AlfalfaGEDB | MS.gene064154

M. sativa cultivar XinJiangDaYe / MS.gene064154

KEGG: K13436
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064154.t1	XP_003609867.1	99.2	363	2	1	1	363	1	362	3.80E-203	717.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064154.t1	Q41328	75.4	349	85	1	1	349	1	348	9.8e-152	537.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064154.t1	G7JQ36	99.2	363	2	1	1	363	1	362	2.7e-203	717.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064154.t1	MTR_4g123870	99.174	363	2	1	1	363	32	393	0.0	746
MS.gene064154.t1	MTR_4g123870	99.174	363	2	1	1	363	1	362	0.0	744
MS.gene064154.t1	MTR_1g086230	72.493	349	96	0	1	349	116	464	0.0	526
MS.gene064154.t1	MTR_1g116520	66.857	350	104	3	7	349	9	353	2.23e-163	461
MS.gene064154.t1	MTR_1g116520	66.857	350	104	3	7	349	50	394	1.42e-162	461
MS.gene064154.t1	MTR_7g093610	68.831	308	93	1	46	350	47	354	5.15e-147	420
MS.gene064154.t1	MTR_1g054340	66.134	313	98	2	52	360	60	368	5.38e-141	405
MS.gene064154.t1	MTR_3g019120	58.824	306	104	3	47	349	165	451	8.01e-116	344
MS.gene064154.t1	MTR_3g019120	58.824	306	104	3	47	349	205	491	6.22e-115	343
MS.gene064154.t1	MTR_7g109670	48.505	301	146	4	50	346	361	656	1.29e-87	279

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064154.t1	AT1G48210	70.718	362	105	1	1	362	1	361	0.0	529
MS.gene064154.t1	AT1G48210	70.718	362	105	1	1	362	1	361	0.0	529
MS.gene064154.t1	AT1G48210	70.718	362	105	1	1	362	1	361	0.0	529
MS.gene064154.t1	AT1G48210	70.718	362	105	1	1	362	1	361	0.0	529
MS.gene064154.t1	AT3G17410	76.261	337	80	0	26	362	26	362	0.0	512
MS.gene064154.t1	AT3G17410	76.261	337	80	0	26	362	26	362	0.0	512
MS.gene064154.t1	AT2G47060	65.570	395	99	5	1	359	1	394	1.18e-179	504
MS.gene064154.t1	AT2G47060	71.350	363	99	4	1	359	1	362	8.21e-178	498
MS.gene064154.t1	AT2G47060	71.350	363	99	4	1	359	1	362	8.21e-178	498
MS.gene064154.t1	AT3G62220	70.571	350	103	0	1	350	1	350	5.54e-176	493

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Find 88 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCACTCTTTGAAGAG+AGG	0.596344	8.4:+11000252	None:intergenic
AAAGGAGATTTACCGCCGTT+AGG	0.533083	8.4:+11001672	None:intergenic
AACATACTTCTATTTGAGGA+CGG	0.597225	8.4:-11000636	MS.gene064154:CDS
AACCAAAGGTTCCAAGAACA+CGG	0.583305	8.4:+11000544	None:intergenic
AACCAGGTCAAGTTCTGTCA+TGG	0.525020	8.4:-11000758	MS.gene064154:CDS
AACCATGTAGAATATCATGA+AGG	0.535938	8.4:+11000919	None:intergenic
AAGACGTGCGGCTGCATCAG+GGG	0.565018	8.4:+11000575	None:intergenic
AAGAGTGATGTTTACAGTTT+TGG	0.230925	8.4:-11000242	MS.gene064154:CDS
AATAGGATCATGGGTTGCTT+TGG	0.351984	8.4:-11001759	None:intergenic
AATTACCTTTGCAACTGACT+TGG	0.490782	8.4:+10999777	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATACTTCTATTTGAGGA+CGG	-	chr8.4:11000645-11000664	MS.gene064154:CDS	30.0%
AACCATGTAGAATATCATGA+AGG	+	chr8.4:11000365-11000384	None:intergenic	30.0%
AAGAATTTCTTTCTCAGGTT+CGG	-	chr8.4:11000138-11000157	MS.gene064154:intron	30.0%
AATGAAGAGTGATACTGATA+TGG	+	chr8.4:11000408-11000427	None:intergenic	30.0%
ACCATGTAGAATATCATGAA+GGG	+	chr8.4:11000364-11000383	None:intergenic	30.0%
ACTGATATGGTATTACTAGT+AGG	+	chr8.4:11000395-11000414	None:intergenic	30.0%
CCTTGAATATCTTCATGAAA+AGG	-	chr8.4:11000584-11000603	MS.gene064154:CDS	30.0%
GAAAGAGTTAAAATTGCTGT+TGG	-	chr8.4:11000549-11000568	MS.gene064154:CDS	30.0%
GAACGAGTATTATTCATTAG+AGG	+	chr8.4:11001722-11001741	None:intergenic	30.0%
TATACTCATTGAGTCTAAAG+TGG	+	chr8.4:11000902-11000921	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	10999531	11001772	10999531	ID=MS.gene064154
chr8.4	mRNA	10999531	11001772	10999531	ID=MS.gene064154.t1;Parent=MS.gene064154
chr8.4	exon	11001685	11001772	11001685	ID=MS.gene064154.t1.exon1;Parent=MS.gene064154.t1
chr8.4	CDS	11001685	11001772	11001685	ID=cds.MS.gene064154.t1;Parent=MS.gene064154.t1
chr8.4	exon	11001149	11001396	11001149	ID=MS.gene064154.t1.exon2;Parent=MS.gene064154.t1
chr8.4	CDS	11001149	11001396	11001149	ID=cds.MS.gene064154.t1;Parent=MS.gene064154.t1
chr8.4	exon	11000922	11001048	11000922	ID=MS.gene064154.t1.exon3;Parent=MS.gene064154.t1
chr8.4	CDS	11000922	11001048	11000922	ID=cds.MS.gene064154.t1;Parent=MS.gene064154.t1
chr8.4	exon	11000531	11000804	11000531	ID=MS.gene064154.t1.exon4;Parent=MS.gene064154.t1
chr8.4	CDS	11000531	11000804	11000531	ID=cds.MS.gene064154.t1;Parent=MS.gene064154.t1
chr8.4	exon	11000160	11000292	11000160	ID=MS.gene064154.t1.exon5;Parent=MS.gene064154.t1
chr8.4	CDS	11000160	11000292	11000160	ID=cds.MS.gene064154.t1;Parent=MS.gene064154.t1
chr8.4	exon	10999783	10999869	10999783	ID=MS.gene064154.t1.exon6;Parent=MS.gene064154.t1
chr8.4	CDS	10999783	10999869	10999783	ID=cds.MS.gene064154.t1;Parent=MS.gene064154.t1
chr8.4	exon	10999531	10999665	10999531	ID=MS.gene064154.t1.exon7;Parent=MS.gene064154.t1
chr8.4	CDS	10999531	10999665	10999531	ID=cds.MS.gene064154.t1;Parent=MS.gene064154.t1

Gene Sequence

>MS.gene064154

ATGGGTTGCTTTGGATTCTGCAAAGAGAATGATGCTTATACTACTGCTGACAACAAAGGAATCTTCATGCAAACCAATCCTAACGGCGGTAAATCTCCTTTACAATTTTCTGCTTTAAGATTTATACAAGTCATAGTCATGATCTGAAACATAAATTAAGTTTGCATAGCTTTTATCTGTAGTCTTGCAAGTTCTTTTACTAGAAAATTTTCATCTTTACATTTTACATGTTTCTTATAGTTTTTTCTATGCCATTTTCAAGTGATCTGCTTCAATTGTTCAAATTGAGATGTTCCAAAAATTGCCAGTCTTTGTAGTTGTATTATATTAGCACTATAATTGTATTTCATTTTGATTCAATTTTCATACAATGCAGGGAACACCAGTTATCATGGCAGACACACTGCAGTAACTGTTCCTCGGCCCATAAATCTCCAACCTATTTCTGTCCCTTCCATTACAGTAGATGAACTGAGGTCTTTGACAGATAATTTTGGTACAAAAACTTTCGTTGGTGAAGGTGCATATGGGAAAGTGTATCGTGCCACATTGAAAAATGGACGTGAAGTGGCAATTAAAAAGTTGGATTCCAGTAAGCAACCAGACCAAGAATTTCTTTCTCAGGTTCGGTTCAACAGTTACAACTTTCTATAAGACAATCAAAGTAACATCATATTGTATCTCCCTTCAGTGCTTTAAACTTATAATTCTTAACATAACACAGGTCTCCATCGTATCAAGGCTAAAGCACGAAAACGTTGTTGAGCTTGTTAATTATTGTGTTGATGGTCCTTTGCGTGCCCTTGCATACGAGTATGCTCCTAATGGATCCCTTCATGATATTCTACATGGTTAGTCACTCCTACTAGTAATACCATATCAGTATCACTCTTCATTTTATGTATGTTATAAAAAAAATATTCACATTAGTGTATTGTGCAATTAATTTAACATAATTTCGGATACAGGACGCAAAGGTGTCAAGGGTGCAGAACCAGGTCAAGTTCTGTCATGGGCTGAAAGAGTTAAAATTGCTGTTGGAGCAGCCAGAGGCCTTGAATATCTTCATGAAAAGGCAGAGGTTCATATTGTTCATCGTTACATTAAGTCTAGTAACATACTTCTATTTGAGGACGGCATTGCAAAGATTGCTGATTTTGATCTGTCGAATCAAGCCCCTGATGCAGCCGCACGTCTTCATTCTACCCGTGTTCTTGGAACCTTTGGTTATCATGCTCCAGAGTAAGTTATTTCTGGATGCCTGACTTCTTTTTTTCAGTTTAATTGATATTAATTGGTTGACGTTAGAGATTAAAAGTAACTTAGTAATATGTGTGGTATGTGGTCAGCGATGTAGTGAACAACAATCCACTTTAGACTCAATGAGTATAAATTGGTTCCGTGTTGGTCTCCTACTACATTTTACTTTTACAGTTGTGGTTTTTAAGAACTAAAAATGGCTTGATTTTTTGTATGACAGATATGCAATGACTGGAAACCTCTCTTCAAAGAGTGATGTTTACAGTTTTGGAGTTATACTGTTGGAACTCTTAACTGGGCGTAAACCCGTTGATCATACACTTCCCCGAGGACAACAAAGCCTTGTGACCTGGGTATGATATCATTATTTTTCTCTCTTTCTGTTAATGATTTGATTTATATGCACCGTTGGTATAATGATTTTTTTTGTAGTGTCAATCATAATTGTCAGATCATTAAAAACATTTGACTTTAATCATAATAACTTCTAAAGTCACACAAATGATTGATTGTGATTTGTTGATAGCACAAAACTGTCTGTTTACACTGACAGTGCATCAAAATTAAACTTTTCATTTGTATGTCTTGTTCCCTTTTTATTGAATTTTACTCAATGTGATCTTTGTTTGTTGGATTTTATCAGGCAACACCAAAGCTTAGTGAAGATAAGGTGAAGCAGTGTGTTGATGTTAGATTAAAGGGAGAGTACCCTTCCAAGTCAGTTGCAAAGGTAATTTAATTTGGTTACATTTCCATTTTGTAGATGAAATGTTGTTATTGAATGCAATTTGTTTGTTATAATATAGTTTTCATTGATTTGTTGTACTTGTTGTTTTGTTTGCAAAAGTTGGCTGCTGTTGCTGCATTGTGTGTTCAATATGAAGCCGAGTTTCGACCAAATATGAGCATCATTGTCAAAGCTTTACAGCCTCTAATGAATAATACTCGTTCTTCTCAACCAAGGGAACCACGCAACTTGTAA

Protein sequence

>MS.gene064154.t1

MGCFGFCKENDAYTTADNKGIFMQTNPNGGNTSYHGRHTAVTVPRPINLQPISVPSITVDELRSLTDNFGTKTFVGEGAYGKVYRATLKNGREVAIKKLDSSKQPDQEFLSQVSIVSRLKHENVVELVNYCVDGPLRALAYEYAPNGSLHDILHGRKGVKGAEPGQVLSWAERVKIAVGAARGLEYLHEKAEVHIVHRYIKSSNILLFEDGIAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGNLSSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVRLKGEYPSKSVAKLAAVAALCVQYEAEFRPNMSIIVKALQPLMNNTRSSQPREPRNL