AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064005

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064005.t1 MTR_5g046870 93.651 63 4 0 1 63 1 63 3.74e-38 122
MS.gene064005.t1 MTR_7g016600 87.302 63 8 0 1 63 1 63 2.32e-35 119
MS.gene064005.t1 MTR_6g015975 87.302 63 8 0 1 63 1 63 5.75e-35 118
MS.gene064005.t1 MTR_8g097090 87.302 63 8 0 1 63 1 63 7.02e-35 118
MS.gene064005.t1 MTR_4g109810 86.885 61 8 0 1 61 1 61 3.53e-33 114
MS.gene064005.t1 MTR_8g033270 91.525 59 5 0 1 59 1 59 7.69e-33 113
MS.gene064005.t1 MTR_3g084980 85.714 63 9 0 1 63 1 63 1.01e-32 112
MS.gene064005.t1 MTR_7g075850 86.885 61 8 0 1 61 1 61 1.08e-32 112
MS.gene064005.t1 MTR_3g005530 80.328 61 12 0 1 61 1 61 1.00e-30 107
MS.gene064005.t1 MTR_3g452380 77.049 61 14 0 1 61 16 76 2.04e-30 106
MS.gene064005.t1 MTR_2g017865 78.689 61 13 0 1 61 16 76 2.29e-30 107
MS.gene064005.t1 MTR_2g461710 76.271 59 14 0 1 59 1 59 4.02e-30 100
MS.gene064005.t1 MTR_8g087860 77.049 61 14 0 1 61 17 77 5.85e-30 105
MS.gene064005.t1 MTR_8g033220 75.000 64 16 0 1 64 1 64 1.47e-29 103
MS.gene064005.t1 MTR_8g033220 75.000 64 16 0 1 64 1 64 2.02e-29 103
MS.gene064005.t1 MTR_4g109830 73.438 64 17 0 1 64 1 64 5.17e-29 102
MS.gene064005.t1 MTR_7g075870 71.875 64 18 0 1 64 1 64 2.02e-28 100
MS.gene064005.t1 MTR_7g075870 76.667 60 14 0 1 60 1 60 2.17e-28 100
MS.gene064005.t1 MTR_4g102530 73.770 61 16 0 1 61 1 61 1.15e-27 98.6
MS.gene064005.t1 MTR_1g053070 73.770 61 16 0 1 61 1 61 1.37e-26 97.1
MS.gene064005.t1 MTR_1g101970 74.576 59 15 0 1 59 1 59 1.71e-26 95.5
MS.gene064005.t1 MTR_5g046790 68.750 64 20 0 1 64 1 64 1.75e-26 95.9
MS.gene064005.t1 MTR_8g066260 70.312 64 19 0 1 64 1 64 3.72e-26 95.9
MS.gene064005.t1 MTR_6g464720 77.049 61 14 0 1 61 1 61 4.29e-26 95.9
MS.gene064005.t1 MTR_5g066960 64.407 59 21 0 1 59 1 59 1.73e-25 89.0
MS.gene064005.t1 MTR_0003s0590 70.000 60 18 0 1 60 1 60 2.59e-25 94.0
MS.gene064005.t1 MTR_4g036050 67.797 59 19 0 1 59 1 59 8.64e-25 90.5
MS.gene064005.t1 MTR_4g036050 67.797 59 19 0 1 59 1 59 1.09e-24 90.5
MS.gene064005.t1 MTR_4g036050 67.797 59 19 0 1 59 1 59 1.09e-24 90.5
MS.gene064005.t1 MTR_3g088615 62.295 61 23 0 1 61 1 61 1.27e-24 90.5
MS.gene064005.t1 MTR_4g084740 62.500 64 24 0 1 64 1 64 4.15e-24 92.0
MS.gene064005.t1 MTR_7g016630 65.625 64 22 0 1 64 1 64 7.01e-24 90.1
MS.gene064005.t1 MTR_3g113030 62.295 61 23 0 1 61 1 61 8.88e-24 89.4
MS.gene064005.t1 MTR_1g038300 63.077 65 23 1 1 64 1 65 2.21e-23 88.2
MS.gene064005.t1 MTR_4g036050 67.797 59 19 0 1 59 1 59 4.62e-23 87.0
MS.gene064005.t1 MTR_2g009890 67.797 59 19 0 1 59 1 59 7.47e-23 87.8
MS.gene064005.t1 MTR_4g093030 62.712 59 22 0 1 59 1 59 2.98e-22 83.6
MS.gene064005.t1 MTR_1g029670 57.377 61 26 0 1 61 1 61 3.53e-22 84.0
MS.gene064005.t1 MTR_5g032520 64.407 59 21 0 1 59 1 59 6.33e-22 84.3
MS.gene064005.t1 MTR_5g032150 64.407 59 21 0 1 59 1 59 6.87e-22 84.3
MS.gene064005.t1 MTR_5g031000 59.016 61 25 0 1 61 1 61 1.22e-21 83.6
MS.gene064005.t1 MTR_5g031000 59.016 61 25 0 1 61 1 61 1.31e-21 84.0
MS.gene064005.t1 MTR_5g066180 60.000 60 24 0 1 60 1 60 2.80e-21 82.8
MS.gene064005.t1 MTR_3g102570 66.129 62 20 1 1 62 1 61 3.24e-21 84.0
MS.gene064005.t1 MTR_5g021270 62.712 59 22 0 1 59 1 59 4.43e-21 82.4
MS.gene064005.t1 MTR_5g021270 62.712 59 22 0 1 59 1 59 4.91e-21 82.4
MS.gene064005.t1 MTR_4g093970 52.459 61 29 0 1 61 27 87 2.84e-19 77.8
MS.gene064005.t1 MTR_1g041615 72.727 44 12 0 16 59 20 63 1.27e-18 73.9
MS.gene064005.t1 MTR_2g030740 55.357 56 25 0 2 57 9 64 2.54e-17 72.8
MS.gene064005.t1 MTR_8g079502 54.386 57 26 0 1 57 1 57 6.07e-17 70.5
MS.gene064005.t1 MTR_1g108580 53.571 56 26 0 2 57 9 64 1.07e-16 70.9
MS.gene064005.t1 MTR_1g108510 51.786 56 27 0 2 57 9 64 1.27e-16 70.5
MS.gene064005.t1 MTR_3g030770 51.786 56 27 0 2 57 9 64 1.65e-16 70.5
MS.gene064005.t1 MTR_5g041650 51.613 62 29 1 1 62 38 98 1.78e-16 71.6
MS.gene064005.t1 MTR_1g047550 54.386 57 26 0 1 57 1 57 1.96e-16 69.3
MS.gene064005.t1 MTR_3g052920 55.357 56 25 0 2 57 9 64 2.25e-16 70.1
MS.gene064005.t1 MTR_8g086290 45.455 66 36 0 2 67 12 77 2.57e-16 68.9
MS.gene064005.t1 MTR_2g093190 50.000 56 28 0 2 57 9 64 3.66e-16 69.3
MS.gene064005.t1 MTR_2g105290 52.632 57 27 0 1 57 11 67 9.82e-16 67.4
MS.gene064005.t1 MTR_1g105920 51.786 56 27 0 2 57 9 64 1.07e-15 68.2
MS.gene064005.t1 MTR_3g052870 51.786 56 27 0 2 57 9 64 1.22e-15 67.8
MS.gene064005.t1 MTR_8g051580 49.123 57 29 0 1 57 1 57 1.45e-15 67.0
MS.gene064005.t1 MTR_4g094632 47.541 61 32 0 1 61 1 61 1.64e-15 66.2
MS.gene064005.t1 MTR_1g012570 55.357 56 25 0 2 57 9 64 1.69e-15 67.8
MS.gene064005.t1 MTR_5g045560 54.386 57 26 0 1 57 8 64 1.86e-15 67.8
MS.gene064005.t1 MTR_1g054265 50.877 57 28 0 1 57 1 57 1.97e-15 66.2
MS.gene064005.t1 MTR_1g077360 51.786 56 27 0 2 57 9 64 2.29e-15 67.4
MS.gene064005.t1 MTR_1g063160 49.123 57 29 0 1 57 1 57 2.41e-15 66.2
MS.gene064005.t1 MTR_8g043650 51.786 56 27 0 2 57 9 64 2.80e-15 67.4
MS.gene064005.t1 MTR_1g075600 51.786 56 27 0 2 57 9 64 2.98e-15 67.0
MS.gene064005.t1 MTR_1g105910 51.786 56 27 0 2 57 9 64 3.99e-15 66.6
MS.gene064005.t1 MTR_2g085280 53.571 56 26 0 2 57 9 64 4.47e-15 66.6
MS.gene064005.t1 MTR_2g085250 53.571 56 26 0 2 57 9 64 4.47e-15 66.6
MS.gene064005.t1 MTR_4g131030 50.877 57 28 0 1 57 1 57 7.80e-15 65.9
MS.gene064005.t1 MTR_5g053390 53.571 56 26 0 2 57 9 64 8.63e-15 65.9
MS.gene064005.t1 MTR_0121s0100 48.214 56 29 0 2 57 9 64 1.02e-14 63.5
MS.gene064005.t1 MTR_5g055100 53.571 56 26 0 2 57 9 64 1.94e-14 65.1
MS.gene064005.t1 MTR_4g108720 50.943 53 26 0 1 53 1 53 3.42e-14 65.1
MS.gene064005.t1 MTR_1g106070 48.214 56 29 0 2 57 9 64 3.63e-14 63.5
MS.gene064005.t1 MTR_4g094638 47.458 59 31 0 1 59 1 59 4.08e-14 63.2
MS.gene064005.t1 MTR_7g028448 62.222 45 15 1 16 60 26 68 2.57e-13 60.8
MS.gene064005.t1 MTR_4g036915 62.222 45 15 1 16 60 26 68 2.57e-13 60.8
MS.gene064005.t1 MTR_0121s0080 48.276 58 28 1 2 57 7 64 3.90e-13 61.6
MS.gene064005.t1 MTR_3g030780 44.643 56 31 0 2 57 9 64 1.17e-12 58.5
MS.gene064005.t1 MTR_8g046350 43.860 57 32 0 1 57 1 57 2.08e-12 58.5
MS.gene064005.t1 MTR_3g080940 43.860 57 32 0 1 57 8 64 3.83e-12 58.5
MS.gene064005.t1 MTR_6g018920 42.857 49 28 0 1 49 1 49 2.28e-11 57.4
MS.gene064005.t1 MTR_6g005440 42.857 49 28 0 1 49 1 49 5.19e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064005.t1 AT2G03710 88.525 61 7 0 1 61 1 61 2.43e-35 117
MS.gene064005.t1 AT1G24260 87.302 63 8 0 1 63 1 63 5.79e-35 118
MS.gene064005.t1 AT1G24260 87.302 63 8 0 1 63 1 63 6.87e-35 118
MS.gene064005.t1 AT1G24260 87.302 63 8 0 1 63 1 63 7.24e-35 118
MS.gene064005.t1 AT5G15800 87.302 63 8 0 1 63 1 63 8.90e-35 118
MS.gene064005.t1 AT5G15800 87.302 63 8 0 1 63 1 63 2.01e-34 117
MS.gene064005.t1 AT3G02310 84.127 63 10 0 1 63 1 63 7.94e-34 114
MS.gene064005.t1 AT2G03710 91.525 59 5 0 1 59 1 59 5.74e-33 113
MS.gene064005.t1 AT2G03710 91.525 59 5 0 1 59 1 59 5.86e-33 113
MS.gene064005.t1 AT3G02310 84.127 63 10 0 1 63 1 63 1.35e-32 112
MS.gene064005.t1 AT2G45650 89.831 59 6 0 1 59 1 59 2.10e-32 112
MS.gene064005.t1 AT4G09960 80.000 60 12 0 1 60 1 60 5.95e-31 107
MS.gene064005.t1 AT4G09960 80.000 60 12 0 1 60 1 60 7.03e-31 107
MS.gene064005.t1 AT4G09960 80.000 60 12 0 1 60 2 61 7.67e-31 107
MS.gene064005.t1 AT4G09960 80.000 60 12 0 1 60 11 70 9.01e-31 107
MS.gene064005.t1 AT4G09960 80.000 60 12 0 1 60 27 86 1.84e-30 107
MS.gene064005.t1 AT4G18960 80.000 60 12 0 2 61 18 77 2.46e-30 106
MS.gene064005.t1 AT4G09960 80.000 60 12 0 1 60 96 155 5.37e-30 107
MS.gene064005.t1 AT3G58780 77.049 61 14 0 1 61 16 76 5.39e-30 105
MS.gene064005.t1 AT2G42830 77.049 61 14 0 1 61 16 76 5.93e-30 105
MS.gene064005.t1 AT2G42830 77.049 61 14 0 1 61 16 76 6.54e-30 105
MS.gene064005.t1 AT3G58780 77.049 61 14 0 1 61 22 82 6.74e-30 105
MS.gene064005.t1 AT3G58780 79.661 59 12 0 1 59 16 74 7.35e-30 105
MS.gene064005.t1 AT3G58780 77.049 61 14 0 1 61 16 76 9.01e-30 105
MS.gene064005.t1 AT3G58780 77.049 61 14 0 1 61 16 76 9.67e-30 105
MS.gene064005.t1 AT5G60910 71.875 64 18 0 1 64 1 64 2.25e-29 103
MS.gene064005.t1 AT4G11880 74.603 63 16 0 1 63 1 63 4.94e-29 101
MS.gene064005.t1 AT4G11880 74.603 63 16 0 1 63 1 63 4.94e-29 101
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 7.50e-29 99.0
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 7.51e-29 100
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 7.51e-29 100
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 7.51e-29 100
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 8.40e-29 100
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 8.40e-29 100
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 8.40e-29 100
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 8.40e-29 100
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 8.40e-29 100
MS.gene064005.t1 AT4G11880 74.603 63 16 0 1 63 1 63 8.91e-29 102
MS.gene064005.t1 AT4G11880 74.603 63 16 0 1 63 1 63 8.91e-29 102
MS.gene064005.t1 AT3G61120 79.661 59 12 0 1 59 1 59 2.74e-28 101
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 3.55e-28 99.8
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 3.55e-28 99.8
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 3.81e-28 100
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 3.81e-28 100
MS.gene064005.t1 AT5G62165 75.000 60 15 0 1 60 1 60 3.81e-28 100
MS.gene064005.t1 AT1G69120 68.750 64 20 0 1 64 1 64 6.12e-28 100
MS.gene064005.t1 AT4G22950 73.770 61 16 0 1 61 1 61 6.97e-28 98.6
MS.gene064005.t1 AT2G45660 73.333 60 16 0 1 60 1 60 1.14e-27 97.4
MS.gene064005.t1 AT4G22950 73.770 61 16 0 1 61 1 61 1.90e-27 98.6
MS.gene064005.t1 AT4G22950 73.770 61 16 0 1 61 1 61 1.90e-27 98.6
MS.gene064005.t1 AT2G45660 73.333 60 16 0 1 60 1 60 5.55e-27 97.4
MS.gene064005.t1 AT3G57230 68.852 61 19 0 1 61 1 61 1.71e-26 94.4
MS.gene064005.t1 AT3G57230 68.852 61 19 0 1 61 1 61 5.31e-26 95.5
MS.gene064005.t1 AT3G57230 68.852 61 19 0 1 61 1 61 5.31e-26 95.5
MS.gene064005.t1 AT3G57390 71.186 59 17 0 1 59 1 59 9.11e-26 94.4
MS.gene064005.t1 AT3G30260 67.188 64 21 0 1 64 1 64 1.10e-25 94.7
MS.gene064005.t1 AT1G26310 71.875 64 18 0 1 64 1 64 1.32e-25 94.7
MS.gene064005.t1 AT3G57390 71.186 59 17 0 1 59 1 59 1.97e-25 94.4
MS.gene064005.t1 AT1G69120 68.750 64 20 0 1 64 1 64 2.02e-25 93.6
MS.gene064005.t1 AT5G13790 71.186 59 17 0 1 59 1 59 4.58e-25 93.6
MS.gene064005.t1 AT5G13790 71.186 59 17 0 1 59 1 59 5.03e-25 93.6
MS.gene064005.t1 AT5G10140 65.079 63 22 0 1 63 1 63 6.65e-25 91.3
MS.gene064005.t1 AT5G10140 65.079 63 22 0 1 63 1 63 7.40e-25 91.3
MS.gene064005.t1 AT5G10140 65.079 63 22 0 1 63 1 63 7.63e-25 90.5
MS.gene064005.t1 AT5G51860 68.333 60 19 0 1 60 1 60 7.93e-25 91.3
MS.gene064005.t1 AT5G51860 68.333 60 19 0 1 60 1 60 1.04e-24 91.3
MS.gene064005.t1 AT5G10140 65.079 63 22 0 1 63 1 63 1.30e-24 90.5
MS.gene064005.t1 AT5G20240 67.241 58 19 0 1 58 1 58 2.44e-24 89.0
MS.gene064005.t1 AT1G22130 65.625 64 22 0 1 64 1 64 3.15e-24 92.4
MS.gene064005.t1 AT2G14210 61.905 63 24 0 1 63 1 63 3.37e-24 90.5
MS.gene064005.t1 AT5G65070 67.742 62 20 0 1 62 1 62 4.66e-24 90.1
MS.gene064005.t1 AT5G65070 68.333 60 19 0 1 60 1 60 4.88e-24 87.8
MS.gene064005.t1 AT2G14210 59.091 66 27 0 1 66 1 66 5.05e-24 90.1
MS.gene064005.t1 AT5G65070 65.079 63 22 0 1 63 1 63 6.69e-24 89.0
MS.gene064005.t1 AT1G71692 60.938 64 25 0 1 64 1 64 7.12e-24 89.4
MS.gene064005.t1 AT5G51870 65.000 60 21 0 1 60 1 60 8.12e-24 88.2
MS.gene064005.t1 AT1G77980 64.062 64 23 0 1 64 1 64 9.15e-24 91.3
MS.gene064005.t1 AT4G37940 62.295 61 23 0 1 61 1 61 1.30e-23 87.8
MS.gene064005.t1 AT5G65070 68.333 60 19 0 1 60 1 60 1.48e-23 88.2
MS.gene064005.t1 AT2G22540 60.606 66 26 0 1 66 1 66 1.61e-23 89.0
MS.gene064005.t1 AT2G22540 60.606 66 26 0 1 66 1 66 1.61e-23 89.0
MS.gene064005.t1 AT5G23260 64.407 59 21 0 1 59 1 59 1.73e-23 89.0
MS.gene064005.t1 AT5G65070 68.333 60 19 0 1 60 1 60 1.76e-23 88.6
MS.gene064005.t1 AT5G51870 65.000 60 21 0 1 60 1 60 1.84e-23 88.2
MS.gene064005.t1 AT5G51870 65.000 60 21 0 1 60 24 83 2.11e-23 87.4
MS.gene064005.t1 AT5G51870 65.000 60 21 0 1 60 1 60 3.00e-23 87.8
MS.gene064005.t1 AT5G51870 65.000 60 21 0 1 60 11 70 4.33e-23 87.4
MS.gene064005.t1 AT5G23260 64.407 59 21 0 1 59 1 59 4.53e-23 88.2
MS.gene064005.t1 AT5G23260 64.407 59 21 0 1 59 17 75 1.33e-22 87.0
MS.gene064005.t1 AT5G23260 64.407 59 21 0 1 59 17 75 1.48e-22 87.0
MS.gene064005.t1 AT5G20240 67.241 58 19 0 1 58 1 58 5.17e-22 84.3
MS.gene064005.t1 AT3G54340 62.712 59 22 0 1 59 1 59 7.58e-22 84.3
MS.gene064005.t1 AT5G65050 55.556 63 28 0 1 63 1 63 1.33e-21 82.4
MS.gene064005.t1 AT2G22630 54.286 70 29 1 1 67 1 70 2.62e-21 82.8
MS.gene064005.t1 AT2G22630 54.286 70 29 1 1 67 1 70 2.62e-21 82.8
MS.gene064005.t1 AT5G65050 55.556 63 28 0 1 63 1 63 3.76e-21 81.6
MS.gene064005.t1 AT5G65050 55.556 63 28 0 1 63 1 63 4.01e-21 81.6
MS.gene064005.t1 AT4G37940 62.295 61 23 0 1 61 1 61 4.04e-21 82.0
MS.gene064005.t1 AT5G65050 55.556 63 28 0 1 63 1 63 4.16e-21 81.6
MS.gene064005.t1 AT5G65080 61.905 63 24 0 1 63 8 70 5.21e-21 81.6
MS.gene064005.t1 AT4G37940 62.295 61 23 0 1 61 1 61 5.99e-21 82.0
MS.gene064005.t1 AT4G24540 63.333 60 22 0 1 60 1 60 8.38e-21 81.6
MS.gene064005.t1 AT5G65080 60.317 63 25 0 1 63 8 70 1.58e-20 80.1
MS.gene064005.t1 AT1G31140 62.295 61 23 0 1 61 1 61 5.22e-20 79.3
MS.gene064005.t1 AT1G31140 62.295 61 23 0 1 61 1 61 5.97e-20 79.0
MS.gene064005.t1 AT5G65060 53.968 63 29 0 1 63 1 63 8.01e-20 78.2
MS.gene064005.t1 AT5G65060 53.968 63 29 0 1 63 1 63 8.33e-20 78.2
MS.gene064005.t1 AT5G65060 53.968 63 29 0 1 63 1 63 9.04e-20 78.2
MS.gene064005.t1 AT2G22540 61.404 57 22 0 1 57 1 57 1.09e-19 79.0
MS.gene064005.t1 AT1G77950 59.375 64 26 0 1 64 1 64 1.80e-19 78.6
MS.gene064005.t1 AT1G77950 59.375 64 26 0 1 64 1 64 1.80e-19 78.6
MS.gene064005.t1 AT1G77950 59.375 64 26 0 1 64 1 64 1.80e-19 78.6
MS.gene064005.t1 AT1G77950 59.375 64 26 0 1 64 1 64 1.80e-19 78.6
MS.gene064005.t1 AT4G37435 54.688 64 29 0 1 64 1 64 6.76e-19 75.9
MS.gene064005.t1 AT1G77080 56.250 64 28 0 1 64 1 64 9.72e-18 72.0
MS.gene064005.t1 AT1G77080 56.250 64 28 0 1 64 1 64 2.35e-17 72.0
MS.gene064005.t1 AT1G18750 56.140 57 25 0 1 57 1 57 2.52e-17 73.9
MS.gene064005.t1 AT1G18750 56.140 57 25 0 1 57 1 57 2.64e-17 73.9
MS.gene064005.t1 AT1G18750 56.140 57 25 0 1 57 1 57 2.86e-17 73.9
MS.gene064005.t1 AT2G03060 54.839 62 27 1 1 62 1 61 3.21e-17 73.9
MS.gene064005.t1 AT2G03060 54.839 62 27 1 1 62 1 61 3.21e-17 73.9
MS.gene064005.t1 AT2G03060 54.839 62 27 1 1 62 1 61 3.21e-17 73.9
MS.gene064005.t1 AT1G77080 58.333 60 25 0 1 60 1 60 5.19e-17 70.9
MS.gene064005.t1 AT2G03060 54.839 62 27 1 1 62 1 61 5.20e-17 73.2
MS.gene064005.t1 AT1G77080 58.333 60 25 0 1 60 1 60 6.26e-17 70.5
MS.gene064005.t1 AT1G77080 58.333 60 25 0 1 60 1 60 1.10e-16 70.1
MS.gene064005.t1 AT1G77080 58.333 60 25 0 1 60 1 60 2.25e-16 70.1
MS.gene064005.t1 AT1G01530 54.386 57 26 0 1 57 6 62 3.40e-16 69.7
MS.gene064005.t1 AT5G60440 50.000 56 28 0 2 57 7 62 2.78e-14 65.1
MS.gene064005.t1 AT4G36590 48.485 66 34 0 2 67 7 72 2.81e-14 64.7
MS.gene064005.t1 AT1G72350 55.357 56 25 0 2 57 43 98 3.20e-14 64.3
MS.gene064005.t1 AT1G65360 47.368 57 30 0 1 57 6 62 3.42e-14 64.3
MS.gene064005.t1 AT3G66656 45.614 57 31 0 1 57 1 57 3.80e-14 63.2
MS.gene064005.t1 AT1G69540 50.943 53 26 0 1 53 1 53 5.59e-14 64.7
MS.gene064005.t1 AT1G69540 50.943 53 26 0 1 53 1 53 6.31e-14 64.7
MS.gene064005.t1 AT2G34440 43.860 57 32 0 1 57 1 57 1.10e-13 62.0
MS.gene064005.t1 AT3G04100 43.333 60 34 0 2 61 14 73 2.61e-13 61.6
MS.gene064005.t1 AT1G47760 47.368 57 30 0 1 57 1 57 5.02e-13 60.5
MS.gene064005.t1 AT2G24840 45.614 57 31 0 1 57 62 118 4.63e-12 58.9
MS.gene064005.t1 AT1G29962 45.000 60 33 0 2 61 8 67 1.39e-11 56.6
MS.gene064005.t1 AT1G28460 46.667 60 32 0 2 61 8 67 1.51e-11 56.6
MS.gene064005.t1 AT2G26320 41.935 62 36 0 1 62 17 78 3.75e-11 53.9
MS.gene064005.t1 AT5G26580 48.980 49 25 0 1 49 1 49 5.15e-11 56.2

Find 12 sgRNAs with CRISPR-Local

Find 15 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTTGCAAAGAGAAGAAA+TGG 0.365480 5.2:+37207148 MS.gene064005:CDS
AAGCAATAAAATAATGGGTA+GGG 0.438614 5.2:+37207078 None:intergenic
GGGGAAAGGTAGAGCTGAAG+AGG 0.468273 5.2:+37207098 MS.gene064005:CDS
ATGAGTTCTGCAGTGGCACT+AGG 0.499533 5.2:+37207254 MS.gene064005:CDS
AAAGCAATAAAATAATGGGT+AGG 0.518687 5.2:+37207077 None:intergenic
TAAAATAATGGGTAGGGGAA+AGG 0.519037 5.2:+37207084 None:intergenic
CTCTGTACTTTGTGATGCTG+AGG 0.529875 5.2:+37207195 MS.gene064005:CDS
AGCAATAAAATAATGGGTAG+GGG 0.548277 5.2:+37207079 None:intergenic
AAGAAATGGGATGCTCAAGA+AGG 0.586753 5.2:+37207162 MS.gene064005:CDS
CATTTGCAAAGAGAAGAAAT+GGG 0.608010 5.2:+37207149 MS.gene064005:CDS
AGGCTCTATGAGTTCTGCAG+TGG 0.641732 5.2:+37207247 MS.gene064005:CDS
AGAACTCATAGAGCCTTCCA+CGG 0.683256 5.2:-37207240 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTGATACTAATTATTT+TGG + chr5.2:37207331-37207350 MS.gene064005:intron 15.0%
!!! TCTTTGATACTAATTATTTT+GGG + chr5.2:37207332-37207351 MS.gene064005:intron 15.0%
!!! GGGATCTTTTTTTTTTTTCT+GGG + chr5.2:37207352-37207371 MS.gene064005:intron 25.0%
!!! TGGGATCTTTTTTTTTTTTC+TGG + chr5.2:37207351-37207370 MS.gene064005:intron 25.0%
ACATTTGCAAAGAGAAGAAA+TGG + chr5.2:37207148-37207167 MS.gene064005:CDS 30.0%
CATTTGCAAAGAGAAGAAAT+GGG + chr5.2:37207149-37207168 MS.gene064005:CDS 30.0%
!!! CTTTTTTTTTTTTCTGGGTC+AGG + chr5.2:37207357-37207376 MS.gene064005:intron 30.0%
AAGAAATGGGATGCTCAAGA+AGG + chr5.2:37207162-37207181 MS.gene064005:CDS 40.0%
! CTCATTATTTTCTCTAGCCG+TGG + chr5.2:37207223-37207242 MS.gene064005:CDS 40.0%
! TTATTTTCTCTAGCCGTGGA+AGG + chr5.2:37207227-37207246 MS.gene064005:CDS 40.0%
AGAACTCATAGAGCCTTCCA+CGG - chr5.2:37207243-37207262 None:intergenic 45.0%
CTCTGTACTTTGTGATGCTG+AGG + chr5.2:37207195-37207214 MS.gene064005:CDS 45.0%
AGGCTCTATGAGTTCTGCAG+TGG + chr5.2:37207247-37207266 MS.gene064005:CDS 50.0%
ATGAGTTCTGCAGTGGCACT+AGG + chr5.2:37207254-37207273 MS.gene064005:CDS 50.0%
GGGGAAAGGTAGAGCTGAAG+AGG + chr5.2:37207098-37207117 MS.gene064005:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 37207091 37207397 37207091 ID=MS.gene064005
chr5.2 mRNA 37207091 37207397 37207091 ID=MS.gene064005.t1;Parent=MS.gene064005
chr5.2 exon 37207091 37207275 37207091 ID=MS.gene064005.t1.exon1;Parent=MS.gene064005.t1
chr5.2 CDS 37207091 37207275 37207091 ID=cds.MS.gene064005.t1;Parent=MS.gene064005.t1
chr5.2 exon 37207379 37207397 37207379 ID=MS.gene064005.t1.exon2;Parent=MS.gene064005.t1
chr5.2 CDS 37207379 37207397 37207379 ID=cds.MS.gene064005.t1;Parent=MS.gene064005.t1
Gene Sequence

>MS.gene064005

ATGGGTAGGGGAAAGGTAGAGCTGAAGAGGATTGAGAACAAAATAAATCGTCAAGTTACATTTGCAAAGAGAAGAAATGGGATGCTCAAGAAGGCTTATGAACTCTCTGTACTTTGTGATGCTGAGGTTGCTCTCATTATTTTCTCTAGCCGTGGAAGGCTCTATGAGTTCTGCAGTGGCACTAGGTACATGAATCTTGTTATTTTATTTTATTTTTTGAATTATTCTCTTGTGTGACAAATCTTTGATACTAATTATTTTGGGATCTTTTTTTTTTTTCTGGGTCAGGCTTGAGTTGTTTAATTGA
Protein sequence

>MS.gene064005.t1

MGRGKVELKRIENKINRQVTFAKRRNGMLKKAYELSVLCDAEVALIIFSSRGRLYEFCSGTRLELFN