Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064371.t1 | XP_020230547.1 | 91.4 | 304 | 25 | 1 | 2 | 305 | 21 | 323 | 9.70E-152 | 546.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064371.t1 | Q6IP65 | 69.6 | 270 | 82 | 0 | 26 | 295 | 24 | 293 | 4.9e-104 | 379.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064371.t1 | A0A151SBL7 | 91.4 | 304 | 25 | 1 | 2 | 305 | 21 | 323 | 7.0e-152 | 546.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064371.t1 | TR | Rcd1-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064371.t1 | MTR_3g053170 | 96.441 | 281 | 10 | 0 | 25 | 305 | 26 | 306 | 0.0 | 558 |
| MS.gene064371.t1 | MTR_8g106940 | 59.060 | 298 | 119 | 1 | 6 | 303 | 22 | 316 | 5.87e-119 | 345 |
| MS.gene064371.t1 | MTR_6g065170 | 60.274 | 292 | 113 | 1 | 6 | 297 | 22 | 310 | 1.68e-116 | 338 |
| MS.gene064371.t1 | MTR_5g093460 | 59.559 | 272 | 109 | 1 | 25 | 296 | 167 | 437 | 1.14e-106 | 318 |
| MS.gene064371.t1 | MTR_5g093460 | 60.902 | 133 | 51 | 1 | 22 | 154 | 2 | 133 | 5.69e-46 | 161 |
| MS.gene064371.t1 | MTR_3g018640 | 56.272 | 279 | 115 | 1 | 17 | 288 | 23 | 301 | 1.18e-101 | 300 |
| MS.gene064371.t1 | MTR_1g056470 | 65.611 | 221 | 76 | 0 | 24 | 244 | 33 | 253 | 1.29e-100 | 296 |
| MS.gene064371.t1 | MTR_1g043540 | 56.000 | 125 | 54 | 1 | 129 | 253 | 9 | 132 | 4.14e-37 | 129 |
| MS.gene064371.t1 | MTR_1g043500 | 49.206 | 63 | 31 | 1 | 183 | 244 | 3 | 65 | 2.41e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064371.t1 | AT3G20800 | 82.450 | 302 | 51 | 2 | 2 | 303 | 17 | 316 | 0.0 | 506 |
| MS.gene064371.t1 | AT5G12980 | 78.596 | 285 | 55 | 2 | 22 | 305 | 32 | 311 | 2.47e-163 | 457 |
| MS.gene064371.t1 | AT2G32550 | 34.432 | 273 | 163 | 5 | 26 | 285 | 51 | 320 | 2.88e-44 | 154 |
| MS.gene064371.t1 | AT2G32550 | 35.060 | 251 | 149 | 4 | 46 | 285 | 34 | 281 | 3.41e-42 | 147 |
| MS.gene064371.t1 | AT2G32550 | 34.934 | 229 | 135 | 4 | 68 | 285 | 1 | 226 | 3.70e-37 | 132 |
Find 75 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGCTGTTGGTCGAGTTCT+TGG | 0.255938 | 3.1:-40309759 | MS.gene064371:CDS |
| AGGAATAGCATCCTTGTATC+AGG | 0.295510 | 3.1:+40312064 | None:intergenic |
| TGGATTTGCTTGTTGTGTTC+AGG | 0.306518 | 3.1:+40311093 | None:intergenic |
| TGCAGCCACTTCCTAGTTGT+TGG | 0.322430 | 3.1:+40308872 | None:intergenic |
| TCCCCTGTGCCTGCGCACTA+TGG | 0.322674 | 3.1:-40310618 | MS.gene064371:CDS |
| AGAAGGCATCGTGCCATCTT+TGG | 0.344378 | 3.1:+40314385 | None:intergenic |
| AGAAAGTAACATTACCATTC+AGG | 0.363182 | 3.1:+40312044 | None:intergenic |
| TTCACAATGTTGGAGGGAAT+CGG | 0.370583 | 3.1:-40308841 | MS.gene064371:CDS |
| GCAGCCACTTCCTAGTTGTT+GGG | 0.391810 | 3.1:+40308873 | None:intergenic |
| CTTTGGCGGCAGCTGAACCC+TGG | 0.392285 | 3.1:+40314402 | None:intergenic |
| CCATTGCTATGGAATTCATT+TGG | 0.401738 | 3.1:-40313543 | MS.gene064371:CDS |
| GATTGTGCTGGAGTGAGGTT+GGG | 0.411334 | 3.1:+40312596 | None:intergenic |
| TGATTGTGCTGGAGTGAGGT+TGG | 0.420676 | 3.1:+40312595 | None:intergenic |
| TTTGTTAGACGATGTGGGCT+TGG | 0.423511 | 3.1:-40309811 | MS.gene064371:CDS |
| GTGCCTGCGCACTATGGAGA+TGG | 0.431875 | 3.1:-40310612 | MS.gene064371:CDS |
| TACTCAGGGTGCCACTGCCC+AGG | 0.432219 | 3.1:-40314420 | MS.gene064371:CDS |
| GCTGTCTTCCTGACATGTTA+AGG | 0.435901 | 3.1:-40309489 | MS.gene064371:CDS |
| CCTCCTCCACCTTGCAGTGC+AGG | 0.438234 | 3.1:+40308815 | None:intergenic |
| CACACTCGATTTGATTGTGC+TGG | 0.438779 | 3.1:+40312584 | None:intergenic |
| TACTTGAGGCTTACTAGTCT+TGG | 0.443121 | 3.1:-40311059 | MS.gene064371:CDS |
| TCACAATGTTGGAGGGAATC+GGG | 0.446766 | 3.1:-40308840 | MS.gene064371:CDS |
| CAAATGAATTCCATAGCAAT+GGG | 0.454592 | 3.1:+40313544 | None:intergenic |
| CAATGCTCTTGCCCTGCTCC+AGG | 0.456652 | 3.1:-40312561 | MS.gene064371:intron |
| TACTATTGCAGCACTTCTGC+AGG | 0.460816 | 3.1:-40313520 | MS.gene064371:intron |
| CCTCAAGTACTCAAAAGGTC+TGG | 0.463934 | 3.1:+40311073 | None:intergenic |
| TCTCCATAGTGCGCAGGCAC+AGG | 0.464066 | 3.1:+40310615 | None:intergenic |
| CTGTCTTCCTGACATGTTAA+GGG | 0.464598 | 3.1:-40309488 | MS.gene064371:CDS |
| GGTTCAGCTGCCGCCAAAGA+TGG | 0.468277 | 3.1:-40314398 | MS.gene064371:CDS |
| CCTGCACTGCAAGGTGGAGG+AGG | 0.475249 | 3.1:-40308815 | MS.gene064371:CDS |
| AAGTGACATGCCGACTACTC+AGG | 0.479507 | 3.1:-40314435 | None:intergenic |
| GGCAGCTGAACCCTGGGCAG+TGG | 0.482184 | 3.1:+40314409 | None:intergenic |
| AAGATCTCGCCCCATTGCTA+TGG | 0.486631 | 3.1:-40313554 | MS.gene064371:CDS |
| TTTGGCGGCAGCTGAACCCT+GGG | 0.487684 | 3.1:+40314403 | None:intergenic |
| GTAAGCCTCAAGTACTCAAA+AGG | 0.495117 | 3.1:+40311068 | None:intergenic |
| GTAGCATCCCTTAACATGTC+AGG | 0.500922 | 3.1:+40309481 | None:intergenic |
| TGCCTGCGCACTATGGAGAT+GGG | 0.509168 | 3.1:-40310611 | MS.gene064371:CDS |
| AAACTCATCTAACCTGGAGC+AGG | 0.510559 | 3.1:+40312549 | None:intergenic |
| GTTCCTGCACTGCAAGGTGG+AGG | 0.514765 | 3.1:-40308818 | MS.gene064371:CDS |
| CAACAACTGATTCACAATGT+TGG | 0.517621 | 3.1:-40308851 | MS.gene064371:CDS |
| AGGCATCGTGCCATCTTTGG+CGG | 0.523019 | 3.1:+40314388 | None:intergenic |
| CCAAATGAATTCCATAGCAA+TGG | 0.523846 | 3.1:+40313543 | None:intergenic |
| TTGCTTGTTGTGTTCAGGAA+CGG | 0.537424 | 3.1:+40311098 | None:intergenic |
| CTCCATAGTGCGCAGGCACA+GGG | 0.541034 | 3.1:+40310616 | None:intergenic |
| ACTCAGGGTGCCACTGCCCA+GGG | 0.541700 | 3.1:-40314419 | MS.gene064371:CDS |
| CTTACTAGTCTTGGTGTCAT+CGG | 0.543029 | 3.1:-40311050 | MS.gene064371:CDS |
| GGGGAGTGAGCTCTCTAAAA+CGG | 0.547334 | 3.1:-40310591 | MS.gene064371:intron |
| TAGCATCTCACCCTGATACA+AGG | 0.553761 | 3.1:-40312075 | MS.gene064371:CDS |
| ACAAGGATGCTATTCCTGAA+TGG | 0.556336 | 3.1:-40312058 | MS.gene064371:intron |
| ATGAGTTGTTCCGCAGCAGA+AGG | 0.561186 | 3.1:+40314368 | None:intergenic |
| TGCTTCAACAGACGAGATGA+TGG | 0.564466 | 3.1:+40309708 | None:intergenic |
| TCCCCATCTCCATAGTGCGC+AGG | 0.574764 | 3.1:+40310609 | None:intergenic |
| AACTGATTCACAATGTTGGA+GGG | 0.575243 | 3.1:-40308847 | MS.gene064371:CDS |
| AGGTTGGGAGGAGACAAAAC+AGG | 0.578541 | 3.1:+40312611 | None:intergenic |
| GCAGTGGCACCCTGAGTAGT+CGG | 0.581397 | 3.1:+40314425 | None:intergenic |
| CAACTGATTCACAATGTTGG+AGG | 0.581651 | 3.1:-40308848 | MS.gene064371:CDS |
| TTCAGGAGGACCCAACAACT+AGG | 0.584464 | 3.1:-40308883 | MS.gene064371:intron |
| AGGACCCAACAACTAGGAAG+TGG | 0.596471 | 3.1:-40308877 | MS.gene064371:CDS |
| AGTGACATGCCGACTACTCA+GGG | 0.597624 | 3.1:-40314434 | None:intergenic |
| TGGCACGATGCCTTCTGCTG+CGG | 0.599747 | 3.1:-40314378 | MS.gene064371:CDS |
| AATCGGGTTCCTGCACTGCA+AGG | 0.603945 | 3.1:-40308824 | MS.gene064371:CDS |
| TGTGCTGGAGTGAGGTTGGG+AGG | 0.609651 | 3.1:+40312599 | None:intergenic |
| TGCACTTCGTGAGCTCTGCA+AGG | 0.610341 | 3.1:-40314312 | MS.gene064371:intron |
| TGGTCGAGTTCTTGGAAACA+TGG | 0.623015 | 3.1:-40309751 | MS.gene064371:CDS |
| GATTTGATTGTGCTGGAGTG+AGG | 0.624347 | 3.1:+40312591 | None:intergenic |
| AACTCATCTAACCTGGAGCA+GGG | 0.624665 | 3.1:+40312550 | None:intergenic |
| GGAATAGCATCCTTGTATCA+GGG | 0.625986 | 3.1:+40312065 | None:intergenic |
| TTCGTCTGTCAGATAACCCG+AGG | 0.629082 | 3.1:-40309668 | MS.gene064371:intron |
| TGTCATCGGTGCACTAGTGA+AGG | 0.630356 | 3.1:-40311036 | MS.gene064371:intron |
| GCCTGCGCACTATGGAGATG+GGG | 0.643265 | 3.1:-40310610 | MS.gene064371:CDS |
| CGGGTTCCTGCACTGCAAGG+TGG | 0.654150 | 3.1:-40308821 | MS.gene064371:CDS |
| TCCATAGTGCGCAGGCACAG+GGG | 0.677780 | 3.1:+40310617 | None:intergenic |
| TCACCAGGTTGATGATACTG+AGG | 0.679946 | 3.1:-40310672 | MS.gene064371:intron |
| TCGAGTTCTTGGAAACATGG+TGG | 0.707168 | 3.1:-40309748 | MS.gene064371:CDS |
| AGGAACGGATACAAATACAG+AGG | 0.734864 | 3.1:+40311113 | None:intergenic |
| AAATGAATTCCATAGCAATG+GGG | 0.758849 | 3.1:+40313545 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAACTAAAATAAATG+TGG | + | chr3.1:40310467-40310486 | None:intergenic | 10.0% |
| !! | ATATTCAATATAAAAAGAAA+AGG | + | chr3.1:40311967-40311986 | None:intergenic | 10.0% |
| !! | TAATATAAAACAAAATATAG+AGG | + | chr3.1:40312413-40312432 | None:intergenic | 10.0% |
| !!! | AAATTATTGAATACAATTTT+TGG | - | chr3.1:40313211-40313230 | MS.gene064371:intron | 10.0% |
| !!! | TTCTTTTTATATTGAATATA+AGG | - | chr3.1:40311968-40311987 | MS.gene064371:intron | 10.0% |
| !! | AAGAACATAAAAAAAAATGA+CGG | - | chr3.1:40311077-40311096 | MS.gene064371:CDS | 15.0% |
| !! | ATAAATAGTTTAGATATTGT+AGG | + | chr3.1:40313902-40313921 | None:intergenic | 15.0% |
| !! | ATTAAAAAAGTCAAATTTGT+CGG | + | chr3.1:40309261-40309280 | None:intergenic | 15.0% |
| !! | ATTATCTCATATACATTAAT+AGG | + | chr3.1:40313316-40313335 | None:intergenic | 15.0% |
| !! | TAATTATCAAATTTCAAAGT+TGG | + | chr3.1:40310326-40310345 | None:intergenic | 15.0% |
| !! | TTATCTCATATACATTAATA+GGG | + | chr3.1:40313315-40313334 | None:intergenic | 15.0% |
| !!! | AATATTTTAGCAAAATTTCA+AGG | - | chr3.1:40310799-40310818 | MS.gene064371:intron | 15.0% |
| !!! | AGAAAAAAGTATAATATCTA+TGG | + | chr3.1:40311019-40311038 | None:intergenic | 15.0% |
| !!! | ATGTAATCATTATTTGTTAA+TGG | - | chr3.1:40309472-40309491 | MS.gene064371:CDS | 15.0% |
| !!! | CTTTTATTGTATAGATTTTA+AGG | - | chr3.1:40313255-40313274 | MS.gene064371:intron | 15.0% |
| !!! | TAACAATTTATTAGTTTTCT+TGG | + | chr3.1:40313854-40313873 | None:intergenic | 15.0% |
| !!! | TTAAATACTATTTTGTCATT+AGG | - | chr3.1:40313186-40313205 | MS.gene064371:intron | 15.0% |
| !!! | TTGATATTTTATTTTCTTTC+AGG | - | chr3.1:40310567-40310586 | MS.gene064371:intron | 15.0% |
| !!! | TTGTTTACAATACTTATTTT+TGG | - | chr3.1:40314303-40314322 | MS.gene064371:intron | 15.0% |
| !! | AAAAAAATTCAAAAGCAACA+AGG | + | chr3.1:40311877-40311896 | None:intergenic | 20.0% |
| !! | AAAAGAATGATCAAGTTAAA+AGG | + | chr3.1:40311566-40311585 | None:intergenic | 20.0% |
| !! | AAAGAATGATCAAGTTAAAA+GGG | + | chr3.1:40311565-40311584 | None:intergenic | 20.0% |
| !! | AAAGTTTCAAAAGAAACAAA+AGG | + | chr3.1:40309930-40309949 | None:intergenic | 20.0% |
| !! | AACTTTCTCCTATTATTTAA+AGG | - | chr3.1:40311806-40311825 | MS.gene064371:intron | 20.0% |
| !! | AAGTTTCAAAAGAAACAAAA+GGG | + | chr3.1:40309929-40309948 | None:intergenic | 20.0% |
| !! | CAAAATTAACTAACATTTGA+AGG | + | chr3.1:40309182-40309201 | None:intergenic | 20.0% |
| !! | CTTTAACTAATAAAAACCAA+TGG | + | chr3.1:40312017-40312036 | None:intergenic | 20.0% |
| !! | TTAGTTAAAGATAGTTCATA+AGG | - | chr3.1:40312027-40312046 | MS.gene064371:intron | 20.0% |
| !!! | AATCTGGTATTCTAAAATAA+AGG | + | chr3.1:40308943-40308962 | None:intergenic | 20.0% |
| !!! | ACTTAGTTTTGAATATATTG+TGG | - | chr3.1:40310214-40310233 | MS.gene064371:intron | 20.0% |
| !!! | ATCTGGTATTCTAAAATAAA+GGG | + | chr3.1:40308942-40308961 | None:intergenic | 20.0% |
| !!! | ATTTTTGGTTTTGTTTATTC+AGG | - | chr3.1:40314318-40314337 | MS.gene064371:CDS | 20.0% |
| !!! | GGAGTAATTTTTAATCAATT+AGG | - | chr3.1:40314062-40314081 | MS.gene064371:intron | 20.0% |
| !!! | TCAATATGTTATTTGAGTAA+TGG | - | chr3.1:40313144-40313163 | MS.gene064371:intron | 20.0% |
| !!! | TTGTTTCTTTTGAAACTTTT+TGG | - | chr3.1:40309931-40309950 | MS.gene064371:intron | 20.0% |
| !!! | TTTTTTTTTTTGTTAATGCG+CGG | - | chr3.1:40309099-40309118 | MS.gene064371:intron | 20.0% |
| ! | AAAAACTGTAACAACAAACA+AGG | + | chr3.1:40309321-40309340 | None:intergenic | 25.0% |
| ! | AAAACAGACTATTGCATATT+TGG | + | chr3.1:40314133-40314152 | None:intergenic | 25.0% |
| ! | AAAACTGTGCATCTAAAAAT+TGG | - | chr3.1:40310387-40310406 | MS.gene064371:intron | 25.0% |
| ! | AAATATCAAATCCAACTTAG+TGG | + | chr3.1:40310556-40310575 | None:intergenic | 25.0% |
| ! | AATAGTGCTATGGAAATTAT+AGG | - | chr3.1:40311397-40311416 | MS.gene064371:intron | 25.0% |
| ! | AATCACCAAACATTGAAATT+TGG | - | chr3.1:40310751-40310770 | MS.gene064371:intron | 25.0% |
| ! | ATCACAGCAAAAAAAAAGAA+TGG | + | chr3.1:40313811-40313830 | None:intergenic | 25.0% |
| ! | ATTTATTATCTAATTCCACC+TGG | - | chr3.1:40313916-40313935 | MS.gene064371:intron | 25.0% |
| ! | ATTTCTCCTTATGTTGAATT+TGG | - | chr3.1:40309436-40309455 | MS.gene064371:intron | 25.0% |
| ! | CATCTAAGTAATACAGTAAT+AGG | - | chr3.1:40311373-40311392 | MS.gene064371:intron | 25.0% |
| ! | CTAAAACTATGCTTTATGTT+GGG | - | chr3.1:40309964-40309983 | MS.gene064371:intron | 25.0% |
| ! | CTATTACTGTATTACTTAGA+TGG | + | chr3.1:40311375-40311394 | None:intergenic | 25.0% |
| ! | GATTAGAGTTTCAACAAATT+TGG | - | chr3.1:40308959-40308978 | MS.gene064371:intron | 25.0% |
| ! | GTGAAGAAATCATTAACAAT+AGG | - | chr3.1:40314174-40314193 | MS.gene064371:intron | 25.0% |
| ! | GTGTTCTTAAAAATCAAAGT+TGG | - | chr3.1:40311281-40311300 | MS.gene064371:intron | 25.0% |
| ! | GTTCAGATAATCAATTGATT+AGG | - | chr3.1:40310982-40311001 | MS.gene064371:intron | 25.0% |
| ! | TCTAATCATGGAAAAATAGT+TGG | + | chr3.1:40310303-40310322 | None:intergenic | 25.0% |
| ! | TGACTACAGATTAATATGAA+AGG | + | chr3.1:40309776-40309795 | None:intergenic | 25.0% |
| ! | TTTATGTTGGGTTTGAATAT+TGG | - | chr3.1:40309976-40309995 | MS.gene064371:intron | 25.0% |
| ! | TTTCTCCTTATGTTGAATTT+GGG | - | chr3.1:40309437-40309456 | MS.gene064371:intron | 25.0% |
| ! | TTTGAATGTGTAAGATACTA+TGG | - | chr3.1:40310023-40310042 | MS.gene064371:intron | 25.0% |
| !! | AAAAGTATAATATCTATGGC+TGG | + | chr3.1:40311015-40311034 | None:intergenic | 25.0% |
| !! | ATTCTATTTGTCACTTATGT+AGG | + | chr3.1:40314037-40314056 | None:intergenic | 25.0% |
| !! | CTTTTATGTGTATCATACTA+TGG | - | chr3.1:40310060-40310079 | MS.gene064371:intron | 25.0% |
| !! | GATTCGACAAAATTTTACAT+TGG | + | chr3.1:40314097-40314116 | None:intergenic | 25.0% |
| !! | GTATTTTGCTGAAATGTTTT+GGG | - | chr3.1:40311310-40311329 | MS.gene064371:intron | 25.0% |
| !! | GTTTTATGTATTGTAGAAGA+GGG | - | chr3.1:40309632-40309651 | MS.gene064371:intron | 25.0% |
| !! | TGTATTTTGCTGAAATGTTT+TGG | - | chr3.1:40311309-40311328 | MS.gene064371:intron | 25.0% |
| !! | TGTTTTATGTATTGTAGAAG+AGG | - | chr3.1:40309631-40309650 | MS.gene064371:intron | 25.0% |
| !! | TTTTAGCAAAATTTCAAGGT+GGG | - | chr3.1:40310803-40310822 | MS.gene064371:intron | 25.0% |
| !! | TTTTCCAAACTTTAATGTAG+CGG | - | chr3.1:40310102-40310121 | MS.gene064371:intron | 25.0% |
| !!! | AATTTGTTGAAACTCTAATC+TGG | + | chr3.1:40308959-40308978 | None:intergenic | 25.0% |
| !!! | ATTCTAAAATAAAGGGGAAA+CGG | + | chr3.1:40308935-40308954 | None:intergenic | 25.0% |
| !!! | ATTTTAGCAAAATTTCAAGG+TGG | - | chr3.1:40310802-40310821 | MS.gene064371:intron | 25.0% |
| !!! | GAATACAATTTTTGGTCATT+AGG | - | chr3.1:40313219-40313238 | MS.gene064371:intron | 25.0% |
| !!! | GATATTCTTGTTTTACCTTT+TGG | - | chr3.1:40313043-40313062 | MS.gene064371:intron | 25.0% |
| !!! | TCTGGTATTCTAAAATAAAG+GGG | + | chr3.1:40308941-40308960 | None:intergenic | 25.0% |
| !!! | TTTTTTTCAAAGTGACTGAA+TGG | + | chr3.1:40314272-40314291 | None:intergenic | 25.0% |
| AAATGAATTCCATAGCAATG+GGG | + | chr3.1:40309676-40309695 | None:intergenic | 30.0% | |
| AAGTGACAAATAGAATCAGA+GGG | - | chr3.1:40314041-40314060 | MS.gene064371:intron | 30.0% | |
| AATGATTGATCACATCAACT+TGG | + | chr3.1:40311463-40311482 | None:intergenic | 30.0% | |
| AATGTAACCGTATGAAATGT+AGG | + | chr3.1:40312258-40312277 | None:intergenic | 30.0% | |
| AATGTTAATCGAACATTGAC+AGG | + | chr3.1:40312745-40312764 | None:intergenic | 30.0% | |
| AATTCAAAAGCAACAAGGAA+AGG | + | chr3.1:40311872-40311891 | None:intergenic | 30.0% | |
| AATTCATCCAAACAAGTTGT+TGG | + | chr3.1:40312376-40312395 | None:intergenic | 30.0% | |
| ACAGCAAAAAAAAAGAATGG+AGG | + | chr3.1:40313808-40313827 | None:intergenic | 30.0% | |
| ACCAAGAGTTTGATTAATGA+TGG | + | chr3.1:40313676-40313695 | None:intergenic | 30.0% | |
| ACTCAAAAATGCAAATCAAC+AGG | + | chr3.1:40309825-40309844 | None:intergenic | 30.0% | |
| AGAAAGTAACATTACCATTC+AGG | + | chr3.1:40311177-40311196 | None:intergenic | 30.0% | |
| AGTAATAGGAAATAGTGCTA+TGG | - | chr3.1:40311387-40311406 | MS.gene064371:intron | 30.0% | |
| AGTGGCAACATAAAATAAAC+TGG | + | chr3.1:40313283-40313302 | None:intergenic | 30.0% | |
| ATAAGCTCAACAATAGAGAT+AGG | + | chr3.1:40309743-40309762 | None:intergenic | 30.0% | |
| CAAATGAATTCCATAGCAAT+GGG | + | chr3.1:40309677-40309696 | None:intergenic | 30.0% | |
| CAGCAAAAAAAAAGAATGGA+GGG | + | chr3.1:40313807-40313826 | None:intergenic | 30.0% | |
| CCTAAAACTATGCTTTATGT+TGG | - | chr3.1:40309963-40309982 | MS.gene064371:intron | 30.0% | |
| CTATGCTTCAAATATTCTGA+CGG | - | chr3.1:40311245-40311264 | MS.gene064371:intron | 30.0% | |
| CTATGGAAATTATAGGATTG+AGG | - | chr3.1:40311404-40311423 | MS.gene064371:intron | 30.0% | |
| CTCAAAAATGCAAATCAACA+GGG | + | chr3.1:40309824-40309843 | None:intergenic | 30.0% | |
| CTGTATTACTTAGATGGAAA+TGG | + | chr3.1:40311369-40311388 | None:intergenic | 30.0% | |
| GATGTCCAAATTTCAATGTT+TGG | + | chr3.1:40310759-40310778 | None:intergenic | 30.0% | |
| GTTACCAAAACGAAGAAATA+GGG | + | chr3.1:40310262-40310281 | None:intergenic | 30.0% | |
| TAAGTGACAAATAGAATCAG+AGG | - | chr3.1:40314040-40314059 | MS.gene064371:intron | 30.0% | |
| TATGCTTCAAATATTCTGAC+GGG | - | chr3.1:40311246-40311265 | MS.gene064371:intron | 30.0% | |
| TGACTTTAAACATGTAGTAG+CGG | + | chr3.1:40312855-40312874 | None:intergenic | 30.0% | |
| TGGGGTAACCTTTAAATAAT+AGG | + | chr3.1:40311817-40311836 | None:intergenic | 30.0% | |
| TTAATATCTTGTTGCAGAGA+TGG | - | chr3.1:40309138-40309157 | MS.gene064371:intron | 30.0% | |
| TTACCAAAACGAAGAAATAG+GGG | + | chr3.1:40310261-40310280 | None:intergenic | 30.0% | |
| TTCTCCTTATGTTGAATTTG+GGG | - | chr3.1:40309438-40309457 | MS.gene064371:intron | 30.0% | |
| TTGAATGTCAAAAGATCCAT+TGG | - | chr3.1:40311998-40312017 | MS.gene064371:intron | 30.0% | |
| TTGAGTAATGGCATTTGTAT+GGG | - | chr3.1:40313156-40313175 | MS.gene064371:intron | 30.0% | |
| TTTATTGCAGAGAAAAAACC+AGG | + | chr3.1:40313937-40313956 | None:intergenic | 30.0% | |
| TTTGAGTAATGGCATTTGTA+TGG | - | chr3.1:40313155-40313174 | MS.gene064371:intron | 30.0% | |
| TTTGGAAACTAACAAAACCA+AGG | + | chr3.1:40312937-40312956 | None:intergenic | 30.0% | |
| TTTGGATTGAAAACAAAGTG+CGG | - | chr3.1:40308977-40308996 | MS.gene064371:intron | 30.0% | |
| ! | AAACTGATTTAGCATGTGTT+TGG | + | chr3.1:40312955-40312974 | None:intergenic | 30.0% |
| ! | AAAGATTTTGTTAGACGATG+TGG | - | chr3.1:40313401-40313420 | MS.gene064371:intron | 30.0% |
| ! | AAATTTTACATTGGATGTCG+AGG | + | chr3.1:40314088-40314107 | None:intergenic | 30.0% |
| ! | AAGATTTTGTTAGACGATGT+GGG | - | chr3.1:40313402-40313421 | MS.gene064371:intron | 30.0% |
| ! | CAGCTCTAACATTAAAGATT+TGG | + | chr3.1:40314241-40314260 | None:intergenic | 30.0% |
| ! | CCAACATAAAGCATAGTTTT+AGG | + | chr3.1:40309966-40309985 | None:intergenic | 30.0% |
| ! | GGATTTTGTGATGAATCTTT+CGG | + | chr3.1:40312322-40312341 | None:intergenic | 30.0% |
| ! | GTTTGAATTGTCCACATTTT+TGG | - | chr3.1:40311515-40311534 | MS.gene064371:intron | 30.0% |
| ! | TAATGATGGCATTTGAAACT+TGG | + | chr3.1:40313662-40313681 | None:intergenic | 30.0% |
| ! | TATATCACGATGATTTGTCT+TGG | - | chr3.1:40309560-40309579 | MS.gene064371:intron | 30.0% |
| ! | TTTCAAAGTTGGTCTAATCA+TGG | + | chr3.1:40310315-40310334 | None:intergenic | 30.0% |
| !! | CAGAAAAGCAATTTGTTAGA+TGG | + | chr3.1:40311696-40311715 | None:intergenic | 30.0% |
| !! | CTGTTTTTCGTTGAGTAAAA+TGG | - | chr3.1:40314146-40314165 | MS.gene064371:intron | 30.0% |
| !!! | TTTGGTTTTGTTTATTCAGG+AGG | - | chr3.1:40314321-40314340 | MS.gene064371:CDS | 30.0% |
| AAACAGATTCTCACTCAAAC+GGG | + | chr3.1:40309394-40309413 | None:intergenic | 35.0% | |
| AAAGAAACAAAAGGGAACAC+CGG | + | chr3.1:40309921-40309940 | None:intergenic | 35.0% | |
| ACTGTAAGAAAACGAGAAGA+AGG | + | chr3.1:40311120-40311139 | None:intergenic | 35.0% | |
| AGAATCTGTTTCAATGGCTT+TGG | - | chr3.1:40309403-40309422 | MS.gene064371:intron | 35.0% | |
| AGAGGGTAAGTAAAAGGTTA+TGG | + | chr3.1:40309052-40309071 | None:intergenic | 35.0% | |
| AGGGTAAGTAAAAGGTTATG+GGG | + | chr3.1:40309050-40309069 | None:intergenic | 35.0% | |
| AGTACCGCTACATTAAAGTT+TGG | + | chr3.1:40310109-40310128 | None:intergenic | 35.0% | |
| ATCCAGTAAATGTGATTGAG+AGG | + | chr3.1:40309070-40309089 | None:intergenic | 35.0% | |
| ATCTGATTTCCAAAAGCTTC+TGG | + | chr3.1:40311935-40311954 | None:intergenic | 35.0% | |
| CAATCCTATTAACAAACCTC+GGG | + | chr3.1:40313569-40313588 | None:intergenic | 35.0% | |
| CATGACTATGCCTACTAAAA+CGG | + | chr3.1:40311849-40311868 | None:intergenic | 35.0% | |
| CATTATAAAGAGTTGTGTCG+AGG | + | chr3.1:40312343-40312362 | None:intergenic | 35.0% | |
| CCAAATGAATTCCATAGCAA+TGG | + | chr3.1:40309678-40309697 | None:intergenic | 35.0% | |
| CCATTGCTATGGAATTCATT+TGG | - | chr3.1:40309675-40309694 | MS.gene064371:CDS | 35.0% | |
| CTAACAAAACCAAGGTGAAA+AGG | + | chr3.1:40312929-40312948 | None:intergenic | 35.0% | |
| CTCGACACAACTCTTTATAA+TGG | - | chr3.1:40312341-40312360 | MS.gene064371:intron | 35.0% | |
| GAAACAGATTCTCACTCAAA+CGG | + | chr3.1:40309395-40309414 | None:intergenic | 35.0% | |
| GAACATTGACAGGAAAAATG+TGG | + | chr3.1:40312735-40312754 | None:intergenic | 35.0% | |
| GAGATGACCTACATTTCATA+CGG | - | chr3.1:40312248-40312267 | MS.gene064371:intron | 35.0% | |
| GAGGGTAAGTAAAAGGTTAT+GGG | + | chr3.1:40309051-40309070 | None:intergenic | 35.0% | |
| GATTCTTGATTGTCTGTCTT+GGG | - | chr3.1:40312660-40312679 | MS.gene064371:intron | 35.0% | |
| GCAATCCTATTAACAAACCT+CGG | + | chr3.1:40313570-40313589 | None:intergenic | 35.0% | |
| GCCATCATTAATCAAACTCT+TGG | - | chr3.1:40313672-40313691 | MS.gene064371:intron | 35.0% | |
| GGATTGTTTAAACTTTGCTG+GGG | - | chr3.1:40313105-40313124 | MS.gene064371:intron | 35.0% | |
| GGGATTGTTTAAACTTTGCT+GGG | - | chr3.1:40313104-40313123 | MS.gene064371:intron | 35.0% | |
| GGGTAAATTTATGCTAACAC+AGG | - | chr3.1:40312680-40312699 | MS.gene064371:intron | 35.0% | |
| GGTTACCAAAACGAAGAAAT+AGG | + | chr3.1:40310263-40310282 | None:intergenic | 35.0% | |
| GTAACCCCAAATTCAACATA+AGG | + | chr3.1:40309445-40309464 | None:intergenic | 35.0% | |
| TAACAATAGGTCCAAGAGAA+AGG | - | chr3.1:40314187-40314206 | MS.gene064371:intron | 35.0% | |
| TACCAAAACGAAGAAATAGG+GGG | + | chr3.1:40310260-40310279 | None:intergenic | 35.0% | |
| TATCAAATCCAACTTAGTGG+AGG | + | chr3.1:40310553-40310572 | None:intergenic | 35.0% | |
| TCATGCATCAACCAAAAATG+TGG | + | chr3.1:40311529-40311548 | None:intergenic | 35.0% | |
| TCCAGTAAATGTGATTGAGA+GGG | + | chr3.1:40309069-40309088 | None:intergenic | 35.0% | |
| TCCTTACTCATTCTGATGTT+GGG | - | chr3.1:40312212-40312231 | MS.gene064371:intron | 35.0% | |
| TGAGTAGCAGCAAAATATTG+TGG | - | chr3.1:40309840-40309859 | MS.gene064371:CDS | 35.0% | |
| TGAGTGAGAATCTGTTTCAA+TGG | - | chr3.1:40309397-40309416 | MS.gene064371:intron | 35.0% | |
| TGATTCTTGATTGTCTGTCT+TGG | - | chr3.1:40312659-40312678 | MS.gene064371:intron | 35.0% | |
| TGATTGAGAGGGTAAGTAAA+AGG | + | chr3.1:40309058-40309077 | None:intergenic | 35.0% | |
| TGGGATTGTTTAAACTTTGC+TGG | - | chr3.1:40313103-40313122 | MS.gene064371:intron | 35.0% | |
| TGGTAACCTGTTGTTATACT+TGG | - | chr3.1:40310275-40310294 | MS.gene064371:intron | 35.0% | |
| TGTCTTGGTTTCTGTTTGTT+TGG | - | chr3.1:40309575-40309594 | MS.gene064371:intron | 35.0% | |
| TTAGACAAACTCATCTAACC+TGG | + | chr3.1:40310678-40310697 | None:intergenic | 35.0% | |
| TTATAGGATTGAGGTAAGCA+TGG | - | chr3.1:40311413-40311432 | MS.gene064371:intron | 35.0% | |
| TTCCTTACTCATTCTGATGT+TGG | - | chr3.1:40312211-40312230 | MS.gene064371:intron | 35.0% | |
| TTCGAGAGAAAAGTAGAAAG+AGG | - | chr3.1:40309344-40309363 | MS.gene064371:intron | 35.0% | |
| TTGGAACCAAGTATAACAAC+AGG | + | chr3.1:40310284-40310303 | None:intergenic | 35.0% | |
| TTTGTCGAATCTCTATGACT+TGG | - | chr3.1:40314106-40314125 | MS.gene064371:intron | 35.0% | |
| ! | AACTGATTCACAATGTTGGA+GGG | - | chr3.1:40314371-40314390 | MS.gene064371:CDS | 35.0% |
| ! | ATATGGATGAAGGATTTGCT+GGG | - | chr3.1:40311489-40311508 | MS.gene064371:intron | 35.0% |
| ! | ATGTTGAATTTGGGGTTACA+TGG | - | chr3.1:40309446-40309465 | MS.gene064371:intron | 35.0% |
| ! | ATTTGAAACTTGGCAGGAAA+GGG | + | chr3.1:40313652-40313671 | None:intergenic | 35.0% |
| ! | CAACAACTGATTCACAATGT+TGG | - | chr3.1:40314367-40314386 | MS.gene064371:CDS | 35.0% |
| ! | CTATAAGTTGAGGGCATATT+TGG | + | chr3.1:40309893-40309912 | None:intergenic | 35.0% |
| ! | GATCAATCATTGACTGCATA+TGG | - | chr3.1:40311472-40311491 | MS.gene064371:intron | 35.0% |
| ! | TATTTTATGTTGCCACTGTC+TGG | - | chr3.1:40313286-40313305 | MS.gene064371:intron | 35.0% |
| ! | TGAAAGTCCAACAACTTGTT+TGG | - | chr3.1:40312366-40312385 | MS.gene064371:intron | 35.0% |
| ! | TGTTGAATTTGGGGTTACAT+GGG | - | chr3.1:40309447-40309466 | MS.gene064371:intron | 35.0% |
| !! | ACTCTTGGTCTTGTTAAATC+AGG | - | chr3.1:40313687-40313706 | MS.gene064371:intron | 35.0% |
| !! | AGAAGCTTTTGGAAATCAGA+TGG | - | chr3.1:40311934-40311953 | MS.gene064371:intron | 35.0% |
| !! | AGGAGGTTTTGATCATCTAA+TGG | - | chr3.1:40314420-40314439 | MS.gene064371:CDS | 35.0% |
| !! | ATAACCCGAGGTTTGTTAAT+AGG | - | chr3.1:40313562-40313581 | MS.gene064371:CDS | 35.0% |
| !! | CTCTTGGTCTTGTTAAATCA+GGG | - | chr3.1:40313688-40313707 | MS.gene064371:intron | 35.0% |
| !! | GGGCATATTTGGAATTTTAC+AGG | + | chr3.1:40309882-40309901 | None:intergenic | 35.0% |
| !! | TCTTTCTACTTTTCTCTCGA+AGG | + | chr3.1:40309345-40309364 | None:intergenic | 35.0% |
| !!! | AATGTTTTGGGAAATGGTGT+TGG | - | chr3.1:40311322-40311341 | MS.gene064371:intron | 35.0% |
| !!! | TGCTGAAATGTTTTGGGAAA+TGG | - | chr3.1:40311316-40311335 | MS.gene064371:intron | 35.0% |
| !!! | TTTTTTGTTAATGCGCGGTT+AGG | - | chr3.1:40309104-40309123 | MS.gene064371:intron | 35.0% |
| AAAACCAAGGTGAAAAGGCA+CGG | + | chr3.1:40312924-40312943 | None:intergenic | 40.0% | |
| AAAATGCAAATCAACAGGGC+AGG | + | chr3.1:40309820-40309839 | None:intergenic | 40.0% | |
| AAAGTGGAGACTCCTAAGAT+GGG | + | chr3.1:40311781-40311800 | None:intergenic | 40.0% | |
| AAATGCAAATCAACAGGGCA+GGG | + | chr3.1:40309819-40309838 | None:intergenic | 40.0% | |
| AAGACATAAAGCAGACTGAG+GGG | + | chr3.1:40310495-40310514 | None:intergenic | 40.0% | |
| AAGAGGCAATTTCAGCAGAA+AGG | + | chr3.1:40313624-40313643 | None:intergenic | 40.0% | |
| ACAAGGATGCTATTCCTGAA+TGG | - | chr3.1:40311160-40311179 | MS.gene064371:intron | 40.0% | |
| ACATCTGATGTGTTGAGATG+CGG | + | chr3.1:40309027-40309046 | None:intergenic | 40.0% | |
| ACCCAACATCAGAATGAGTA+AGG | + | chr3.1:40312216-40312235 | None:intergenic | 40.0% | |
| ACCCTCTCAATCACATTTAC+TGG | - | chr3.1:40309065-40309084 | MS.gene064371:intron | 40.0% | |
| AGAGGCAATTTCAGCAGAAA+GGG | + | chr3.1:40313623-40313642 | None:intergenic | 40.0% | |
| AGGAACGGATACAAATACAG+AGG | + | chr3.1:40312108-40312127 | None:intergenic | 40.0% | |
| AGGAATAGCATCCTTGTATC+AGG | + | chr3.1:40311157-40311176 | None:intergenic | 40.0% | |
| ATACCTCATGCAGACTGATA+TGG | - | chr3.1:40311655-40311674 | MS.gene064371:intron | 40.0% | |
| ATCTTGTTGCAGAGATGGTT+TGG | - | chr3.1:40309143-40309162 | MS.gene064371:intron | 40.0% | |
| ATTGCAGAGAAAAAACCAGG+TGG | + | chr3.1:40313934-40313953 | None:intergenic | 40.0% | |
| CACAAGGAATACTTACACGA+AGG | + | chr3.1:40313775-40313794 | None:intergenic | 40.0% | |
| CATATGGATGAAGGATTTGC+TGG | - | chr3.1:40311488-40311507 | MS.gene064371:intron | 40.0% | |
| CCTTTCAGTTTCCAATAGCA+AGG | - | chr3.1:40310515-40310534 | MS.gene064371:intron | 40.0% | |
| CTGTCTTCCTGACATGTTAA+GGG | - | chr3.1:40313730-40313749 | MS.gene064371:intron | 40.0% | |
| GAAAAATGTGGCTAAGGAGA+CGG | + | chr3.1:40312723-40312742 | None:intergenic | 40.0% | |
| GAAGACATAAAGCAGACTGA+GGG | + | chr3.1:40310496-40310515 | None:intergenic | 40.0% | |
| GGAATAGCATCCTTGTATCA+GGG | + | chr3.1:40311156-40311175 | None:intergenic | 40.0% | |
| GTAAGCCTCAAGTACTCAAA+AGG | + | chr3.1:40312153-40312172 | None:intergenic | 40.0% | |
| GTTACAGGATATACTTTGCG+CGG | - | chr3.1:40310856-40310875 | MS.gene064371:intron | 40.0% | |
| TAACCTCAGTATCATCAACC+TGG | + | chr3.1:40312552-40312571 | None:intergenic | 40.0% | |
| TAAGTGCTTGTTCGTTTGTG+CGG | - | chr3.1:40312822-40312841 | MS.gene064371:intron | 40.0% | |
| TATAGCGGTATCGTGAGAAA+GGG | + | chr3.1:40310139-40310158 | None:intergenic | 40.0% | |
| TCTAGTTACGACCTTTCTCT+TGG | + | chr3.1:40314201-40314220 | None:intergenic | 40.0% | |
| TGACAGGAAAAATGTGGCTA+AGG | + | chr3.1:40312729-40312748 | None:intergenic | 40.0% | |
| TGAGCATGATAGTCTAACGA+AGG | - | chr3.1:40313344-40313363 | MS.gene064371:intron | 40.0% | |
| TTAATAGGGAAACCAGACAG+TGG | + | chr3.1:40313301-40313320 | None:intergenic | 40.0% | |
| TTACTCATTCTGATGTTGGG+TGG | - | chr3.1:40312215-40312234 | MS.gene064371:intron | 40.0% | |
| TTCACAATGTTGGAGGGAAT+CGG | - | chr3.1:40314377-40314396 | MS.gene064371:CDS | 40.0% | |
| ! | ACGATACCGCTATAGCATTT+TGG | - | chr3.1:40310145-40310164 | MS.gene064371:intron | 40.0% |
| ! | ACTGCTAAACCAGAAGCTTT+TGG | - | chr3.1:40311923-40311942 | MS.gene064371:intron | 40.0% |
| ! | AGTGCATTTTCAATGTCGTC+AGG | + | chr3.1:40308892-40308911 | None:intergenic | 40.0% |
| ! | ATACCGCTATAGCATTTTGG+AGG | - | chr3.1:40310148-40310167 | MS.gene064371:intron | 40.0% |
| ! | CAACTGATTCACAATGTTGG+AGG | - | chr3.1:40314370-40314389 | MS.gene064371:CDS | 40.0% |
| ! | CAATGGAGAAACCTTGCTAT+TGG | + | chr3.1:40310529-40310548 | None:intergenic | 40.0% |
| ! | CATTGACTGCATATGGATGA+AGG | - | chr3.1:40311479-40311498 | MS.gene064371:intron | 40.0% |
| ! | CATTTGAAACTTGGCAGGAA+AGG | + | chr3.1:40313653-40313672 | None:intergenic | 40.0% |
| ! | CTACTAGCTTCTCAATACCA+CGG | + | chr3.1:40312884-40312903 | None:intergenic | 40.0% |
| ! | GATGGTTTGGAACTTTGATC+TGG | - | chr3.1:40309156-40309175 | MS.gene064371:intron | 40.0% |
| ! | GTCTGAATTTTCTGTTCACC+AGG | - | chr3.1:40312531-40312550 | MS.gene064371:intron | 40.0% |
| ! | GTGCATTTTCAATGTCGTCA+GGG | + | chr3.1:40308891-40308910 | None:intergenic | 40.0% |
| ! | GTTTAAAGTCAATCTCACCG+TGG | - | chr3.1:40312864-40312883 | MS.gene064371:intron | 40.0% |
| ! | TACTTGAGGCTTACTAGTCT+TGG | - | chr3.1:40312159-40312178 | MS.gene064371:intron | 40.0% |
| ! | TCAAATATTCTGACGGGTGT+TGG | - | chr3.1:40311252-40311271 | MS.gene064371:intron | 40.0% |
| !! | CCTTGCTATTGGAAACTGAA+AGG | + | chr3.1:40310518-40310537 | None:intergenic | 40.0% |
| !! | CTTACTAGTCTTGGTGTCAT+CGG | - | chr3.1:40312168-40312187 | MS.gene064371:intron | 40.0% |
| !! | TATGGATGAAGGATTTGCTG+GGG | - | chr3.1:40311490-40311509 | MS.gene064371:intron | 40.0% |
| !! | TGGATTTGCTTGTTGTGTTC+AGG | + | chr3.1:40312128-40312147 | None:intergenic | 40.0% |
| !! | TTGCTTGTTGTGTTCAGGAA+CGG | + | chr3.1:40312123-40312142 | None:intergenic | 40.0% |
| AAACTCATCTAACCTGGAGC+AGG | + | chr3.1:40310672-40310691 | None:intergenic | 45.0% | |
| AACTCATCTAACCTGGAGCA+GGG | + | chr3.1:40310671-40310690 | None:intergenic | 45.0% | |
| AATTTCAGCAGAAAGGGAGG+AGG | + | chr3.1:40313617-40313636 | None:intergenic | 45.0% | |
| ACTAAAACGGCGCATCAGAT+GGG | + | chr3.1:40311836-40311855 | None:intergenic | 45.0% | |
| AGACCATATCAGTCTGCATG+AGG | + | chr3.1:40311661-40311680 | None:intergenic | 45.0% | |
| AGATGGGTAAGGTAATCGCA+AGG | + | chr3.1:40311765-40311784 | None:intergenic | 45.0% | |
| AGATTCGAATAACCCAGAGC+AGG | + | chr3.1:40311626-40311645 | None:intergenic | 45.0% | |
| AGGAGAAAGTTCGAGCAAAG+TGG | + | chr3.1:40311797-40311816 | None:intergenic | 45.0% | |
| AGGATTGAGGTAAGCATGGT+AGG | - | chr3.1:40311417-40311436 | MS.gene064371:intron | 45.0% | |
| AGGTAAGCATGGTAGGTACT+AGG | - | chr3.1:40311424-40311443 | MS.gene064371:intron | 45.0% | |
| ATAGCTGCTCCCAATCCAAA+GGG | - | chr3.1:40313066-40313085 | MS.gene064371:intron | 45.0% | |
| ATTGGGAGCAGCTATCCAAA+AGG | + | chr3.1:40313061-40313080 | None:intergenic | 45.0% | |
| ATTTCAGCAGAAAGGGAGGA+GGG | + | chr3.1:40313616-40313635 | None:intergenic | 45.0% | |
| CAAAGTGGAGACTCCTAAGA+TGG | + | chr3.1:40311782-40311801 | None:intergenic | 45.0% | |
| CAGATAGTAGAGCATAGCAG+TGG | + | chr3.1:40310175-40310194 | None:intergenic | 45.0% | |
| CATCTGATGTGTTGAGATGC+GGG | + | chr3.1:40309026-40309045 | None:intergenic | 45.0% | |
| CCCTCAACTTATAGATGCTC+CGG | - | chr3.1:40309899-40309918 | MS.gene064371:intron | 45.0% | |
| CCTCAAGTACTCAAAAGGTC+TGG | + | chr3.1:40312148-40312167 | None:intergenic | 45.0% | |
| CTATAGCGGTATCGTGAGAA+AGG | + | chr3.1:40310140-40310159 | None:intergenic | 45.0% | |
| GAAAACAAAGTGCGGTGAAG+AGG | - | chr3.1:40308985-40309004 | MS.gene064371:intron | 45.0% | |
| GATGGGTAAGGTAATCGCAA+GGG | + | chr3.1:40311764-40311783 | None:intergenic | 45.0% | |
| GATTTGATTGTGCTGGAGTG+AGG | + | chr3.1:40310630-40310649 | None:intergenic | 45.0% | |
| GCGATTACCTTACCCATCTT+AGG | - | chr3.1:40311766-40311785 | MS.gene064371:intron | 45.0% | |
| GCTGTCTTCCTGACATGTTA+AGG | - | chr3.1:40313729-40313748 | MS.gene064371:intron | 45.0% | |
| GGAAGACATAAAGCAGACTG+AGG | + | chr3.1:40310497-40310516 | None:intergenic | 45.0% | |
| GGACCTCCAAAATGCTATAG+CGG | + | chr3.1:40310154-40310173 | None:intergenic | 45.0% | |
| GGTAAGCATGGTAGGTACTA+GGG | - | chr3.1:40311425-40311444 | MS.gene064371:intron | 45.0% | |
| GTAGCATCCCTTAACATGTC+AGG | + | chr3.1:40313740-40313759 | None:intergenic | 45.0% | |
| TACTAAAACGGCGCATCAGA+TGG | + | chr3.1:40311837-40311856 | None:intergenic | 45.0% | |
| TACTATTGCAGCACTTCTGC+AGG | - | chr3.1:40309698-40309717 | MS.gene064371:CDS | 45.0% | |
| TAGCATCTCACCCTGATACA+AGG | - | chr3.1:40311143-40311162 | MS.gene064371:intron | 45.0% | |
| TCAAATTTGTCGGTCACGAC+AGG | + | chr3.1:40309251-40309270 | None:intergenic | 45.0% | |
| TCACAATGTTGGAGGGAATC+GGG | - | chr3.1:40314378-40314397 | MS.gene064371:CDS | 45.0% | |
| TCCAACTTAGTGGAGGACAA+TGG | + | chr3.1:40310546-40310565 | None:intergenic | 45.0% | |
| TCCATTGTCCTCCACTAAGT+TGG | - | chr3.1:40310542-40310561 | MS.gene064371:intron | 45.0% | |
| TCGAGTTCTTGGAAACATGG+TGG | - | chr3.1:40313470-40313489 | MS.gene064371:intron | 45.0% | |
| TGCTTCAACAGACGAGATGA+TGG | + | chr3.1:40313513-40313532 | None:intergenic | 45.0% | |
| TGGAGGGAGTAGTAATCACA+AGG | + | chr3.1:40313791-40313810 | None:intergenic | 45.0% | |
| TGGTCGAGTTCTTGGAAACA+TGG | - | chr3.1:40313467-40313486 | MS.gene064371:intron | 45.0% | |
| TTACAGGTGCTTCACTGTAG+AGG | + | chr3.1:40309866-40309885 | None:intergenic | 45.0% | |
| TTTGTTAGACGATGTGGGCT+TGG | - | chr3.1:40313407-40313426 | MS.gene064371:intron | 45.0% | |
| ! | ACCGGAGCATCTATAAGTTG+AGG | + | chr3.1:40309903-40309922 | None:intergenic | 45.0% |
| ! | CACACTCGATTTGATTGTGC+TGG | + | chr3.1:40310637-40310656 | None:intergenic | 45.0% |
| ! | CCGGAGCATCTATAAGTTGA+GGG | + | chr3.1:40309902-40309921 | None:intergenic | 45.0% |
| ! | CGTGGTATTGAGAAGCTAGT+AGG | - | chr3.1:40312882-40312901 | MS.gene064371:intron | 45.0% |
| ! | GATGGCATTTGAAACTTGGC+AGG | + | chr3.1:40313658-40313677 | None:intergenic | 45.0% |
| !! | ATCTGATGCGCCGTTTTAGT+AGG | - | chr3.1:40311836-40311855 | MS.gene064371:intron | 45.0% |
| !! | CCAGACCTTTTGAGTACTTG+AGG | - | chr3.1:40312145-40312164 | MS.gene064371:intron | 45.0% |
| !! | CTCCCCCTATTTCTTCGTTT+TGG | - | chr3.1:40310255-40310274 | MS.gene064371:intron | 45.0% |
| !! | GGTGTTGGCTTCTCTAGATT+TGG | - | chr3.1:40311337-40311356 | MS.gene064371:intron | 45.0% |
| !! | TCACCAGGTTGATGATACTG+AGG | - | chr3.1:40312546-40312565 | MS.gene064371:intron | 45.0% |
| AAGATCTCGCCCCATTGCTA+TGG | - | chr3.1:40309664-40309683 | MS.gene064371:intron | 50.0% | |
| ACCTGCATGCTTCGCAAGAT+AGG | - | chr3.1:40310904-40310923 | MS.gene064371:intron | 50.0% | |
| AGGACCCAACAACTAGGAAG+TGG | - | chr3.1:40314341-40314360 | MS.gene064371:CDS | 50.0% | |
| AGGTTGGGAGGAGACAAAAC+AGG | + | chr3.1:40310610-40310629 | None:intergenic | 50.0% | |
| ATGAGTTGTTCCGCAGCAGA+AGG | + | chr3.1:40308853-40308872 | None:intergenic | 50.0% | |
| CAGGATATACTTTGCGCGGT+AGG | - | chr3.1:40310860-40310879 | MS.gene064371:intron | 50.0% | |
| CTAAAACGGCGCATCAGATG+GGG | + | chr3.1:40311835-40311854 | None:intergenic | 50.0% | |
| GACGAATTCTCTCCTGCTCT+GGG | - | chr3.1:40311611-40311630 | MS.gene064371:intron | 50.0% | |
| GATAGCTGCTCCCAATCCAA+AGG | - | chr3.1:40313065-40313084 | MS.gene064371:intron | 50.0% | |
| GATTGTGCTGGAGTGAGGTT+GGG | + | chr3.1:40310625-40310644 | None:intergenic | 50.0% | |
| GCAGCCACTTCCTAGTTGTT+GGG | + | chr3.1:40314348-40314367 | None:intergenic | 50.0% | |
| GGAGACTCCTAAGATGGGTA+AGG | + | chr3.1:40311776-40311795 | None:intergenic | 50.0% | |
| GGCAATTTCAGCAGAAAGGG+AGG | + | chr3.1:40313620-40313639 | None:intergenic | 50.0% | |
| TATCTTGCGAAGCATGCAGG+TGG | + | chr3.1:40310905-40310924 | None:intergenic | 50.0% | |
| TCCTATCTTGCGAAGCATGC+AGG | + | chr3.1:40310908-40310927 | None:intergenic | 50.0% | |
| TGACGAATTCTCTCCTGCTC+TGG | - | chr3.1:40311610-40311629 | MS.gene064371:intron | 50.0% | |
| TGATTGTGCTGGAGTGAGGT+TGG | + | chr3.1:40310626-40310645 | None:intergenic | 50.0% | |
| TGCAGCCACTTCCTAGTTGT+TGG | + | chr3.1:40314349-40314368 | None:intergenic | 50.0% | |
| TGTCATCGGTGCACTAGTGA+AGG | - | chr3.1:40312182-40312201 | MS.gene064371:intron | 50.0% | |
| TGTGTGTGTGTGTGTGTGTG+TGG | - | chr3.1:40310830-40310849 | MS.gene064371:intron | 50.0% | |
| TTCAGGAGGACCCAACAACT+AGG | - | chr3.1:40314335-40314354 | MS.gene064371:CDS | 50.0% | |
| TTCGCTGTTGGTCGAGTTCT+TGG | - | chr3.1:40313459-40313478 | MS.gene064371:intron | 50.0% | |
| TTCGTCTGTCAGATAACCCG+AGG | - | chr3.1:40313550-40313569 | MS.gene064371:CDS | 50.0% | |
| TTTCAGCAGAAAGGGAGGAG+GGG | + | chr3.1:40313615-40313634 | None:intergenic | 50.0% | |
| ! | GGGGAGTGAGCTCTCTAAAA+CGG | - | chr3.1:40312627-40312646 | MS.gene064371:CDS | 50.0% |
| ! | GTGTGTGTGTGGACTGTTAC+AGG | - | chr3.1:40310841-40310860 | MS.gene064371:intron | 50.0% |
| !! | AGAAGGCATCGTGCCATCTT+TGG | + | chr3.1:40308836-40308855 | None:intergenic | 50.0% |
| !! | AGTGCGGTGAAGAGGTATTG+CGG | - | chr3.1:40308993-40309012 | MS.gene064371:intron | 50.0% |
| AACAGGGCAGGGTTTCGCAT+AGG | + | chr3.1:40309808-40309827 | None:intergenic | 55.0% | |
| AACGAAGGCTCTGCTGCAAC+AGG | - | chr3.1:40313359-40313378 | MS.gene064371:intron | 55.0% | |
| AATCGGGTTCCTGCACTGCA+AGG | - | chr3.1:40314394-40314413 | MS.gene064371:CDS | 55.0% | |
| ACAGGGCAGGGTTTCGCATA+GGG | + | chr3.1:40309807-40309826 | None:intergenic | 55.0% | |
| TGCACTTCGTGAGCTCTGCA+AGG | - | chr3.1:40308906-40308925 | MS.gene064371:intron | 55.0% | |
| TGCCTGCGCACTATGGAGAT+GGG | - | chr3.1:40312607-40312626 | MS.gene064371:CDS | 55.0% | |
| ! | AGGCATCGTGCCATCTTTGG+CGG | + | chr3.1:40308833-40308852 | None:intergenic | 55.0% |
| ! | CCAACCGTGCCTTTTCACCT+TGG | - | chr3.1:40312917-40312936 | MS.gene064371:intron | 55.0% |
| ! | CCAAGGTGAAAAGGCACGGT+TGG | + | chr3.1:40312920-40312939 | None:intergenic | 55.0% |
| ! | GGCAGGAAAGGGCATGAAAG+AGG | + | chr3.1:40313641-40313660 | None:intergenic | 55.0% |
| !! | GGATGAAGGATTTGCTGGGG+TGG | - | chr3.1:40311493-40311512 | MS.gene064371:intron | 55.0% |
| !! | GTGCGGTGAAGAGGTATTGC+GGG | - | chr3.1:40308994-40309013 | MS.gene064371:intron | 55.0% |
| !!! | GCTGAGCGCTTTTTCGCTGT+TGG | - | chr3.1:40313447-40313466 | MS.gene064371:intron | 55.0% |
| AGAAAGGGAGGAGGGGAAGG+AGG | + | chr3.1:40313608-40313627 | None:intergenic | 60.0% | |
| AGCAGAAAGGGAGGAGGGGA+AGG | + | chr3.1:40313611-40313630 | None:intergenic | 60.0% | |
| CAATGCTCTTGCCCTGCTCC+AGG | - | chr3.1:40310657-40310676 | MS.gene064371:CDS | 60.0% | |
| CAGGGCAGGGTTTCGCATAG+GGG | + | chr3.1:40309806-40309825 | None:intergenic | 60.0% | |
| CTCCATAGTGCGCAGGCACA+GGG | + | chr3.1:40312605-40312624 | None:intergenic | 60.0% | |
| GCAGTGGCACCCTGAGTAGT+CGG | + | chr3.1:40308796-40308815 | None:intergenic | 60.0% | |
| GCCTGCGCACTATGGAGATG+GGG | - | chr3.1:40312608-40312627 | MS.gene064371:CDS | 60.0% | |
| GGTTCAGCTGCCGCCAAAGA+TGG | - | chr3.1:40308820-40308839 | MS.gene064371:CDS | 60.0% | |
| GTGCCTGCGCACTATGGAGA+TGG | - | chr3.1:40312606-40312625 | MS.gene064371:CDS | 60.0% | |
| GTTCCTGCACTGCAAGGTGG+AGG | - | chr3.1:40314400-40314419 | MS.gene064371:CDS | 60.0% | |
| TCCATAGTGCGCAGGCACAG+GGG | + | chr3.1:40312604-40312623 | None:intergenic | 60.0% | |
| TCCCCATCTCCATAGTGCGC+AGG | + | chr3.1:40312612-40312631 | None:intergenic | 60.0% | |
| TCTCCATAGTGCGCAGGCAC+AGG | + | chr3.1:40312606-40312625 | None:intergenic | 60.0% | |
| TGGCACGATGCCTTCTGCTG+CGG | - | chr3.1:40308840-40308859 | MS.gene064371:CDS | 60.0% | |
| TGTGCTGGAGTGAGGTTGGG+AGG | + | chr3.1:40310622-40310641 | None:intergenic | 60.0% | |
| TTTGGCGGCAGCTGAACCCT+GGG | + | chr3.1:40308818-40308837 | None:intergenic | 60.0% | |
| CCTCCTCCACCTTGCAGTGC+AGG | + | chr3.1:40314406-40314425 | None:intergenic | 65.0% | |
| CCTGCACTGCAAGGTGGAGG+AGG | - | chr3.1:40314403-40314422 | MS.gene064371:CDS | 65.0% | |
| CGGGTTCCTGCACTGCAAGG+TGG | - | chr3.1:40314397-40314416 | MS.gene064371:CDS | 65.0% | |
| CTTTGGCGGCAGCTGAACCC+TGG | + | chr3.1:40308819-40308838 | None:intergenic | 65.0% | |
| TCCCCTGTGCCTGCGCACTA+TGG | - | chr3.1:40312600-40312619 | MS.gene064371:CDS | 65.0% | |
| !! | ACTCAGGGTGCCACTGCCCA+GGG | - | chr3.1:40308799-40308818 | MS.gene064371:CDS | 65.0% |
| !! | TACTCAGGGTGCCACTGCCC+AGG | - | chr3.1:40308798-40308817 | MS.gene064371:CDS | 65.0% |
| GGCAGCTGAACCCTGGGCAG+TGG | + | chr3.1:40308812-40308831 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 40308790 | 40314450 | 40308790 | ID=MS.gene064371 |
| chr3.1 | mRNA | 40308790 | 40314450 | 40308790 | ID=MS.gene064371.t1;Parent=MS.gene064371 |
| chr3.1 | exon | 40314313 | 40314450 | 40314313 | ID=MS.gene064371.t1.exon1;Parent=MS.gene064371.t1 |
| chr3.1 | CDS | 40314313 | 40314450 | 40314313 | ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1 |
| chr3.1 | exon | 40313521 | 40313592 | 40313521 | ID=MS.gene064371.t1.exon2;Parent=MS.gene064371.t1 |
| chr3.1 | CDS | 40313521 | 40313592 | 40313521 | ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1 |
| chr3.1 | exon | 40312562 | 40312651 | 40312562 | ID=MS.gene064371.t1.exon3;Parent=MS.gene064371.t1 |
| chr3.1 | CDS | 40312562 | 40312651 | 40312562 | ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1 |
| chr3.1 | exon | 40312059 | 40312101 | 40312059 | ID=MS.gene064371.t1.exon4;Parent=MS.gene064371.t1 |
| chr3.1 | CDS | 40312059 | 40312101 | 40312059 | ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1 |
| chr3.1 | exon | 40311037 | 40311143 | 40311037 | ID=MS.gene064371.t1.exon5;Parent=MS.gene064371.t1 |
| chr3.1 | CDS | 40311037 | 40311143 | 40311037 | ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1 |
| chr3.1 | exon | 40310592 | 40310687 | 40310592 | ID=MS.gene064371.t1.exon6;Parent=MS.gene064371.t1 |
| chr3.1 | CDS | 40310592 | 40310687 | 40310592 | ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1 |
| chr3.1 | exon | 40309669 | 40309859 | 40309669 | ID=MS.gene064371.t1.exon7;Parent=MS.gene064371.t1 |
| chr3.1 | CDS | 40309669 | 40309859 | 40309669 | ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1 |
| chr3.1 | exon | 40309462 | 40309531 | 40309462 | ID=MS.gene064371.t1.exon8;Parent=MS.gene064371.t1 |
| chr3.1 | CDS | 40309462 | 40309531 | 40309462 | ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1 |
| chr3.1 | exon | 40308790 | 40308900 | 40308790 | ID=MS.gene064371.t1.exon9;Parent=MS.gene064371.t1 |
| chr3.1 | CDS | 40308790 | 40308900 | 40308790 | ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1 |
| Gene Sequence |
| Protein sequence |
