Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064363.t1 | RHN67153.1 | 86.8 | 901 | 110 | 7 | 1 | 898 | 1 | 895 | 0.00E+00 | 1342.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064363.t1 | Q9LTS7 | 35.4 | 277 | 151 | 4 | 498 | 750 | 336 | 608 | 4.0e-13 | 78.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064363.t1 | A0A396IRN9 | 86.8 | 901 | 110 | 7 | 1 | 898 | 1 | 895 | 0.0e+00 | 1342.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064363.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064363.t1 | MTR_5g096500 | 90.211 | 899 | 74 | 5 | 1 | 898 | 1 | 886 | 0.0 | 1567 |
| MS.gene064363.t1 | MTR_5g096500 | 90.100 | 899 | 74 | 6 | 1 | 898 | 1 | 885 | 0.0 | 1560 |
| MS.gene064363.t1 | MTR_3g053340 | 80.044 | 902 | 105 | 9 | 1 | 898 | 1 | 831 | 0.0 | 1382 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064363.t1 | AT5G56930 | 35.938 | 256 | 128 | 7 | 498 | 725 | 336 | 583 | 4.36e-38 | 152 |
Find 203 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCATCTAATCTCTTTA+TGG | 0.121630 | 3.1:+40457319 | MS.gene064363:CDS |
| TTAGAAGAGGGAGAAATTTC+TGG | 0.169773 | 3.1:+40457149 | MS.gene064363:CDS |
| ATTACTGGATTCTACAATTA+TGG | 0.231119 | 3.1:+40457028 | MS.gene064363:CDS |
| TTGCCTCAGTCAGTCAATTT+TGG | 0.252130 | 3.1:+40461409 | MS.gene064363:CDS |
| AGTTTCAGAACAGATGAAAT+TGG | 0.258020 | 3.1:+40457223 | MS.gene064363:CDS |
| TATTCTGTTTCTCGCAGTTC+AGG | 0.265437 | 3.1:-40456611 | None:intergenic |
| TGCCAACATTCTTTAGCTTT+TGG | 0.265995 | 3.1:-40458925 | None:intergenic |
| TTCAGTTTCACTGCTGAATA+AGG | 0.267921 | 3.1:+40461444 | MS.gene064363:CDS |
| TGCATTTCCTTCAAGGGTAT+TGG | 0.305606 | 3.1:-40456375 | None:intergenic |
| ATTTATAAATCTAATTCCTT+TGG | 0.310961 | 3.1:-40461158 | None:intergenic |
| AGAATAAATTCTCTTAGAAT+TGG | 0.311344 | 3.1:-40461080 | None:intergenic |
| GACAGAAGATGGTGGATTAC+TGG | 0.316523 | 3.1:+40457013 | MS.gene064363:CDS |
| GGAGCCTTGTGACACAAAAT+TGG | 0.318379 | 3.1:-40460594 | None:intergenic |
| ATCAGTTCAAGAGGTAAATA+AGG | 0.326202 | 3.1:+40461633 | MS.gene064363:CDS |
| CGGTAGTGAAGTTGATTTGA+TGG | 0.337687 | 3.1:+40456635 | MS.gene064363:CDS |
| ACAGAGATCTAGGTGTTAAA+AGG | 0.338944 | 3.1:+40458875 | MS.gene064363:CDS |
| TGTTCTGGAGGCTGAAACTT+GGG | 0.340614 | 3.1:-40458898 | None:intergenic |
| TGATGCAGCAGAATTTCTTA+TGG | 0.341614 | 3.1:+40456470 | MS.gene064363:CDS |
| TTTACCATAAAGAGATTAGA+TGG | 0.345594 | 3.1:-40457323 | None:intergenic |
| TGGACAAGATTTCCCTTGTT+TGG | 0.347517 | 3.1:-40461226 | None:intergenic |
| TTTATAAATCTAATTCCTTT+GGG | 0.352802 | 3.1:-40461157 | None:intergenic |
| GGTTGTACCGTGTCTTGTTT+TGG | 0.353400 | 3.1:-40461205 | None:intergenic |
| TTCTTGAGCTGATGATCATA+TGG | 0.355100 | 3.1:-40460560 | None:intergenic |
| CTTCAAGGGTATTGGACCCT+TGG | 0.362987 | 3.1:-40456367 | None:intergenic |
| TCATTTGGAACAGATGATAA+TGG | 0.364717 | 3.1:+40456527 | MS.gene064363:CDS |
| ACCACTTTGTTCCTTTCTGC+TGG | 0.366420 | 3.1:-40457848 | None:intergenic |
| TTCAAGGGTATTGGACCCTT+GGG | 0.374920 | 3.1:-40456366 | None:intergenic |
| CAACAACCCCTCGACGTTCC+TGG | 0.376511 | 3.1:+40455006 | MS.gene064363:CDS |
| GGAGTCAACTTTCTTTCTTT+CGG | 0.379336 | 3.1:+40461322 | MS.gene064363:CDS |
| TCTGGTTTGCAAGCATTTGT+AGG | 0.381821 | 3.1:-40460971 | None:intergenic |
| CTGCTGAATAAGGATGATAA+TGG | 0.386959 | 3.1:+40461454 | MS.gene064363:CDS |
| GGGAAAGGTGGGTGAGAATA+CGG | 0.390618 | 3.1:-40454966 | None:intergenic |
| ATGATTTCTCCTTTCAAAAC+GGG | 0.394756 | 3.1:+40457281 | MS.gene064363:CDS |
| TGATGCTTGTTTATGACATC+CGG | 0.404038 | 3.1:-40461746 | None:intergenic |
| CATGTTGAACATCTGCGTTC+TGG | 0.406173 | 3.1:+40456672 | MS.gene064363:CDS |
| CATGATTTCTCCTTTCAAAA+CGG | 0.407224 | 3.1:+40457280 | MS.gene064363:CDS |
| AGTCTTGCACAAAGGATTCA+TGG | 0.412264 | 3.1:+40457382 | MS.gene064363:CDS |
| CTTGTCTCCAACACTTTCAA+TGG | 0.412681 | 3.1:-40456412 | None:intergenic |
| CACCCACCTTTCCCCTTCCA+CGG | 0.413435 | 3.1:+40454975 | MS.gene064363:CDS |
| TCCTTCTTCAATCAGAATAT+CGG | 0.414405 | 3.1:-40457123 | None:intergenic |
| AATTCACCCTCTTGAATAGT+AGG | 0.414409 | 3.1:-40456903 | None:intergenic |
| ACAACAAAAGGAAACAGAAT+TGG | 0.424477 | 3.1:+40456848 | MS.gene064363:CDS |
| GACATCATGCATTTCCTTCA+AGG | 0.425648 | 3.1:-40456382 | None:intergenic |
| AAAACGGGTATCTCCTTTCA+AGG | 0.426280 | 3.1:+40457296 | MS.gene064363:CDS |
| ATTCTGTTTCTCGCAGTTCA+GGG | 0.426340 | 3.1:-40456610 | None:intergenic |
| ACTCCCTTGGGCATGACAGC+TGG | 0.427412 | 3.1:-40461304 | None:intergenic |
| CAAGCGTGGTCCTGGTTCTC+AGG | 0.427999 | 3.1:+40458595 | MS.gene064363:CDS |
| AGTGGGAGCAAGCGTGGTCC+TGG | 0.433030 | 3.1:+40458587 | MS.gene064363:CDS |
| TTGTTCTGGAGGCTGAAACT+TGG | 0.433907 | 3.1:-40458899 | None:intergenic |
| GCAGAAAAGAACAGAGATCT+AGG | 0.434369 | 3.1:+40458865 | MS.gene064363:CDS |
| TTGAAGTCTCCTCTTTCGTC+AGG | 0.434521 | 3.1:+40460995 | MS.gene064363:CDS |
| TCCGATATTCTGATTGAAGA+AGG | 0.436958 | 3.1:+40457122 | MS.gene064363:CDS |
| TTTCAAGATAATGGCAATGT+TGG | 0.440769 | 3.1:+40456273 | MS.gene064363:intron |
| GAAAGAGGAGACTTCAACTC+TGG | 0.441262 | 3.1:-40460989 | None:intergenic |
| AACTTTCTTTCTTTCGGCAA+AGG | 0.445900 | 3.1:+40461328 | MS.gene064363:CDS |
| GATGCAGCAGAATTTCTTAT+GGG | 0.447634 | 3.1:+40456471 | MS.gene064363:CDS |
| CAAGGGTCCAATACCCTTGA+AGG | 0.451166 | 3.1:+40456368 | MS.gene064363:CDS |
| GAAGAAGGAGATTTAGAAGA+GGG | 0.451883 | 3.1:+40457137 | MS.gene064363:CDS |
| AAACAATGAAAGACAACAAA+AGG | 0.454560 | 3.1:+40456836 | MS.gene064363:CDS |
| AGTTGGAGCTTGTTGTGAAA+GGG | 0.455418 | 3.1:+40456553 | MS.gene064363:CDS |
| GGAAGAACAGAGTGGACATA+AGG | 0.459870 | 3.1:+40456932 | MS.gene064363:CDS |
| TGTGAGAATAGCGCAGTTTG+TGG | 0.460073 | 3.1:-40461508 | None:intergenic |
| CAACACTTTCAATGGTCTCA+TGG | 0.464908 | 3.1:-40456404 | None:intergenic |
| GAGAACTTTGAGTTAAAAGT+TGG | 0.467838 | 3.1:+40456327 | MS.gene064363:CDS |
| ACATTCACCACCTCTACAAC+AGG | 0.473750 | 3.1:-40460615 | None:intergenic |
| GAAATTCTGCTGCATCATCT+AGG | 0.474076 | 3.1:-40456464 | None:intergenic |
| AGAAAGAAAGTTGACTCCCT+TGG | 0.474127 | 3.1:-40461317 | None:intergenic |
| CGGTAAGGAGGGAAAGGCAT+AGG | 0.476506 | 3.1:-40454904 | None:intergenic |
| TTTGTATTTCCTGACGAAAG+AGG | 0.479190 | 3.1:-40461004 | None:intergenic |
| AGGACCACGCTTGCTCCCAC+TGG | 0.479874 | 3.1:-40458585 | None:intergenic |
| AGTGGAACATGTGCAGATAA+AGG | 0.481118 | 3.1:+40461250 | MS.gene064363:CDS |
| TCAGTCGTTCTGCCATGGAT+TGG | 0.481190 | 3.1:-40461549 | None:intergenic |
| TTGTAGGCGTAGGTATATCT+TGG | 0.482397 | 3.1:-40460955 | None:intergenic |
| GAAAGAAAGTTGACTCCCTT+GGG | 0.483104 | 3.1:-40461316 | None:intergenic |
| ATTCCTTTGGGTGCTGAGGT+AGG | 0.484739 | 3.1:-40461145 | None:intergenic |
| TAAGGCATCTGATAATTCTC+AGG | 0.485511 | 3.1:+40461651 | MS.gene064363:CDS |
| ATTAAGATGAAATGCCCTAC+TGG | 0.486147 | 3.1:+40461829 | MS.gene064363:CDS |
| ATTAAACTATCATCACAAAC+AGG | 0.487070 | 3.1:-40456585 | None:intergenic |
| AGGCGTAGGTATATCTTGGC+TGG | 0.488376 | 3.1:-40460951 | None:intergenic |
| TCACACCAATGTAGAACATA+AGG | 0.494563 | 3.1:+40461102 | MS.gene064363:CDS |
| GAGTTGGAGCTTGTTGTGAA+AGG | 0.497925 | 3.1:+40456552 | MS.gene064363:CDS |
| GGAGCAAGAAAACCAGGAAA+AGG | 0.500866 | 3.1:+40456299 | MS.gene064363:CDS |
| AGCATCAAACTTAGGCCAAA+GGG | 0.504606 | 3.1:+40461762 | MS.gene064363:CDS |
| TGATTTCAGTCGTTCTGCCA+TGG | 0.505856 | 3.1:-40461554 | None:intergenic |
| CCACAAGCATGGTGAGTACA+TGG | 0.505934 | 3.1:-40460512 | None:intergenic |
| GTTCCCGTGATCTTTGATAG+AGG | 0.509690 | 3.1:-40457411 | None:intergenic |
| CCATGTACTCACCATGCTTG+TGG | 0.513250 | 3.1:+40460512 | MS.gene064363:CDS |
| TCTTCAGAAGGCATAGTATC+CGG | 0.515316 | 3.1:+40461727 | MS.gene064363:CDS |
| AGTGAGATCGACGGTAAGGA+GGG | 0.516597 | 3.1:-40454915 | None:intergenic |
| CGGGAACTCATCTGTAGTAC+AGG | 0.516954 | 3.1:+40457427 | MS.gene064363:CDS |
| AATACCATGGACTTTGTTGA+AGG | 0.516955 | 3.1:-40460100 | None:intergenic |
| AAGTCGAAATGAATGCCCTT+TGG | 0.517002 | 3.1:-40461777 | None:intergenic |
| AGGAGAAGAAAACTAGAAAG+AGG | 0.520032 | 3.1:+40458615 | MS.gene064363:CDS |
| TTGGATGAGATTGAGAAACC+TGG | 0.520218 | 3.1:+40457242 | MS.gene064363:CDS |
| GGTAAGGAGGGAAAGGCATA+GGG | 0.522880 | 3.1:-40454903 | None:intergenic |
| AGCGTGTCCCTTTGTTGACT+CGG | 0.523684 | 3.1:-40456781 | None:intergenic |
| GTGGGTGAGAATACGGAGAA+GGG | 0.528000 | 3.1:-40454959 | None:intergenic |
| TCTTGAGCTGATGATCATAT+GGG | 0.529456 | 3.1:-40460559 | None:intergenic |
| CATTGAAAGTGTTGGAGACA+AGG | 0.530051 | 3.1:+40456413 | MS.gene064363:CDS |
| ACAGATGATAATGGACGAGT+TGG | 0.532127 | 3.1:+40456536 | MS.gene064363:CDS |
| GAGGTGCAGTCGCAAGTACA+AGG | 0.532562 | 3.1:+40456720 | MS.gene064363:CDS |
| GAAGATTGAAGTGAAACAAA+GGG | 0.532824 | 3.1:-40461709 | None:intergenic |
| CATAAACAAGCATCAAACTT+AGG | 0.534817 | 3.1:+40461754 | MS.gene064363:CDS |
| GTTTCACTTCAATCTTCAGA+AGG | 0.538082 | 3.1:+40461715 | MS.gene064363:CDS |
| TTGAGTTGAAACCGTGGAAG+GGG | 0.538449 | 3.1:-40454986 | None:intergenic |
| AACCAAAAGCTAAAGAATGT+TGG | 0.539003 | 3.1:+40458923 | MS.gene064363:CDS |
| TTCTGTTTCTCGCAGTTCAG+GGG | 0.542275 | 3.1:-40456609 | None:intergenic |
| GTCTACCTTATGTTCTACAT+TGG | 0.542393 | 3.1:-40461107 | None:intergenic |
| TGCTGATGTCAAGGATCCCA+AGG | 0.542510 | 3.1:+40456350 | MS.gene064363:CDS |
| CCTCTTGAACTGATTTACAA+TGG | 0.543268 | 3.1:-40461624 | None:intergenic |
| TGAAGAAGGAGATTTAGAAG+AGG | 0.545846 | 3.1:+40457136 | MS.gene064363:CDS |
| CGGAAGTGAGATCGACGGTA+AGG | 0.546628 | 3.1:-40454919 | None:intergenic |
| AAACCGTGGAAGGGGAAAGG+TGG | 0.548885 | 3.1:-40454978 | None:intergenic |
| GCTTGTGGCTCTTGTATGAA+AGG | 0.549682 | 3.1:+40460527 | MS.gene064363:CDS |
| AGATAATGGCAATGTTGGAA+TGG | 0.553834 | 3.1:+40456278 | MS.gene064363:intron |
| GGATTTGAGTGCCAATGCTA+TGG | 0.554777 | 3.1:+40456440 | MS.gene064363:CDS |
| GAATGTTGGCATTATATGAA+AGG | 0.554942 | 3.1:+40458937 | MS.gene064363:CDS |
| GGTGGGTGAGAATACGGAGA+AGG | 0.555718 | 3.1:-40454960 | None:intergenic |
| AGTACACCACTGAATAATCA+TGG | 0.555772 | 3.1:+40461031 | MS.gene064363:CDS |
| ACATCATGCATTTCCTTCAA+GGG | 0.556388 | 3.1:-40456381 | None:intergenic |
| GATGCCAGTGGGAGCAAGCG+TGG | 0.557169 | 3.1:+40458581 | MS.gene064363:CDS |
| AAAAGTTGGTGCTGATGTCA+AGG | 0.557812 | 3.1:+40456341 | MS.gene064363:CDS |
| TGAAGATTGAAGTGAAACAA+AGG | 0.558580 | 3.1:-40461710 | None:intergenic |
| GAAACCTCTATCAAAGATCA+CGG | 0.564467 | 3.1:+40457407 | MS.gene064363:CDS |
| TGTTGAGTTGAAACCGTGGA+AGG | 0.564884 | 3.1:-40454988 | None:intergenic |
| GGTGAGAATACGGAGAAGGG+TGG | 0.566031 | 3.1:-40454956 | None:intergenic |
| TCTAATTCCTTTGGGTGCTG+AGG | 0.566303 | 3.1:-40461149 | None:intergenic |
| GGAAACAGAATTGGTAACAC+TGG | 0.567719 | 3.1:+40456857 | MS.gene064363:CDS |
| GAGTGTTGATGCCAGCAGAA+AGG | 0.567766 | 3.1:+40457837 | MS.gene064363:CDS |
| CAATATCATTCCTTCTGCAG+TGG | 0.568846 | 3.1:-40461383 | None:intergenic |
| AAACCATCTGTCTGTGTAGA+CGG | 0.571182 | 3.1:-40456504 | None:intergenic |
| TTGCAAGCATTTGTAGGCGT+AGG | 0.572990 | 3.1:-40460965 | None:intergenic |
| ACTAGCAAGAAGCGTAGCTG+AGG | 0.573123 | 3.1:-40461686 | None:intergenic |
| CAAGGCTCCTGTTGTAGAGG+TGG | 0.574094 | 3.1:+40460608 | MS.gene064363:CDS |
| TCTATTCACTCCACTGCAGA+AGG | 0.576435 | 3.1:+40461373 | MS.gene064363:CDS |
| ACACTGGTTTGTCCTCTAGC+AGG | 0.577354 | 3.1:+40456873 | MS.gene064363:CDS |
| CCACTGAATAATCATGGCAC+TGG | 0.577523 | 3.1:+40461037 | MS.gene064363:CDS |
| CATGTGTCCGAGTCAACAAA+GGG | 0.577612 | 3.1:+40456774 | MS.gene064363:CDS |
| ATCATCTAGGACCATAGCAT+TGG | 0.578913 | 3.1:-40456451 | None:intergenic |
| CAGCAGATGGTTGATGCCAG+TGG | 0.579030 | 3.1:+40458569 | MS.gene064363:intron |
| TTGAAACCGTGGAAGGGGAA+AGG | 0.581842 | 3.1:-40454981 | None:intergenic |
| TCAAGAGGGTGAATTTGAGA+AGG | 0.583214 | 3.1:+40456911 | MS.gene064363:CDS |
| CTTAATCAACTTGACTCGGA+AGG | 0.583971 | 3.1:+40456747 | MS.gene064363:CDS |
| CATGAGACCATTGAAAGTGT+TGG | 0.585803 | 3.1:+40456405 | MS.gene064363:CDS |
| TGGAATGGAGCAAGAAAACC+AGG | 0.585974 | 3.1:+40456293 | MS.gene064363:CDS |
| GTTGAGTTGAAACCGTGGAA+GGG | 0.587144 | 3.1:-40454987 | None:intergenic |
| AGACACGGTACAACCAAACA+AGG | 0.587232 | 3.1:+40461213 | MS.gene064363:CDS |
| AAGCATCAAACTTAGGCCAA+AGG | 0.587431 | 3.1:+40461761 | MS.gene064363:CDS |
| AAGTGAGATCGACGGTAAGG+AGG | 0.587724 | 3.1:-40454916 | None:intergenic |
| TATTCCAGCTGTCATGCCCA+AGG | 0.588364 | 3.1:+40461300 | MS.gene064363:CDS |
| CTTGTGGCTCTTGTATGAAA+GGG | 0.589000 | 3.1:+40460528 | MS.gene064363:CDS |
| TCTGTTTCTCGCAGTTCAGG+GGG | 0.593070 | 3.1:-40456608 | None:intergenic |
| TGGATGAGATTGAGAAACCT+GGG | 0.594145 | 3.1:+40457243 | MS.gene064363:CDS |
| GGAGAAGAAAACTAGAAAGA+GGG | 0.596213 | 3.1:+40458616 | MS.gene064363:CDS |
| GCATTGAATATGACAGAAGA+TGG | 0.598965 | 3.1:+40457002 | MS.gene064363:CDS |
| ATTAGATGGAAAGCCTTGAA+AGG | 0.601531 | 3.1:-40457309 | None:intergenic |
| CCATTGTAAATCAGTTCAAG+AGG | 0.603579 | 3.1:+40461624 | MS.gene064363:CDS |
| TATTCCTTCAACAAAGTCCA+TGG | 0.605729 | 3.1:+40460096 | MS.gene064363:CDS |
| TCACAAGGCTCCTGTTGTAG+AGG | 0.606005 | 3.1:+40460605 | MS.gene064363:CDS |
| AACCGTGGAAGGGGAAAGGT+GGG | 0.606872 | 3.1:-40454977 | None:intergenic |
| ATTGAAAGTGTTGGAGACAA+GGG | 0.607556 | 3.1:+40456414 | MS.gene064363:CDS |
| TCATGTGTCCGAGTCAACAA+AGG | 0.608096 | 3.1:+40456773 | MS.gene064363:CDS |
| GATCGACGGTAAGGAGGGAA+AGG | 0.609933 | 3.1:-40454910 | None:intergenic |
| AGAGCTTAATCAACTTGACT+CGG | 0.611851 | 3.1:+40456743 | MS.gene064363:CDS |
| ATATCTTCCTACTATTCAAG+AGG | 0.612456 | 3.1:+40456896 | MS.gene064363:CDS |
| CATACAGGTGAAGCACCAGT+AGG | 0.616513 | 3.1:-40461844 | None:intergenic |
| CACGTCTGAAAGTGTAAGTG+AGG | 0.619677 | 3.1:+40456701 | MS.gene064363:CDS |
| TTCAGCTGATGATTCTGTGA+GGG | 0.619873 | 3.1:+40461594 | MS.gene064363:CDS |
| AAACCTCTATCAAAGATCAC+GGG | 0.622912 | 3.1:+40457408 | MS.gene064363:CDS |
| GTAGGAAGATATCCTGCTAG+AGG | 0.623148 | 3.1:-40456885 | None:intergenic |
| GGATGTACCAGGAACGTCGA+GGG | 0.627078 | 3.1:-40455013 | None:intergenic |
| GTTGGAGCTTGTTGTGAAAG+GGG | 0.628380 | 3.1:+40456554 | MS.gene064363:CDS |
| ACTTGATGTACTACTAATCA+CGG | 0.640241 | 3.1:-40456811 | None:intergenic |
| ATTCCAGCTGTCATGCCCAA+GGG | 0.640386 | 3.1:+40461301 | MS.gene064363:CDS |
| ATACAGGTGAAGCACCAGTA+GGG | 0.641549 | 3.1:-40461843 | None:intergenic |
| AAACCAAAATTGACTGACTG+AGG | 0.641965 | 3.1:-40461412 | None:intergenic |
| TTGAATATGACAGAAGATGG+TGG | 0.642220 | 3.1:+40457005 | MS.gene064363:CDS |
| CACATTTGATGTGTCTTCTG+CGG | 0.643979 | 3.1:+40457193 | MS.gene064363:CDS |
| AAGTGTTGGAGACAAGGGCA+AGG | 0.644118 | 3.1:+40456419 | MS.gene064363:CDS |
| GAACCGTCTACACAGACAGA+TGG | 0.647822 | 3.1:+40456501 | MS.gene064363:CDS |
| AGCAGATGGTTGATGCCAGT+GGG | 0.654439 | 3.1:+40458570 | MS.gene064363:intron |
| GATGTACCAGGAACGTCGAG+GGG | 0.658609 | 3.1:-40455012 | None:intergenic |
| GATGTTCAACATGTTCTACT+CGG | 0.659808 | 3.1:-40456662 | None:intergenic |
| AAGCCTACCTCAGCACCCAA+AGG | 0.664036 | 3.1:+40461142 | MS.gene064363:CDS |
| TCATACAAGAGCCACAAGCA+TGG | 0.664244 | 3.1:-40460523 | None:intergenic |
| TATCTTCCTACTATTCAAGA+GGG | 0.665073 | 3.1:+40456897 | MS.gene064363:CDS |
| TGTGACACAAAATTGGAACA+AGG | 0.672044 | 3.1:-40460587 | None:intergenic |
| GCTGATGTCAAGGATCCCAA+GGG | 0.678207 | 3.1:+40456351 | MS.gene064363:CDS |
| CCAGTGCCATGATTATTCAG+TGG | 0.679404 | 3.1:-40461037 | None:intergenic |
| GCCAGCAGAAAGGAACAAAG+TGG | 0.681605 | 3.1:+40457847 | MS.gene064363:CDS |
| AGGATGTACCAGGAACGTCG+AGG | 0.685425 | 3.1:-40455014 | None:intergenic |
| TAGTACACCAAAACAAGACA+CGG | 0.696951 | 3.1:+40461198 | MS.gene064363:CDS |
| ATTCAGCTGATGATTCTGTG+AGG | 0.697116 | 3.1:+40461593 | MS.gene064363:CDS |
| GACACGGTACAACCAAACAA+GGG | 0.697668 | 3.1:+40461214 | MS.gene064363:CDS |
| TTTGAGAAGGAAGAACAGAG+TGG | 0.707706 | 3.1:+40456924 | MS.gene064363:CDS |
| GACTGCGGAAGTGAGATCGA+CGG | 0.713161 | 3.1:-40454924 | None:intergenic |
| GGGTTGTTGAGTTGAAACCG+TGG | 0.716296 | 3.1:-40454992 | None:intergenic |
| GGGTGGTGTAAGTATGACTG+CGG | 0.717820 | 3.1:-40454939 | None:intergenic |
| AGATAAAGGTCAAAATACTG+CGG | 0.725271 | 3.1:+40461264 | MS.gene064363:CDS |
| TATGAAAGGAAGATGCCATG+AGG | 0.725457 | 3.1:+40458951 | MS.gene064363:CDS |
| AACTGCGAGAAACAGAATAG+CGG | 0.734818 | 3.1:+40456615 | MS.gene064363:CDS |
| TATCTGCACATGTTCCACTG+TGG | 0.736675 | 3.1:-40461246 | None:intergenic |
| AAGGGAAATCTTGTCCACAG+TGG | 0.738177 | 3.1:+40461232 | MS.gene064363:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 40454877 | 40461867 | 40454877 | ID=MS.gene064363 |
| chr3.1 | mRNA | 40454877 | 40461867 | 40454877 | ID=MS.gene064363.t1;Parent=MS.gene064363 |
| chr3.1 | exon | 40454877 | 40455027 | 40454877 | ID=MS.gene064363.t1.exon1;Parent=MS.gene064363.t1 |
| chr3.1 | CDS | 40454877 | 40455027 | 40454877 | ID=cds.MS.gene064363.t1;Parent=MS.gene064363.t1 |
| chr3.1 | exon | 40456280 | 40457448 | 40456280 | ID=MS.gene064363.t1.exon2;Parent=MS.gene064363.t1 |
| chr3.1 | CDS | 40456280 | 40457448 | 40456280 | ID=cds.MS.gene064363.t1;Parent=MS.gene064363.t1 |
| chr3.1 | exon | 40457835 | 40457900 | 40457835 | ID=MS.gene064363.t1.exon3;Parent=MS.gene064363.t1 |
| chr3.1 | CDS | 40457835 | 40457900 | 40457835 | ID=cds.MS.gene064363.t1;Parent=MS.gene064363.t1 |
| chr3.1 | exon | 40458572 | 40458637 | 40458572 | ID=MS.gene064363.t1.exon4;Parent=MS.gene064363.t1 |
| chr3.1 | CDS | 40458572 | 40458637 | 40458572 | ID=cds.MS.gene064363.t1;Parent=MS.gene064363.t1 |
| chr3.1 | exon | 40458844 | 40458972 | 40458844 | ID=MS.gene064363.t1.exon5;Parent=MS.gene064363.t1 |
| chr3.1 | CDS | 40458844 | 40458972 | 40458844 | ID=cds.MS.gene064363.t1;Parent=MS.gene064363.t1 |
| chr3.1 | exon | 40460067 | 40460117 | 40460067 | ID=MS.gene064363.t1.exon6;Parent=MS.gene064363.t1 |
| chr3.1 | CDS | 40460067 | 40460117 | 40460067 | ID=cds.MS.gene064363.t1;Parent=MS.gene064363.t1 |
| chr3.1 | exon | 40460512 | 40460652 | 40460512 | ID=MS.gene064363.t1.exon7;Parent=MS.gene064363.t1 |
| chr3.1 | CDS | 40460512 | 40460652 | 40460512 | ID=cds.MS.gene064363.t1;Parent=MS.gene064363.t1 |
| chr3.1 | exon | 40460944 | 40461867 | 40460944 | ID=MS.gene064363.t1.exon8;Parent=MS.gene064363.t1 |
| chr3.1 | CDS | 40460944 | 40461867 | 40460944 | ID=cds.MS.gene064363.t1;Parent=MS.gene064363.t1 |
| Gene Sequence |
| Protein sequence |
