Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064055.t1 | XP_003620925.1 | 90.5 | 368 | 35 | 0 | 1 | 368 | 1 | 368 | 5.90E-196 | 693.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064055.t1 | F4K933 | 41.5 | 378 | 187 | 10 | 1 | 365 | 15 | 371 | 5.6e-70 | 266.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064055.t1 | G7KJT8 | 90.5 | 368 | 35 | 0 | 1 | 368 | 1 | 368 | 4.3e-196 | 693.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064055.t1 | TF | HRT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064055.t1 | MTR_6g092520 | 90.489 | 368 | 35 | 0 | 1 | 368 | 1 | 368 | 0.0 | 694 |
| MS.gene064055.t1 | MTR_7g090060 | 72.922 | 373 | 90 | 2 | 2 | 363 | 6 | 378 | 0.0 | 544 |
| MS.gene064055.t1 | MTR_6g092500 | 64.865 | 111 | 34 | 1 | 1 | 111 | 48 | 153 | 2.00e-41 | 143 |
| MS.gene064055.t1 | MTR_6g092480 | 44.167 | 120 | 52 | 2 | 121 | 226 | 9 | 127 | 1.12e-24 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064055.t1 | AT5G56780 | 41.534 | 378 | 187 | 10 | 1 | 365 | 15 | 371 | 3.39e-83 | 261 |
| MS.gene064055.t1 | AT5G56770 | 41.765 | 170 | 77 | 3 | 1 | 170 | 54 | 201 | 3.59e-34 | 127 |
| MS.gene064055.t1 | AT4G26170 | 34.270 | 178 | 79 | 5 | 207 | 364 | 234 | 393 | 1.06e-18 | 87.8 |
| MS.gene064055.t1 | AT4G26170 | 31.579 | 152 | 61 | 4 | 252 | 361 | 354 | 504 | 6.47e-11 | 63.9 |
Find 73 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATAACCTGCCACAAAATT+TGG | 0.088070 | 6.1:-79537540 | MS.gene064055:CDS |
| CAACATCATGTTTAATATTT+TGG | 0.103204 | 6.1:+79536261 | None:intergenic |
| GGCAACATGCTTGGTTTAAT+TGG | 0.169302 | 6.1:+79536554 | None:intergenic |
| TAAAATTTGTGGAGTGATTT+TGG | 0.187241 | 6.1:-79536402 | MS.gene064055:CDS |
| CGAGTAGTTGTGGTTTATTT+AGG | 0.242234 | 6.1:-79537434 | MS.gene064055:CDS |
| AATTGGTTTCAGATTCTTAT+TGG | 0.254920 | 6.1:-79537620 | MS.gene064055:intron |
| ATCAATTATTTCTAATTAAT+AGG | 0.256718 | 6.1:+79536074 | None:intergenic |
| GTTTCCCAATTGTTTATAGA+TGG | 0.290530 | 6.1:-79537280 | MS.gene064055:CDS |
| AATTCCACATGTAATAGTTT+TGG | 0.293273 | 6.1:+79536190 | None:intergenic |
| TGTAGAAGACAACCAGTTAA+AGG | 0.297867 | 6.1:-79536146 | MS.gene064055:CDS |
| TGTACAACCTTCCTTTCCTT+TGG | 0.299617 | 6.1:+79537574 | None:intergenic |
| CATAACCTGCCACAAAATTT+GGG | 0.300743 | 6.1:-79537539 | MS.gene064055:CDS |
| GTTGTATCTTGAACTATCTT+AGG | 0.344160 | 6.1:+79536449 | None:intergenic |
| TTCTTATTGGTCCTTCTGAT+TGG | 0.353606 | 6.1:-79537607 | MS.gene064055:CDS |
| TAATAACGGTCCACGGCGTC+CGG | 0.354487 | 6.1:-79536678 | MS.gene064055:CDS |
| TCGGATTTGTTATCTTTCAT+AGG | 0.354876 | 6.1:+79536533 | None:intergenic |
| CTCCAATGTTATGGTAGAAA+TGG | 0.355200 | 6.1:-79537386 | MS.gene064055:CDS |
| AGCTCTGTCGACTAGCGGTT+TGG | 0.358465 | 6.1:-79537492 | MS.gene064055:CDS |
| TGGTAGAAATGGAGCTCATT+TGG | 0.362642 | 6.1:-79537375 | MS.gene064055:CDS |
| AATGGAGCTCATTTGGATAA+TGG | 0.363874 | 6.1:-79537368 | MS.gene064055:CDS |
| GAAACAATGAACGTCCCTTT+TGG | 0.367640 | 6.1:+79537321 | None:intergenic |
| AAAAGATGTCATGAACATAA+AGG | 0.370970 | 6.1:-79536119 | MS.gene064055:CDS |
| ATGATTCTAGCTTCTCTCAT+TGG | 0.373036 | 6.1:-79538219 | MS.gene064055:CDS |
| TTTCATGAAATCTTTCTTCA+AGG | 0.381460 | 6.1:-79537302 | MS.gene064055:CDS |
| ATTTGAATCTTCTCACCAAA+AGG | 0.382515 | 6.1:-79537336 | MS.gene064055:CDS |
| AGAATTTGAACACGCGAGAT+AGG | 0.386624 | 6.1:+79536483 | None:intergenic |
| GGAGCCCATCTATAAACAAT+TGG | 0.397811 | 6.1:+79537275 | None:intergenic |
| GCTCTGTCGACTAGCGGTTT+GGG | 0.400184 | 6.1:-79537491 | MS.gene064055:CDS |
| AGACTCTCAGCCATTGTTTG+TGG | 0.408188 | 6.1:+79536230 | None:intergenic |
| TCTTATTGGTCCTTCTGATT+GGG | 0.433564 | 6.1:-79537606 | MS.gene064055:CDS |
| TGTTTGCAAGGCATCTCCCT+TGG | 0.436980 | 6.1:+79536745 | None:intergenic |
| GCCGCCATTGTCTGCTTCAT+CGG | 0.439254 | 6.1:+79536514 | None:intergenic |
| AAAGATGTCATGAACATAAA+GGG | 0.444185 | 6.1:-79536118 | MS.gene064055:CDS |
| GAGAAGAGTGGTAAAATTTG+TGG | 0.450994 | 6.1:-79536413 | MS.gene064055:CDS |
| TTTCCCAATTGTTTATAGAT+GGG | 0.470064 | 6.1:-79537279 | MS.gene064055:CDS |
| AGAACAAGACTCCAATGTTA+TGG | 0.472021 | 6.1:-79537395 | MS.gene064055:CDS |
| TGAGTACATTTGATTATGCT+TGG | 0.472258 | 6.1:-79536709 | MS.gene064055:CDS |
| GTTAGGTGTCATGAACATAA+AGG | 0.478166 | 6.1:-79536338 | MS.gene064055:CDS |
| GCTTGGAACACAATTAATAA+CGG | 0.491690 | 6.1:-79536692 | MS.gene064055:CDS |
| CAGTTGAGATTCTGTTTGCA+AGG | 0.499330 | 6.1:+79536733 | None:intergenic |
| ATACTCAACAAAATTTCATC+AGG | 0.499424 | 6.1:-79536641 | MS.gene064055:CDS |
| GAGCCCATCTATAAACAATT+GGG | 0.501782 | 6.1:+79537276 | None:intergenic |
| CCTTCACTCAAAAGAAAGTA+GGG | 0.503569 | 6.1:-79536580 | MS.gene064055:CDS |
| CTCCATTTCTACCATAACAT+TGG | 0.504477 | 6.1:+79537384 | None:intergenic |
| TTTGAATCTTCTCACCAAAA+GGG | 0.504759 | 6.1:-79537335 | MS.gene064055:CDS |
| CCCTTCACTCAAAAGAAAGT+AGG | 0.510670 | 6.1:-79536581 | MS.gene064055:CDS |
| CGACTTGCATCGAGTAGTTG+TGG | 0.511029 | 6.1:-79537444 | MS.gene064055:CDS |
| AACTGGTTGTCTTCTACAAG+TGG | 0.517479 | 6.1:+79536151 | None:intergenic |
| CTGCCACAAAATTTGGGGCC+GGG | 0.522463 | 6.1:-79537533 | MS.gene064055:CDS |
| CCTGCCACAAAATTTGGGGC+CGG | 0.531387 | 6.1:-79537534 | MS.gene064055:CDS |
| TCTTTCATAGGCAACATGCT+TGG | 0.544953 | 6.1:+79536545 | None:intergenic |
| GACTACTCCAAAGGAAAGGA+AGG | 0.558934 | 6.1:-79537581 | MS.gene064055:CDS |
| AATAACGGTCCACGGCGTCC+GGG | 0.559160 | 6.1:-79536677 | MS.gene064055:CDS |
| GGGCCGGGAGTCTATGAGCT+CGG | 0.562719 | 6.1:-79537518 | MS.gene064055:CDS |
| TTCTAGCTTCTCTCATTGGA+AGG | 0.570435 | 6.1:-79538215 | MS.gene064055:intron |
| GAGTAGTCTTCCCAATCAGA+AGG | 0.582452 | 6.1:+79537596 | None:intergenic |
| GTCACCAAAACTATTACATG+TGG | 0.607083 | 6.1:-79536194 | MS.gene064055:CDS |
| GTTGAACAGATGCAGACCAA+GGG | 0.612709 | 6.1:-79536761 | MS.gene064055:intron |
| GGAAGACTACTCCAAAGGAA+AGG | 0.612749 | 6.1:-79537585 | MS.gene064055:CDS |
| TGAAGATCTTCCACAAACAA+TGG | 0.618416 | 6.1:-79536240 | MS.gene064055:CDS |
| TGTTGAACAGATGCAGACCA+AGG | 0.619532 | 6.1:-79536762 | MS.gene064055:intron |
| ACTCCGAGCTCATAGACTCC+CGG | 0.622890 | 6.1:+79537515 | None:intergenic |
| AGAATATCACCCGGACGCCG+TGG | 0.625598 | 6.1:+79536668 | None:intergenic |
| GATTGGGAAGACTACTCCAA+AGG | 0.629735 | 6.1:-79537590 | MS.gene064055:CDS |
| TTCTATTTGTACAAATACGC+CGG | 0.636888 | 6.1:-79536372 | MS.gene064055:CDS |
| ACACAATTAATAACGGTCCA+CGG | 0.642408 | 6.1:-79536685 | MS.gene064055:CDS |
| GGAGTAGCTCTGTCGACTAG+CGG | 0.648422 | 6.1:-79537497 | MS.gene064055:CDS |
| CACAACTACTCGATGCAAGT+CGG | 0.662201 | 6.1:+79537445 | None:intergenic |
| TCCGATGAAGCAGACAATGG+CGG | 0.674520 | 6.1:-79536515 | MS.gene064055:CDS |
| AAATCCGATGAAGCAGACAA+TGG | 0.675612 | 6.1:-79536518 | MS.gene064055:CDS |
| AGTATTTCAAGAATATCACC+CGG | 0.675652 | 6.1:+79536659 | None:intergenic |
| ATAACCTGCCACAAAATTTG+GGG | 0.677319 | 6.1:-79537538 | MS.gene064055:CDS |
| GAACTATCTTAGGACGCGAG+CGG | 0.699803 | 6.1:+79536459 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAATTAATAGATTAG+AGG | + | chr6.1:79536166-79536185 | None:intergenic | 10.0% |
| !! | ATAATCAATATATATGTATT+CGG | + | chr6.1:79536688-79536707 | None:intergenic | 10.0% |
| !! | TGATTATTCATGTTAATAAT+TGG | - | chr6.1:79536701-79536720 | MS.gene064055:CDS | 15.0% |
| !!! | GCATTTATATTTAATCTTTT+GGG | + | chr6.1:79537490-79537509 | None:intergenic | 15.0% |
| !!! | TGCATTTATATTTAATCTTT+TGG | + | chr6.1:79537491-79537510 | None:intergenic | 15.0% |
| !!! | TGTTTTTGAATCTAAAAATA+CGG | - | chr6.1:79536583-79536602 | MS.gene064055:CDS | 15.0% |
| !! | AATCAAACTGTGTAAATAAT+AGG | + | chr6.1:79536274-79536293 | None:intergenic | 20.0% |
| !! | AATTAAGAGCTAAGTTATAT+AGG | - | chr6.1:79537311-79537330 | MS.gene064055:CDS | 20.0% |
| !! | ACTGAAAAATATCAAACTAA+AGG | - | chr6.1:79536469-79536488 | MS.gene064055:CDS | 20.0% |
| !! | ATAATATGTATCTCAAATCA+TGG | + | chr6.1:79537230-79537249 | None:intergenic | 20.0% |
| !! | CTGAAAAATATCAAACTAAA+GGG | - | chr6.1:79536470-79536489 | MS.gene064055:CDS | 20.0% |
| !! | TCAATTTAATAAGATCAAGA+TGG | - | chr6.1:79537121-79537140 | MS.gene064055:intron | 20.0% |
| !!! | CAACATCATGTTTAATATTT+TGG | + | chr6.1:79538080-79538099 | None:intergenic | 20.0% |
| !!! | TGCTCATATTTAAAACTATT+TGG | + | chr6.1:79536619-79536638 | None:intergenic | 20.0% |
| ! | AAAAGATGTCATGAACATAA+AGG | - | chr6.1:79538219-79538238 | MS.gene064055:CDS | 25.0% |
| ! | AAAGATGTCATGAACATAAA+GGG | - | chr6.1:79538220-79538239 | MS.gene064055:CDS | 25.0% |
| ! | AATGCATGAAATTTACTTAC+AGG | + | chr6.1:79537087-79537106 | None:intergenic | 25.0% |
| ! | ATACTCAACAAAATTTCATC+AGG | - | chr6.1:79537697-79537716 | MS.gene064055:intron | 25.0% |
| ! | TTTCATGAAATCTTTCTTCA+AGG | - | chr6.1:79537036-79537055 | MS.gene064055:intron | 25.0% |
| ! | TTTCCCAATTGTTTATAGAT+GGG | - | chr6.1:79537059-79537078 | MS.gene064055:intron | 25.0% |
| !! | AATTCCACATGTAATAGTTT+TGG | + | chr6.1:79538151-79538170 | None:intergenic | 25.0% |
| !! | AATTGGTTTCAGATTCTTAT+TGG | - | chr6.1:79536718-79536737 | MS.gene064055:CDS | 25.0% |
| !! | TAAAATTTGTGGAGTGATTT+TGG | - | chr6.1:79537936-79537955 | MS.gene064055:intron | 25.0% |
| !!! | TGTGGAATTATTTTGAAAGA+TGG | - | chr6.1:79538162-79538181 | MS.gene064055:intron | 25.0% |
| AGAGCTAAGTTATATAGGTT+TGG | - | chr6.1:79537316-79537335 | MS.gene064055:CDS | 30.0% | |
| AGTATTTCAAGAATATCACC+CGG | + | chr6.1:79537682-79537701 | None:intergenic | 30.0% | |
| ATTTGAATCTTCTCACCAAA+AGG | - | chr6.1:79537002-79537021 | MS.gene064055:intron | 30.0% | |
| CAAAACGAGCATTTACAATA+TGG | + | chr6.1:79537201-79537220 | None:intergenic | 30.0% | |
| GAGTTAATCGATTAAGTCTT+TGG | - | chr6.1:79537393-79537412 | MS.gene064055:CDS | 30.0% | |
| GCTTGGAACACAATTAATAA+CGG | - | chr6.1:79537646-79537665 | MS.gene064055:intron | 30.0% | |
| GTTGTATCTTGAACTATCTT+AGG | + | chr6.1:79537892-79537911 | None:intergenic | 30.0% | |
| GTTTCCCAATTGTTTATAGA+TGG | - | chr6.1:79537058-79537077 | MS.gene064055:intron | 30.0% | |
| TGAGTACATTTGATTATGCT+TGG | - | chr6.1:79537629-79537648 | MS.gene064055:intron | 30.0% | |
| TTAAATATGAGCAGTCTGAT+TGG | - | chr6.1:79536626-79536645 | MS.gene064055:CDS | 30.0% | |
| TTATATAGGTTTGGAAGTCT+AGG | - | chr6.1:79537325-79537344 | MS.gene064055:CDS | 30.0% | |
| TTCTATTTGTACAAATACGC+CGG | - | chr6.1:79537966-79537985 | MS.gene064055:intron | 30.0% | |
| TTTGAATCTTCTCACCAAAA+GGG | - | chr6.1:79537003-79537022 | MS.gene064055:intron | 30.0% | |
| ! | AATTTTACCACTCTTCTCAA+CGG | + | chr6.1:79537923-79537942 | None:intergenic | 30.0% |
| ! | ACAAGAACATTTTCAGATGT+AGG | - | chr6.1:79537721-79537740 | MS.gene064055:intron | 30.0% |
| ! | CATCTTTTTCTTCCTTTAAC+TGG | + | chr6.1:79538207-79538226 | None:intergenic | 30.0% |
| !! | TCGGATTTGTTATCTTTCAT+AGG | + | chr6.1:79537808-79537827 | None:intergenic | 30.0% |
| AATGGAGCTCATTTGGATAA+TGG | - | chr6.1:79536970-79536989 | MS.gene064055:intron | 35.0% | |
| ACACAATTAATAACGGTCCA+CGG | - | chr6.1:79537653-79537672 | MS.gene064055:intron | 35.0% | |
| AGAACAAGACTCCAATGTTA+TGG | - | chr6.1:79536943-79536962 | MS.gene064055:intron | 35.0% | |
| ATAACCTGCCACAAAATTTG+GGG | - | chr6.1:79536800-79536819 | MS.gene064055:intron | 35.0% | |
| ATCGATTAACTCACAACAAG+AGG | + | chr6.1:79537385-79537404 | None:intergenic | 35.0% | |
| CAAAAAGAGGAAATGCTTGT+AGG | - | chr6.1:79538052-79538071 | MS.gene064055:intron | 35.0% | |
| CATAACCTGCCACAAAATTT+GGG | - | chr6.1:79536799-79536818 | MS.gene064055:intron | 35.0% | |
| CCTTCACTCAAAAGAAAGTA+GGG | - | chr6.1:79537758-79537777 | MS.gene064055:intron | 35.0% | |
| CGAGTAGTTGTGGTTTATTT+AGG | - | chr6.1:79536904-79536923 | MS.gene064055:intron | 35.0% | |
| CTCCAATGTTATGGTAGAAA+TGG | - | chr6.1:79536952-79536971 | MS.gene064055:intron | 35.0% | |
| CTCCATTTCTACCATAACAT+TGG | + | chr6.1:79536957-79536976 | None:intergenic | 35.0% | |
| GAGAAGAGTGGTAAAATTTG+TGG | - | chr6.1:79537925-79537944 | MS.gene064055:intron | 35.0% | |
| GAGCATTTACAATATGGTCA+AGG | + | chr6.1:79537195-79537214 | None:intergenic | 35.0% | |
| GAGCCCATCTATAAACAATT+GGG | + | chr6.1:79537065-79537084 | None:intergenic | 35.0% | |
| GTCACCAAAACTATTACATG+TGG | - | chr6.1:79538144-79538163 | MS.gene064055:intron | 35.0% | |
| TCCAAGTCAGAATCAAAAAG+AGG | - | chr6.1:79538039-79538058 | MS.gene064055:intron | 35.0% | |
| TCTTATTGGTCCTTCTGATT+GGG | - | chr6.1:79536732-79536751 | MS.gene064055:CDS | 35.0% | |
| TGAAGATCTTCCACAAACAA+TGG | - | chr6.1:79538098-79538117 | MS.gene064055:intron | 35.0% | |
| TGTAGAAGACAACCAGTTAA+AGG | - | chr6.1:79538192-79538211 | MS.gene064055:intron | 35.0% | |
| TTACAATATGGTCAAGGCAA+TGG | + | chr6.1:79537189-79537208 | None:intergenic | 35.0% | |
| TTCTTATTGGTCCTTCTGAT+TGG | - | chr6.1:79536731-79536750 | MS.gene064055:CDS | 35.0% | |
| ! | GCAATGGTAATCTAGCATTT+TGG | + | chr6.1:79537173-79537192 | None:intergenic | 35.0% |
| ! | GTTAGGTGTCATGAACATAA+AGG | - | chr6.1:79538000-79538019 | MS.gene064055:intron | 35.0% |
| !! | ATGATTCTAGCTTCTCTCAT+TGG | - | chr6.1:79536119-79536138 | MS.gene064055:CDS | 35.0% |
| !! | CCTACTTTCTTTTGAGTGAA+GGG | + | chr6.1:79537760-79537779 | None:intergenic | 35.0% |
| !! | TCCTCTTTTTGATTCTGACT+TGG | + | chr6.1:79538043-79538062 | None:intergenic | 35.0% |
| !!! | TTCAGCTAAGTCGTTTTTCT+GGG | - | chr6.1:79536338-79536357 | MS.gene064055:CDS | 35.0% |
| !!! | TTTCAGCTAAGTCGTTTTTC+TGG | - | chr6.1:79536337-79536356 | MS.gene064055:CDS | 35.0% |
| AAATCCGATGAAGCAGACAA+TGG | - | chr6.1:79537820-79537839 | MS.gene064055:intron | 40.0% | |
| AACTGGTTGTCTTCTACAAG+TGG | + | chr6.1:79538190-79538209 | None:intergenic | 40.0% | |
| AGAATTTGAACACGCGAGAT+AGG | + | chr6.1:79537858-79537877 | None:intergenic | 40.0% | |
| AGCAGTCTGATTGGATTCAA+TGG | - | chr6.1:79536635-79536654 | MS.gene064055:CDS | 40.0% | |
| CAGTTGAGATTCTGTTTGCA+AGG | + | chr6.1:79537608-79537627 | None:intergenic | 40.0% | |
| CCATAACCTGCCACAAAATT+TGG | - | chr6.1:79536798-79536817 | MS.gene064055:intron | 40.0% | |
| CCCTTCACTCAAAAGAAAGT+AGG | - | chr6.1:79537757-79537776 | MS.gene064055:intron | 40.0% | |
| GGAGCCCATCTATAAACAAT+TGG | + | chr6.1:79537066-79537085 | None:intergenic | 40.0% | |
| GGCAACATGCTTGGTTTAAT+TGG | + | chr6.1:79537787-79537806 | None:intergenic | 40.0% | |
| TCTTTCATAGGCAACATGCT+TGG | + | chr6.1:79537796-79537815 | None:intergenic | 40.0% | |
| TGGTAGAAATGGAGCTCATT+TGG | - | chr6.1:79536963-79536982 | MS.gene064055:intron | 40.0% | |
| TGTACAACCTTCCTTTCCTT+TGG | + | chr6.1:79536767-79536786 | None:intergenic | 40.0% | |
| ! | CCAAATTTTGTGGCAGGTTA+TGG | + | chr6.1:79536801-79536820 | None:intergenic | 40.0% |
| ! | GAAACAATGAACGTCCCTTT+TGG | + | chr6.1:79537020-79537039 | None:intergenic | 40.0% |
| ! | GATTTTTCCGTTGAGAAGAG+TGG | - | chr6.1:79537913-79537932 | MS.gene064055:intron | 40.0% |
| ! | TGTGGAGTGATTTTGGATGA+TGG | - | chr6.1:79537943-79537962 | MS.gene064055:intron | 40.0% |
| !! | CCCTACTTTCTTTTGAGTGA+AGG | + | chr6.1:79537761-79537780 | None:intergenic | 40.0% |
| !! | TTCTAGCTTCTCTCATTGGA+AGG | - | chr6.1:79536123-79536142 | MS.gene064055:CDS | 40.0% |
| !!! | CACCTAACTCTTTTTTCGAC+CGG | + | chr6.1:79537988-79538007 | None:intergenic | 40.0% |
| !!! | TCAGCTAAGTCGTTTTTCTG+GGG | - | chr6.1:79536339-79536358 | MS.gene064055:CDS | 40.0% |
| AGACTCTCAGCCATTGTTTG+TGG | + | chr6.1:79538111-79538130 | None:intergenic | 45.0% | |
| CACAACTACTCGATGCAAGT+CGG | + | chr6.1:79536896-79536915 | None:intergenic | 45.0% | |
| GACTACTCCAAAGGAAAGGA+AGG | - | chr6.1:79536757-79536776 | MS.gene064055:intron | 45.0% | |
| GAGTAGTCTTCCCAATCAGA+AGG | + | chr6.1:79536745-79536764 | None:intergenic | 45.0% | |
| GATTGGGAAGACTACTCCAA+AGG | - | chr6.1:79536748-79536767 | MS.gene064055:CDS | 45.0% | |
| GGAAGACTACTCCAAAGGAA+AGG | - | chr6.1:79536753-79536772 | MS.gene064055:CDS | 45.0% | |
| GTTGAACAGATGCAGACCAA+GGG | - | chr6.1:79537577-79537596 | MS.gene064055:CDS | 45.0% | |
| TCACGCTGTCAAGACATTGT+TGG | - | chr6.1:79536521-79536540 | MS.gene064055:CDS | 45.0% | |
| TGTTGAACAGATGCAGACCA+AGG | - | chr6.1:79537576-79537595 | MS.gene064055:CDS | 45.0% | |
| CGACTTGCATCGAGTAGTTG+TGG | - | chr6.1:79536894-79536913 | MS.gene064055:intron | 50.0% | |
| CGCCGGTCGAAAAAAGAGTT+AGG | - | chr6.1:79537983-79538002 | MS.gene064055:intron | 50.0% | |
| GAACTATCTTAGGACGCGAG+CGG | + | chr6.1:79537882-79537901 | None:intergenic | 50.0% | |
| TCCGATGAAGCAGACAATGG+CGG | - | chr6.1:79537823-79537842 | MS.gene064055:intron | 50.0% | |
| ! | TGTTTGCAAGGCATCTCCCT+TGG | + | chr6.1:79537596-79537615 | None:intergenic | 50.0% |
| ACTCCGAGCTCATAGACTCC+CGG | + | chr6.1:79536826-79536845 | None:intergenic | 55.0% | |
| GCCGCCATTGTCTGCTTCAT+CGG | + | chr6.1:79537827-79537846 | None:intergenic | 55.0% | |
| TAATAACGGTCCACGGCGTC+CGG | - | chr6.1:79537660-79537679 | MS.gene064055:intron | 55.0% | |
| ! | ACTCCCGGCCCCAAATTTTG+TGG | + | chr6.1:79536811-79536830 | None:intergenic | 55.0% |
| ! | AGCTCTGTCGACTAGCGGTT+TGG | - | chr6.1:79536846-79536865 | MS.gene064055:intron | 55.0% |
| ! | CCTGCCACAAAATTTGGGGC+CGG | - | chr6.1:79536804-79536823 | MS.gene064055:intron | 55.0% |
| ! | CTGCCACAAAATTTGGGGCC+GGG | - | chr6.1:79536805-79536824 | MS.gene064055:intron | 55.0% |
| ! | GCTCTGTCGACTAGCGGTTT+GGG | - | chr6.1:79536847-79536866 | MS.gene064055:intron | 55.0% |
| ! | GGAGTAGCTCTGTCGACTAG+CGG | - | chr6.1:79536841-79536860 | MS.gene064055:intron | 55.0% |
| AATAACGGTCCACGGCGTCC+GGG | - | chr6.1:79537661-79537680 | MS.gene064055:intron | 60.0% | |
| AGAATATCACCCGGACGCCG+TGG | + | chr6.1:79537673-79537692 | None:intergenic | 60.0% | |
| ! | CCGGCCCCAAATTTTGTGGC+AGG | + | chr6.1:79536807-79536826 | None:intergenic | 60.0% |
| GGGCCGGGAGTCTATGAGCT+CGG | - | chr6.1:79536820-79536839 | MS.gene064055:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 79536085 | 79538275 | 79536085 | ID=MS.gene064055 |
| chr6.1 | mRNA | 79536085 | 79538275 | 79536085 | ID=MS.gene064055.t1;Parent=MS.gene064055 |
| chr6.1 | exon | 79538216 | 79538275 | 79538216 | ID=MS.gene064055.t1.exon1;Parent=MS.gene064055.t1 |
| chr6.1 | CDS | 79538216 | 79538275 | 79538216 | ID=cds.MS.gene064055.t1;Parent=MS.gene064055.t1 |
| chr6.1 | exon | 79537274 | 79537630 | 79537274 | ID=MS.gene064055.t1.exon2;Parent=MS.gene064055.t1 |
| chr6.1 | CDS | 79537274 | 79537630 | 79537274 | ID=cds.MS.gene064055.t1;Parent=MS.gene064055.t1 |
| chr6.1 | exon | 79536085 | 79536774 | 79536085 | ID=MS.gene064055.t1.exon3;Parent=MS.gene064055.t1 |
| chr6.1 | CDS | 79536085 | 79536774 | 79536085 | ID=cds.MS.gene064055.t1;Parent=MS.gene064055.t1 |
| Gene Sequence |
| Protein sequence |
