Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06430.t1 | XP_003602576.2 | 96.6 | 235 | 6 | 2 | 1 | 235 | 1 | 233 | 6.50E-103 | 383.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06430.t1 | B9RU15 | 50.5 | 188 | 89 | 3 | 51 | 238 | 37 | 220 | 3.4e-44 | 179.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06430.t1 | G7JBG7 | 96.6 | 235 | 6 | 2 | 1 | 235 | 1 | 233 | 4.7e-103 | 383.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06430.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06430.t1 | MTR_3g095840 | 97.872 | 235 | 3 | 2 | 1 | 235 | 1 | 233 | 1.24e-166 | 465 |
| MS.gene06430.t1 | MTR_1g007670 | 54.268 | 164 | 71 | 2 | 74 | 236 | 26 | 186 | 4.02e-51 | 169 |
| MS.gene06430.t1 | MTR_3g095830 | 59.649 | 114 | 37 | 3 | 8 | 121 | 3 | 107 | 2.80e-39 | 132 |
| MS.gene06430.t1 | MTR_1g007700 | 40.625 | 160 | 61 | 2 | 74 | 233 | 258 | 383 | 1.36e-33 | 127 |
| MS.gene06430.t1 | MTR_5g010300 | 47.917 | 48 | 25 | 0 | 74 | 121 | 242 | 289 | 2.59e-11 | 63.5 |
| MS.gene06430.t1 | MTR_5g010300 | 47.917 | 48 | 25 | 0 | 74 | 121 | 242 | 289 | 2.74e-11 | 63.5 |
| MS.gene06430.t1 | MTR_5g010300 | 47.917 | 48 | 25 | 0 | 74 | 121 | 242 | 289 | 3.07e-11 | 63.2 |
| MS.gene06430.t1 | MTR_5g010300 | 47.917 | 48 | 25 | 0 | 74 | 121 | 242 | 289 | 3.30e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06430.t1 | AT5G09790 | 60.000 | 165 | 63 | 2 | 72 | 236 | 62 | 223 | 2.74e-65 | 207 |
| MS.gene06430.t1 | AT5G09790 | 59.394 | 165 | 63 | 2 | 72 | 236 | 62 | 222 | 3.32e-64 | 204 |
| MS.gene06430.t1 | AT5G24330 | 54.037 | 161 | 72 | 1 | 76 | 236 | 34 | 192 | 1.00e-52 | 174 |
Find 78 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCCACCGTTCTCTAAAA+TGG | 0.242537 | 3.2:-80005014 | None:intergenic |
| CGTAGGGATTCTCTTGATTC+CGG | 0.245953 | 3.2:+80002868 | MS.gene06430:CDS |
| AGAAAATTCTCCATTTCTTC+GGG | 0.303724 | 3.2:+80002842 | MS.gene06430:CDS |
| AAGAAAATTCTCCATTTCTT+CGG | 0.317251 | 3.2:+80002841 | MS.gene06430:CDS |
| ATTTGCTTCAGCCTCCTATC+AGG | 0.349536 | 3.2:-80004896 | None:intergenic |
| GTAGGGATTCTCTTGATTCC+GGG | 0.353728 | 3.2:+80002869 | MS.gene06430:CDS |
| AATAAGCTGACGTACTTTCC+AGG | 0.362677 | 3.2:+80004965 | MS.gene06430:CDS |
| CCCTACGAAGCCCGAAGAAA+TGG | 0.364855 | 3.2:-80002852 | None:intergenic |
| GAACAATCGTGCTTCTTCTC+AGG | 0.365882 | 3.2:+80002891 | MS.gene06430:CDS |
| TGCTACTGCTTTAACAGCAT+TGG | 0.399408 | 3.2:+80004928 | MS.gene06430:CDS |
| TTCTGTACCACCAGAGGTCT+TGG | 0.407511 | 3.2:-80004833 | None:intergenic |
| AGAAGAAGCACGATTGTTCC+CGG | 0.418393 | 3.2:-80002887 | None:intergenic |
| ATCGGAACTCGAACAACAAT+TGG | 0.420274 | 3.2:-80002644 | None:intergenic |
| GCAGATCTAGGAGCCATTCC+TGG | 0.421695 | 3.2:-80004983 | None:intergenic |
| CGCTTGTTAATATATATAAG+AGG | 0.428689 | 3.2:+80002486 | MS.gene06430:CDS |
| ATGTGGGTCCGGTGAACAAC+CGG | 0.439307 | 3.2:+80002565 | MS.gene06430:CDS |
| GGATCTTCTGTAGGAACAAA+TGG | 0.446011 | 3.2:-80004875 | None:intergenic |
| GATTAAGCTTGATAGCTTGA+TGG | 0.452643 | 3.2:-80002369 | None:intergenic |
| CTCTGGTGGTACAGAAGAAA+AGG | 0.456244 | 3.2:+80004840 | MS.gene06430:CDS |
| GACCTTGACATCAGAACACT+TGG | 0.458131 | 3.2:-80002684 | None:intergenic |
| ACCTCCTGTGTGAGCAATGT+GGG | 0.458530 | 3.2:+80002549 | MS.gene06430:CDS |
| GCTGAGGAGGAGGAGGATTA+CGG | 0.459874 | 3.2:+80002524 | MS.gene06430:CDS |
| CTCCACCTTCGAGGAGGAGG+AGG | 0.460011 | 3.2:+80002448 | MS.gene06430:CDS |
| GGCTGAGTACACGGTGGCTG+AGG | 0.462695 | 3.2:+80002508 | MS.gene06430:CDS |
| CTCCTCTTCCTCCACCTTCG+AGG | 0.464032 | 3.2:+80002439 | MS.gene06430:CDS |
| CTCCTCGAAGGTGGAGGAAG+AGG | 0.464573 | 3.2:-80002441 | None:intergenic |
| TTCCTCCACCTTCGAGGAGG+AGG | 0.469701 | 3.2:+80002445 | MS.gene06430:CDS |
| CCATTTCTTCGGGCTTCGTA+GGG | 0.472840 | 3.2:+80002852 | MS.gene06430:CDS |
| GGGCAAATCCACGGACCAAT+CGG | 0.479975 | 3.2:-80002662 | None:intergenic |
| TCACATAAAAGCAGCTCCTC+CGG | 0.483953 | 3.2:-80002584 | None:intergenic |
| TGATAGGAGGCTGAAGCAAA+TGG | 0.484670 | 3.2:+80004898 | MS.gene06430:CDS |
| TCCATTTCTTCGGGCTTCGT+AGG | 0.489521 | 3.2:+80002851 | MS.gene06430:CDS |
| TTCCTACAGAAGATCCTGAT+AGG | 0.493201 | 3.2:+80004882 | MS.gene06430:CDS |
| AATGGCTCCGGCGACAGCTC+CGG | 0.497607 | 3.2:+80002328 | None:intergenic |
| ATGGATCGATTAGCAGATCT+AGG | 0.502517 | 3.2:-80004995 | None:intergenic |
| CTGTGTGAGCAATGTGGGTC+CGG | 0.504059 | 3.2:+80002554 | MS.gene06430:CDS |
| CACGGTGGCTGAGGAGGAGG+AGG | 0.506420 | 3.2:+80002517 | MS.gene06430:CDS |
| CAGCTCCTCCGGTTGTTCAC+CGG | 0.511216 | 3.2:-80002573 | None:intergenic |
| TCGGAGACGTCCAAGACCTC+TGG | 0.514165 | 3.2:+80004823 | MS.gene06430:CDS |
| TGAGTACACGGTGGCTGAGG+AGG | 0.515374 | 3.2:+80002511 | MS.gene06430:CDS |
| CCCCAAGTGTTCTGATGTCA+AGG | 0.520959 | 3.2:+80002682 | MS.gene06430:CDS |
| CTCCTCCTCCTCGAAGGTGG+AGG | 0.525162 | 3.2:-80002447 | None:intergenic |
| TTTAGAGAACGGTGGCATGC+AGG | 0.534531 | 3.2:+80005018 | MS.gene06430:CDS |
| ACCTTGACATCAGAACACTT+GGG | 0.540926 | 3.2:-80002683 | None:intergenic |
| AACAATCGTGCTTCTTCTCA+GGG | 0.545517 | 3.2:+80002892 | MS.gene06430:CDS |
| GTACACGGTGGCTGAGGAGG+AGG | 0.545768 | 3.2:+80002514 | MS.gene06430:CDS |
| TTCGAGTTCCGATTGGTCCG+TGG | 0.546720 | 3.2:+80002654 | MS.gene06430:CDS |
| GGAGACGCCGGAGCTGTCGC+CGG | 0.559953 | 3.2:-80002335 | None:intergenic |
| ATTGTTGTTCGAGTTCCGAT+TGG | 0.560719 | 3.2:+80002647 | MS.gene06430:CDS |
| CTCGAAGGTGGAGGAAGAGG+AGG | 0.563327 | 3.2:-80002438 | None:intergenic |
| CCCCTCCTCCTCCTCGAAGG+TGG | 0.568245 | 3.2:-80002450 | None:intergenic |
| CAACCTCACCTGAATGGCTC+CGG | 0.568822 | 3.2:+80002316 | None:intergenic |
| ATGCTGTTAAAGCAGTAGCA+AGG | 0.571401 | 3.2:-80004925 | None:intergenic |
| TGCTGTTAAAGCAGTAGCAA+GGG | 0.574924 | 3.2:-80004924 | None:intergenic |
| CCACCTTCGAGGAGGAGGAG+GGG | 0.583605 | 3.2:+80002450 | MS.gene06430:CDS |
| TCCACCTTCGAGGAGGAGGA+GGG | 0.584045 | 3.2:+80002449 | MS.gene06430:CDS |
| CTTTAGATGCTATGAAGCGT+CGG | 0.589068 | 3.2:+80004804 | MS.gene06430:intron |
| ATTCCCCTCCTCCTCCTCGA+AGG | 0.589669 | 3.2:-80002453 | None:intergenic |
| CTTGATAGCTTGATGGAAGA+CGG | 0.590190 | 3.2:-80002362 | None:intergenic |
| GCTTGTTAATATATATAAGA+GGG | 0.591764 | 3.2:+80002487 | MS.gene06430:CDS |
| GCTGACGTACTTTCCAGGAA+TGG | 0.592256 | 3.2:+80004970 | MS.gene06430:CDS |
| CTCCTATCAGGATCTTCTGT+AGG | 0.592606 | 3.2:-80004884 | None:intergenic |
| GAACACTTGGGGCAAATCCA+CGG | 0.593747 | 3.2:-80002671 | None:intergenic |
| GAAGACGGCGATGGAGACGC+CGG | 0.596034 | 3.2:-80002347 | None:intergenic |
| CCTTGACATCAGAACACTTG+GGG | 0.598005 | 3.2:-80002682 | None:intergenic |
| ATATAAGAGGGCTGAGTACA+CGG | 0.598652 | 3.2:+80002499 | MS.gene06430:CDS |
| AGCTTGATGGAAGACGGCGA+TGG | 0.603823 | 3.2:-80002356 | None:intergenic |
| TTATGTGACAAATGTGACAA+TGG | 0.612992 | 3.2:+80002599 | MS.gene06430:CDS |
| TGTGAGGTGCATGGGTGCGG+CGG | 0.615402 | 3.2:-80002391 | None:intergenic |
| CTCTTCCTCCACCTTCGAGG+AGG | 0.618161 | 3.2:+80002442 | MS.gene06430:CDS |
| CGGACCCACATTGCTCACAC+AGG | 0.629732 | 3.2:-80002553 | None:intergenic |
| CTACAGAAGATCCTGATAGG+AGG | 0.635132 | 3.2:+80004885 | MS.gene06430:CDS |
| ACCCACATTGCTCACACAGG+AGG | 0.655882 | 3.2:-80002550 | None:intergenic |
| GACCTCCTGTGTGAGCAATG+TGG | 0.660393 | 3.2:+80002548 | MS.gene06430:CDS |
| TGGTACAGAAGAAAAGGAGA+AGG | 0.674031 | 3.2:+80004846 | MS.gene06430:CDS |
| GAGACGTCCAAGACCTCTGG+TGG | 0.674893 | 3.2:+80004826 | MS.gene06430:CDS |
| TGGGTCCGGTGAACAACCGG+AGG | 0.676363 | 3.2:+80002568 | MS.gene06430:CDS |
| TAAGAGGGCTGAGTACACGG+TGG | 0.812154 | 3.2:+80002502 | MS.gene06430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAAATATTTTTTTAT+TGG | + | chr3.2:80002952-80002971 | MS.gene06430:intron | 0.0% |
| !! | AAACATATGAATTAATTATT+TGG | + | chr3.2:80003235-80003254 | MS.gene06430:intron | 10.0% |
| !!! | ATCTTTAGAAAATATTTAAT+TGG | + | chr3.2:80004521-80004540 | MS.gene06430:intron | 10.0% |
| !! | ATATATACATGATATCTAAT+TGG | + | chr3.2:80004748-80004767 | MS.gene06430:intron | 15.0% |
| !! | AAAAGATTAAGTGATTAAGT+TGG | + | chr3.2:80004109-80004128 | MS.gene06430:intron | 20.0% |
| !! | AAAAGTTGTAGGAAAAAAAA+AGG | - | chr3.2:80004577-80004596 | None:intergenic | 20.0% |
| !! | AGTATAATTTGACATTAATG+TGG | + | chr3.2:80004203-80004222 | MS.gene06430:intron | 20.0% |
| !! | TCAAAACATAAAAAAGTTGT+AGG | - | chr3.2:80004588-80004607 | None:intergenic | 20.0% |
| !! | TTCAAATCAAACAATAGAAT+AGG | - | chr3.2:80003745-80003764 | None:intergenic | 20.0% |
| !!! | CAAAAGAACTAGAATTTTTT+TGG | + | chr3.2:80004316-80004335 | MS.gene06430:intron | 20.0% |
| !!! | GCTTGTTAATATATATAAGA+GGG | + | chr3.2:80002487-80002506 | MS.gene06430:CDS | 20.0% |
| !!! | TATTCTATTGTTTGATTTGA+AGG | + | chr3.2:80003744-80003763 | MS.gene06430:intron | 20.0% |
| !!! | TCGTGGATTATAAATATTTT+TGG | + | chr3.2:80003159-80003178 | MS.gene06430:intron | 20.0% |
| !!! | TTGATTTGTTGTAGTTATTT+TGG | + | chr3.2:80003402-80003421 | MS.gene06430:intron | 20.0% |
| ! | AACATTACTATCGCAAAAAT+AGG | - | chr3.2:80003578-80003597 | None:intergenic | 25.0% |
| ! | AAGAAAATTCTCCATTTCTT+CGG | + | chr3.2:80002841-80002860 | MS.gene06430:CDS | 25.0% |
| ! | ATGAAGGAACAAATATCAAA+AGG | - | chr3.2:80004413-80004432 | None:intergenic | 25.0% |
| ! | ATTTCGTACAAAGTCATTTA+GGG | - | chr3.2:80003915-80003934 | None:intergenic | 25.0% |
| ! | CAAATCAAGCTTAAAATTTG+TGG | - | chr3.2:80003390-80003409 | None:intergenic | 25.0% |
| ! | CAATGTTTGGATATTTGATT+TGG | + | chr3.2:80003027-80003046 | MS.gene06430:intron | 25.0% |
| ! | CGATAGTAATGTTAATCTTA+AGG | + | chr3.2:80003585-80003604 | MS.gene06430:intron | 25.0% |
| ! | TATTTCGTACAAAGTCATTT+AGG | - | chr3.2:80003916-80003935 | None:intergenic | 25.0% |
| ! | TCTTCTTAATTTATCCATTC+TGG | + | chr3.2:80004780-80004799 | MS.gene06430:intron | 25.0% |
| ! | TGAAGGAACAAATATCAAAA+GGG | - | chr3.2:80004412-80004431 | None:intergenic | 25.0% |
| ! | TGTGATTGTGATTATTAATG+TGG | + | chr3.2:80002774-80002793 | MS.gene06430:intron | 25.0% |
| ! | TGTTTCTTTACAAATTGTGT+TGG | + | chr3.2:80003332-80003351 | MS.gene06430:intron | 25.0% |
| !! | CGCTTGTTAATATATATAAG+AGG | + | chr3.2:80002486-80002505 | MS.gene06430:CDS | 25.0% |
| !! | TAAATTTTTGTGTGAACATG+CGG | + | chr3.2:80003266-80003285 | MS.gene06430:intron | 25.0% |
| !! | TTTTGTCAATATGCAATGTT+TGG | + | chr3.2:80003014-80003033 | MS.gene06430:intron | 25.0% |
| !!! | AGATTGTTTCTGAAAATTTG+TGG | + | chr3.2:80003859-80003878 | MS.gene06430:intron | 25.0% |
| !!! | ATTGTTTCTGAAAATTTGTG+GGG | + | chr3.2:80003861-80003880 | MS.gene06430:intron | 25.0% |
| !!! | GATTGTTTCTGAAAATTTGT+GGG | + | chr3.2:80003860-80003879 | MS.gene06430:intron | 25.0% |
| !!! | TAGAATTTTTTTGGCTTACT+AGG | + | chr3.2:80004325-80004344 | MS.gene06430:intron | 25.0% |
| ACTTATTCTCTAGCAAATCA+TGG | - | chr3.2:80004250-80004269 | None:intergenic | 30.0% | |
| AGAAAATTCTCCATTTCTTC+GGG | + | chr3.2:80002842-80002861 | MS.gene06430:CDS | 30.0% | |
| ATAGAGATACCATCGTTTAA+TGG | + | chr3.2:80004041-80004060 | MS.gene06430:intron | 30.0% | |
| ATGCTTATGTTTACCTAGAA+TGG | + | chr3.2:80004456-80004475 | MS.gene06430:intron | 30.0% | |
| ATTACTATCGCAAAAATAGG+AGG | - | chr3.2:80003575-80003594 | None:intergenic | 30.0% | |
| ATTCCTTCACAAATTGGTTA+TGG | + | chr3.2:80003525-80003544 | MS.gene06430:intron | 30.0% | |
| CAATTTCAGCAAAAACATGA+AGG | - | chr3.2:80004429-80004448 | None:intergenic | 30.0% | |
| GTAAATGTGTTTACCATTCT+AGG | - | chr3.2:80004472-80004491 | None:intergenic | 30.0% | |
| TAAAGAAACATTGCCACAAA+CGG | - | chr3.2:80003322-80003341 | None:intergenic | 30.0% | |
| TGCATGACAAGTTATATGTA+AGG | + | chr3.2:80003662-80003681 | MS.gene06430:intron | 30.0% | |
| TTATATGTAAGGCAGCTATA+AGG | + | chr3.2:80003673-80003692 | MS.gene06430:intron | 30.0% | |
| TTATGTGACAAATGTGACAA+TGG | + | chr3.2:80002599-80002618 | MS.gene06430:CDS | 30.0% | |
| TTGCTAGAGAATAAGTTACT+AGG | + | chr3.2:80004254-80004273 | MS.gene06430:intron | 30.0% | |
| TTTAATGGCACTTGAAATAG+AGG | + | chr3.2:80004056-80004075 | MS.gene06430:intron | 30.0% | |
| TTTACAAATTGTGTTGGACA+TGG | + | chr3.2:80003338-80003357 | MS.gene06430:intron | 30.0% | |
| ! | AGCTTCTTTTGAATTTTGTG+AGG | - | chr3.2:80002410-80002429 | None:intergenic | 30.0% |
| ! | CTATAGATTTTTCCATCATC+AGG | + | chr3.2:80003362-80003381 | MS.gene06430:intron | 30.0% |
| !! | AATCGATCCATTTTAGAGAA+CGG | + | chr3.2:80005007-80005026 | MS.gene06430:CDS | 30.0% |
| !! | ATCTTTTGTGTCACTAAACA+TGG | - | chr3.2:80004096-80004115 | None:intergenic | 30.0% |
| !! | GTTCTAACTTCAAAAGTACT+CGG | + | chr3.2:80004614-80004633 | MS.gene06430:intron | 30.0% |
| !! | GTTTTTGATCAGTTGTTGTT+TGG | + | chr3.2:80003063-80003082 | MS.gene06430:intron | 30.0% |
| !! | TATTGTTTGATTTGAAGGCA+AGG | + | chr3.2:80003749-80003768 | MS.gene06430:intron | 30.0% |
| !! | TTCTAACTTCAAAAGTACTC+GGG | + | chr3.2:80004615-80004634 | MS.gene06430:intron | 30.0% |
| !!! | TGTAGTTATTTTGGTGTCTT+GGG | + | chr3.2:80003411-80003430 | MS.gene06430:intron | 30.0% |
| !!! | TTGTAGTTATTTTGGTGTCT+TGG | + | chr3.2:80003410-80003429 | MS.gene06430:intron | 30.0% |
| AAAGAAACATTGCCACAAAC+GGG | - | chr3.2:80003321-80003340 | None:intergenic | 35.0% | |
| AGAAGAATTGAAATGGATGC+TGG | + | chr3.2:80004147-80004166 | MS.gene06430:intron | 35.0% | |
| ATGACAATTGCTAAGCAGTT+AGG | - | chr3.2:80003790-80003809 | None:intergenic | 35.0% | |
| ATGGTATCTCTATTGTCAAG+TGG | - | chr3.2:80004034-80004053 | None:intergenic | 35.0% | |
| CGGAACAAGAAGAATTGAAA+TGG | + | chr3.2:80004140-80004159 | MS.gene06430:intron | 35.0% | |
| GCTATCTGTTAAGGTAATAC+TGG | - | chr3.2:80004004-80004023 | None:intergenic | 35.0% | |
| ! | ATAGCATCTAAAGTCCAGAA+TGG | - | chr3.2:80004797-80004816 | None:intergenic | 35.0% |
| ! | GATTAAGCTTGATAGCTTGA+TGG | - | chr3.2:80002372-80002391 | None:intergenic | 35.0% |
| ! | GTACATTGAATCTTGATTCG+TGG | + | chr3.2:80003142-80003161 | MS.gene06430:intron | 35.0% |
| ! | TTGAATTTTGTGAGGTGCAT+GGG | - | chr3.2:80002402-80002421 | None:intergenic | 35.0% |
| ! | TTTCAAGTGCCATTAAACGA+TGG | - | chr3.2:80004053-80004072 | None:intergenic | 35.0% |
| ! | TTTGAATTTTGTGAGGTGCA+TGG | - | chr3.2:80002403-80002422 | None:intergenic | 35.0% |
| !! | CTTGAAATAGAGGCATCAAA+AGG | + | chr3.2:80004066-80004085 | MS.gene06430:intron | 35.0% |
| !! | TGATTAAGTTGGAGTCTTCA+CGG | + | chr3.2:80004120-80004139 | MS.gene06430:intron | 35.0% |
| !! | TTTCACTAGCTTGCAGATTT+TGG | + | chr3.2:80003701-80003720 | MS.gene06430:intron | 35.0% |
| !!! | TTTTGGCTTACTAGGTGTAT+AGG | + | chr3.2:80004333-80004352 | MS.gene06430:intron | 35.0% |
| AAATTTGTGGAGCCTGATGA+TGG | - | chr3.2:80003377-80003396 | None:intergenic | 40.0% | |
| AACAATCGTGCTTCTTCTCA+GGG | + | chr3.2:80002892-80002911 | MS.gene06430:CDS | 40.0% | |
| AATAAGCTGACGTACTTTCC+AGG | + | chr3.2:80004965-80004984 | MS.gene06430:CDS | 40.0% | |
| ACAAACGGGCAACTTTCATA+AGG | - | chr3.2:80003307-80003326 | None:intergenic | 40.0% | |
| ACCAATTTGTGAAGGAATGC+CGG | - | chr3.2:80003523-80003542 | None:intergenic | 40.0% | |
| ACCTTGACATCAGAACACTT+GGG | - | chr3.2:80002686-80002705 | None:intergenic | 40.0% | |
| ATATAAGAGGGCTGAGTACA+CGG | + | chr3.2:80002499-80002518 | MS.gene06430:CDS | 40.0% | |
| ATCGGAACTCGAACAACAAT+TGG | - | chr3.2:80002647-80002666 | None:intergenic | 40.0% | |
| ATGCTGTTAAAGCAGTAGCA+AGG | - | chr3.2:80004928-80004947 | None:intergenic | 40.0% | |
| ATGGATCGATTAGCAGATCT+AGG | - | chr3.2:80004998-80005017 | None:intergenic | 40.0% | |
| CCACCATAACCAATTTGTGA+AGG | - | chr3.2:80003531-80003550 | None:intergenic | 40.0% | |
| CCTTCACAAATTGGTTATGG+TGG | + | chr3.2:80003528-80003547 | MS.gene06430:intron | 40.0% | |
| CTTTAGATGCTATGAAGCGT+CGG | + | chr3.2:80004804-80004823 | MS.gene06430:intron | 40.0% | |
| GGATCTTCTGTAGGAACAAA+TGG | - | chr3.2:80004878-80004897 | None:intergenic | 40.0% | |
| GGTTCTTGAGCTATCTGTTA+AGG | - | chr3.2:80004013-80004032 | None:intergenic | 40.0% | |
| GTTGCAATGGCGTGTTTATA+TGG | - | chr3.2:80003482-80003501 | None:intergenic | 40.0% | |
| TAAGCAGTTAGGCGTTTGAT+CGG | - | chr3.2:80003779-80003798 | None:intergenic | 40.0% | |
| TGCTACTGCTTTAACAGCAT+TGG | + | chr3.2:80004928-80004947 | MS.gene06430:CDS | 40.0% | |
| TGCTGTTAAAGCAGTAGCAA+GGG | - | chr3.2:80004927-80004946 | None:intergenic | 40.0% | |
| TGGTACAGAAGAAAAGGAGA+AGG | + | chr3.2:80004846-80004865 | MS.gene06430:CDS | 40.0% | |
| TTATGAAAGTTGCCCGTTTG+TGG | + | chr3.2:80003306-80003325 | MS.gene06430:intron | 40.0% | |
| TTCCTACAGAAGATCCTGAT+AGG | + | chr3.2:80004882-80004901 | MS.gene06430:CDS | 40.0% | |
| ! | ATTGTTGTTCGAGTTCCGAT+TGG | + | chr3.2:80002647-80002666 | MS.gene06430:CDS | 40.0% |
| ! | CTTGATAGCTTGATGGAAGA+CGG | - | chr3.2:80002365-80002384 | None:intergenic | 40.0% |
| !! | TGTTTGATTTGAAGGCAAGG+AGG | + | chr3.2:80003752-80003771 | MS.gene06430:intron | 40.0% |
| !! | TTGGCTTTGTGAAAGTGATG+TGG | + | chr3.2:80003082-80003101 | MS.gene06430:intron | 40.0% |
| AAACACGCCATTGCAACCTA+AGG | + | chr3.2:80003485-80003504 | MS.gene06430:intron | 45.0% | |
| AAGCAGTTAGGCGTTTGATC+GGG | - | chr3.2:80003778-80003797 | None:intergenic | 45.0% | |
| ATCGCAAAAATAGGAGGCCA+TGG | - | chr3.2:80003569-80003588 | None:intergenic | 45.0% | |
| ATTTGCTTCAGCCTCCTATC+AGG | - | chr3.2:80004899-80004918 | None:intergenic | 45.0% | |
| CCTTGACATCAGAACACTTG+GGG | - | chr3.2:80002685-80002704 | None:intergenic | 45.0% | |
| CGTAGGGATTCTCTTGATTC+CGG | + | chr3.2:80002868-80002887 | MS.gene06430:CDS | 45.0% | |
| CTACAGAAGATCCTGATAGG+AGG | + | chr3.2:80004885-80004904 | MS.gene06430:CDS | 45.0% | |
| CTCCTATCAGGATCTTCTGT+AGG | - | chr3.2:80004887-80004906 | None:intergenic | 45.0% | |
| CTCTGGTGGTACAGAAGAAA+AGG | + | chr3.2:80004840-80004859 | MS.gene06430:CDS | 45.0% | |
| GAACAATCGTGCTTCTTCTC+AGG | + | chr3.2:80002891-80002910 | MS.gene06430:CDS | 45.0% | |
| GACCTTGACATCAGAACACT+TGG | - | chr3.2:80002687-80002706 | None:intergenic | 45.0% | |
| GAGTTGAGTAATGCTGTCGA+TGG | + | chr3.2:80003438-80003457 | MS.gene06430:intron | 45.0% | |
| GCAATGGCGTGTTTATATGG+CGG | - | chr3.2:80003479-80003498 | None:intergenic | 45.0% | |
| GTAGGGATTCTCTTGATTCC+GGG | + | chr3.2:80002869-80002888 | MS.gene06430:CDS | 45.0% | |
| TCACATAAAAGCAGCTCCTC+CGG | - | chr3.2:80002587-80002606 | None:intergenic | 45.0% | |
| TGATAGGAGGCTGAAGCAAA+TGG | + | chr3.2:80004898-80004917 | MS.gene06430:CDS | 45.0% | |
| TTGAGTAATGCTGTCGATGG+CGG | + | chr3.2:80003441-80003460 | MS.gene06430:intron | 45.0% | |
| ! | AGAAGAAGCACGATTGTTCC+CGG | - | chr3.2:80002890-80002909 | None:intergenic | 45.0% |
| ! | CATGCCACCGTTCTCTAAAA+TGG | - | chr3.2:80005017-80005036 | None:intergenic | 45.0% |
| ! | CTTTTCTTCTGTACCACCAG+AGG | - | chr3.2:80004842-80004861 | None:intergenic | 45.0% |
| ! | TTGTGGGGATTCTAGCTATG+TGG | + | chr3.2:80003876-80003895 | MS.gene06430:intron | 45.0% |
| !! | CGATCCATTTTAGAGAACGG+TGG | + | chr3.2:80005010-80005029 | MS.gene06430:CDS | 45.0% |
| !! | CTTGCAGATTTTGGTGCAAC+TGG | + | chr3.2:80003710-80003729 | MS.gene06430:intron | 45.0% |
| ACCTCCTGTGTGAGCAATGT+GGG | + | chr3.2:80002549-80002568 | MS.gene06430:CDS | 50.0% | |
| CCATTTCTTCGGGCTTCGTA+GGG | + | chr3.2:80002852-80002871 | MS.gene06430:CDS | 50.0% | |
| CCCCAAGTGTTCTGATGTCA+AGG | + | chr3.2:80002682-80002701 | MS.gene06430:CDS | 50.0% | |
| GAACACTTGGGGCAAATCCA+CGG | - | chr3.2:80002674-80002693 | None:intergenic | 50.0% | |
| GCAAAAATAGGAGGCCATGG+CGG | - | chr3.2:80003566-80003585 | None:intergenic | 50.0% | |
| GCCGGCATTCCTTCACAAAT+TGG | + | chr3.2:80003519-80003538 | MS.gene06430:intron | 50.0% | |
| GCTGACGTACTTTCCAGGAA+TGG | + | chr3.2:80004970-80004989 | MS.gene06430:CDS | 50.0% | |
| GGTTACCGAAAAATCCGCCA+TGG | + | chr3.2:80003549-80003568 | MS.gene06430:intron | 50.0% | |
| TCCATTTCTTCGGGCTTCGT+AGG | + | chr3.2:80002851-80002870 | MS.gene06430:CDS | 50.0% | |
| TGTGAAGGAATGCCGGCAAA+TGG | - | chr3.2:80003516-80003535 | None:intergenic | 50.0% | |
| TTCTGTACCACCAGAGGTCT+TGG | - | chr3.2:80004836-80004855 | None:intergenic | 50.0% | |
| TTTAGAGAACGGTGGCATGC+AGG | + | chr3.2:80005018-80005037 | MS.gene06430:CDS | 50.0% | |
| ! | TTTTGTGAGGTGCATGGGTG+CGG | - | chr3.2:80002397-80002416 | None:intergenic | 50.0% |
| ACCCACATTGCTCACACAGG+AGG | - | chr3.2:80002553-80002572 | None:intergenic | 55.0% | |
| AGCTTGATGGAAGACGGCGA+TGG | - | chr3.2:80002359-80002378 | None:intergenic | 55.0% | |
| ATGTGGGTCCGGTGAACAAC+CGG | + | chr3.2:80002565-80002584 | MS.gene06430:CDS | 55.0% | |
| CCCTACGAAGCCCGAAGAAA+TGG | - | chr3.2:80002855-80002874 | None:intergenic | 55.0% | |
| CTGTGTGAGCAATGTGGGTC+CGG | + | chr3.2:80002554-80002573 | MS.gene06430:CDS | 55.0% | |
| GAAGGAATGCCGGCAAATGG+TGG | - | chr3.2:80003513-80003532 | None:intergenic | 55.0% | |
| GACCTCCTGTGTGAGCAATG+TGG | + | chr3.2:80002548-80002567 | MS.gene06430:CDS | 55.0% | |
| GCAGATCTAGGAGCCATTCC+TGG | - | chr3.2:80004986-80005005 | None:intergenic | 55.0% | |
| GCTGAGGAGGAGGAGGATTA+CGG | + | chr3.2:80002524-80002543 | MS.gene06430:CDS | 55.0% | |
| GGGCAAATCCACGGACCAAT+CGG | - | chr3.2:80002665-80002684 | None:intergenic | 55.0% | |
| TAAGAGGGCTGAGTACACGG+TGG | + | chr3.2:80002502-80002521 | MS.gene06430:CDS | 55.0% | |
| ! | TTCGAGTTCCGATTGGTCCG+TGG | + | chr3.2:80002654-80002673 | MS.gene06430:CDS | 55.0% |
| !! | GTAATGCTGTCGATGGCGGA+AGG | + | chr3.2:80003445-80003464 | MS.gene06430:intron | 55.0% |
| !!! | GGAGGCCATGGCGGATTTTT+CGG | - | chr3.2:80003557-80003576 | None:intergenic | 55.0% |
| ATTCCCCTCCTCCTCCTCGA+AGG | - | chr3.2:80002456-80002475 | None:intergenic | 60.0% | |
| CAGCTCCTCCGGTTGTTCAC+CGG | - | chr3.2:80002576-80002595 | None:intergenic | 60.0% | |
| CGGACCCACATTGCTCACAC+AGG | - | chr3.2:80002556-80002575 | None:intergenic | 60.0% | |
| CTCCTCGAAGGTGGAGGAAG+AGG | - | chr3.2:80002444-80002463 | None:intergenic | 60.0% | |
| CTCCTCTTCCTCCACCTTCG+AGG | + | chr3.2:80002439-80002458 | MS.gene06430:CDS | 60.0% | |
| CTCGAAGGTGGAGGAAGAGG+AGG | - | chr3.2:80002441-80002460 | None:intergenic | 60.0% | |
| CTCTTCCTCCACCTTCGAGG+AGG | + | chr3.2:80002442-80002461 | MS.gene06430:CDS | 60.0% | |
| GAGACGTCCAAGACCTCTGG+TGG | + | chr3.2:80004826-80004845 | MS.gene06430:CDS | 60.0% | |
| TCCACCTTCGAGGAGGAGGA+GGG | + | chr3.2:80002449-80002468 | MS.gene06430:CDS | 60.0% | |
| TCGGAGACGTCCAAGACCTC+TGG | + | chr3.2:80004823-80004842 | MS.gene06430:CDS | 60.0% | |
| TGAGTACACGGTGGCTGAGG+AGG | + | chr3.2:80002511-80002530 | MS.gene06430:CDS | 60.0% | |
| TTCCTCCACCTTCGAGGAGG+AGG | + | chr3.2:80002445-80002464 | MS.gene06430:CDS | 60.0% | |
| ! | CCTAAGGCGCCACCATTTGC+CGG | + | chr3.2:80003501-80003520 | MS.gene06430:intron | 60.0% |
| ! | GGTGGCGCCTTAGGTTGCAA+TGG | - | chr3.2:80003495-80003514 | None:intergenic | 60.0% |
| CCACCTTCGAGGAGGAGGAG+GGG | + | chr3.2:80002450-80002469 | MS.gene06430:CDS | 65.0% | |
| CTCCACCTTCGAGGAGGAGG+AGG | + | chr3.2:80002448-80002467 | MS.gene06430:CDS | 65.0% | |
| CTCCTCCTCCTCGAAGGTGG+AGG | - | chr3.2:80002450-80002469 | None:intergenic | 65.0% | |
| GAAGACGGCGATGGAGACGC+CGG | - | chr3.2:80002350-80002369 | None:intergenic | 65.0% | |
| GGCTGAGTACACGGTGGCTG+AGG | + | chr3.2:80002508-80002527 | MS.gene06430:CDS | 65.0% | |
| GTACACGGTGGCTGAGGAGG+AGG | + | chr3.2:80002514-80002533 | MS.gene06430:CDS | 65.0% | |
| TGGGTCCGGTGAACAACCGG+AGG | + | chr3.2:80002568-80002587 | MS.gene06430:CDS | 65.0% | |
| TGTGAGGTGCATGGGTGCGG+CGG | - | chr3.2:80002394-80002413 | None:intergenic | 65.0% | |
| ! | CCGGCAAATGGTGGCGCCTT+AGG | - | chr3.2:80003504-80003523 | None:intergenic | 65.0% |
| CACGGTGGCTGAGGAGGAGG+AGG | + | chr3.2:80002517-80002536 | MS.gene06430:CDS | 70.0% | |
| CCCCTCCTCCTCCTCGAAGG+TGG | - | chr3.2:80002453-80002472 | None:intergenic | 70.0% | |
| GGAGACGCCGGAGCTGTCGC+CGG | - | chr3.2:80002338-80002357 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 80002329 | 80005054 | 80002329 | ID=MS.gene06430 |
| chr3.2 | mRNA | 80002329 | 80005054 | 80002329 | ID=MS.gene06430.t1;Parent=MS.gene06430 |
| chr3.2 | exon | 80002329 | 80002719 | 80002329 | ID=MS.gene06430.t1.exon1;Parent=MS.gene06430.t1 |
| chr3.2 | CDS | 80002329 | 80002719 | 80002329 | ID=cds.MS.gene06430.t1;Parent=MS.gene06430.t1 |
| chr3.2 | exon | 80002830 | 80002913 | 80002830 | ID=MS.gene06430.t1.exon2;Parent=MS.gene06430.t1 |
| chr3.2 | CDS | 80002830 | 80002913 | 80002830 | ID=cds.MS.gene06430.t1;Parent=MS.gene06430.t1 |
| chr3.2 | exon | 80004810 | 80005054 | 80004810 | ID=MS.gene06430.t1.exon3;Parent=MS.gene06430.t1 |
| chr3.2 | CDS | 80004810 | 80005054 | 80004810 | ID=cds.MS.gene06430.t1;Parent=MS.gene06430.t1 |
| Gene Sequence |
| Protein sequence |
