AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064023

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064023.t1 MTR_0558s0020 86.824 296 38 1 1 295 1 296 0.0 543
MS.gene064023.t1 MTR_1g083640 82.394 284 34 1 1 268 1 284 6.43e-172 493
MS.gene064023.t1 MTR_8g446020 73.220 295 40 1 1 295 1 256 6.51e-152 440
MS.gene064023.t1 MTR_6g090505 83.544 237 39 0 65 301 1 237 3.67e-143 422
MS.gene064023.t1 MTR_6g090505 67.647 102 6 2 396 495 230 306 3.75e-34 134
MS.gene064023.t1 MTR_6g090505 77.551 49 11 0 567 615 314 362 7.12e-12 68.2
MS.gene064023.t1 MTR_2g014100 81.633 245 36 1 1 236 1 245 1.01e-141 414
MS.gene064023.t1 MTR_0337s0040 71.923 260 33 2 1 259 1 221 2.50e-124 369
MS.gene064023.t1 MTR_3g008240 84.236 203 31 1 1 202 1 203 5.44e-119 354
MS.gene064023.t1 MTR_4g040430 83.663 202 29 1 1 202 1 198 1.30e-118 353
MS.gene064023.t1 MTR_5g071590 73.333 180 35 2 1 167 1 180 3.20e-90 279
MS.gene064023.t1 MTR_0337s0060 61.441 236 17 2 447 682 21 182 6.22e-87 272
MS.gene064023.t1 MTR_1g055240 87.324 142 18 0 91 232 3 144 8.24e-87 269
MS.gene064023.t1 MTR_0019s0290 81.579 152 28 0 82 233 9 160 4.53e-86 267
MS.gene064023.t1 MTR_1281s0010 80.734 109 21 0 19 127 1 109 1.04e-56 188
MS.gene064023.t1 MTR_4g133495 72.072 111 28 1 576 683 88 198 5.71e-48 170
MS.gene064023.t1 MTR_4g133340 72.072 111 28 1 576 683 88 198 5.71e-48 170
MS.gene064023.t1 MTR_6g051425 31.761 318 186 6 40 341 22 324 1.01e-37 144
MS.gene064023.t1 MTR_4g008820 70.000 100 29 1 1 99 125 224 1.00e-31 131
MS.gene064023.t1 MTR_8g046060 77.273 88 11 2 1 79 91 178 2.99e-31 122
MS.gene064023.t1 MTR_3g028680 81.818 66 12 0 618 683 1 66 4.02e-30 117
MS.gene064023.t1 MTR_2g067090 80.952 63 12 0 621 683 99 161 7.17e-27 111
MS.gene064023.t1 MTR_1g070355 26.235 324 218 6 41 362 80 384 4.20e-18 88.6
MS.gene064023.t1 MTR_0402s0040 25.405 185 119 4 49 233 40 205 2.36e-14 76.6
MS.gene064023.t1 MTR_0337s0050 72.222 36 10 0 259 294 14 49 1.09e-12 64.3
MS.gene064023.t1 MTR_4g035820 22.414 290 192 7 17 299 61 324 1.10e-12 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064023.t1 AT4G38180 27.457 641 385 13 32 665 70 637 1.48e-70 245
MS.gene064023.t1 AT4G15090 25.484 620 385 13 50 665 66 612 2.29e-54 200
MS.gene064023.t1 AT4G15090 25.484 620 385 13 50 665 66 612 2.29e-54 200
MS.gene064023.t1 AT4G15090 25.484 620 385 13 50 665 66 612 2.29e-54 200
MS.gene064023.t1 AT4G15090 25.484 620 385 13 50 665 66 612 2.29e-54 200
MS.gene064023.t1 AT4G15090 25.484 620 385 13 50 665 66 612 2.29e-54 200
MS.gene064023.t1 AT3G06250 24.961 633 352 16 34 661 189 703 3.57e-51 190
MS.gene064023.t1 AT3G06250 24.961 633 352 16 34 661 189 703 3.57e-51 190
MS.gene064023.t1 AT3G06250 24.961 633 352 16 34 661 189 703 3.57e-51 190
MS.gene064023.t1 AT1G76320 25.363 619 370 17 50 662 12 544 1.07e-48 182
MS.gene064023.t1 AT2G27110 26.103 544 330 13 127 666 108 583 1.13e-48 184
MS.gene064023.t1 AT2G27110 26.103 544 330 13 127 666 108 583 1.13e-48 184
MS.gene064023.t1 AT2G27110 27.193 456 277 9 213 666 36 438 2.55e-48 181
MS.gene064023.t1 AT1G76320 25.363 619 370 17 50 662 12 544 4.32e-48 181
MS.gene064023.t1 AT1G76320 25.363 619 370 17 50 662 12 544 4.32e-48 181
MS.gene064023.t1 AT1G76320 25.363 619 370 17 50 662 12 544 4.53e-48 181
MS.gene064023.t1 AT3G22170 22.871 634 400 14 34 662 69 618 2.49e-47 180
MS.gene064023.t1 AT3G22170 22.871 634 400 14 34 662 69 618 2.49e-47 180
MS.gene064023.t1 AT5G18960 23.411 645 370 16 24 661 200 727 6.56e-46 175
MS.gene064023.t1 AT5G18960 23.411 645 370 16 24 661 200 727 6.56e-46 175
MS.gene064023.t1 AT4G38170 24.362 431 268 8 235 662 24 399 9.92e-44 166
MS.gene064023.t1 AT1G10240 24.880 623 376 19 49 659 62 604 1.05e-42 164
MS.gene064023.t1 AT1G10240 24.880 623 376 19 49 659 62 604 1.05e-42 164
MS.gene064023.t1 AT5G28530 24.257 639 387 17 40 660 60 619 1.57e-42 164
MS.gene064023.t1 AT5G28530 24.100 639 384 18 40 660 60 615 1.15e-41 161
MS.gene064023.t1 AT5G28530 24.100 639 384 18 40 660 60 615 1.15e-41 161
MS.gene064023.t1 AT2G32250 23.903 661 378 19 4 659 10 550 1.46e-38 153
MS.gene064023.t1 AT2G32250 23.903 661 378 19 4 659 10 550 2.35e-38 152
MS.gene064023.t1 AT2G32250 23.903 661 378 19 4 659 10 550 2.35e-38 152
MS.gene064023.t1 AT2G32250 23.903 661 378 19 4 659 10 550 2.35e-38 152
MS.gene064023.t1 AT2G32250 23.903 661 378 19 4 659 10 550 2.44e-38 152
MS.gene064023.t1 AT2G32250 23.903 661 378 19 4 659 10 550 2.44e-38 152
MS.gene064023.t1 AT2G32250 23.917 623 352 17 50 667 12 517 1.22e-37 150
MS.gene064023.t1 AT2G32250 23.902 615 346 17 50 659 12 509 1.81e-37 150
MS.gene064023.t1 AT1G80010 24.043 653 373 24 41 662 101 661 2.65e-36 146
MS.gene064023.t1 AT1G52520 22.311 623 408 15 41 662 91 638 9.85e-34 138
MS.gene064023.t1 AT4G19990 28.358 268 185 4 219 483 106 369 5.42e-27 117
MS.gene064023.t1 AT4G19990 28.358 268 185 4 219 483 177 440 5.54e-27 117
MS.gene064023.t1 AT4G19990 28.358 268 185 4 219 483 163 426 7.31e-27 117
MS.gene064023.t1 AT4G19990 28.358 268 185 4 219 483 163 426 7.59e-27 117
MS.gene064023.t1 AT4G19990 28.358 268 185 4 219 483 163 426 7.59e-27 117
MS.gene064023.t1 AT4G19990 28.358 268 185 4 219 483 163 426 7.86e-27 117
MS.gene064023.t1 AT4G19990 28.358 268 185 4 219 483 163 426 7.86e-27 117
MS.gene064023.t1 AT5G28530 22.099 629 350 20 40 660 60 556 4.31e-24 107
MS.gene064023.t1 AT5G28530 21.940 629 347 21 40 660 60 552 2.58e-23 105

Find 98 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGCTGAGTTGGACTTTA+AGG 0.133287 6.1:-79160180 MS.gene064023:CDS
TTTCGATGAGTTAACTAATT+TGG 0.156761 6.1:-79160489 MS.gene064023:CDS
CTTTAGTCATTTCAACATTA+TGG 0.194287 6.1:-79160222 MS.gene064023:CDS
CAACAAGATTATGCTCTATT+TGG 0.198611 6.1:-79161273 MS.gene064023:CDS
TTCATTTCAGCTGCCTTTCT+TGG 0.201003 6.1:-79160770 MS.gene064023:intron
CATCGTAAGAGTGTGTTATT+TGG 0.276792 6.1:-79160737 MS.gene064023:CDS
TATGGTTTGAGGTTTCTTAT+TGG 0.280533 6.1:+79160643 None:intergenic
AATCAGATTTCGACTACAAT+TGG 0.318540 6.1:-79160448 MS.gene064023:CDS
GCCGATATTTATTGTTTGTT+CGG 0.341758 6.1:+79161223 None:intergenic
GGTTTCGAATGTTGATGTTT+TGG 0.354913 6.1:-79159925 MS.gene064023:CDS
ACTAGCCTGGTCTGTGTATA+TGG 0.360230 6.1:+79160625 None:intergenic
TATGCATTGGTCTTCAGTTT+GGG 0.370760 6.1:-79160348 MS.gene064023:CDS
AACAATAAATATCGGCCATT+AGG 0.388497 6.1:-79161216 MS.gene064023:intron
ACCGAACAAACAATAAATAT+CGG 0.389395 6.1:-79161224 MS.gene064023:CDS
GTATGCATTGGTCTTCAGTT+TGG 0.392120 6.1:-79160349 MS.gene064023:CDS
GTCTTTAGTGCCAACATTCA+TGG 0.395146 6.1:+79159632 None:intergenic
TTCTCATACTCAACAAGAAC+TGG 0.395633 6.1:+79161753 None:intergenic
TTCCTTCAAATACTATTATG+AGG 0.399583 6.1:-79160048 MS.gene064023:CDS
TAAAGAATCATGGAAGTCTT+TGG 0.408500 6.1:-79161982 MS.gene064023:CDS
CATGTCGTATGTTTGAGAAC+CGG 0.411671 6.1:-79159800 MS.gene064023:CDS
GATTATGATCTTCAAACCTT+GGG 0.413114 6.1:+79159877 None:intergenic
ATAACACTGGATTCTCTGTT+AGG 0.417808 6.1:-79161911 MS.gene064023:CDS
GGGTTGTCACAGTCGACATT+AGG 0.419786 6.1:-79159842 MS.gene064023:CDS
CGATTATGATCTTCAAACCT+TGG 0.425681 6.1:+79159876 None:intergenic
CGAGAAGTAAATGAAGTTCA+AGG 0.430014 6.1:-79161576 MS.gene064023:CDS
AGCTGGAATATATTTGAAGT+TGG 0.433136 6.1:-79161694 MS.gene064023:CDS
TGGTCTGTGTATATGGTTTG+AGG 0.447350 6.1:+79160632 None:intergenic
GAAAGGGTTGGTTGTAAAGC+TGG 0.447509 6.1:-79161711 MS.gene064023:CDS
CGCTTTAAAACATATTGTGC+AGG 0.447633 6.1:+79159699 None:intergenic
CGTTATGCTTGTAACAAAGA+AGG 0.449439 6.1:-79161828 MS.gene064023:CDS
GCTTTAATAAATTCTAAAGC+TGG 0.450264 6.1:-79161546 MS.gene064023:CDS
ATCTGAGAGTGGACAATTGA+CGG 0.452529 6.1:-79162057 MS.gene064023:CDS
TGGTCTTTGCTCATGGCACA+TGG 0.452802 6.1:-79160558 MS.gene064023:CDS
GGCCTACTTCGGACTTTAAG+TGG 0.458978 6.1:-79160394 MS.gene064023:CDS
ATGTCGTATGTTTGAGAACC+GGG 0.461344 6.1:-79159799 MS.gene064023:CDS
ACAAAATAAGAAATCGGATA+AGG 0.462147 6.1:-79161862 MS.gene064023:CDS
GAAGTGATGGGTCAAGGAGT+TGG 0.484292 6.1:-79161501 MS.gene064023:CDS
CTCCTCATAATAGTATTTGA+AGG 0.485089 6.1:+79160046 None:intergenic
TTACAACCAACCCTTTCCTC+TGG 0.485330 6.1:+79161717 None:intergenic
TTTAATTATGCATATAACAC+TGG 0.485542 6.1:-79161924 MS.gene064023:CDS
TCTAATGACAACTCGTCAAA+AGG 0.488137 6.1:-79161433 MS.gene064023:CDS
CTCAAGTAGCACAAATGCTC+TGG 0.489977 6.1:+79161606 None:intergenic
CAATTCACAAAATAAGAAAT+CGG 0.490263 6.1:-79161868 MS.gene064023:CDS
TATGAGGAGGACACAACAAA+AGG 0.490908 6.1:-79160032 MS.gene064023:CDS
ATGATTGTCAAAACCAAGAA+AGG 0.491378 6.1:+79160757 None:intergenic
ATCAGATTTCGACTACAATT+GGG 0.491708 6.1:-79160447 MS.gene064023:CDS
CGTCAAAAGGAGATGGTGGC+TGG 0.492100 6.1:-79161420 MS.gene064023:CDS
ACATTATGGTTCAGAGAATG+AGG 0.494022 6.1:-79160208 MS.gene064023:CDS
GACCGCATAAGCTGACTGTT+GGG 0.496307 6.1:+79160128 None:intergenic
GAGAACATCTTATGAAGTGA+TGG 0.499875 6.1:-79161514 MS.gene064023:CDS
TGTCTTCTGCAGCATCAACT+TGG 0.502977 6.1:+79161328 None:intergenic
AAATGCTCTGGTTTATGTAA+TGG 0.504865 6.1:+79161618 None:intergenic
CTCATTCAAATCGTATGCAT+TGG 0.507227 6.1:-79160361 MS.gene064023:CDS
ATCATAATCGACTTGATGAA+AGG 0.507955 6.1:-79159863 MS.gene064023:CDS
GAGGGATAATCATGCTGAGT+TGG 0.508852 6.1:-79160189 MS.gene064023:CDS
ATTGGTCTTCAGTTTGGGTG+AGG 0.509410 6.1:-79160343 MS.gene064023:CDS
TGTCTATAAGATATATAAGT+GGG 0.514682 6.1:-79161658 MS.gene064023:CDS
GATCTTCAAACCTTGGGGAA+AGG 0.519004 6.1:+79159883 None:intergenic
TAAAGAATCGAACAAGTGAA+TGG 0.519618 6.1:+79160240 None:intergenic
AGAACCGGGGTTTCTTATGT+CGG 0.525241 6.1:-79159785 MS.gene064023:CDS
TCATAATCGACTTGATGAAA+GGG 0.526860 6.1:-79159862 MS.gene064023:CDS
CATAATAGTATTTGAAGGAA+AGG 0.529686 6.1:+79160051 None:intergenic
ACTTCAACAACGCACTAGCC+TGG 0.534735 6.1:+79160612 None:intergenic
TAACAAAGAAGGTTTCAAGA+AGG 0.538422 6.1:-79161817 MS.gene064023:CDS
AATCGAACAAGTGAATGGTC+TGG 0.540971 6.1:+79160245 None:intergenic
ATGAGGAGGACACAACAAAA+GGG 0.542065 6.1:-79160031 MS.gene064023:CDS
AACAAAGAAGGTTTCAAGAA+GGG 0.545537 6.1:-79161816 MS.gene064023:CDS
CATTTAGTGATAAAGAATCA+TGG 0.546005 6.1:-79161992 MS.gene064023:CDS
TTGATATCATTGTGCTTGAG+TGG 0.553728 6.1:+79159608 None:intergenic
CTGAAATCCACCATGAATGT+TGG 0.557140 6.1:-79159642 MS.gene064023:CDS
AATGAAGCTCTCTCGAAACC+AGG 0.565261 6.1:-79161366 MS.gene064023:CDS
TGAAAATTCAGTTATTGATG+CGG 0.565546 6.1:-79162033 MS.gene064023:CDS
GTGATGGGTCAAGGAGTTGG+AGG 0.568802 6.1:-79161498 MS.gene064023:CDS
ATGTCTATAAGATATATAAG+TGG 0.572287 6.1:-79161659 MS.gene064023:CDS
GGACCGCATAAGCTGACTGT+TGG 0.579264 6.1:+79160127 None:intergenic
TGGTGTATACTTGTTTACTA+CGG 0.585960 6.1:+79160106 None:intergenic
ATATTAACTTCATCTGAGAG+TGG 0.588105 6.1:-79162068 MS.gene064023:CDS
TCTTATGAAGTGATGGGTCA+AGG 0.589029 6.1:-79161507 MS.gene064023:CDS
TTGAAGAAAACCTTTCCCCA+AGG 0.594796 6.1:-79159893 MS.gene064023:CDS
GACAACTCGTCAAAAGGAGA+TGG 0.599038 6.1:-79161427 MS.gene064023:CDS
AGAACATCTTATGAAGTGAT+GGG 0.601988 6.1:-79161513 MS.gene064023:CDS
AACTCGTCAAAAGGAGATGG+TGG 0.603142 6.1:-79161424 MS.gene064023:CDS
ATCCCAACAGTCAGCTTATG+CGG 0.606153 6.1:-79160130 MS.gene064023:CDS
CTTCAAATACTATTATGAGG+AGG 0.607664 6.1:-79160045 MS.gene064023:CDS
AGAACTGGACTGTCACATGT+TGG 0.620791 6.1:+79161768 None:intergenic
AGCCACTTAAAGTCCGAAGT+AGG 0.621799 6.1:+79160392 None:intergenic
GGGTCAAGGAGTTGGAGGCA+CGG 0.621882 6.1:-79161493 MS.gene064023:CDS
ATTATGATCTTCAAACCTTG+GGG 0.630358 6.1:+79159878 None:intergenic
GGTCTTTGCTCATGGCACAT+GGG 0.639768 6.1:-79160557 MS.gene064023:CDS
TTTAGTGCCAACATTCATGG+TGG 0.641441 6.1:+79159635 None:intergenic
CATTATGGTTCAGAGAATGA+GGG 0.643278 6.1:-79160207 MS.gene064023:CDS
GATTTCAGCTTATCGACAGA+CGG 0.644926 6.1:+79159657 None:intergenic
TGAATAAATGAAAAGCAAGA+TGG 0.655697 6.1:+79160086 None:intergenic
CATGCCGACATAAGAAACCC+CGG 0.669794 6.1:+79159781 None:intergenic
TGTCGTATGTTTGAGAACCG+GGG 0.673760 6.1:-79159798 MS.gene064023:CDS
ATGTTGATAATGATAATGAG+AGG 0.683310 6.1:-79159947 MS.gene064023:CDS
TCAAACCATATACACAGACC+AGG 0.683597 6.1:-79160630 MS.gene064023:CDS
TGTTGATAATGATAATGAGA+GGG 0.689129 6.1:-79159946 MS.gene064023:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTCTATAAGATATATAAG+TGG - chr6.1:79160032-79160051 MS.gene064023:CDS 20.0%
!! CAATTCACAAAATAAGAAAT+CGG - chr6.1:79159823-79159842 MS.gene064023:CDS 20.0%
!! TGTCTATAAGATATATAAGT+GGG - chr6.1:79160033-79160052 MS.gene064023:CDS 20.0%
!! TTTAATTATGCATATAACAC+TGG - chr6.1:79159767-79159786 MS.gene064023:CDS 20.0%
!!! AATTTAATGTTCTGGTTTAT+GGG - chr6.1:79160650-79160669 MS.gene064023:CDS 20.0%
!!! ATGATGAAAAACTGTTTTAA+TGG - chr6.1:79161272-79161291 MS.gene064023:CDS 20.0%
!!! TGAATGTTTATATTGATTGA+AGG - chr6.1:79160622-79160641 MS.gene064023:CDS 20.0%
! AAAACACCTTGAAAAACATT+CGG + chr6.1:79161110-79161129 None:intergenic 25.0%
! ACAAAATAAGAAATCGGATA+AGG - chr6.1:79159829-79159848 MS.gene064023:CDS 25.0%
! ACCGAACAAACAATAAATAT+CGG - chr6.1:79160467-79160486 MS.gene064023:CDS 25.0%
! AGTACAAAATACTAACCTAA+TGG + chr6.1:79160493-79160512 None:intergenic 25.0%
! CATAATAGTATTTGAAGGAA+AGG + chr6.1:79161643-79161662 None:intergenic 25.0%
! CATTTAGTGATAAAGAATCA+TGG - chr6.1:79159699-79159718 MS.gene064023:CDS 25.0%
! CTTTAGTCATTTCAACATTA+TGG - chr6.1:79161469-79161488 MS.gene064023:CDS 25.0%
! TGAAAATTCAGTTATTGATG+CGG - chr6.1:79159658-79159677 MS.gene064023:CDS 25.0%
! TGAAATTTGAATGAATGTTC+TGG - chr6.1:79160540-79160559 MS.gene064023:CDS 25.0%
! TGAATAAATGAAAAGCAAGA+TGG + chr6.1:79161608-79161627 None:intergenic 25.0%
! TTCCTTCAAATACTATTATG+AGG - chr6.1:79161643-79161662 MS.gene064023:CDS 25.0%
! TTTAAGTCCAAAAATCGAAA+AGG + chr6.1:79160232-79160251 None:intergenic 25.0%
! TTTCGATGAGTTAACTAATT+TGG - chr6.1:79161202-79161221 MS.gene064023:intron 25.0%
!! AGGTTTAGAATTTAATGTTC+TGG - chr6.1:79160642-79160661 MS.gene064023:CDS 25.0%
!! CAAAGTTTTCACAATTAAGA+AGG - chr6.1:79161703-79161722 MS.gene064023:CDS 25.0%
!! TGTTGTATTTTGTTCTGATT+TGG - chr6.1:79160898-79160917 MS.gene064023:intron 25.0%
!!! ATGTTGATAATGATAATGAG+AGG - chr6.1:79161744-79161763 MS.gene064023:CDS 25.0%
!!! CTTATTTTGTGAATTGTTCT+TGG + chr6.1:79159819-79159838 None:intergenic 25.0%
!!! GAATTTAATGTTCTGGTTTA+TGG - chr6.1:79160649-79160668 MS.gene064023:CDS 25.0%
!!! GCTTTAATAAATTCTAAAGC+TGG - chr6.1:79160145-79160164 MS.gene064023:CDS 25.0%
!!! TGAAAAACTGTTTTAATGGA+AGG - chr6.1:79161276-79161295 MS.gene064023:CDS 25.0%
!!! TGTTGATAATGATAATGAGA+GGG - chr6.1:79161745-79161764 MS.gene064023:CDS 25.0%
AAACACATATGATCTTTCCA+TGG + chr6.1:79160713-79160732 None:intergenic 30.0%
AACAAAGAAGGTTTCAAGAA+GGG - chr6.1:79159875-79159894 MS.gene064023:CDS 30.0%
AACAATAAATATCGGCCATT+AGG - chr6.1:79160475-79160494 MS.gene064023:CDS 30.0%
AATCAGATTTCGACTACAAT+TGG - chr6.1:79161243-79161262 MS.gene064023:CDS 30.0%
AGAACATCTTATGAAGTGAT+GGG - chr6.1:79160178-79160197 MS.gene064023:CDS 30.0%
ATATTAACTTCATCTGAGAG+TGG - chr6.1:79159623-79159642 MS.gene064023:CDS 30.0%
ATCAGATTTCGACTACAATT+GGG - chr6.1:79161244-79161263 MS.gene064023:CDS 30.0%
ATGATTGTCAAAACCAAGAA+AGG + chr6.1:79160937-79160956 None:intergenic 30.0%
ATTATGATCTTCAAACCTTG+GGG + chr6.1:79161816-79161835 None:intergenic 30.0%
CAACAAGATTATGCTCTATT+TGG - chr6.1:79160418-79160437 MS.gene064023:CDS 30.0%
CTCCTCATAATAGTATTTGA+AGG + chr6.1:79161648-79161667 None:intergenic 30.0%
CTGGTATATGTGTGTTAATT+TGG - chr6.1:79160579-79160598 MS.gene064023:CDS 30.0%
CTTCAAATACTATTATGAGG+AGG - chr6.1:79161646-79161665 MS.gene064023:CDS 30.0%
GAGAATGCAAAGAAAAATCT+CGG - chr6.1:79161158-79161177 MS.gene064023:intron 30.0%
GATTATGATCTTCAAACCTT+GGG + chr6.1:79161817-79161836 None:intergenic 30.0%
GCCGATATTTATTGTTTGTT+CGG + chr6.1:79160471-79160490 None:intergenic 30.0%
TAAAGAAAAACCAGAGGAAA+GGG - chr6.1:79159964-79159983 MS.gene064023:CDS 30.0%
TAAAGAATCATGGAAGTCTT+TGG - chr6.1:79159709-79159728 MS.gene064023:CDS 30.0%
TAAAGAATCGAACAAGTGAA+TGG + chr6.1:79161454-79161473 None:intergenic 30.0%
TAACAAAGAAGGTTTCAAGA+AGG - chr6.1:79159874-79159893 MS.gene064023:CDS 30.0%
TGGATATCATAGTAAAAACC+TGG + chr6.1:79160346-79160365 None:intergenic 30.0%
TGGTGTATACTTGTTTACTA+CGG + chr6.1:79161588-79161607 None:intergenic 30.0%
TTTCTATTTACACAGCACAA+TGG - chr6.1:79160857-79160876 MS.gene064023:intron 30.0%
! AAATGCTCTGGTTTATGTAA+TGG + chr6.1:79160076-79160095 None:intergenic 30.0%
! AGCTGGAATATATTTGAAGT+TGG - chr6.1:79159997-79160016 MS.gene064023:CDS 30.0%
! GAATCTTCCTTTTCGATTTT+TGG - chr6.1:79160222-79160241 MS.gene064023:CDS 30.0%
! TATGGTTTGAGGTTTCTTAT+TGG + chr6.1:79161051-79161070 None:intergenic 30.0%
! TCAATTCCGAATGTTTTTCA+AGG - chr6.1:79161101-79161120 MS.gene064023:intron 30.0%
!! ATCATAATCGACTTGATGAA+AGG - chr6.1:79161828-79161847 MS.gene064023:CDS 30.0%
!! ATGTTCTGGTTTAGAATTGA+AGG - chr6.1:79160554-79160573 MS.gene064023:CDS 30.0%
!! TCATAATCGACTTGATGAAA+GGG - chr6.1:79161829-79161848 MS.gene064023:CDS 30.0%
!!! AAGACATAGCCAGTATTTTT+TGG - chr6.1:79160380-79160399 MS.gene064023:CDS 30.0%
!!! AGACATAGCCAGTATTTTTT+GGG - chr6.1:79160381-79160400 MS.gene064023:CDS 30.0%
!!! CTGCACAATATGTTTTAAAG+CGG - chr6.1:79161993-79162012 MS.gene064023:CDS 30.0%
!!! GTTTTTCAAGGTGTTTTTCA+TGG - chr6.1:79161113-79161132 MS.gene064023:intron 30.0%
AACTATGATCTTTGCATAGC+TGG + chr6.1:79160807-79160826 None:intergenic 35.0%
ACATTATGGTTCAGAGAATG+AGG - chr6.1:79161483-79161502 MS.gene064023:CDS 35.0%
ATAACACTGGATTCTCTGTT+AGG - chr6.1:79159780-79159799 MS.gene064023:CDS 35.0%
CATAAATTCCAAGGCAAGAT+AGG + chr6.1:79160680-79160699 None:intergenic 35.0%
CATTATGGTTCAGAGAATGA+GGG - chr6.1:79161484-79161503 MS.gene064023:CDS 35.0%
CGAGAAGTAAATGAAGTTCA+AGG - chr6.1:79160115-79160134 MS.gene064023:CDS 35.0%
CGATTATGATCTTCAAACCT+TGG + chr6.1:79161818-79161837 None:intergenic 35.0%
CGTTATGCTTGTAACAAAGA+AGG - chr6.1:79159863-79159882 MS.gene064023:CDS 35.0%
CTAAAGAAAAACCAGAGGAA+AGG - chr6.1:79159963-79159982 MS.gene064023:CDS 35.0%
CTCATTCAAATCGTATGCAT+TGG - chr6.1:79161330-79161349 MS.gene064023:CDS 35.0%
GAAAGCTAAAGAAAAACCAG+AGG - chr6.1:79159958-79159977 MS.gene064023:CDS 35.0%
GAGAACATCTTATGAAGTGA+TGG - chr6.1:79160177-79160196 MS.gene064023:CDS 35.0%
GTCTGCTTAATCCTAAAAAC+AGG - chr6.1:79159900-79159919 MS.gene064023:CDS 35.0%
TCCATTTGCCCAAAAAATAC+TGG + chr6.1:79160392-79160411 None:intergenic 35.0%
TCTAATGACAACTCGTCAAA+AGG - chr6.1:79160258-79160277 MS.gene064023:CDS 35.0%
TGTACAGAGCATAAATTCCA+AGG + chr6.1:79160689-79160708 None:intergenic 35.0%
TTCTCATACTCAACAAGAAC+TGG + chr6.1:79159941-79159960 None:intergenic 35.0%
! CATCGTAAGAGTGTGTTATT+TGG - chr6.1:79160954-79160973 MS.gene064023:intron 35.0%
! GGTTTCGAATGTTGATGTTT+TGG - chr6.1:79161766-79161785 MS.gene064023:CDS 35.0%
! TCTTTCAATGCTTTTCTTCG+TGG - chr6.1:79161413-79161432 MS.gene064023:CDS 35.0%
! TGGTTTAGAATTGAAGGTTC+TGG - chr6.1:79160560-79160579 MS.gene064023:CDS 35.0%
! TTTTAATGGAAGGCCTACTT+CGG - chr6.1:79161286-79161305 MS.gene064023:CDS 35.0%
! TTTTTCATGGTCTTTGCTCA+TGG - chr6.1:79161126-79161145 MS.gene064023:intron 35.0%
!! CGCTTTAAAACATATTGTGC+AGG + chr6.1:79161995-79162014 None:intergenic 35.0%
!! GCATGTTTTCAAGATTTTGG+AGG - chr6.1:79161928-79161947 MS.gene064023:CDS 35.0%
!! TATGCATTGGTCTTCAGTTT+GGG - chr6.1:79161343-79161362 MS.gene064023:CDS 35.0%
!! TCGGCATGTTTTCAAGATTT+TGG - chr6.1:79161925-79161944 MS.gene064023:CDS 35.0%
!! TTCAAGATTTTGGAGGTCTT+AGG - chr6.1:79161935-79161954 MS.gene064023:CDS 35.0%
!!! AGACATCAGCTACTTTTGAT+TGG - chr6.1:79160997-79161016 MS.gene064023:intron 35.0%
!!! CACAATATGTTTTAAAGCGG+TGG - chr6.1:79161996-79162015 MS.gene064023:CDS 35.0%
AATCGAACAAGTGAATGGTC+TGG + chr6.1:79161449-79161468 None:intergenic 40.0%
ATCTGAGAGTGGACAATTGA+CGG - chr6.1:79159634-79159653 MS.gene064023:CDS 40.0%
ATGAGGAGGACACAACAAAA+GGG - chr6.1:79161660-79161679 MS.gene064023:CDS 40.0%
ATGTCGTATGTTTGAGAACC+GGG - chr6.1:79161892-79161911 MS.gene064023:CDS 40.0%
ATTTATGCTCTGTACAGCCA+TGG - chr6.1:79160693-79160712 MS.gene064023:CDS 40.0%
CATGTCGTATGTTTGAGAAC+CGG - chr6.1:79161891-79161910 MS.gene064023:CDS 40.0%
CTGAAATCCACCATGAATGT+TGG - chr6.1:79162049-79162068 MS.gene064023:CDS 40.0%
GATTTCAGCTTATCGACAGA+CGG + chr6.1:79162037-79162056 None:intergenic 40.0%
GTCTTTAGTGCCAACATTCA+TGG + chr6.1:79162062-79162081 None:intergenic 40.0%
TATGAGGAGGACACAACAAA+AGG - chr6.1:79161659-79161678 MS.gene064023:CDS 40.0%
TCAAACCATATACACAGACC+AGG - chr6.1:79161061-79161080 MS.gene064023:intron 40.0%
TGGTCTGTGTATATGGTTTG+AGG + chr6.1:79161062-79161081 None:intergenic 40.0%
TTCATTTCAGCTGCCTTTCT+TGG - chr6.1:79160921-79160940 MS.gene064023:intron 40.0%
TTGAAGAAAACCTTTCCCCA+AGG - chr6.1:79161798-79161817 MS.gene064023:CDS 40.0%
TTTAGTGCCAACATTCATGG+TGG + chr6.1:79162059-79162078 None:intergenic 40.0%
! TCATGCTGAGTTGGACTTTA+AGG - chr6.1:79161511-79161530 MS.gene064023:CDS 40.0%
!! AAGATTTTGGAGGTCTTAGG+TGG - chr6.1:79161938-79161957 MS.gene064023:CDS 40.0%
!! GTATGCATTGGTCTTCAGTT+TGG - chr6.1:79161342-79161361 MS.gene064023:CDS 40.0%
!! TCACATGTTGGCCTGTTTTT+AGG + chr6.1:79159914-79159933 None:intergenic 40.0%
!! TCTTATGAAGTGATGGGTCA+AGG - chr6.1:79160184-79160203 MS.gene064023:CDS 40.0%
!!! GCCAGTATTTTTTGGGCAAA+TGG - chr6.1:79160388-79160407 MS.gene064023:CDS 40.0%
AACTCGTCAAAAGGAGATGG+TGG - chr6.1:79160267-79160286 MS.gene064023:CDS 45.0%
AATGAAGCTCTCTCGAAACC+AGG - chr6.1:79160325-79160344 MS.gene064023:CDS 45.0%
AGAACCGGGGTTTCTTATGT+CGG - chr6.1:79161906-79161925 MS.gene064023:CDS 45.0%
AGAACTGGACTGTCACATGT+TGG + chr6.1:79159926-79159945 None:intergenic 45.0%
AGCCACTTAAAGTCCGAAGT+AGG + chr6.1:79161302-79161321 None:intergenic 45.0%
ATCCCAACAGTCAGCTTATG+CGG - chr6.1:79161561-79161580 MS.gene064023:CDS 45.0%
CTCAAGTAGCACAAATGCTC+TGG + chr6.1:79160088-79160107 None:intergenic 45.0%
GAAAAACCAGAGGAAAGGGT+TGG - chr6.1:79159968-79159987 MS.gene064023:CDS 45.0%
GACAACTCGTCAAAAGGAGA+TGG - chr6.1:79160264-79160283 MS.gene064023:CDS 45.0%
GAGGGATAATCATGCTGAGT+TGG - chr6.1:79161502-79161521 MS.gene064023:CDS 45.0%
GATCTTCAAACCTTGGGGAA+AGG + chr6.1:79161811-79161830 None:intergenic 45.0%
TGTCGTATGTTTGAGAACCG+GGG - chr6.1:79161893-79161912 MS.gene064023:CDS 45.0%
TGTCTTCTGCAGCATCAACT+TGG + chr6.1:79160366-79160385 None:intergenic 45.0%
TTACAACCAACCCTTTCCTC+TGG + chr6.1:79159977-79159996 None:intergenic 45.0%
! ACTAGCCTGGTCTGTGTATA+TGG + chr6.1:79161069-79161088 None:intergenic 45.0%
! GTGAGGTCACATTTTACAGC+TGG - chr6.1:79161365-79161384 MS.gene064023:CDS 45.0%
!! ATTGGTCTTCAGTTTGGGTG+AGG - chr6.1:79161348-79161367 MS.gene064023:CDS 45.0%
!! GAAAGGGTTGGTTGTAAAGC+TGG - chr6.1:79159980-79159999 MS.gene064023:CDS 45.0%
ACTTCAACAACGCACTAGCC+TGG + chr6.1:79161082-79161101 None:intergenic 50.0%
CATGCCGACATAAGAAACCC+CGG + chr6.1:79161913-79161932 None:intergenic 50.0%
GACCGCATAAGCTGACTGTT+GGG + chr6.1:79161566-79161585 None:intergenic 50.0%
GGCCTACTTCGGACTTTAAG+TGG - chr6.1:79161297-79161316 MS.gene064023:CDS 50.0%
GGGTTGTCACAGTCGACATT+AGG - chr6.1:79161849-79161868 MS.gene064023:CDS 50.0%
GGTCTTTGCTCATGGCACAT+GGG - chr6.1:79161134-79161153 MS.gene064023:intron 50.0%
TGGGTGATCCTATCTTGCCT+TGG - chr6.1:79160669-79160688 MS.gene064023:CDS 50.0%
TGGTCTTTGCTCATGGCACA+TGG - chr6.1:79161133-79161152 MS.gene064023:intron 50.0%
!! GAAGTGATGGGTCAAGGAGT+TGG - chr6.1:79160190-79160209 MS.gene064023:CDS 50.0%
GGACCGCATAAGCTGACTGT+TGG + chr6.1:79161567-79161586 None:intergenic 55.0%
! CGTCAAAAGGAGATGGTGGC+TGG - chr6.1:79160271-79160290 MS.gene064023:CDS 55.0%
!! GTGATGGGTCAAGGAGTTGG+AGG - chr6.1:79160193-79160212 MS.gene064023:CDS 55.0%
GGGTCAAGGAGTTGGAGGCA+CGG - chr6.1:79160198-79160217 MS.gene064023:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 79159614 79162099 79159614 ID=MS.gene064023
chr6.1 mRNA 79159614 79162099 79159614 ID=MS.gene064023.t1;Parent=MS.gene064023
chr6.1 exon 79161217 79162099 79161217 ID=MS.gene064023.t1.exon1;Parent=MS.gene064023.t1
chr6.1 CDS 79161217 79162099 79161217 ID=cds.MS.gene064023.t1;Parent=MS.gene064023.t1
chr6.1 exon 79159614 79160782 79159614 ID=MS.gene064023.t1.exon2;Parent=MS.gene064023.t1
chr6.1 CDS 79159614 79160782 79159614 ID=cds.MS.gene064023.t1;Parent=MS.gene064023.t1
Gene Sequence

>MS.gene064023

ATGGATTTGATATTAACTTCATCTGAGAGTGGACAATTGACGGTTGAAAATTCAGTTATTGATGCGGATAGTTCTCAATGTTACTCATTTAGTGATAAAGAATCATGGAAGTCTTTGGTCTTTAAATCTATAAAAGAGATTGAAGATTTTTATTTTAATTATGCATATAACACTGGATTCTCTGTTAGGAGTATGTTGAAGTCCAAGAACAATTCACAAAATAAGAAATCGGATAAGGTGCATTATGTGCGTTATGCTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTCTGCTTAATCCTAAAAACAGGCCAACATGTGACAGTCCAGTTCTTGTTGAGTATGAGAAAGCTAAAGAAAAACCAGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGTTGGATGAAGCGTTGAATGTCTATAAGATATATAAGTGGGAAGTTGATCACTGTCATCCATTACATAAACCAGAGCATTTGTGCTACTTGAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTTGCTTTAATAAATTCTAAAGCTGGAATGTCGATGAGAACATCTTATGAAGTGATGGGTCAAGGAGTTGGAGGCACGGAGAATCTTCCTTTTCGATTTTTGGACTTAAAGAACTATCTAATGACAACTCGTCAAAAGGAGATGGTGGCTGGTGAAGCAACTGTTATTCAAGAATTCTTTAGAAATGAAGCTCTCTCGAAACCAGGTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCCAGTATTTTTTGGGCAAATGGAATTATGCAACAAGATTATGCTCTATTTGGTGATGTTGTCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGGTTAGTATTTTGTACTTCTCACAGTTTTTAATTCTTATATTCTTGAAATTTGAATGAATGTTCTGGTTTAGAATTGAAGGTTCTGGTATATGTGTGTTAATTTGGCTCTTGTGTGTGTTTAGAATTGAATGTTTATATTGATTGAAGGTTTAGAATTTAATGTTCTGGTTTATGGGTGATCCTATCTTGCCTTGGAATTTATGCTCTGTACAGCCATGGAAAGATCATATGTGTTTTTTTATCGATGATAAATAGCTCTTTCTGTGTTTGCGAGTTTTGACATCTCGCTTGAGAAGTTGTGCTATGTCCAGCTATGCAAAGATCATAGTTGTTTTTTTACAGTTGTTAAATGAATAGCTTTTTCTATTTACACAGCACAATGGTTTTATATTTTTTAAATATGTTGTATTTTGTTCTGATTTGGTTCATTTCAGCTGCCTTTCTTGGTTTTGACAATCATCGTAAGAGTGTGTTATTTGGTGCTGCGCTACTGTATGATGAGACATCAGCTACTTTTGATTGGTTGTTTACAACTTTTTTGAAGTGTATGTCCAATAAGAAACCTCAAACCATATACACAGACCAGGCTAGTGCGTTGTTGAAGTCAATTCCGAATGTTTTTCAAGGTGTTTTTCATGGTCTTTGCTCATGGCACATGGGAGAGAATGCAAAGAAAAATCTCGGCTCTCGTGCAAACAGTGCATTTTTCGATGAGTTAACTAATTTGGTTTCAAATGTCGAAGATGAATCAGATTTCGACTACAATTGGGATCAGATGATGAAAAACTGTTTTAATGGAAGGCCTACTTCGGACTTTAAGTGGCTTGTTCAAACTCATTCAAATCGTATGCATTGGTCTTCAGTTTGGGTGAGGTCACATTTTACAGCTGGTTTGAAAACGACACAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTTTGCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGGGATAATCATGCTGAGTTGGACTTTAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAACAGTCAGCTTATGCGGTCCGTAGTAAACAAGTATACACCATCTTGCTTTTCATTTATTCACAGTCAGTATGACCTTTCCTTCAAATACTATTATGAGGAGGACACAACAAAAGGGTCTGAATTGAACAAGTTCTTCAAAGTTTTCACAATTAAGAAGGTTGATTATAATTACGATGATGTTGATAATGATAATGAGAGGGTTTCGAATGTTGATGTTTTGGATGCAGAATTTGAAGAAAACCTTTCCCCAAGGTTTGAAGATCATAATCGACTTGATGAAAGGGTTGTCACAGTCGACATTAGGAGCAAAAGTTTTACTTGTTCATGTCGTATGTTTGAGAACCGGGGTTTCTTATGTCGGCATGTTTTCAAGATTTTGGAGGTCTTAGGTGGTCATGTGCAATATCATTTTTTGAAGACTATACCTGCACAATATGTTTTAAAGCGGTGGACTAGAGATGTGCGTCCGTCTGTCGATAAGCTGAAATCCACCATGAATGTTGGCACTAAAGACACCACTCAAGCACAATGA
Protein sequence

>MS.gene064023.t1

MDLILTSSESGQLTVENSVIDADSSQCYSFSDKESWKSLVFKSIKEIEDFYFNYAYNTGFSVRSMLKSKNNSQNKKSDKVHYVRYACNKEGFKKGSLLNPKNRPTCDSPVLVEYEKAKEKPEERVGCKAGIYLKLDEALNVYKIYKWEVDHCHPLHKPEHLCYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFRFLDLKNYLMTTRQKEMVAGEATVIQEFFRNEALSKPGFYYDIQVDAAEDIASIFWANGIMQQDYALFGDVVSFDTTYRTNNKYRPLAAFLGFDNHRKSVLFGAALLYDETSATFDWLFTTFLKCMSNKKPQTIYTDQASALLKSIPNVFQGVFHGLCSWHMGENAKKNLGSRANSAFFDELTNLVSNVEDESDFDYNWDQMMKNCFNGRPTSDFKWLVQTHSNRMHWSSVWVRSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVRFFSHFNIMVQRMRDNHAELDFKAANTRTKNNYPNSQLMRSVVNKYTPSCFSFIHSQYDLSFKYYYEEDTTKGSELNKFFKVFTIKKVDYNYDDVDNDNERVSNVDVLDAEFEENLSPRFEDHNRLDERVVTVDIRSKSFTCSCRMFENRGFLCRHVFKILEVLGGHVQYHFLKTIPAQYVLKRWTRDVRPSVDKLKSTMNVGTKDTTQAQ