 |
MS.gene063727.t1 | AT4G13460 | 32.530 | 166 | 98 | 3 | 109 | 274 | 485 | 636 | 5.34e-23 | 99.4 |
MS.gene063727.t1 | AT2G24740 | 31.797 | 217 | 117 | 9 | 91 | 300 | 558 | 750 | 3.31e-22 | 97.4 |
MS.gene063727.t1 | AT1G17770 | 31.390 | 223 | 116 | 8 | 91 | 300 | 490 | 688 | 3.81e-22 | 97.1 |
MS.gene063727.t1 | AT2G33290 | 25.660 | 265 | 124 | 8 | 68 | 288 | 412 | 647 | 2.46e-21 | 94.7 |
MS.gene063727.t1 | AT2G33290 | 25.660 | 265 | 124 | 8 | 68 | 288 | 412 | 647 | 2.46e-21 | 94.7 |
MS.gene063727.t1 | AT2G33290 | 25.660 | 265 | 124 | 8 | 68 | 288 | 412 | 647 | 2.46e-21 | 94.7 |
MS.gene063727.t1 | AT2G33290 | 25.660 | 265 | 124 | 8 | 68 | 288 | 412 | 647 | 2.46e-21 | 94.7 |
MS.gene063727.t1 | AT3G04380 | 32.381 | 210 | 107 | 8 | 96 | 303 | 257 | 433 | 4.15e-20 | 90.5 |
MS.gene063727.t1 | AT3G04380 | 32.381 | 210 | 107 | 8 | 96 | 303 | 257 | 433 | 4.26e-20 | 90.5 |
MS.gene063727.t1 | AT3G04380 | 32.381 | 210 | 107 | 8 | 96 | 303 | 284 | 460 | 5.08e-20 | 90.5 |
MS.gene063727.t1 | AT3G04380 | 32.381 | 210 | 107 | 8 | 96 | 303 | 268 | 444 | 5.14e-20 | 90.5 |
MS.gene063727.t1 | AT3G04380 | 32.381 | 210 | 107 | 8 | 96 | 303 | 241 | 417 | 5.33e-20 | 90.1 |
MS.gene063727.t1 | AT3G04380 | 32.381 | 210 | 107 | 8 | 96 | 303 | 284 | 460 | 5.48e-20 | 90.5 |
MS.gene063727.t1 | AT1G04050 | 28.095 | 210 | 113 | 7 | 96 | 303 | 444 | 617 | 1.15e-14 | 74.7 |
MS.gene063727.t1 | AT1G04050 | 28.095 | 210 | 113 | 7 | 96 | 303 | 548 | 721 | 1.33e-14 | 74.7 |
MS.gene063727.t1 | AT1G04050 | 28.095 | 210 | 113 | 7 | 96 | 303 | 548 | 721 | 1.33e-14 | 74.7 |
MS.gene063727.t1 | AT1G76710 | 31.720 | 186 | 75 | 9 | 118 | 301 | 90 | 225 | 5.33e-13 | 69.7 |
MS.gene063727.t1 | AT1G76710 | 31.720 | 186 | 75 | 9 | 118 | 301 | 90 | 225 | 5.44e-13 | 69.7 |
MS.gene063727.t1 | AT1G76710 | 31.720 | 186 | 75 | 9 | 118 | 301 | 90 | 225 | 5.44e-13 | 69.7 |
MS.gene063727.t1 | AT1G76710 | 31.720 | 186 | 75 | 9 | 118 | 301 | 90 | 225 | 5.46e-13 | 69.7 |
MS.gene063727.t1 | AT2G23740 | 30.657 | 137 | 45 | 3 | 109 | 233 | 1216 | 1314 | 3.00e-12 | 67.8 |
MS.gene063727.t1 | AT2G23740 | 30.657 | 137 | 45 | 3 | 109 | 233 | 1216 | 1314 | 3.00e-12 | 67.8 |
Find 55 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTACCACTTGAAGCTTCTA+AGG | 0.221245 | 1.1:+28043235 | None:intergenic |
GATGAGTATTTATTTAATAT+TGG | 0.247972 | 1.1:-28043341 | MS.gene063727:CDS |
AACATTTCGAGCAAACAAAT+TGG | 0.261209 | 1.1:+28043118 | None:intergenic |
CGAGTAATGTATTGAAAATA+TGG | 0.296319 | 1.1:+28043629 | None:intergenic |
ACAATTGATGCTGCTAAGTA+TGG | 0.305938 | 1.1:-28043176 | MS.gene063727:CDS |
TCAGAGAATGCAATTCCTTC+TGG | 0.338329 | 1.1:-28043431 | MS.gene063727:CDS |
GAATCTTCGAAAAGCCATTC+AGG | 0.347836 | 1.1:+28043596 | None:intergenic |
CTCGTAACATTTATCCTGAA+TGG | 0.372209 | 1.1:-28043610 | MS.gene063727:CDS |
AGGTGAGATTATTGAAGATC+AGG | 0.383100 | 1.1:-28043387 | MS.gene063727:CDS |
TTGTCACCTACTTCAATTCC+AGG | 0.384331 | 1.1:+28043745 | None:intergenic |
AGAACCCGTGACACTTTGAT+AGG | 0.402578 | 1.1:+28043820 | None:intergenic |
TTCATATATGGTTGATAGTA+AGG | 0.403159 | 1.1:-28043276 | MS.gene063727:CDS |
ATGGGAAGAGGATTCATATA+TGG | 0.412825 | 1.1:-28043288 | MS.gene063727:CDS |
ACAAATTGGGAGAACAACTA+TGG | 0.427505 | 1.1:+28043132 | None:intergenic |
ACATTTCGAGCAAACAAATT+GGG | 0.449844 | 1.1:+28043119 | None:intergenic |
TTCACAAGGTCTATAGTTCA+TGG | 0.458760 | 1.1:-28043307 | MS.gene063727:CDS |
CCCTCCACTCTTAAGAGCAC+AGG | 0.461039 | 1.1:+28043535 | None:intergenic |
GATCAAGTGATTGATTCAAA+TGG | 0.480841 | 1.1:-28042993 | MS.gene063727:CDS |
AAAATTATTGGAAATGTCCC+TGG | 0.496911 | 1.1:-28043763 | MS.gene063727:CDS |
CAAGACTAAGGCGAAAGGAT+GGG | 0.513493 | 1.1:-28043462 | MS.gene063727:CDS |
AAACTCGGTAACGAATTTAC+CGG | 0.517987 | 1.1:-28043853 | MS.gene063727:CDS |
CGTGCTCTCTGTGGAAAACT+CGG | 0.520054 | 1.1:-28043868 | MS.gene063727:CDS |
GGTCTATAGTTCATGGGAAG+AGG | 0.525490 | 1.1:-28043300 | MS.gene063727:CDS |
TCAAGACTAAGGCGAAAGGA+TGG | 0.530216 | 1.1:-28043463 | MS.gene063727:CDS |
GCCTGTGCTCTTAAGAGTGG+AGG | 0.530694 | 1.1:-28043536 | MS.gene063727:CDS |
AGAAGCTTCAAGTGGTAAAG+AGG | 0.540440 | 1.1:-28043231 | MS.gene063727:CDS |
AAGACTAAGGCGAAAGGATG+GGG | 0.542189 | 1.1:-28043461 | MS.gene063727:CDS |
TTACCACTTGAAGCTTCTAA+GGG | 0.542917 | 1.1:+28043236 | None:intergenic |
TTTGATAGGAAGCGCGTCGC+CGG | 0.553874 | 1.1:+28043834 | None:intergenic |
CTAAGTATGGTAACGTGGCA+AGG | 0.558339 | 1.1:-28043163 | MS.gene063727:CDS |
ATTGATGATCGATGTGATAG+TGG | 0.558469 | 1.1:-28043206 | MS.gene063727:CDS |
CGCTTCCTATCAAAGTGTCA+CGG | 0.559927 | 1.1:-28043825 | MS.gene063727:CDS |
ACTATCACATCGATCATCAA+TGG | 0.565161 | 1.1:+28043208 | None:intergenic |
TTTGCCTGTGCTCTTAAGAG+TGG | 0.575325 | 1.1:-28043539 | MS.gene063727:CDS |
AAGACGAAAGCATGTTATTG+CGG | 0.583822 | 1.1:-28042963 | MS.gene063727:CDS |
CCTGTGCTCTTAAGAGTGGA+GGG | 0.588175 | 1.1:-28043535 | MS.gene063727:CDS |
TCACAAGGTCTATAGTTCAT+GGG | 0.590256 | 1.1:-28043306 | MS.gene063727:CDS |
AAAGTCAGCTCATTCATGCT+CGG | 0.596521 | 1.1:+28043035 | None:intergenic |
GCTTCCTATCAAAGTGTCAC+GGG | 0.597827 | 1.1:-28043824 | MS.gene063727:CDS |
TTTACAATGATGATGATCTG+AGG | 0.599652 | 1.1:-28043094 | MS.gene063727:CDS |
TAATCGTATAGGTTCTGGCA+AGG | 0.611986 | 1.1:-28043654 | MS.gene063727:intron |
ATGATCGATGTGATAGTGGT+AGG | 0.614728 | 1.1:-28043202 | MS.gene063727:CDS |
GAGGCAAGTACATTCACGAT+GGG | 0.620401 | 1.1:-28043789 | MS.gene063727:CDS |
AATGTCCCTGGAATTGAAGT+AGG | 0.621360 | 1.1:-28043751 | MS.gene063727:intron |
AATCTCATCAATACAGTCGA+CGG | 0.622465 | 1.1:+28042925 | None:intergenic |
GGTAACTTCCGTGCTCTCTG+TGG | 0.631604 | 1.1:-28043877 | MS.gene063727:CDS |
TGTCACCTACTTCAATTCCA+GGG | 0.640833 | 1.1:+28043746 | None:intergenic |
TGGCAATTATTATATTCACA+AGG | 0.642489 | 1.1:-28043321 | MS.gene063727:CDS |
TCACAAATAAAACTTCCAGA+AGG | 0.644047 | 1.1:+28043416 | None:intergenic |
CAACCCTTAGAAGCTTCAAG+TGG | 0.647600 | 1.1:-28043239 | MS.gene063727:CDS |
AGAACATTTACGCCCAACAG+AGG | 0.655904 | 1.1:+28043574 | None:intergenic |
AGAGGCAAGTACATTCACGA+TGG | 0.665950 | 1.1:-28043790 | MS.gene063727:CDS |
TCACGGGTTCTAAAACAAAG+AGG | 0.679698 | 1.1:-28043808 | MS.gene063727:CDS |
GCTGCATATAGCATGATGTG+TGG | 0.717627 | 1.1:+28043068 | None:intergenic |
TGCTGCTAAGTATGGTAACG+TGG | 0.728265 | 1.1:-28043168 | MS.gene063727:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GATGAGTATTTATTTAATAT+TGG | - | chr1.1:28043504-28043523 | MS.gene063727:CDS | 15.0% |
!!! | AGTTTTATTTGTGAGTATTT+AGG | - | chr1.1:28043438-28043457 | MS.gene063727:CDS | 20.0% |
! | CAGAAAGTAAAAACAACATT+AGG | - | chr1.1:28042947-28042966 | MS.gene063727:CDS | 25.0% |
! | CGAGTAATGTATTGAAAATA+TGG | + | chr1.1:28043219-28043238 | None:intergenic | 25.0% |
! | TGGCAATTATTATATTCACA+AGG | - | chr1.1:28043524-28043543 | MS.gene063727:CDS | 25.0% |
!!! | ATCTCATTTTTCTTTACTCT+AGG | + | chr1.1:28043342-28043361 | None:intergenic | 25.0% |
!!! | ATGTTGTTTTTACTTTCTGA+AGG | + | chr1.1:28042946-28042965 | None:intergenic | 25.0% |
!!! | TTCATATATGGTTGATAGTA+AGG | - | chr1.1:28043569-28043588 | MS.gene063727:CDS | 25.0% |
AAAATTATTGGAAATGTCCC+TGG | - | chr1.1:28043082-28043101 | MS.gene063727:CDS | 30.0% | |
AACATTTCGAGCAAACAAAT+TGG | + | chr1.1:28043730-28043749 | None:intergenic | 30.0% | |
ACATTTCGAGCAAACAAATT+GGG | + | chr1.1:28043729-28043748 | None:intergenic | 30.0% | |
CACGATGGGAAAAAAATTAT+TGG | - | chr1.1:28043070-28043089 | MS.gene063727:CDS | 30.0% | |
TCACAAATAAAACTTCCAGA+AGG | + | chr1.1:28043432-28043451 | None:intergenic | 30.0% | |
TTATGTGTGGTTAATCGTAT+AGG | - | chr1.1:28043180-28043199 | MS.gene063727:CDS | 30.0% | |
! | GATCAAGTGATTGATTCAAA+TGG | - | chr1.1:28043852-28043871 | MS.gene063727:CDS | 30.0% |
! | TTTACAATGATGATGATCTG+AGG | - | chr1.1:28043751-28043770 | MS.gene063727:intron | 30.0% |
!! | GCTTCAAATTTTCAAGACTA+AGG | - | chr1.1:28043371-28043390 | MS.gene063727:CDS | 30.0% |
AAACTCGGTAACGAATTTAC+CGG | - | chr1.1:28042992-28043011 | MS.gene063727:CDS | 35.0% | |
ACAAATTGGGAGAACAACTA+TGG | + | chr1.1:28043716-28043735 | None:intergenic | 35.0% | |
ACAATTGATGCTGCTAAGTA+TGG | - | chr1.1:28043669-28043688 | MS.gene063727:intron | 35.0% | |
ACTATCACATCGATCATCAA+TGG | + | chr1.1:28043640-28043659 | None:intergenic | 35.0% | |
AGGTGAGATTATTGAAGATC+AGG | - | chr1.1:28043458-28043477 | MS.gene063727:CDS | 35.0% | |
ATGGGAAGAGGATTCATATA+TGG | - | chr1.1:28043557-28043576 | MS.gene063727:CDS | 35.0% | |
CTCGTAACATTTATCCTGAA+TGG | - | chr1.1:28043235-28043254 | MS.gene063727:CDS | 35.0% | |
TAGGTGACAAGTTTCAGTAT+TGG | - | chr1.1:28043113-28043132 | MS.gene063727:CDS | 35.0% | |
TCACAAGGTCTATAGTTCAT+GGG | - | chr1.1:28043539-28043558 | MS.gene063727:CDS | 35.0% | |
TTACCACTTGAAGCTTCTAA+GGG | + | chr1.1:28043612-28043631 | None:intergenic | 35.0% | |
TTCACAAGGTCTATAGTTCA+TGG | - | chr1.1:28043538-28043557 | MS.gene063727:CDS | 35.0% | |
TTTACCACTTGAAGCTTCTA+AGG | + | chr1.1:28043613-28043632 | None:intergenic | 35.0% | |
! | AAGACGAAAGCATGTTATTG+CGG | - | chr1.1:28043882-28043901 | MS.gene063727:CDS | 35.0% |
! | ATTGATGATCGATGTGATAG+TGG | - | chr1.1:28043639-28043658 | MS.gene063727:CDS | 35.0% |
! | TTGGTCTCATTGATTATGTG+TGG | - | chr1.1:28043167-28043186 | MS.gene063727:CDS | 35.0% |
! | TTTTCGAAGATTCCTCTGTT+GGG | - | chr1.1:28043259-28043278 | MS.gene063727:CDS | 35.0% |
!! | ATTTTCAAGACTAAGGCGAA+AGG | - | chr1.1:28043378-28043397 | MS.gene063727:CDS | 35.0% |
AAAGTCAGCTCATTCATGCT+CGG | + | chr1.1:28043813-28043832 | None:intergenic | 40.0% | |
AATGTCCCTGGAATTGAAGT+AGG | - | chr1.1:28043094-28043113 | MS.gene063727:CDS | 40.0% | |
AGAAGCTTCAAGTGGTAAAG+AGG | - | chr1.1:28043614-28043633 | MS.gene063727:CDS | 40.0% | |
GAATCTTCGAAAAGCCATTC+AGG | + | chr1.1:28043252-28043271 | None:intergenic | 40.0% | |
GTGGTTAATCGTATAGGTTC+TGG | - | chr1.1:28043186-28043205 | MS.gene063727:CDS | 40.0% | |
TCAGAGAATGCAATTCCTTC+TGG | - | chr1.1:28043414-28043433 | MS.gene063727:CDS | 40.0% | |
TGGCAAGAACTCAATGTTGT+TGG | - | chr1.1:28043133-28043152 | MS.gene063727:CDS | 40.0% | |
TGTCACCTACTTCAATTCCA+GGG | + | chr1.1:28043102-28043121 | None:intergenic | 40.0% | |
TTGTCACCTACTTCAATTCC+AGG | + | chr1.1:28043103-28043122 | None:intergenic | 40.0% | |
! | CTTTTCGAAGATTCCTCTGT+TGG | - | chr1.1:28043258-28043277 | MS.gene063727:CDS | 40.0% |
! | GTTGTTGGTCTCAATGTTGT+TGG | - | chr1.1:28043148-28043167 | MS.gene063727:CDS | 40.0% |
! | TAATCGTATAGGTTCTGGCA+AGG | - | chr1.1:28043191-28043210 | MS.gene063727:CDS | 40.0% |
!! | ATGATCGATGTGATAGTGGT+AGG | - | chr1.1:28043643-28043662 | MS.gene063727:CDS | 40.0% |
!! | TCACGGGTTCTAAAACAAAG+AGG | - | chr1.1:28043037-28043056 | MS.gene063727:CDS | 40.0% |
AAGACTAAGGCGAAAGGATG+GGG | - | chr1.1:28043384-28043403 | MS.gene063727:CDS | 45.0% | |
AGAACATTTACGCCCAACAG+AGG | + | chr1.1:28043274-28043293 | None:intergenic | 45.0% | |
AGAACCCGTGACACTTTGAT+AGG | + | chr1.1:28043028-28043047 | None:intergenic | 45.0% | |
AGAGGCAAGTACATTCACGA+TGG | - | chr1.1:28043055-28043074 | MS.gene063727:CDS | 45.0% | |
CAACCCTTAGAAGCTTCAAG+TGG | - | chr1.1:28043606-28043625 | MS.gene063727:CDS | 45.0% | |
CAAGACTAAGGCGAAAGGAT+GGG | - | chr1.1:28043383-28043402 | MS.gene063727:CDS | 45.0% | |
GAGGCAAGTACATTCACGAT+GGG | - | chr1.1:28043056-28043075 | MS.gene063727:CDS | 45.0% | |
GCTGCATATAGCATGATGTG+TGG | + | chr1.1:28043780-28043799 | None:intergenic | 45.0% | |
GGTCTATAGTTCATGGGAAG+AGG | - | chr1.1:28043545-28043564 | MS.gene063727:CDS | 45.0% | |
TCAAGACTAAGGCGAAAGGA+TGG | - | chr1.1:28043382-28043401 | MS.gene063727:CDS | 45.0% | |
TTTGCCTGTGCTCTTAAGAG+TGG | - | chr1.1:28043306-28043325 | MS.gene063727:CDS | 45.0% | |
! | CGCTTCCTATCAAAGTGTCA+CGG | - | chr1.1:28043020-28043039 | MS.gene063727:CDS | 45.0% |
! | CTAAGTATGGTAACGTGGCA+AGG | - | chr1.1:28043682-28043701 | MS.gene063727:intron | 45.0% |
! | GCTTCCTATCAAAGTGTCAC+GGG | - | chr1.1:28043021-28043040 | MS.gene063727:CDS | 45.0% |
! | TGCTGCTAAGTATGGTAACG+TGG | - | chr1.1:28043677-28043696 | MS.gene063727:intron | 45.0% |
CCTGTGCTCTTAAGAGTGGA+GGG | - | chr1.1:28043310-28043329 | MS.gene063727:CDS | 50.0% | |
CGTGCTCTCTGTGGAAAACT+CGG | - | chr1.1:28042977-28042996 | MS.gene063727:CDS | 50.0% | |
! | CGAGTTTTCCACAGAGAGCA+CGG | + | chr1.1:28042979-28042998 | None:intergenic | 50.0% |
GCCTGTGCTCTTAAGAGTGG+AGG | - | chr1.1:28043309-28043328 | MS.gene063727:CDS | 55.0% | |
GGTAACTTCCGTGCTCTCTG+TGG | - | chr1.1:28042968-28042987 | MS.gene063727:CDS | 55.0% | |
! | CCCTCCACTCTTAAGAGCAC+AGG | + | chr1.1:28043313-28043332 | None:intergenic | 55.0% |
! | TTTGATAGGAAGCGCGTCGC+CGG | + | chr1.1:28043014-28043033 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 28042932 | 28043935 | 28042932 | ID=MS.gene063727 |
chr1.1 | mRNA | 28042932 | 28043935 | 28042932 | ID=MS.gene063727.t1;Parent=MS.gene063727 |
chr1.1 | exon | 28043752 | 28043935 | 28043752 | ID=MS.gene063727.t1.exon1;Parent=MS.gene063727.t1 |
chr1.1 | CDS | 28043752 | 28043935 | 28043752 | ID=cds.MS.gene063727.t1;Parent=MS.gene063727.t1 |
chr1.1 | exon | 28042932 | 28043665 | 28042932 | ID=MS.gene063727.t1.exon2;Parent=MS.gene063727.t1 |
chr1.1 | CDS | 28042932 | 28043665 | 28042932 | ID=cds.MS.gene063727.t1;Parent=MS.gene063727.t1 |
Gene Sequence |
Protein sequence |