Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063779.t1 | XP_024632961.1 | 88.8 | 456 | 43 | 1 | 1 | 448 | 81 | 536 | 2.40E-239 | 837.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063779.t1 | Q9SZL8 | 27.7 | 440 | 299 | 5 | 6 | 443 | 104 | 526 | 6.6e-52 | 206.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063779.t1 | D3YBB9 | 82.8 | 447 | 77 | 0 | 2 | 448 | 114 | 560 | 1.3e-221 | 778.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene063779.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063779.t1 | MTR_0558s0020 | 88.312 | 231 | 27 | 0 | 1 | 231 | 66 | 296 | 4.51e-155 | 442 |
| MS.gene063779.t1 | MTR_6g090505 | 83.122 | 237 | 40 | 0 | 1 | 237 | 1 | 237 | 9.30e-145 | 418 |
| MS.gene063779.t1 | MTR_6g090505 | 66.667 | 102 | 7 | 2 | 332 | 431 | 230 | 306 | 3.51e-33 | 129 |
| MS.gene063779.t1 | MTR_1g083640 | 90.196 | 204 | 20 | 0 | 1 | 204 | 81 | 284 | 1.11e-138 | 400 |
| MS.gene063779.t1 | MTR_8g446020 | 79.386 | 228 | 47 | 0 | 4 | 231 | 29 | 256 | 1.52e-132 | 383 |
| MS.gene063779.t1 | MTR_2g014100 | 87.209 | 172 | 22 | 0 | 1 | 172 | 74 | 245 | 1.83e-109 | 324 |
| MS.gene063779.t1 | MTR_0337s0040 | 78.125 | 192 | 42 | 0 | 4 | 195 | 30 | 221 | 7.69e-108 | 319 |
| MS.gene063779.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 27 | 168 | 3 | 144 | 6.18e-89 | 268 |
| MS.gene063779.t1 | MTR_0019s0290 | 82.237 | 152 | 27 | 0 | 18 | 169 | 9 | 160 | 5.04e-88 | 266 |
| MS.gene063779.t1 | MTR_3g008240 | 86.232 | 138 | 19 | 0 | 1 | 138 | 66 | 203 | 2.12e-82 | 253 |
| MS.gene063779.t1 | MTR_4g040430 | 84.783 | 138 | 17 | 1 | 1 | 138 | 65 | 198 | 3.00e-80 | 247 |
| MS.gene063779.t1 | MTR_5g071590 | 79.808 | 104 | 21 | 0 | 1 | 104 | 78 | 181 | 6.99e-58 | 189 |
| MS.gene063779.t1 | MTR_6g051425 | 32.601 | 273 | 156 | 5 | 21 | 277 | 64 | 324 | 9.60e-37 | 138 |
| MS.gene063779.t1 | MTR_0337s0060 | 89.394 | 66 | 7 | 0 | 383 | 448 | 21 | 86 | 5.60e-34 | 128 |
| MS.gene063779.t1 | MTR_1281s0010 | 80.952 | 63 | 12 | 0 | 1 | 63 | 47 | 109 | 7.53e-30 | 112 |
| MS.gene063779.t1 | MTR_1g070355 | 25.177 | 282 | 191 | 6 | 21 | 298 | 119 | 384 | 9.79e-16 | 80.1 |
| MS.gene063779.t1 | MTR_0402s0040 | 26.000 | 150 | 96 | 3 | 20 | 169 | 71 | 205 | 3.90e-13 | 71.6 |
| MS.gene063779.t1 | MTR_0337s0050 | 72.222 | 36 | 10 | 0 | 195 | 230 | 14 | 49 | 4.12e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063779.t1 | AT4G38180 | 28.638 | 426 | 285 | 5 | 20 | 443 | 118 | 526 | 3.07e-60 | 211 |
| MS.gene063779.t1 | AT4G15090 | 26.289 | 388 | 277 | 5 | 59 | 443 | 121 | 502 | 4.42e-42 | 159 |
| MS.gene063779.t1 | AT4G15090 | 26.289 | 388 | 277 | 5 | 59 | 443 | 121 | 502 | 4.42e-42 | 159 |
| MS.gene063779.t1 | AT4G15090 | 26.289 | 388 | 277 | 5 | 59 | 443 | 121 | 502 | 4.42e-42 | 159 |
| MS.gene063779.t1 | AT4G15090 | 26.289 | 388 | 277 | 5 | 59 | 443 | 121 | 502 | 4.42e-42 | 159 |
| MS.gene063779.t1 | AT4G15090 | 26.289 | 388 | 277 | 5 | 59 | 443 | 121 | 502 | 4.42e-42 | 159 |
| MS.gene063779.t1 | AT1G76320 | 25.986 | 431 | 281 | 9 | 19 | 443 | 41 | 439 | 2.10e-40 | 154 |
| MS.gene063779.t1 | AT3G06250 | 26.196 | 439 | 255 | 9 | 20 | 457 | 235 | 605 | 2.55e-40 | 154 |
| MS.gene063779.t1 | AT3G06250 | 26.196 | 439 | 255 | 9 | 20 | 457 | 235 | 605 | 2.55e-40 | 154 |
| MS.gene063779.t1 | AT3G06250 | 26.196 | 439 | 255 | 9 | 20 | 457 | 235 | 605 | 2.55e-40 | 154 |
| MS.gene063779.t1 | AT2G27110 | 27.273 | 385 | 255 | 7 | 63 | 443 | 108 | 471 | 3.20e-40 | 154 |
| MS.gene063779.t1 | AT2G27110 | 27.273 | 385 | 255 | 7 | 63 | 443 | 108 | 471 | 3.20e-40 | 154 |
| MS.gene063779.t1 | AT1G76320 | 25.986 | 431 | 281 | 9 | 19 | 443 | 41 | 439 | 3.69e-40 | 154 |
| MS.gene063779.t1 | AT1G76320 | 25.986 | 431 | 281 | 9 | 19 | 443 | 41 | 439 | 3.69e-40 | 154 |
| MS.gene063779.t1 | AT1G76320 | 25.986 | 431 | 281 | 9 | 19 | 443 | 41 | 439 | 3.95e-40 | 153 |
| MS.gene063779.t1 | AT2G27110 | 29.630 | 297 | 201 | 3 | 149 | 443 | 36 | 326 | 1.44e-39 | 152 |
| MS.gene063779.t1 | AT4G38170 | 28.986 | 276 | 185 | 4 | 171 | 443 | 24 | 291 | 2.07e-39 | 149 |
| MS.gene063779.t1 | AT1G10240 | 26.150 | 413 | 272 | 11 | 43 | 433 | 102 | 503 | 5.84e-36 | 141 |
| MS.gene063779.t1 | AT1G10240 | 26.150 | 413 | 272 | 11 | 43 | 433 | 102 | 503 | 5.84e-36 | 141 |
| MS.gene063779.t1 | AT5G18960 | 28.440 | 327 | 218 | 7 | 134 | 457 | 316 | 629 | 2.01e-34 | 137 |
| MS.gene063779.t1 | AT5G18960 | 28.440 | 327 | 218 | 7 | 134 | 457 | 316 | 629 | 2.01e-34 | 137 |
| MS.gene063779.t1 | AT5G28530 | 25.971 | 412 | 266 | 11 | 5 | 398 | 84 | 474 | 8.96e-33 | 132 |
| MS.gene063779.t1 | AT5G28530 | 25.971 | 412 | 266 | 11 | 5 | 398 | 84 | 474 | 1.03e-32 | 131 |
| MS.gene063779.t1 | AT5G28530 | 25.971 | 412 | 266 | 11 | 5 | 398 | 84 | 474 | 1.03e-32 | 131 |
| MS.gene063779.t1 | AT3G22170 | 21.847 | 444 | 310 | 7 | 5 | 443 | 100 | 511 | 1.04e-32 | 132 |
| MS.gene063779.t1 | AT3G22170 | 21.847 | 444 | 310 | 7 | 5 | 443 | 100 | 511 | 1.04e-32 | 132 |
| MS.gene063779.t1 | AT2G32250 | 24.249 | 433 | 258 | 9 | 5 | 431 | 68 | 436 | 8.84e-31 | 126 |
| MS.gene063779.t1 | AT2G32250 | 24.249 | 433 | 258 | 9 | 5 | 431 | 27 | 395 | 9.20e-31 | 126 |
| MS.gene063779.t1 | AT2G32250 | 24.249 | 433 | 258 | 9 | 5 | 431 | 27 | 395 | 1.01e-30 | 126 |
| MS.gene063779.t1 | AT2G32250 | 24.249 | 433 | 258 | 9 | 5 | 431 | 68 | 436 | 1.08e-30 | 126 |
| MS.gene063779.t1 | AT2G32250 | 24.249 | 433 | 258 | 9 | 5 | 431 | 68 | 436 | 1.08e-30 | 126 |
| MS.gene063779.t1 | AT2G32250 | 24.249 | 433 | 258 | 9 | 5 | 431 | 68 | 436 | 1.08e-30 | 126 |
| MS.gene063779.t1 | AT2G32250 | 24.249 | 433 | 258 | 9 | 5 | 431 | 68 | 436 | 1.28e-30 | 125 |
| MS.gene063779.t1 | AT2G32250 | 24.249 | 433 | 258 | 9 | 5 | 431 | 68 | 436 | 1.28e-30 | 125 |
| MS.gene063779.t1 | AT1G80010 | 24.490 | 441 | 283 | 13 | 4 | 429 | 129 | 534 | 9.90e-30 | 123 |
| MS.gene063779.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 106 | 369 | 8.65e-29 | 120 |
| MS.gene063779.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 1.17e-28 | 120 |
| MS.gene063779.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 1.17e-28 | 120 |
| MS.gene063779.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 177 | 440 | 1.25e-28 | 119 |
| MS.gene063779.t1 | AT4G19990 | 27.985 | 268 | 186 | 3 | 155 | 419 | 163 | 426 | 1.30e-28 | 119 |
| MS.gene063779.t1 | AT4G19990 | 27.985 | 268 | 186 | 3 | 155 | 419 | 163 | 426 | 1.30e-28 | 119 |
| MS.gene063779.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 1.33e-28 | 119 |
| MS.gene063779.t1 | AT1G52520 | 22.958 | 453 | 310 | 11 | 2 | 448 | 112 | 531 | 8.50e-28 | 117 |
Find 63 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 8.1:+64024279 | MS.gene063779:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 8.1:+64024546 | MS.gene063779:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 8.1:+64023998 | MS.gene063779:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 8.1:+64023484 | MS.gene063779:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 8.1:+64024031 | MS.gene063779:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 8.1:-64024125 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 8.1:+64024320 | MS.gene063779:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 8.1:-64024143 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 8.1:-64023534 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 8.1:+64024579 | MS.gene063779:CDS |
| GTATGTATTGGTCTTCAGTT+TGG | 0.366593 | 8.1:+64024419 | MS.gene063779:CDS |
| TCATGCTGATTTGGACTTCA+AGG | 0.372476 | 8.1:+64024588 | MS.gene063779:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 8.1:+64023541 | MS.gene063779:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 8.1:+64023533 | MS.gene063779:CDS |
| TGAATGTTTATAAGATATAT+AGG | 0.391990 | 8.1:+64023095 | MS.gene063779:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 8.1:-64023004 | None:intergenic |
| TATGTATTGGTCTTCAGTTT+GGG | 0.407479 | 8.1:+64024420 | MS.gene063779:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 8.1:+64023181 | MS.gene063779:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 8.1:+64023063 | MS.gene063779:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 8.1:-64024136 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 8.1:+64023046 | MS.gene063779:CDS |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 8.1:+64022929 | MS.gene063779:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 8.1:+64023211 | MS.gene063779:CDS |
| CTCATTCAAATCGTATGTAT+TGG | 0.458322 | 8.1:+64024407 | MS.gene063779:CDS |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 8.1:-64023151 | None:intergenic |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 8.1:+64024374 | MS.gene063779:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 8.1:+64022895 | MS.gene063779:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 8.1:+64023256 | MS.gene063779:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 8.1:-64023040 | None:intergenic |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 8.1:+64023324 | MS.gene063779:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 8.1:+64022889 | MS.gene063779:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 8.1:-64024011 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 8.1:+64024321 | MS.gene063779:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 8.1:+64023337 | MS.gene063779:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 8.1:+64024560 | MS.gene063779:CDS |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 8.1:+64023243 | MS.gene063779:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 8.1:-64023429 | None:intergenic |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 8.1:-64023295 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.514147 | 8.1:+64024425 | MS.gene063779:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 8.1:-64024528 | None:intergenic |
| GGACCGCATAAGCTGACTGC+TGG | 0.530780 | 8.1:-64024641 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 8.1:+64022940 | MS.gene063779:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 8.1:-64024523 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 8.1:+64022941 | MS.gene063779:CDS |
| TGTTTATAAGATATATAGGT+GGG | 0.546370 | 8.1:+64023099 | MS.gene063779:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 8.1:-64023139 | None:intergenic |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 8.1:-64024156 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 8.1:+64023391 | MS.gene063779:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 8.1:+64023259 | MS.gene063779:CDS |
| GACCGCATAAGCTGACTGCT+GGG | 0.584869 | 8.1:-64024640 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 8.1:+64023250 | MS.gene063779:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 8.1:+64024142 | MS.gene063779:CDS |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 8.1:+64023330 | MS.gene063779:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 8.1:+64023244 | MS.gene063779:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 8.1:+64023333 | MS.gene063779:CDS |
| ATCCCAGCAGTCAGCTTATG+CGG | 0.606153 | 8.1:+64024638 | MS.gene063779:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 8.1:-64024376 | None:intergenic |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 8.1:-64022989 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 8.1:+64023264 | MS.gene063779:CDS |
| ATGTTTATAAGATATATAGG+TGG | 0.626613 | 8.1:+64023098 | MS.gene063779:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 8.1:+64024561 | MS.gene063779:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 8.1:-64025111 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 8.1:+64024138 | MS.gene063779:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATGTTTATAAGATATAT+AGG | + | chr8.1:64023095-64023114 | MS.gene063779:CDS | 15.0% |
| !!! | ATGATGAAAAACTATTTTAA+TGG | + | chr8.1:64024349-64024368 | MS.gene063779:CDS | 15.0% |
| !! | ATGTTTATAAGATATATAGG+TGG | + | chr8.1:64023098-64023117 | MS.gene063779:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr8.1:64022889-64022908 | MS.gene063779:CDS | 20.0% |
| !! | TGTTTATAAGATATATAGGT+GGG | + | chr8.1:64023099-64023118 | MS.gene063779:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | + | chr8.1:64023716-64023735 | MS.gene063779:intron | 20.0% |
| !!! | TGAAAAACTATTTTAATGGA+AGG | + | chr8.1:64024353-64024372 | MS.gene063779:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr8.1:64023688-64023707 | MS.gene063779:intron | 20.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr8.1:64022895-64022914 | MS.gene063779:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr8.1:64023533-64023552 | MS.gene063779:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr8.1:64023559-64023578 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr8.1:64024720-64024739 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr8.1:64024546-64024565 | MS.gene063779:CDS | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr8.1:64023606-64023625 | MS.gene063779:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr8.1:64024685-64024704 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr8.1:64024720-64024739 | MS.gene063779:intron | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr8.1:64024279-64024298 | MS.gene063779:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr8.1:64023708-64023727 | MS.gene063779:intron | 25.0% |
| !! | TCAATTTCGAATGTTTTTCA+AGG | + | chr8.1:64024178-64024197 | MS.gene063779:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr8.1:64023969-64023988 | MS.gene063779:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr8.1:64023446-64023465 | MS.gene063779:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | + | chr8.1:64023447-64023466 | MS.gene063779:CDS | 25.0% |
| !!! | ATGTTCTGGTTTAGAATTAA+AGG | + | chr8.1:64023620-64023639 | MS.gene063779:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr8.1:64024821-64024840 | MS.gene063779:intron | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr8.1:64022885-64022904 | None:intergenic | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr8.1:64023211-64023230 | MS.gene063779:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr8.1:64024822-64024841 | MS.gene063779:intron | 25.0% |
| AAACACATATGATCTTTCCA+TGG | - | chr8.1:64023779-64023798 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr8.1:64022941-64022960 | MS.gene063779:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr8.1:64023541-64023560 | MS.gene063779:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr8.1:64024320-64024339 | MS.gene063779:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | + | chr8.1:64023244-64023263 | MS.gene063779:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr8.1:64024321-64024340 | MS.gene063779:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr8.1:64024014-64024033 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | - | chr8.1:64024893-64024912 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr8.1:64023484-64023503 | MS.gene063779:CDS | 30.0% | |
| CTCATTCAAATCGTATGTAT+TGG | + | chr8.1:64024407-64024426 | MS.gene063779:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr8.1:64024725-64024744 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | + | chr8.1:64023645-64023664 | MS.gene063779:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr8.1:64024723-64024742 | MS.gene063779:intron | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr8.1:64024235-64024254 | MS.gene063779:CDS | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr8.1:64024894-64024913 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr8.1:64023537-64023556 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr8.1:64023030-64023049 | MS.gene063779:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr8.1:64024531-64024550 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr8.1:64022940-64022959 | MS.gene063779:CDS | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr8.1:64023412-64023431 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr8.1:64024665-64024684 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr8.1:64023298-64023317 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr8.1:64023928-64023947 | MS.gene063779:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr8.1:64023142-64023161 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr8.1:64023063-64023082 | MS.gene063779:CDS | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | + | chr8.1:64024780-64024799 | MS.gene063779:intron | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr8.1:64023288-64023307 | MS.gene063779:CDS | 30.0% |
| ! | GGTTTCAAATGTTGATGTTT+TGG | + | chr8.1:64024843-64024862 | MS.gene063779:intron | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr8.1:64024128-64024147 | None:intergenic | 30.0% |
| ! | TGGTTTAGAATTAAAGGTTC+TGG | + | chr8.1:64023626-64023645 | MS.gene063779:intron | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | + | chr8.1:64025005-64025024 | MS.gene063779:intron | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr8.1:64024905-64024924 | MS.gene063779:intron | 30.0% |
| !! | TATGTATTGGTCTTCAGTTT+GGG | + | chr8.1:64024420-64024439 | MS.gene063779:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr8.1:64024906-64024925 | MS.gene063779:intron | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr8.1:64025002-64025021 | MS.gene063779:intron | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr8.1:64025070-64025089 | MS.gene063779:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr8.1:64024190-64024209 | MS.gene063779:CDS | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr8.1:64024560-64024579 | MS.gene063779:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr8.1:64024561-64024580 | MS.gene063779:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr8.1:64023181-64023200 | MS.gene063779:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr8.1:64024895-64024914 | None:intergenic | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | + | chr8.1:64022929-64022948 | MS.gene063779:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr8.1:64023029-64023048 | MS.gene063779:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr8.1:64023024-64023043 | MS.gene063779:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr8.1:64023243-64023262 | MS.gene063779:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr8.1:64022966-64022985 | MS.gene063779:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | + | chr8.1:64023324-64023343 | MS.gene063779:CDS | 35.0% | |
| TGTACAGAGCACAAATTCTA+AGG | - | chr8.1:64023755-64023774 | None:intergenic | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr8.1:64023007-64023026 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr8.1:64024031-64024050 | MS.gene063779:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr8.1:64024490-64024509 | MS.gene063779:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr8.1:64024203-64024222 | MS.gene063779:CDS | 35.0% |
| !! | CACAAATTCTAAGGCAAGAT+AGG | - | chr8.1:64023746-64023765 | None:intergenic | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | - | chr8.1:64025072-64025091 | None:intergenic | 35.0% |
| !! | GTATGTATTGGTCTTCAGTT+TGG | + | chr8.1:64024419-64024438 | MS.gene063779:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr8.1:64025012-64025031 | MS.gene063779:intron | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr8.1:64024074-64024093 | MS.gene063779:CDS | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr8.1:64025073-64025092 | MS.gene063779:intron | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr8.1:64024526-64024545 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr8.1:64023877-64023896 | None:intergenic | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr8.1:64024737-64024756 | MS.gene063779:intron | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr8.1:64024969-64024988 | MS.gene063779:intron | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr8.1:64024968-64024987 | MS.gene063779:intron | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | + | chr8.1:64023998-64024017 | MS.gene063779:intron | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr8.1:64024736-64024755 | MS.gene063779:intron | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr8.1:64024138-64024157 | MS.gene063779:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr8.1:64023873-64023892 | MS.gene063779:intron | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr8.1:64024139-64024158 | None:intergenic | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | + | chr8.1:64024875-64024894 | MS.gene063779:intron | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | - | chr8.1:64024379-64024398 | None:intergenic | 40.0% |
| ! | GAGGGATAATCATGCTGATT+TGG | + | chr8.1:64024579-64024598 | MS.gene063779:CDS | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr8.1:64025015-64025034 | MS.gene063779:intron | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr8.1:64022980-64022999 | None:intergenic | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | + | chr8.1:64024588-64024607 | MS.gene063779:CDS | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | + | chr8.1:64023250-64023269 | MS.gene063779:CDS | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr8.1:64023454-64023473 | MS.gene063779:CDS | 40.0% |
| AACTCGTCAAAAGGAGATGG+TGG | + | chr8.1:64023333-64023352 | MS.gene063779:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr8.1:64023391-64023410 | MS.gene063779:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr8.1:64022992-64023011 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | + | chr8.1:64023759-64023778 | MS.gene063779:intron | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr8.1:64024990-64025009 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr8.1:64023034-64023053 | MS.gene063779:CDS | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | + | chr8.1:64023330-64023349 | MS.gene063779:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr8.1:64024888-64024907 | None:intergenic | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | + | chr8.1:64024374-64024393 | MS.gene063779:CDS | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr8.1:64024970-64024989 | MS.gene063779:intron | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr8.1:64023432-64023451 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr8.1:64023043-64023062 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | + | chr8.1:64024442-64024461 | MS.gene063779:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr8.1:64024425-64024444 | MS.gene063779:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr8.1:64023046-64023065 | MS.gene063779:CDS | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | - | chr8.1:64024146-64024165 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | + | chr8.1:64024142-64024161 | MS.gene063779:CDS | 50.0% | |
| ATCCCAGCAGTCAGCTTATG+CGG | + | chr8.1:64024638-64024657 | MS.gene063779:CDS | 50.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | - | chr8.1:64023154-64023173 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | + | chr8.1:64024926-64024945 | MS.gene063779:intron | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr8.1:64023256-64023275 | MS.gene063779:CDS | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | - | chr8.1:64024159-64024178 | None:intergenic | 55.0% | |
| GACCGCATAAGCTGACTGCT+GGG | - | chr8.1:64024643-64024662 | None:intergenic | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr8.1:64023337-64023356 | MS.gene063779:CDS | 55.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr8.1:64023259-64023278 | MS.gene063779:CDS | 55.0% |
| GGACCGCATAAGCTGACTGC+TGG | - | chr8.1:64024644-64024663 | None:intergenic | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr8.1:64023264-64023283 | MS.gene063779:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 64022872 | 64025129 | 64022872 | ID=MS.gene063779 |
| chr8.1 | mRNA | 64022872 | 64025129 | 64022872 | ID=MS.gene063779.t1;Parent=MS.gene063779 |
| chr8.1 | exon | 64022872 | 64023562 | 64022872 | ID=MS.gene063779.t1.exon1;Parent=MS.gene063779.t1 |
| chr8.1 | CDS | 64022872 | 64023562 | 64022872 | ID=cds.MS.gene063779.t1;Parent=MS.gene063779.t1 |
| chr8.1 | exon | 64024008 | 64024659 | 64024008 | ID=MS.gene063779.t1.exon2;Parent=MS.gene063779.t1 |
| chr8.1 | CDS | 64024008 | 64024659 | 64024008 | ID=cds.MS.gene063779.t1;Parent=MS.gene063779.t1 |
| chr8.1 | exon | 64025090 | 64025129 | 64025090 | ID=MS.gene063779.t1.exon3;Parent=MS.gene063779.t1 |
| chr8.1 | CDS | 64025090 | 64025129 | 64025090 | ID=cds.MS.gene063779.t1;Parent=MS.gene063779.t1 |
| Gene Sequence |
| Protein sequence |
