Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063974.t1 | PNY01775.1 | 77.1 | 236 | 47 | 4 | 43 | 271 | 41 | 276 | 1.30E-78 | 303.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063974.t1 | Q9SND4 | 85.3 | 95 | 14 | 0 | 145 | 239 | 91 | 185 | 2.9e-39 | 163.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063974.t1 | A0A2K3NFF5 | 77.1 | 236 | 47 | 4 | 43 | 271 | 41 | 276 | 9.2e-79 | 303.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene063974.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063974.t1 | MTR_3g101810 | 95.604 | 273 | 9 | 3 | 1 | 272 | 1 | 271 | 0.0 | 520 |
MS.gene063974.t1 | MTR_5g017210 | 60.870 | 161 | 58 | 3 | 91 | 250 | 56 | 212 | 8.19e-48 | 159 |
MS.gene063974.t1 | MTR_8g093500 | 75.824 | 91 | 22 | 0 | 146 | 236 | 87 | 177 | 7.72e-46 | 155 |
MS.gene063974.t1 | MTR_2g100490 | 63.441 | 93 | 33 | 1 | 145 | 236 | 261 | 353 | 2.07e-27 | 109 |
MS.gene063974.t1 | MTR_8g015450 | 56.311 | 103 | 41 | 1 | 145 | 243 | 296 | 398 | 5.85e-27 | 108 |
MS.gene063974.t1 | MTR_7g069590 | 68.519 | 54 | 17 | 0 | 179 | 232 | 32 | 85 | 1.79e-21 | 88.2 |
MS.gene063974.t1 | MTR_5g079500 | 62.500 | 56 | 21 | 0 | 180 | 235 | 225 | 280 | 1.89e-18 | 83.6 |
MS.gene063974.t1 | MTR_1g018090 | 62.963 | 54 | 20 | 0 | 182 | 235 | 283 | 336 | 1.14e-17 | 82.0 |
MS.gene063974.t1 | MTR_1g106460 | 50.746 | 67 | 33 | 0 | 169 | 235 | 234 | 300 | 2.23e-17 | 80.9 |
MS.gene063974.t1 | MTR_5g005110 | 61.111 | 54 | 21 | 0 | 182 | 235 | 233 | 286 | 5.49e-17 | 79.7 |
MS.gene063974.t1 | MTR_1g106470 | 46.914 | 81 | 43 | 0 | 182 | 262 | 205 | 285 | 7.93e-17 | 79.0 |
MS.gene063974.t1 | MTR_3g103030 | 53.968 | 63 | 29 | 0 | 173 | 235 | 229 | 291 | 5.78e-16 | 76.6 |
MS.gene063974.t1 | MTR_4g131160 | 55.385 | 65 | 28 | 1 | 180 | 243 | 206 | 270 | 9.82e-15 | 73.9 |
MS.gene063974.t1 | MTR_4g131160 | 55.385 | 65 | 28 | 1 | 180 | 243 | 203 | 267 | 1.01e-14 | 73.9 |
MS.gene063974.t1 | MTR_1g080890 | 46.835 | 79 | 41 | 1 | 166 | 243 | 186 | 264 | 1.61e-14 | 72.8 |
MS.gene063974.t1 | MTR_1g106480 | 58.000 | 50 | 21 | 0 | 186 | 235 | 82 | 131 | 1.69e-13 | 67.0 |
MS.gene063974.t1 | MTR_2g067000 | 48.684 | 76 | 32 | 1 | 168 | 236 | 145 | 220 | 2.35e-13 | 68.9 |
MS.gene063974.t1 | MTR_1g060700 | 57.407 | 54 | 23 | 0 | 183 | 236 | 357 | 410 | 2.10e-12 | 67.0 |
MS.gene063974.t1 | MTR_4g033295 | 56.140 | 57 | 24 | 1 | 183 | 238 | 128 | 184 | 8.87e-12 | 63.2 |
MS.gene063974.t1 | MTR_1g052470 | 41.573 | 89 | 47 | 2 | 151 | 238 | 280 | 364 | 1.57e-11 | 64.3 |
MS.gene063974.t1 | MTR_2g089070 | 51.852 | 54 | 26 | 0 | 183 | 236 | 146 | 199 | 1.67e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063974.t1 | AT3G50330 | 78.182 | 110 | 23 | 1 | 146 | 254 | 92 | 201 | 3.29e-46 | 155 |
MS.gene063974.t1 | AT5G67060 | 86.170 | 94 | 13 | 0 | 146 | 239 | 83 | 176 | 1.34e-45 | 153 |
MS.gene063974.t1 | AT5G67060 | 86.170 | 94 | 13 | 0 | 146 | 239 | 95 | 188 | 1.88e-45 | 153 |
MS.gene063974.t1 | AT4G00120 | 69.318 | 88 | 27 | 0 | 149 | 236 | 88 | 175 | 1.05e-36 | 129 |
MS.gene063974.t1 | AT3G21330 | 65.217 | 92 | 32 | 0 | 145 | 236 | 241 | 332 | 1.22e-36 | 134 |
MS.gene063974.t1 | AT5G09750 | 74.444 | 90 | 23 | 0 | 146 | 235 | 92 | 181 | 9.28e-34 | 122 |
MS.gene063974.t1 | AT5G01305 | 56.579 | 76 | 33 | 0 | 174 | 249 | 38 | 113 | 2.14e-21 | 88.6 |
MS.gene063974.t1 | AT5G43175 | 50.725 | 69 | 34 | 0 | 167 | 235 | 126 | 194 | 1.45e-18 | 82.4 |
MS.gene063974.t1 | AT4G33880 | 64.815 | 54 | 19 | 0 | 182 | 235 | 275 | 328 | 1.99e-18 | 84.0 |
MS.gene063974.t1 | AT5G37800 | 53.333 | 75 | 28 | 1 | 168 | 235 | 189 | 263 | 3.46e-18 | 82.8 |
MS.gene063974.t1 | AT1G27740 | 52.941 | 68 | 32 | 0 | 168 | 235 | 162 | 229 | 4.63e-18 | 81.6 |
MS.gene063974.t1 | AT1G66470 | 63.636 | 55 | 20 | 0 | 181 | 235 | 203 | 257 | 7.17e-18 | 82.0 |
MS.gene063974.t1 | AT2G14760 | 62.963 | 54 | 20 | 0 | 182 | 235 | 246 | 299 | 2.36e-17 | 80.9 |
MS.gene063974.t1 | AT4G30980 | 54.054 | 74 | 33 | 1 | 170 | 242 | 127 | 200 | 5.91e-16 | 76.6 |
MS.gene063974.t1 | AT2G24260 | 53.165 | 79 | 29 | 3 | 171 | 242 | 28 | 105 | 6.89e-16 | 75.5 |
MS.gene063974.t1 | AT4G30980 | 53.333 | 75 | 34 | 1 | 169 | 242 | 174 | 248 | 1.08e-15 | 76.3 |
MS.gene063974.t1 | AT2G24260 | 53.165 | 79 | 29 | 3 | 171 | 242 | 131 | 208 | 1.70e-15 | 75.9 |
MS.gene063974.t1 | AT5G58010 | 50.000 | 76 | 37 | 1 | 170 | 244 | 96 | 171 | 1.88e-14 | 72.4 |
MS.gene063974.t1 | AT2G14760 | 50.746 | 67 | 20 | 1 | 182 | 235 | 246 | 312 | 4.41e-14 | 71.6 |
Find 51 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAGTTGCTGGTTCAGGATT+AGG | 0.247420 | 5.2:-36346486 | MS.gene063974:CDS |
GATTCTGGGTCTATGTAAAT+TGG | 0.284997 | 5.2:+36346744 | None:intergenic |
CCGTTAGATGAAGAAAATTC+AGG | 0.301231 | 5.2:+36347143 | None:intergenic |
GATCGTAATGTTGATCGTTA+TGG | 0.304956 | 5.2:-36346432 | MS.gene063974:CDS |
TGTTGTTGTTGGAACATTAA+TGG | 0.311513 | 5.2:+36346906 | None:intergenic |
AACAGGACAGTTGCTGGTTC+AGG | 0.321831 | 5.2:-36346492 | MS.gene063974:CDS |
CAGTTGCTGGTTCAGGATTA+GGG | 0.322129 | 5.2:-36346485 | MS.gene063974:CDS |
AGAGATTGTGTTTGTGTTTG+TGG | 0.340639 | 5.2:+36346953 | None:intergenic |
TCACTGCAGGAACGTGCTTC+AGG | 0.355705 | 5.2:-36346525 | MS.gene063974:CDS |
TAAGGCTTAGGCAATGAAAC+AGG | 0.373028 | 5.2:+36346459 | None:intergenic |
CTTCAGGAGCCAACAATAAC+AGG | 0.382936 | 5.2:-36346509 | MS.gene063974:CDS |
GAAGACCATGGTATTGGATT+AGG | 0.391268 | 5.2:+36347011 | None:intergenic |
CTCGAATTAGAAAACATTAA+CGG | 0.391592 | 5.2:+36346876 | None:intergenic |
AACAATAACAGGACAGTTGC+TGG | 0.393832 | 5.2:-36346498 | MS.gene063974:CDS |
TGGTGTAGTAGAGTTGTTAT+TGG | 0.394604 | 5.2:+36346926 | None:intergenic |
ATCGTAATGTTGATCGTTAT+GGG | 0.398296 | 5.2:-36346431 | MS.gene063974:intron |
ATGATGAAGATGACTTTAAC+TGG | 0.403724 | 5.2:+36347213 | None:intergenic |
ACGGTGTTGTTTGTTGTTGT+TGG | 0.421243 | 5.2:+36346895 | None:intergenic |
AACGATCAACATTACGATCT+TGG | 0.428866 | 5.2:+36346436 | None:intergenic |
AGCAACTGTCCTGTTATTGT+TGG | 0.439967 | 5.2:+36346500 | None:intergenic |
GACCATGGTATTGGATTAGG+AGG | 0.459342 | 5.2:+36347014 | None:intergenic |
GAAGATGAAGACCATGGTAT+TGG | 0.485579 | 5.2:+36347005 | None:intergenic |
GCTCAGAATACGAACCATTA+CGG | 0.497476 | 5.2:-36346843 | MS.gene063974:CDS |
CGTTAGATGAAGAAAATTCA+GGG | 0.499125 | 5.2:+36347144 | None:intergenic |
GTGTTTGTGGTGGATTGTGA+AGG | 0.504020 | 5.2:+36346966 | None:intergenic |
AATAAGAATACTGCAAAGAA+TGG | 0.517132 | 5.2:-36346631 | MS.gene063974:CDS |
GGTACCAGGTGGAACTAAGA+TGG | 0.521420 | 5.2:-36346610 | MS.gene063974:CDS |
AAACTCGATGGCGGTGATGA+GGG | 0.526683 | 5.2:-36346796 | MS.gene063974:CDS |
TGACGGTGGAAATTGATTGA+TGG | 0.535291 | 5.2:+36347106 | None:intergenic |
GATTGTGTTTGTGTTTGTGG+TGG | 0.537734 | 5.2:+36346956 | None:intergenic |
TTACGATCTTGGTAAGGCTT+AGG | 0.545623 | 5.2:+36346447 | None:intergenic |
GAAACTCGATGGCGGTGATG+AGG | 0.551248 | 5.2:-36346797 | MS.gene063974:CDS |
ATGACAACGCAGTACCGTAA+TGG | 0.563084 | 5.2:+36346829 | None:intergenic |
GATGGATACTGCATCAATGT+TGG | 0.564818 | 5.2:-36346592 | MS.gene063974:CDS |
TGGAAATTGATTGATGGTGT+TGG | 0.574025 | 5.2:+36347112 | None:intergenic |
TCAACATTACGATCTTGGTA+AGG | 0.575828 | 5.2:+36346441 | None:intergenic |
GACACAACTTAAGTCACTGC+AGG | 0.578655 | 5.2:-36346538 | MS.gene063974:CDS |
ATCTGAGAAGAGAAACTCGA+TGG | 0.628015 | 5.2:-36346808 | MS.gene063974:CDS |
GTCATCTTCATCATCATCAG+AGG | 0.630073 | 5.2:-36347204 | MS.gene063974:CDS |
TTATCTATTAAATCTGCAAG+AGG | 0.636966 | 5.2:+36347038 | None:intergenic |
GTATCCATCTTAGTTCCACC+TGG | 0.642640 | 5.2:+36346606 | None:intergenic |
AAGGCTTAGGCAATGAAACA+GGG | 0.655130 | 5.2:+36346460 | None:intergenic |
TCATAGAATTGTTGATCTGA+CGG | 0.657239 | 5.2:+36347089 | None:intergenic |
ACCATGGTATTGGATTAGGA+GGG | 0.660517 | 5.2:+36347015 | None:intergenic |
ATACTGCAAAGAATGGTACC+AGG | 0.680757 | 5.2:-36346624 | MS.gene063974:CDS |
TGAGAAGAGAAACTCGATGG+CGG | 0.681216 | 5.2:-36346805 | MS.gene063974:CDS |
ACCCTCCTAATCCAATACCA+TGG | 0.687624 | 5.2:-36347016 | MS.gene063974:CDS |
TGTCTAGCTGCAATACTCTG+AGG | 0.695596 | 5.2:+36346678 | None:intergenic |
TAGAATTGTTGATCTGACGG+TGG | 0.700773 | 5.2:+36347092 | None:intergenic |
CTGCAAAGAATGGTACCAGG+TGG | 0.704915 | 5.2:-36346621 | MS.gene063974:CDS |
AATGATGAAGATGAAGACCA+TGG | 0.757666 | 5.2:+36346999 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTGTAATTTAAAGATAA+AGG | - | chr5.2:36347045-36347064 | MS.gene063974:CDS | 10.0% |
!! | ACTAATATGTTATCAATAAA+TGG | - | chr5.2:36346851-36346870 | MS.gene063974:CDS | 15.0% |
!! | GTGATAAATTTAATTGATTA+GGG | - | chr5.2:36346616-36346635 | MS.gene063974:CDS | 15.0% |
!!! | AATGTTGATAGAATAAATAA+TGG | - | chr5.2:36347104-36347123 | MS.gene063974:CDS | 15.0% |
!!! | AGAAATTATTACTTTTTTGA+AGG | - | chr5.2:36347128-36347147 | MS.gene063974:CDS | 15.0% |
!!! | TTAAATAGTACTCTATTTTA+AGG | - | chr5.2:36346671-36346690 | MS.gene063974:CDS | 15.0% |
!! | CTAGAATATTTGTCTTAATT+TGG | - | chr5.2:36346712-36346731 | MS.gene063974:CDS | 20.0% |
!! | GGTGATAAATTTAATTGATT+AGG | - | chr5.2:36346615-36346634 | MS.gene063974:CDS | 20.0% |
!!! | ATTTTTGGTGAATTGTATTT+TGG | - | chr5.2:36346945-36346964 | MS.gene063974:CDS | 20.0% |
!!! | GATTAAGAATTTAAGATGAA+TGG | + | chr5.2:36346802-36346821 | None:intergenic | 20.0% |
!!! | TTATTACTTTTTTGAAGGAA+TGG | - | chr5.2:36347133-36347152 | MS.gene063974:CDS | 20.0% |
! | AATAAGAATACTGCAAAGAA+TGG | - | chr5.2:36346394-36346413 | MS.gene063974:intron | 25.0% |
! | ATCTTAAATTCTTAATCCAC+TGG | - | chr5.2:36346805-36346824 | MS.gene063974:CDS | 25.0% |
! | CAGGACAAAATACATAAAAT+TGG | + | chr5.2:36346743-36346762 | None:intergenic | 25.0% |
! | CTCGAATTAGAAAACATTAA+CGG | + | chr5.2:36346152-36346171 | None:intergenic | 25.0% |
! | TGATAACATATTAGTACAAC+TGG | + | chr5.2:36346846-36346865 | None:intergenic | 25.0% |
! | TTATCTATTAAATCTGCAAG+AGG | + | chr5.2:36345990-36346009 | None:intergenic | 25.0% |
!! | ATCTTCACATTTCTTCTTTT+TGG | + | chr5.2:36346317-36346336 | None:intergenic | 25.0% |
!! | GAATATTTGTCTTAATTTGG+TGG | - | chr5.2:36346715-36346734 | MS.gene063974:CDS | 25.0% |
ATCGTAATGTTGATCGTTAT+GGG | - | chr5.2:36346594-36346613 | MS.gene063974:CDS | 30.0% | |
ATGATGAAGATGACTTTAAC+TGG | + | chr5.2:36345815-36345834 | None:intergenic | 30.0% | |
ATTTACACTACGTACAAAAG+AGG | + | chr5.2:36346900-36346919 | None:intergenic | 30.0% | |
CGTTAGATGAAGAAAATTCA+GGG | + | chr5.2:36345884-36345903 | None:intergenic | 30.0% | |
TCATAGAATTGTTGATCTGA+CGG | + | chr5.2:36345939-36345958 | None:intergenic | 30.0% | |
! | CCTGAATTTTCTTCATCTAA+CGG | - | chr5.2:36345882-36345901 | MS.gene063974:intron | 30.0% |
! | TGTTGTTGTTGGAACATTAA+TGG | + | chr5.2:36346122-36346141 | None:intergenic | 30.0% |
! | TTCACATTTCTTCTTTTTGG+TGG | + | chr5.2:36346314-36346333 | None:intergenic | 30.0% |
AACGATCAACATTACGATCT+TGG | + | chr5.2:36346592-36346611 | None:intergenic | 35.0% | |
AATGATGAAGATGAAGACCA+TGG | + | chr5.2:36346029-36346048 | None:intergenic | 35.0% | |
AATTCTTAATCCACTGGATC+TGG | - | chr5.2:36346811-36346830 | MS.gene063974:CDS | 35.0% | |
AGAGATTGTGTTTGTGTTTG+TGG | + | chr5.2:36346075-36346094 | None:intergenic | 35.0% | |
CCGTTAGATGAAGAAAATTC+AGG | + | chr5.2:36345885-36345904 | None:intergenic | 35.0% | |
GATCGTAATGTTGATCGTTA+TGG | - | chr5.2:36346593-36346612 | MS.gene063974:CDS | 35.0% | |
GATTCTGGGTCTATGTAAAT+TGG | + | chr5.2:36346284-36346303 | None:intergenic | 35.0% | |
TAAAATATTGGAGCGAGTGT+GGG | - | chr5.2:36347007-36347026 | MS.gene063974:CDS | 35.0% | |
TCAACATTACGATCTTGGTA+AGG | + | chr5.2:36346587-36346606 | None:intergenic | 35.0% | |
TGGTGTAGTAGAGTTGTTAT+TGG | + | chr5.2:36346102-36346121 | None:intergenic | 35.0% | |
TTAAAATATTGGAGCGAGTG+TGG | - | chr5.2:36347006-36347025 | MS.gene063974:CDS | 35.0% | |
!! | TGGAAATTGATTGATGGTGT+TGG | + | chr5.2:36345916-36345935 | None:intergenic | 35.0% |
!!! | TTGGTGGTTTTACTGATTCT+GGG | + | chr5.2:36346298-36346317 | None:intergenic | 35.0% |
!!! | TTTGGTGGTTTTACTGATTC+TGG | + | chr5.2:36346299-36346318 | None:intergenic | 35.0% |
AACAATAACAGGACAGTTGC+TGG | - | chr5.2:36346527-36346546 | MS.gene063974:CDS | 40.0% | |
AAGGCTTAGGCAATGAAACA+GGG | + | chr5.2:36346568-36346587 | None:intergenic | 40.0% | |
ACACTACGTACAAAAGAGGA+AGG | + | chr5.2:36346896-36346915 | None:intergenic | 40.0% | |
AGCAACTGTCCTGTTATTGT+TGG | + | chr5.2:36346528-36346547 | None:intergenic | 40.0% | |
ATACTGCAAAGAATGGTACC+AGG | - | chr5.2:36346401-36346420 | MS.gene063974:intron | 40.0% | |
ATCTGAGAAGAGAAACTCGA+TGG | - | chr5.2:36346217-36346236 | MS.gene063974:intron | 40.0% | |
GAAGATGAAGACCATGGTAT+TGG | + | chr5.2:36346023-36346042 | None:intergenic | 40.0% | |
GATATCCAAGCATGATGAAC+AGG | + | chr5.2:36346762-36346781 | None:intergenic | 40.0% | |
GATGGATACTGCATCAATGT+TGG | - | chr5.2:36346433-36346452 | MS.gene063974:CDS | 40.0% | |
GATTGTGTTTGTGTTTGTGG+TGG | + | chr5.2:36346072-36346091 | None:intergenic | 40.0% | |
GCTCAGAATACGAACCATTA+CGG | - | chr5.2:36346182-36346201 | MS.gene063974:intron | 40.0% | |
GTCATCTTCATCATCATCAG+AGG | - | chr5.2:36345821-36345840 | MS.gene063974:intron | 40.0% | |
TAAGGCTTAGGCAATGAAAC+AGG | + | chr5.2:36346569-36346588 | None:intergenic | 40.0% | |
TAGAATTGTTGATCTGACGG+TGG | + | chr5.2:36345936-36345955 | None:intergenic | 40.0% | |
TGACGGTGGAAATTGATTGA+TGG | + | chr5.2:36345922-36345941 | None:intergenic | 40.0% | |
TTACGATCTTGGTAAGGCTT+AGG | + | chr5.2:36346581-36346600 | None:intergenic | 40.0% | |
TTTGTCCTGTTCATCATGCT+TGG | - | chr5.2:36346754-36346773 | MS.gene063974:CDS | 40.0% | |
! | ACCATGGTATTGGATTAGGA+GGG | + | chr5.2:36346013-36346032 | None:intergenic | 40.0% |
! | GAAGACCATGGTATTGGATT+AGG | + | chr5.2:36346017-36346036 | None:intergenic | 40.0% |
!! | ACGGTGTTGTTTGTTGTTGT+TGG | + | chr5.2:36346133-36346152 | None:intergenic | 40.0% |
ACCCTCCTAATCCAATACCA+TGG | - | chr5.2:36346009-36346028 | MS.gene063974:intron | 45.0% | |
ATGACAACGCAGTACCGTAA+TGG | + | chr5.2:36346199-36346218 | None:intergenic | 45.0% | |
CTTCAGGAGCCAACAATAAC+AGG | - | chr5.2:36346516-36346535 | MS.gene063974:CDS | 45.0% | |
GAATTTCACACCAGATCCAG+TGG | + | chr5.2:36346824-36346843 | None:intergenic | 45.0% | |
GACACAACTTAAGTCACTGC+AGG | - | chr5.2:36346487-36346506 | MS.gene063974:CDS | 45.0% | |
GTATCCATCTTAGTTCCACC+TGG | + | chr5.2:36346422-36346441 | None:intergenic | 45.0% | |
TGAGAAGAGAAACTCGATGG+CGG | - | chr5.2:36346220-36346239 | MS.gene063974:intron | 45.0% | |
TGTCTAGCTGCAATACTCTG+AGG | + | chr5.2:36346350-36346369 | None:intergenic | 45.0% | |
! | GACCATGGTATTGGATTAGG+AGG | + | chr5.2:36346014-36346033 | None:intergenic | 45.0% |
!! | ACAGTTGCTGGTTCAGGATT+AGG | - | chr5.2:36346539-36346558 | MS.gene063974:CDS | 45.0% |
!! | CAGTTGCTGGTTCAGGATTA+GGG | - | chr5.2:36346540-36346559 | MS.gene063974:CDS | 45.0% |
!! | GTGTTTGTGGTGGATTGTGA+AGG | + | chr5.2:36346062-36346081 | None:intergenic | 45.0% |
!! | AAAAATAAAAAATATGAAAT+TGG | + | chr5.2:36346931-36346950 | None:intergenic | 5.0% |
!!! | AATTTCATATTTTTTATTTT+TGG | - | chr5.2:36346930-36346949 | MS.gene063974:CDS | 5.0% |
!!! | TATTTTCTTAATTAAAATAT+TGG | - | chr5.2:36346995-36347014 | MS.gene063974:CDS | 5.0% |
CTGCAAAGAATGGTACCAGG+TGG | - | chr5.2:36346404-36346423 | MS.gene063974:intron | 50.0% | |
GGTACCAGGTGGAACTAAGA+TGG | - | chr5.2:36346415-36346434 | MS.gene063974:intron | 50.0% | |
! | AAACTCGATGGCGGTGATGA+GGG | - | chr5.2:36346229-36346248 | MS.gene063974:intron | 50.0% |
!! | AACAGGACAGTTGCTGGTTC+AGG | - | chr5.2:36346533-36346552 | MS.gene063974:CDS | 50.0% |
TCACTGCAGGAACGTGCTTC+AGG | - | chr5.2:36346500-36346519 | MS.gene063974:CDS | 55.0% | |
! | GAAACTCGATGGCGGTGATG+AGG | - | chr5.2:36346228-36346247 | MS.gene063974:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 36345801 | 36347246 | 36345801 | ID=MS.gene063974 |
chr5.2 | mRNA | 36345801 | 36347246 | 36345801 | ID=MS.gene063974.t1;Parent=MS.gene063974 |
chr5.2 | exon | 36346432 | 36347246 | 36346432 | ID=MS.gene063974.t1.exon1;Parent=MS.gene063974.t1 |
chr5.2 | CDS | 36346432 | 36347246 | 36346432 | ID=cds.MS.gene063974.t1;Parent=MS.gene063974.t1 |
chr5.2 | exon | 36345801 | 36345804 | 36345801 | ID=MS.gene063974.t1.exon2;Parent=MS.gene063974.t1 |
chr5.2 | CDS | 36345801 | 36345804 | 36345801 | ID=cds.MS.gene063974.t1;Parent=MS.gene063974.t1 |
Gene Sequence |
Protein sequence |