Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06424.t1 | RHN69913.1 | 98.9 | 175 | 2 | 0 | 1 | 175 | 1 | 175 | 2.40E-94 | 354.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06424.t1 | A0A072V1M0 | 98.9 | 175 | 2 | 0 | 1 | 175 | 32 | 206 | 1.7e-94 | 354.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06424.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06424.t1 | MTR_3g095960 | 98.857 | 175 | 2 | 0 | 1 | 175 | 1 | 175 | 1.80e-119 | 360 |
| MS.gene06424.t1 | MTR_3g095960 | 98.857 | 175 | 2 | 0 | 1 | 175 | 32 | 206 | 3.32e-119 | 360 |
| MS.gene06424.t1 | MTR_8g093480 | 51.351 | 185 | 63 | 5 | 1 | 175 | 1 | 168 | 2.58e-37 | 136 |
| MS.gene06424.t1 | MTR_8g093480 | 51.351 | 185 | 63 | 5 | 1 | 175 | 1 | 168 | 3.73e-37 | 135 |
| MS.gene06424.t1 | MTR_8g093480 | 55.118 | 127 | 43 | 3 | 59 | 175 | 3 | 125 | 1.14e-28 | 111 |
| MS.gene06424.t1 | MTR_8g093480 | 55.118 | 127 | 43 | 3 | 59 | 175 | 3 | 125 | 1.29e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAACTATTCTCACGATTT+TGG | 0.170219 | 3.2:-80071650 | None:intergenic |
| GGAGCCCTCCTCGTGGTTTC+AGG | 0.197192 | 3.2:+80071505 | MS.gene06424:CDS |
| TAGTTCAGAATGGGCTTATT+TGG | 0.226634 | 3.2:+80069087 | MS.gene06424:CDS |
| CGTGGTTTCAGGTGGGATTC+AGG | 0.255538 | 3.2:+80071516 | MS.gene06424:CDS |
| TCATCAAAGGAATCTTATTA+TGG | 0.303424 | 3.2:+80069145 | MS.gene06424:CDS |
| TTTGATGAAAATCCCGTAAC+AGG | 0.314545 | 3.2:-80069130 | None:intergenic |
| CAGGAGTTGATGGTAGAAAA+AGG | 0.366286 | 3.2:+80071535 | MS.gene06424:CDS |
| CACGAGGAGGGCTCCGACTC+CGG | 0.375893 | 3.2:-80071497 | None:intergenic |
| ACCAAAATCGTGAGAATAGT+TGG | 0.381560 | 3.2:+80071649 | MS.gene06424:CDS |
| TGACAAATTAAGACCTGTTA+CGG | 0.417902 | 3.2:+80069117 | MS.gene06424:CDS |
| CGGTCCTCTGCAGATGTTGC+TGG | 0.427388 | 3.2:+80069058 | MS.gene06424:CDS |
| AGGTGGGATTCAGGAGTTGA+TGG | 0.452955 | 3.2:+80071525 | MS.gene06424:CDS |
| GACAAATTAAGACCTGTTAC+GGG | 0.462443 | 3.2:+80069118 | MS.gene06424:CDS |
| GGTAGCAAGCAAATGCGGTC+TGG | 0.469238 | 3.2:+80069034 | MS.gene06424:CDS |
| GACCGCATTTGCTTGCTACC+AGG | 0.490417 | 3.2:-80069031 | None:intergenic |
| GCCCTCCTCGTGGTTTCAGG+TGG | 0.499663 | 3.2:+80071508 | MS.gene06424:CDS |
| CCAAAATCGTGAGAATAGTT+GGG | 0.505813 | 3.2:+80071650 | MS.gene06424:CDS |
| TGGTAGCAATAGTTCAGAAT+GGG | 0.505951 | 3.2:+80069078 | MS.gene06424:CDS |
| TCAGAATGGGCTTATTTGGA+AGG | 0.508080 | 3.2:+80069091 | MS.gene06424:CDS |
| CCCTCCTCGTGGTTTCAGGT+GGG | 0.508118 | 3.2:+80071509 | MS.gene06424:CDS |
| GAATCTTATTATGGAGGCAG+AGG | 0.523186 | 3.2:+80069154 | MS.gene06424:CDS |
| ATTGTTGACATGAGTGGAGC+TGG | 0.529969 | 3.2:+80068959 | None:intergenic |
| TTGCCAGGAACAGTCGGAGC+CGG | 0.539425 | 3.2:+80071478 | MS.gene06424:intron |
| AGAAGAGAATGGGACACTGA+TGG | 0.540407 | 3.2:+80069226 | MS.gene06424:CDS |
| CTGGTAGCAATAGTTCAGAA+TGG | 0.546984 | 3.2:+80069077 | MS.gene06424:CDS |
| GGAACAGTCGGAGCCGGAGT+CGG | 0.575027 | 3.2:+80071484 | MS.gene06424:intron |
| AGCTCTATTGTTGACATGAG+TGG | 0.576612 | 3.2:+80068953 | None:intergenic |
| GCTGTTGGAAAATGTAGAAG+AGG | 0.576715 | 3.2:+80071597 | MS.gene06424:CDS |
| TCAAAGGAATCTTATTATGG+AGG | 0.583027 | 3.2:+80069148 | MS.gene06424:CDS |
| CAGAAAGCACTCTTCAAAGT+GGG | 0.584050 | 3.2:+80068982 | MS.gene06424:CDS |
| TGATCATTGCCAGGAACAGT+CGG | 0.587729 | 3.2:+80071472 | MS.gene06424:intron |
| AATCGTGAGAATAGTTGGGA+AGG | 0.607787 | 3.2:+80071654 | MS.gene06424:CDS |
| GCAGAAAGCACTCTTCAAAG+TGG | 0.608415 | 3.2:+80068981 | MS.gene06424:CDS |
| GCAAGCAAATGCGGTCTGGA+CGG | 0.609119 | 3.2:+80069038 | MS.gene06424:CDS |
| ACACTGATGGAAGTTACAGC+AGG | 0.614680 | 3.2:+80069239 | MS.gene06424:CDS |
| GATGAGCATAAATTCTCACC+TGG | 0.639966 | 3.2:+80069013 | MS.gene06424:CDS |
| CACCTGGTAGCAAGCAAATG+CGG | 0.651152 | 3.2:+80069029 | MS.gene06424:CDS |
| CCAACAGCAAAATCTCTGCA+CGG | 0.656607 | 3.2:-80071582 | None:intergenic |
| CCCACCTGAAACCACGAGGA+GGG | 0.658576 | 3.2:-80071509 | None:intergenic |
| TGGAGGCAGAGGTTCAAATG+AGG | 0.658931 | 3.2:+80069165 | MS.gene06424:CDS |
| TCCCACCTGAAACCACGAGG+AGG | 0.671552 | 3.2:-80071510 | None:intergenic |
| GCTACCAGCAACATCTGCAG+AGG | 0.681868 | 3.2:-80069062 | None:intergenic |
| CGGAGTCGGAGCCCTCCTCG+TGG | 0.703718 | 3.2:+80071498 | MS.gene06424:CDS |
| GAATCCCACCTGAAACCACG+AGG | 0.757642 | 3.2:-80071513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTGATGATAATATTA+TGG | + | chr3.2:80071383-80071402 | MS.gene06424:intron | 10.0% |
| !! | AAGAAAGAAAGAAAAAAAAA+AGG | - | chr3.2:80070721-80070740 | None:intergenic | 15.0% |
| !!! | ACGAATAAAGTATTAATATT+TGG | - | chr3.2:80070821-80070840 | None:intergenic | 15.0% |
| !!! | TTCAAATGTTTAGTTTTTTA+GGG | - | chr3.2:80069679-80069698 | None:intergenic | 15.0% |
| !! | AACTAAACATTTGAAGAAAA+TGG | + | chr3.2:80069684-80069703 | MS.gene06424:intron | 20.0% |
| !! | ATATATACACTATACTCAAA+CGG | + | chr3.2:80071063-80071082 | MS.gene06424:intron | 20.0% |
| !! | ATCATCAATATATTTAACAG+TGG | - | chr3.2:80071376-80071395 | None:intergenic | 20.0% |
| !! | GGTAAAAATGGAAAAAAATA+GGG | + | chr3.2:80070618-80070637 | MS.gene06424:intron | 20.0% |
| !! | TTCTTGAATTAAAAACTCTA+TGG | - | chr3.2:80069210-80069229 | None:intergenic | 20.0% |
| !! | TTTAATTATCTGTCTTTACT+TGG | + | chr3.2:80071445-80071464 | MS.gene06424:intron | 20.0% |
| !! | TTTCTGAATATTGATATTGA+TGG | + | chr3.2:80069319-80069338 | MS.gene06424:intron | 20.0% |
| !!! | AAAAAAAAGGTGTATCTTTT+TGG | - | chr3.2:80070708-80070727 | None:intergenic | 20.0% |
| !!! | CTTCAAATGTTTAGTTTTTT+AGG | - | chr3.2:80069680-80069699 | None:intergenic | 20.0% |
| !!! | TCAAATGTTTAGTTTTTTAG+GGG | - | chr3.2:80069678-80069697 | None:intergenic | 20.0% |
| !!! | TTTTAATTCAAGAAGAGAAT+GGG | + | chr3.2:80069216-80069235 | MS.gene06424:CDS | 20.0% |
| !!! | TTTTCTTCATATTATACTGA+TGG | + | chr3.2:80069355-80069374 | MS.gene06424:intron | 20.0% |
| !!! | TTTTTAATTCAAGAAGAGAA+TGG | + | chr3.2:80069215-80069234 | MS.gene06424:CDS | 20.0% |
| ! | AAAATTCTAACAATGCAATC+TGG | + | chr3.2:80070575-80070594 | MS.gene06424:intron | 25.0% |
| ! | AAAATTTACAAAAATACCCC+CGG | + | chr3.2:80069473-80069492 | MS.gene06424:intron | 25.0% |
| ! | AGGAGATTAGAAATAGAATT+AGG | + | chr3.2:80070350-80070369 | MS.gene06424:intron | 25.0% |
| ! | AGTAAAAGAATGAGATTACA+AGG | + | chr3.2:80071038-80071057 | MS.gene06424:intron | 25.0% |
| ! | GCTTAAAATTGTAAAAGTTC+TGG | + | chr3.2:80070512-80070531 | MS.gene06424:intron | 25.0% |
| ! | GGGTAAAAATGGAAAAAAAT+AGG | + | chr3.2:80070617-80070636 | MS.gene06424:intron | 25.0% |
| ! | TATGTTCAAATTCACTATGT+AGG | + | chr3.2:80070993-80071012 | MS.gene06424:intron | 25.0% |
| ! | TCATCAAAGGAATCTTATTA+TGG | + | chr3.2:80069145-80069164 | MS.gene06424:CDS | 25.0% |
| ! | TTCAACACAAATATAGACAT+GGG | - | chr3.2:80071253-80071272 | None:intergenic | 25.0% |
| !! | AACCCTTAAAATTTTCAACA+AGG | - | chr3.2:80070073-80070092 | None:intergenic | 25.0% |
| !! | AAGACATTTTAAACATGTCT+TGG | + | chr3.2:80070844-80070863 | MS.gene06424:intron | 25.0% |
| !! | TAGTCAAAAAACGTGTTTTA+CGG | - | chr3.2:80069899-80069918 | None:intergenic | 25.0% |
| !!! | AAAACAACAGTTTTATCTTC+TGG | + | chr3.2:80071140-80071159 | MS.gene06424:intron | 25.0% |
| !!! | ACTTGTTTTAGGCTATAAAT+AGG | - | chr3.2:80069758-80069777 | None:intergenic | 25.0% |
| !!! | ATTTTAAGGGTTTGTATGAA+CGG | + | chr3.2:80070081-80070100 | MS.gene06424:intron | 25.0% |
| !!! | GGGTATTTTTGTAAATTTTG+CGG | - | chr3.2:80069472-80069491 | None:intergenic | 25.0% |
| !!! | GGTATTTTTGTAAATTTTGC+GGG | - | chr3.2:80069471-80069490 | None:intergenic | 25.0% |
| !!! | GTATTTTTGTAAATTTTGCG+GGG | - | chr3.2:80069470-80069489 | None:intergenic | 25.0% |
| !!! | TATTTTTGTAAATTTTGCGG+GGG | - | chr3.2:80069469-80069488 | None:intergenic | 25.0% |
| AAAAAGAGAGCCATTAATGT+AGG | - | chr3.2:80069833-80069852 | None:intergenic | 30.0% | |
| AAGATTATGTGATAGTCACA+TGG | + | chr3.2:80070939-80070958 | MS.gene06424:intron | 30.0% | |
| ACAAATAAAGAAGCAGAACA+TGG | - | chr3.2:80071221-80071240 | None:intergenic | 30.0% | |
| ACTCTTAGGAGATTAGAATT+AGG | + | chr3.2:80070322-80070341 | MS.gene06424:intron | 30.0% | |
| ACTGTCAATGAAAACATTAG+TGG | + | chr3.2:80069792-80069811 | MS.gene06424:intron | 30.0% | |
| CAAAAATATAAACTAGCTCG+AGG | - | chr3.2:80071316-80071335 | None:intergenic | 30.0% | |
| CTTCAACACAAATATAGACA+TGG | - | chr3.2:80071254-80071273 | None:intergenic | 30.0% | |
| GATATAACTGTTAGACTACT+AGG | - | chr3.2:80071113-80071132 | None:intergenic | 30.0% | |
| TCAAAGGAATCTTATTATGG+AGG | + | chr3.2:80069148-80069167 | MS.gene06424:CDS | 30.0% | |
| TGACAAATTAAGACCTGTTA+CGG | + | chr3.2:80069117-80069136 | MS.gene06424:CDS | 30.0% | |
| ! | ATCTTTCATGAAGTATCCAA+TGG | - | chr3.2:80070924-80070943 | None:intergenic | 30.0% |
| ! | TGTTCTGCTTCTTTATTTGT+AGG | + | chr3.2:80071221-80071240 | MS.gene06424:intron | 30.0% |
| !! | ATGAAGGTATTTGTTGAAGA+TGG | + | chr3.2:80069729-80069748 | MS.gene06424:intron | 30.0% |
| !! | ATTATACTGATGGTTTGTTG+TGG | + | chr3.2:80069365-80069384 | MS.gene06424:intron | 30.0% |
| !! | TTATACTGATGGTTTGTTGT+GGG | + | chr3.2:80069366-80069385 | MS.gene06424:intron | 30.0% |
| !!! | GGCCTTGTTGAAAATTTTAA+GGG | + | chr3.2:80070068-80070087 | MS.gene06424:intron | 30.0% |
| !!! | TTTTTTTCCATTTTTACCCC+TGG | - | chr3.2:80070616-80070635 | None:intergenic | 30.0% |
| AAAGCACATAACATCTAGTC+CGG | - | chr3.2:80069537-80069556 | None:intergenic | 35.0% | |
| AATTGCAGGGTTCATATGAA+CGG | + | chr3.2:80069625-80069644 | MS.gene06424:intron | 35.0% | |
| ACCAAAATCGTGAGAATAGT+TGG | + | chr3.2:80071649-80071668 | MS.gene06424:CDS | 35.0% | |
| AGCAGATTGTTAGTGATATC+CGG | + | chr3.2:80069501-80069520 | MS.gene06424:intron | 35.0% | |
| AGTAGTGAAGTGAAGAATGA+AGG | + | chr3.2:80069713-80069732 | MS.gene06424:intron | 35.0% | |
| ATATCACTAACAATCTGCTC+CGG | - | chr3.2:80069500-80069519 | None:intergenic | 35.0% | |
| ATTGACAGTACTAATGACCT+AGG | - | chr3.2:80069781-80069800 | None:intergenic | 35.0% | |
| CCAAAATCGTGAGAATAGTT+GGG | + | chr3.2:80071650-80071669 | MS.gene06424:CDS | 35.0% | |
| CTAAAGAACTTGCACTTTAC+TGG | + | chr3.2:80070741-80070760 | MS.gene06424:intron | 35.0% | |
| CTTGAAAACAATGAATACCG+CGG | - | chr3.2:80071339-80071358 | None:intergenic | 35.0% | |
| GACAAATTAAGACCTGTTAC+GGG | + | chr3.2:80069118-80069137 | MS.gene06424:CDS | 35.0% | |
| GAGATTAGAATTAGGCTCTT+AGG | + | chr3.2:80070330-80070349 | MS.gene06424:intron | 35.0% | |
| GGTTTGGAAGGCTATTTATA+GGG | - | chr3.2:80069957-80069976 | None:intergenic | 35.0% | |
| GTAGTATTGTTGGGATCTAA+TGG | + | chr3.2:80070780-80070799 | MS.gene06424:intron | 35.0% | |
| GTGTCTTTCTTTGATGTCAA+GGG | + | chr3.2:80069560-80069579 | MS.gene06424:intron | 35.0% | |
| TATAGCCTAAAACAAGTCCT+AGG | + | chr3.2:80069761-80069780 | MS.gene06424:intron | 35.0% | |
| TGGTAGCAATAGTTCAGAAT+GGG | + | chr3.2:80069078-80069097 | MS.gene06424:CDS | 35.0% | |
| TGTGTCTTTCTTTGATGTCA+AGG | + | chr3.2:80069559-80069578 | MS.gene06424:intron | 35.0% | |
| TTTGATGAAAATCCCGTAAC+AGG | - | chr3.2:80069133-80069152 | None:intergenic | 35.0% | |
| ! | AAAAAACGTGTTTTACGGTG+GGG | - | chr3.2:80069894-80069913 | None:intergenic | 35.0% |
| ! | ACTACTAGGTTTGAGGTTAT+TGG | - | chr3.2:80071099-80071118 | None:intergenic | 35.0% |
| ! | ACTATACTCAAACGGACTTA+TGG | + | chr3.2:80071071-80071090 | MS.gene06424:intron | 35.0% |
| ! | CAAAAAACGTGTTTTACGGT+GGG | - | chr3.2:80069895-80069914 | None:intergenic | 35.0% |
| ! | CTACTAGGTTTGAGGTTATT+GGG | - | chr3.2:80071098-80071117 | None:intergenic | 35.0% |
| ! | CTATACTCAAACGGACTTAT+GGG | + | chr3.2:80071072-80071091 | MS.gene06424:intron | 35.0% |
| ! | TAGAATTTTGCAGATGTGTC+CGG | - | chr3.2:80070564-80070583 | None:intergenic | 35.0% |
| ! | TAGTTCAGAATGGGCTTATT+TGG | + | chr3.2:80069087-80069106 | MS.gene06424:CDS | 35.0% |
| ! | TCAAAAAACGTGTTTTACGG+TGG | - | chr3.2:80069896-80069915 | None:intergenic | 35.0% |
| ! | TGTTACGGGATTTTCATCAA+AGG | + | chr3.2:80069132-80069151 | MS.gene06424:CDS | 35.0% |
| !! | AATGACCTAGGACTTGTTTT+AGG | - | chr3.2:80069769-80069788 | None:intergenic | 35.0% |
| !! | GCTAGTTTATATTTTTGCCG+CGG | + | chr3.2:80071319-80071338 | MS.gene06424:intron | 35.0% |
| !!! | CCATTCCGGATTTTAAAATC+CGG | + | chr3.2:80070542-80070561 | MS.gene06424:intron | 35.0% |
| !!! | GGGCCTTGTTGAAAATTTTA+AGG | + | chr3.2:80070067-80070086 | MS.gene06424:intron | 35.0% |
| !!! | TGTGTCCGGATTTTAAAATC+CGG | - | chr3.2:80070550-80070569 | None:intergenic | 35.0% |
| AAGAACTTGCACTTTACTGG+AGG | + | chr3.2:80070744-80070763 | MS.gene06424:intron | 40.0% | |
| AATTGCATTGCAGCTTGTGT+GGG | - | chr3.2:80069609-80069628 | None:intergenic | 40.0% | |
| ACAAGGCCCTTATCTATGAA+AGG | - | chr3.2:80070056-80070075 | None:intergenic | 40.0% | |
| ACCGTCCAAACCTACATTAA+TGG | + | chr3.2:80069820-80069839 | MS.gene06424:intron | 40.0% | |
| ATAGCAGTGGTTAGACTCTT+AGG | + | chr3.2:80070308-80070327 | MS.gene06424:intron | 40.0% | |
| ATGGTTGTAGAAGGAAGAAG+AGG | - | chr3.2:80070017-80070036 | None:intergenic | 40.0% | |
| CACATGGCATCTATTTGATC+TGG | + | chr3.2:80070955-80070974 | MS.gene06424:intron | 40.0% | |
| CATAGCAGTAGTTTCCCTAT+TGG | - | chr3.2:80070279-80070298 | None:intergenic | 40.0% | |
| CTGGTAGCAATAGTTCAGAA+TGG | + | chr3.2:80069077-80069096 | MS.gene06424:CDS | 40.0% | |
| CTGTTAGACTACTAGGTTTG+AGG | - | chr3.2:80071106-80071125 | None:intergenic | 40.0% | |
| CTTGTGTGGGGTTCATATAA+CGG | - | chr3.2:80069596-80069615 | None:intergenic | 40.0% | |
| GAATCTTATTATGGAGGCAG+AGG | + | chr3.2:80069154-80069173 | MS.gene06424:CDS | 40.0% | |
| GAGAGCCATTAATGTAGGTT+TGG | - | chr3.2:80069828-80069847 | None:intergenic | 40.0% | |
| GATATCCGGAAAACGAAATC+CGG | + | chr3.2:80069515-80069534 | MS.gene06424:intron | 40.0% | |
| GATGAGCATAAATTCTCACC+TGG | + | chr3.2:80069013-80069032 | MS.gene06424:CDS | 40.0% | |
| GCAATCTGGAAAACGAAATC+CGG | + | chr3.2:80070589-80070608 | MS.gene06424:intron | 40.0% | |
| GCCATTAATGTAGGTTTGGA+CGG | - | chr3.2:80069824-80069843 | None:intergenic | 40.0% | |
| GCTGTTGGAAAATGTAGAAG+AGG | + | chr3.2:80071597-80071616 | MS.gene06424:CDS | 40.0% | |
| GGGTTTGGAAGGCTATTTAT+AGG | - | chr3.2:80069958-80069977 | None:intergenic | 40.0% | |
| GTGTACTCGGTAGTATTGTT+GGG | + | chr3.2:80070771-80070790 | MS.gene06424:intron | 40.0% | |
| GTTTGTATGAACGGTCAATG+AGG | + | chr3.2:80070090-80070109 | MS.gene06424:intron | 40.0% | |
| TATCTATGAAAGGCCAACGA+TGG | - | chr3.2:80070046-80070065 | None:intergenic | 40.0% | |
| TATGTCCTATCACATAGCAG+TGG | + | chr3.2:80070295-80070314 | MS.gene06424:intron | 40.0% | |
| TCTAACCACTGCTATGTGAT+AGG | - | chr3.2:80070303-80070322 | None:intergenic | 40.0% | |
| TCTTCTTCCTTCTACAACCA+TGG | + | chr3.2:80070016-80070035 | MS.gene06424:intron | 40.0% | |
| TGATGGTAGAAAAAGGACGA+GGG | + | chr3.2:80071542-80071561 | MS.gene06424:CDS | 40.0% | |
| TGGAAAACCATGGTTGTAGA+AGG | - | chr3.2:80070026-80070045 | None:intergenic | 40.0% | |
| TGGAAGGCTATTTATAGGGA+GGG | - | chr3.2:80069953-80069972 | None:intergenic | 40.0% | |
| TGTGTACTCGGTAGTATTGT+TGG | + | chr3.2:80070770-80070789 | MS.gene06424:intron | 40.0% | |
| TTGGAAGGCTATTTATAGGG+AGG | - | chr3.2:80069954-80069973 | None:intergenic | 40.0% | |
| ! | CCCAACTATTCTCACGATTT+TGG | - | chr3.2:80071653-80071672 | None:intergenic | 40.0% |
| ! | TCAGAATGGGCTTATTTGGA+AGG | + | chr3.2:80069091-80069110 | MS.gene06424:CDS | 40.0% |
| ! | TTGATGGTAGAAAAAGGACG+AGG | + | chr3.2:80071541-80071560 | MS.gene06424:CDS | 40.0% |
| !! | CAGAAAGCACTCTTCAAAGT+GGG | + | chr3.2:80068982-80069001 | MS.gene06424:CDS | 40.0% |
| !! | CAGGAGTTGATGGTAGAAAA+AGG | + | chr3.2:80071535-80071554 | MS.gene06424:CDS | 40.0% |
| !! | CGTTGGCCTTTCATAGATAA+GGG | + | chr3.2:80070047-80070066 | MS.gene06424:intron | 40.0% |
| !! | CTTGGATTTTGATCATTGCC+AGG | + | chr3.2:80071463-80071482 | MS.gene06424:intron | 40.0% |
| !! | GTTCTGGAAGAAAACCATTC+CGG | + | chr3.2:80070528-80070547 | MS.gene06424:intron | 40.0% |
| !! | GTTCTTAGATTGGTCTGTCT+GGG | + | chr3.2:80070169-80070188 | MS.gene06424:intron | 40.0% |
| !! | TCGTTGGCCTTTCATAGATA+AGG | + | chr3.2:80070046-80070065 | MS.gene06424:intron | 40.0% |
| !!! | ACCTGCTCCAGTCATTTTTA+GGG | - | chr3.2:80069285-80069304 | None:intergenic | 40.0% |
| !!! | CCGGATTTTAAAATCCGGAA+TGG | - | chr3.2:80070545-80070564 | None:intergenic | 40.0% |
| AAGGCTATTTATAGGGAGGG+TGG | - | chr3.2:80069950-80069969 | None:intergenic | 45.0% | |
| ACAAGCTGCAATGCAATTGC+AGG | + | chr3.2:80069611-80069630 | MS.gene06424:intron | 45.0% | |
| ACACTGATGGAAGTTACAGC+AGG | + | chr3.2:80069239-80069258 | MS.gene06424:CDS | 45.0% | |
| AGAAGAGAATGGGACACTGA+TGG | + | chr3.2:80069226-80069245 | MS.gene06424:CDS | 45.0% | |
| AGCAGTAGTTTCCCTATTGG+AGG | - | chr3.2:80070276-80070295 | None:intergenic | 45.0% | |
| AGGATGGTGTGAGAAATGGT+GGG | - | chr3.2:80069979-80069998 | None:intergenic | 45.0% | |
| AGGCTATTTATAGGGAGGGT+GGG | - | chr3.2:80069949-80069968 | None:intergenic | 45.0% | |
| ATGCATGCAATCACAGCCAT+TGG | + | chr3.2:80070905-80070924 | MS.gene06424:intron | 45.0% | |
| ATTGCATTGCAGCTTGTGTG+GGG | - | chr3.2:80069608-80069627 | None:intergenic | 45.0% | |
| CAACAATGACCATGACACCA+CGG | + | chr3.2:80069649-80069668 | MS.gene06424:intron | 45.0% | |
| CAAGCTGCAATGCAATTGCA+GGG | + | chr3.2:80069612-80069631 | MS.gene06424:intron | 45.0% | |
| CAATTGCATTGCAGCTTGTG+TGG | - | chr3.2:80069610-80069629 | None:intergenic | 45.0% | |
| CCAACAGCAAAATCTCTGCA+CGG | - | chr3.2:80071585-80071604 | None:intergenic | 45.0% | |
| GCAGTAGTTTCCCTATTGGA+GGG | - | chr3.2:80070275-80070294 | None:intergenic | 45.0% | |
| GGTCAGTGTGGTTCTTAGAT+TGG | + | chr3.2:80070159-80070178 | MS.gene06424:intron | 45.0% | |
| GTATGAACGGTCAATGAGGA+TGG | + | chr3.2:80070094-80070113 | MS.gene06424:intron | 45.0% | |
| GTCAGTCCCCTAAAAATGAC+TGG | + | chr3.2:80069275-80069294 | MS.gene06424:CDS | 45.0% | |
| GTTGTAGAAGGAAGAAGAGG+AGG | - | chr3.2:80070014-80070033 | None:intergenic | 45.0% | |
| TGATCATTGCCAGGAACAGT+CGG | + | chr3.2:80071472-80071491 | MS.gene06424:intron | 45.0% | |
| TTACAAAAATACCCCCGGTC+CGG | + | chr3.2:80069478-80069497 | MS.gene06424:intron | 45.0% | |
| ! | AAAGAAGTGCGGTTCATCTG+GGG | + | chr3.2:80070128-80070147 | MS.gene06424:intron | 45.0% |
| ! | CAAAGAAGTGCGGTTCATCT+GGG | + | chr3.2:80070127-80070146 | MS.gene06424:intron | 45.0% |
| ! | CAACCATGGTTTTCCATCGT+TGG | + | chr3.2:80070030-80070049 | MS.gene06424:intron | 45.0% |
| ! | CTAGTCCGGATTTCGTTTTC+CGG | - | chr3.2:80069523-80069542 | None:intergenic | 45.0% |
| !! | GCAGAAAGCACTCTTCAAAG+TGG | + | chr3.2:80068981-80069000 | MS.gene06424:CDS | 45.0% |
| !! | GGTTCTTAGATTGGTCTGTC+TGG | + | chr3.2:80070168-80070187 | MS.gene06424:intron | 45.0% |
| !! | TTCCATTTTTACCCCTGGTC+CGG | - | chr3.2:80070611-80070630 | None:intergenic | 45.0% |
| !!! | CCTGCTCCAGTCATTTTTAG+GGG | - | chr3.2:80069284-80069303 | None:intergenic | 45.0% |
| !!! | GACCTGCTCCAGTCATTTTT+AGG | - | chr3.2:80069286-80069305 | None:intergenic | 45.0% |
| !!! | TAGTTTTTTAGGGGTGTCCG+TGG | - | chr3.2:80069669-80069688 | None:intergenic | 45.0% |
| ACTAACAATCTGCTCCGGAC+CGG | - | chr3.2:80069495-80069514 | None:intergenic | 50.0% | |
| AGAAAAAGGACGAGGGTTGG+AGG | + | chr3.2:80071549-80071568 | MS.gene06424:CDS | 50.0% | |
| AGAAGAGAACAATGCCCCTG+AGG | - | chr3.2:80070220-80070239 | None:intergenic | 50.0% | |
| AGAAGGAAGAAGAGGAGGAG+AGG | - | chr3.2:80070009-80070028 | None:intergenic | 50.0% | |
| AGGCCAACGATGGAAAACCA+TGG | - | chr3.2:80070036-80070055 | None:intergenic | 50.0% | |
| AGGGTGGGTCAAAAACGGTT+GGG | - | chr3.2:80069934-80069953 | None:intergenic | 50.0% | |
| AGGTGGGATTCAGGAGTTGA+TGG | + | chr3.2:80071525-80071544 | MS.gene06424:CDS | 50.0% | |
| ATCCGGACCAGGGGTAAAAA+TGG | + | chr3.2:80070606-80070625 | MS.gene06424:intron | 50.0% | |
| ATCTGCGCTGCAAAGAAGTG+CGG | + | chr3.2:80070117-80070136 | MS.gene06424:intron | 50.0% | |
| CACCTGGTAGCAAGCAAATG+CGG | + | chr3.2:80069029-80069048 | MS.gene06424:CDS | 50.0% | |
| CCCCTAAAAATGACTGGAGC+AGG | + | chr3.2:80069281-80069300 | MS.gene06424:CDS | 50.0% | |
| GAAAACGAAATCCGGACCAG+GGG | + | chr3.2:80070597-80070616 | MS.gene06424:intron | 50.0% | |
| GAAGAGAACAATGCCCCTGA+GGG | - | chr3.2:80070219-80070238 | None:intergenic | 50.0% | |
| GAAGGAAGAAGAGGAGGAGA+GGG | - | chr3.2:80070008-80070027 | None:intergenic | 50.0% | |
| GAGGATGGTGTGAGAAATGG+TGG | - | chr3.2:80069980-80069999 | None:intergenic | 50.0% | |
| GGAAAACGAAATCCGGACCA+GGG | + | chr3.2:80070596-80070615 | MS.gene06424:intron | 50.0% | |
| GGAGAGGATGGTGTGAGAAA+TGG | - | chr3.2:80069983-80070002 | None:intergenic | 50.0% | |
| GGATGGTGTGAGAAATGGTG+GGG | - | chr3.2:80069978-80069997 | None:intergenic | 50.0% | |
| GGGTTGGGTCAAAAACGGTT+GGG | - | chr3.2:80069874-80069893 | None:intergenic | 50.0% | |
| GGTAGAAAAAGGACGAGGGT+TGG | + | chr3.2:80071546-80071565 | MS.gene06424:CDS | 50.0% | |
| TACTGGAGGAGCTGTGTACT+CGG | + | chr3.2:80070758-80070777 | MS.gene06424:intron | 50.0% | |
| TAGGGAGGGTGGGTCAAAAA+CGG | - | chr3.2:80069939-80069958 | None:intergenic | 50.0% | |
| TGGAAAACGAAATCCGGACC+AGG | + | chr3.2:80070595-80070614 | MS.gene06424:intron | 50.0% | |
| TGGAGGCAGAGGTTCAAATG+AGG | + | chr3.2:80069165-80069184 | MS.gene06424:CDS | 50.0% | |
| TGGCTGTGATTGCATGCATC+AGG | - | chr3.2:80070904-80070923 | None:intergenic | 50.0% | |
| TTGGGTCAAAAACGGTTGGG+AGG | - | chr3.2:80069871-80069890 | None:intergenic | 50.0% | |
| TTTCCCTATTGGAGGGCAAC+CGG | - | chr3.2:80070268-80070287 | None:intergenic | 50.0% | |
| ! | AACGTGTTTTACGGTGGGGT+TGG | - | chr3.2:80069890-80069909 | None:intergenic | 50.0% |
| ! | AAGAAGTGCGGTTCATCTGG+GGG | + | chr3.2:80070129-80070148 | MS.gene06424:intron | 50.0% |
| ! | ACGTGTTTTACGGTGGGGTT+GGG | - | chr3.2:80069889-80069908 | None:intergenic | 50.0% |
| ! | GAGAAATGGTGGGGTTTGGA+AGG | - | chr3.2:80069969-80069988 | None:intergenic | 50.0% |
| ! | GCAAAGAAGTGCGGTTCATC+TGG | + | chr3.2:80070126-80070145 | MS.gene06424:intron | 50.0% |
| ! | GTGTGAGAAATGGTGGGGTT+TGG | - | chr3.2:80069973-80069992 | None:intergenic | 50.0% |
| !! | CCGTGCAGAGATTTTGCTGT+TGG | + | chr3.2:80071582-80071601 | MS.gene06424:CDS | 50.0% |
| !! | CTTCTGGAGTAGAGCTCAGA+AGG | + | chr3.2:80071156-80071175 | MS.gene06424:intron | 50.0% |
| AAAATAGGGCGCGCGAGGAA+AGG | + | chr3.2:80070632-80070651 | MS.gene06424:intron | 55.0% | |
| AATGCCCCTGAGGGAGGTAA+GGG | - | chr3.2:80070210-80070229 | None:intergenic | 55.0% | |
| ATGACTGGAGCAGGTCAGTC+TGG | + | chr3.2:80069290-80069309 | MS.gene06424:intron | 55.0% | |
| CGGTGGGGTTGGGTCAAAAA+CGG | - | chr3.2:80069879-80069898 | None:intergenic | 55.0% | |
| CTAACAATCTGCTCCGGACC+GGG | - | chr3.2:80069494-80069513 | None:intergenic | 55.0% | |
| GAAGAAGAGGAGGAGAGGGT+GGG | - | chr3.2:80070004-80070023 | None:intergenic | 55.0% | |
| GAATCCCACCTGAAACCACG+AGG | - | chr3.2:80071516-80071535 | None:intergenic | 55.0% | |
| GAGGGTGGGTCAAAAACGGT+TGG | - | chr3.2:80069935-80069954 | None:intergenic | 55.0% | |
| GCAAGCAAATGCGGTCTGGA+CGG | + | chr3.2:80069038-80069057 | MS.gene06424:CDS | 55.0% | |
| GCTACCAGCAACATCTGCAG+AGG | - | chr3.2:80069065-80069084 | None:intergenic | 55.0% | |
| GGAAAAAAATAGGGCGCGCG+AGG | + | chr3.2:80070627-80070646 | MS.gene06424:intron | 55.0% | |
| GGGGTTGGGTCAAAAACGGT+TGG | - | chr3.2:80069875-80069894 | None:intergenic | 55.0% | |
| GGTAGCAAGCAAATGCGGTC+TGG | + | chr3.2:80069034-80069053 | MS.gene06424:CDS | 55.0% | |
| GGTTCATCTGGGGGTCATGT+GGG | + | chr3.2:80070138-80070157 | MS.gene06424:intron | 55.0% | |
| GTGGGTCAAAAACGGTTGGG+AGG | - | chr3.2:80069931-80069950 | None:intergenic | 55.0% | |
| TAACAATCTGCTCCGGACCG+GGG | - | chr3.2:80069493-80069512 | None:intergenic | 55.0% | |
| ! | CGTGGTTTCAGGTGGGATTC+AGG | + | chr3.2:80071516-80071535 | MS.gene06424:CDS | 55.0% |
| ! | GACCGCATTTGCTTGCTACC+AGG | - | chr3.2:80069034-80069053 | None:intergenic | 55.0% |
| AACAATCTGCTCCGGACCGG+GGG | - | chr3.2:80069492-80069511 | None:intergenic | 60.0% | |
| AGCACCCCTTACCTCCCTCA+GGG | + | chr3.2:80070202-80070221 | MS.gene06424:intron | 60.0% | |
| ATGCCCCTGAGGGAGGTAAG+GGG | - | chr3.2:80070209-80070228 | None:intergenic | 60.0% | |
| CAATGCCCCTGAGGGAGGTA+AGG | - | chr3.2:80070211-80070230 | None:intergenic | 60.0% | |
| CCCACCTGAAACCACGAGGA+GGG | - | chr3.2:80071512-80071531 | None:intergenic | 60.0% | |
| CCTCCGGTTGCCCTCCAATA+GGG | + | chr3.2:80070262-80070281 | MS.gene06424:intron | 60.0% | |
| CGGTCCTCTGCAGATGTTGC+TGG | + | chr3.2:80069058-80069077 | MS.gene06424:CDS | 60.0% | |
| CGGTTCATCTGGGGGTCATG+TGG | + | chr3.2:80070137-80070156 | MS.gene06424:intron | 60.0% | |
| GAGAACAATGCCCCTGAGGG+AGG | - | chr3.2:80070216-80070235 | None:intergenic | 60.0% | |
| GGAAGAAGAGGAGGAGAGGG+TGG | - | chr3.2:80070005-80070024 | None:intergenic | 60.0% | |
| TATTGGAGGGCAACCGGAGG+AGG | - | chr3.2:80070262-80070281 | None:intergenic | 60.0% | |
| TCCCACCTGAAACCACGAGG+AGG | - | chr3.2:80071513-80071532 | None:intergenic | 60.0% | |
| TCCTCCGGTTGCCCTCCAAT+AGG | + | chr3.2:80070261-80070280 | MS.gene06424:intron | 60.0% | |
| TTGCCAGGAACAGTCGGAGC+CGG | + | chr3.2:80071478-80071497 | MS.gene06424:intron | 60.0% | |
| ! | ATTTTGCGGGGGTCGCGAGA+AGG | - | chr3.2:80069458-80069477 | None:intergenic | 60.0% |
| ! | CCCTCCTCGTGGTTTCAGGT+GGG | + | chr3.2:80071509-80071528 | MS.gene06424:CDS | 60.0% |
| ! | CGCGAGGAAAGGCATAGGGT+GGG | + | chr3.2:80070643-80070662 | MS.gene06424:intron | 60.0% |
| !! | TAGGGGTGTCCGTGGTGTCA+TGG | - | chr3.2:80069661-80069680 | None:intergenic | 60.0% |
| ACTCCGGCTCCGACTGTTCC+TGG | - | chr3.2:80071484-80071503 | None:intergenic | 65.0% | |
| AGAGGAGGAGAGGGTGGGAG+AGG | - | chr3.2:80069999-80070018 | None:intergenic | 65.0% | |
| AGGAGGAGGGAAGAGGAGGG+CGG | - | chr3.2:80070245-80070264 | None:intergenic | 65.0% | |
| CAACCGGAGGAGGAGGGAAG+AGG | - | chr3.2:80070252-80070271 | None:intergenic | 65.0% | |
| CCCTATTGGAGGGCAACCGG+AGG | - | chr3.2:80070265-80070284 | None:intergenic | 65.0% | |
| CCTCCTCTTCCCTCCTCCTC+CGG | + | chr3.2:80070246-80070265 | MS.gene06424:intron | 65.0% | |
| CGGAGGAGGAGGGAAGAGGA+GGG | - | chr3.2:80070248-80070267 | None:intergenic | 65.0% | |
| GAGCACCCCTTACCTCCCTC+AGG | + | chr3.2:80070201-80070220 | MS.gene06424:intron | 65.0% | |
| GAGGAGAGGGTGGGAGAGGA+TGG | - | chr3.2:80069995-80070014 | None:intergenic | 65.0% | |
| GCACCCCTTACCTCCCTCAG+GGG | + | chr3.2:80070203-80070222 | MS.gene06424:intron | 65.0% | |
| GCCCTCCTCGTGGTTTCAGG+TGG | + | chr3.2:80071508-80071527 | MS.gene06424:CDS | 65.0% | |
| GGAACAGTCGGAGCCGGAGT+CGG | + | chr3.2:80071484-80071503 | MS.gene06424:intron | 65.0% | |
| GGAGCCCTCCTCGTGGTTTC+AGG | + | chr3.2:80071505-80071524 | MS.gene06424:CDS | 65.0% | |
| GGGGGTCATGTGGGTCAGTG+TGG | + | chr3.2:80070147-80070166 | MS.gene06424:intron | 65.0% | |
| TCGCGAGAAGGCAGCAGGGT+GGG | - | chr3.2:80069446-80069465 | None:intergenic | 65.0% | |
| ! | GCGCGAGGAAAGGCATAGGG+TGG | + | chr3.2:80070642-80070661 | MS.gene06424:intron | 65.0% |
| ! | GGCGCGCGAGGAAAGGCATA+GGG | + | chr3.2:80070639-80070658 | MS.gene06424:intron | 65.0% |
| CACGAGGAGGGCTCCGACTC+CGG | - | chr3.2:80071500-80071519 | None:intergenic | 70.0% | |
| CCGGAGGAGGAGGGAAGAGG+AGG | - | chr3.2:80070249-80070268 | None:intergenic | 70.0% | |
| GGAGGAGGGAAGAGGAGGGC+GGG | - | chr3.2:80070244-80070263 | None:intergenic | 70.0% | |
| GGAGGGCAACCGGAGGAGGA+GGG | - | chr3.2:80070258-80070277 | None:intergenic | 70.0% | |
| GGGGTCGCGAGAAGGCAGCA+GGG | - | chr3.2:80069450-80069469 | None:intergenic | 70.0% | |
| GTCGCGAGAAGGCAGCAGGG+TGG | - | chr3.2:80069447-80069466 | None:intergenic | 70.0% | |
| TGGAGGGCAACCGGAGGAGG+AGG | - | chr3.2:80070259-80070278 | None:intergenic | 70.0% | |
| ! | GGGCGCGCGAGGAAAGGCAT+AGG | + | chr3.2:80070638-80070657 | MS.gene06424:intron | 70.0% |
| CGGAGTCGGAGCCCTCCTCG+TGG | + | chr3.2:80071498-80071517 | MS.gene06424:CDS | 75.0% | |
| GGGGGTCGCGAGAAGGCAGC+AGG | - | chr3.2:80069451-80069470 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 80068968 | 80071675 | 80068968 | ID=MS.gene06424 |
| chr3.2 | mRNA | 80068968 | 80071675 | 80068968 | ID=MS.gene06424.t1;Parent=MS.gene06424 |
| chr3.2 | exon | 80068968 | 80069302 | 80068968 | ID=MS.gene06424.t1.exon1;Parent=MS.gene06424.t1 |
| chr3.2 | CDS | 80068968 | 80069302 | 80068968 | ID=cds.MS.gene06424.t1;Parent=MS.gene06424.t1 |
| chr3.2 | exon | 80071485 | 80071675 | 80071485 | ID=MS.gene06424.t1.exon2;Parent=MS.gene06424.t1 |
| chr3.2 | CDS | 80071485 | 80071675 | 80071485 | ID=cds.MS.gene06424.t1;Parent=MS.gene06424.t1 |
| Gene Sequence |
| Protein sequence |
