AlfalfaGEDB | MS.gene064371

M. sativa cultivar XinJiangDaYe / MS.gene064371

KEGG: K12606
GO: -
PFAM: PF04078.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064371.t1	XP_020230547.1	91.4	304	25	1	2	305	21	323	9.70E-152	546.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064371.t1	Q6IP65	69.6	270	82	0	26	295	24	293	4.9e-104	379.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064371.t1	A0A151SBL7	91.4	304	25	1	2	305	21	323	7.0e-152	546.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene064371.t1	TR	Rcd1-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064371.t1	MTR_3g053170	96.441	281	10	0	25	305	26	306	0.0	558
MS.gene064371.t1	MTR_8g106940	59.060	298	119	1	6	303	22	316	5.87e-119	345
MS.gene064371.t1	MTR_6g065170	60.274	292	113	1	6	297	22	310	1.68e-116	338
MS.gene064371.t1	MTR_5g093460	59.559	272	109	1	25	296	167	437	1.14e-106	318
MS.gene064371.t1	MTR_5g093460	60.902	133	51	1	22	154	2	133	5.69e-46	161
MS.gene064371.t1	MTR_3g018640	56.272	279	115	1	17	288	23	301	1.18e-101	300
MS.gene064371.t1	MTR_1g056470	65.611	221	76	0	24	244	33	253	1.29e-100	296
MS.gene064371.t1	MTR_1g043540	56.000	125	54	1	129	253	9	132	4.14e-37	129
MS.gene064371.t1	MTR_1g043500	49.206	63	31	1	183	244	3	65	2.41e-13	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064371.t1	AT3G20800	82.450	302	51	2	2	303	17	316	0.0	506
MS.gene064371.t1	AT5G12980	78.596	285	55	2	22	305	32	311	2.47e-163	457
MS.gene064371.t1	AT2G32550	34.432	273	163	5	26	285	51	320	2.88e-44	154
MS.gene064371.t1	AT2G32550	35.060	251	149	4	46	285	34	281	3.41e-42	147
MS.gene064371.t1	AT2G32550	34.934	229	135	4	68	285	1	226	3.70e-37	132

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Find 75 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCATCTAACCTGGAGC+AGG	0.510559	3.1:+40312549	None:intergenic
AAATGAATTCCATAGCAATG+GGG	0.758849	3.1:+40313545	None:intergenic
AACTCATCTAACCTGGAGCA+GGG	0.624665	3.1:+40312550	None:intergenic
AACTGATTCACAATGTTGGA+GGG	0.575243	3.1:-40308847	MS.gene064371:CDS
AAGATCTCGCCCCATTGCTA+TGG	0.486631	3.1:-40313554	MS.gene064371:CDS
AAGTGACATGCCGACTACTC+AGG	0.479507	3.1:-40314435	None:intergenic
AATCGGGTTCCTGCACTGCA+AGG	0.603945	3.1:-40308824	MS.gene064371:CDS
ACAAGGATGCTATTCCTGAA+TGG	0.556336	3.1:-40312058	MS.gene064371:intron
ACTCAGGGTGCCACTGCCCA+GGG	0.541700	3.1:-40314419	MS.gene064371:CDS
AGAAAGTAACATTACCATTC+AGG	0.363182	3.1:+40312044	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAATTCCATAGCAATG+GGG	+	chr3.1:40309676-40309695	None:intergenic	30.0%
AAGTGACAAATAGAATCAGA+GGG	-	chr3.1:40314041-40314060	MS.gene064371:intron	30.0%
AATGATTGATCACATCAACT+TGG	+	chr3.1:40311463-40311482	None:intergenic	30.0%
AATGTAACCGTATGAAATGT+AGG	+	chr3.1:40312258-40312277	None:intergenic	30.0%
AATGTTAATCGAACATTGAC+AGG	+	chr3.1:40312745-40312764	None:intergenic	30.0%
AATTCAAAAGCAACAAGGAA+AGG	+	chr3.1:40311872-40311891	None:intergenic	30.0%
AATTCATCCAAACAAGTTGT+TGG	+	chr3.1:40312376-40312395	None:intergenic	30.0%
ACAGCAAAAAAAAAGAATGG+AGG	+	chr3.1:40313808-40313827	None:intergenic	30.0%
ACCAAGAGTTTGATTAATGA+TGG	+	chr3.1:40313676-40313695	None:intergenic	30.0%
ACTCAAAAATGCAAATCAAC+AGG	+	chr3.1:40309825-40309844	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	40308790	40314450	40308790	ID=MS.gene064371
chr3.1	mRNA	40308790	40314450	40308790	ID=MS.gene064371.t1;Parent=MS.gene064371
chr3.1	exon	40314313	40314450	40314313	ID=MS.gene064371.t1.exon1;Parent=MS.gene064371.t1
chr3.1	CDS	40314313	40314450	40314313	ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1
chr3.1	exon	40313521	40313592	40313521	ID=MS.gene064371.t1.exon2;Parent=MS.gene064371.t1
chr3.1	CDS	40313521	40313592	40313521	ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1
chr3.1	exon	40312562	40312651	40312562	ID=MS.gene064371.t1.exon3;Parent=MS.gene064371.t1
chr3.1	CDS	40312562	40312651	40312562	ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1
chr3.1	exon	40312059	40312101	40312059	ID=MS.gene064371.t1.exon4;Parent=MS.gene064371.t1
chr3.1	CDS	40312059	40312101	40312059	ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1
chr3.1	exon	40311037	40311143	40311037	ID=MS.gene064371.t1.exon5;Parent=MS.gene064371.t1
chr3.1	CDS	40311037	40311143	40311037	ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1
chr3.1	exon	40310592	40310687	40310592	ID=MS.gene064371.t1.exon6;Parent=MS.gene064371.t1
chr3.1	CDS	40310592	40310687	40310592	ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1
chr3.1	exon	40309669	40309859	40309669	ID=MS.gene064371.t1.exon7;Parent=MS.gene064371.t1
chr3.1	CDS	40309669	40309859	40309669	ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1
chr3.1	exon	40309462	40309531	40309462	ID=MS.gene064371.t1.exon8;Parent=MS.gene064371.t1
chr3.1	CDS	40309462	40309531	40309462	ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1
chr3.1	exon	40308790	40308900	40308790	ID=MS.gene064371.t1.exon9;Parent=MS.gene064371.t1
chr3.1	CDS	40308790	40308900	40308790	ID=cds.MS.gene064371.t1;Parent=MS.gene064371.t1

Gene Sequence

>MS.gene064371

ATGCCGACTACTCAGGGTGCCACTGCCCAGGGTTCAGCTGCCGCCAAAGATGGCACGATGCCTTCTGCTGCGGAACAACTCATTTGTAAACTTACAAACCCTGACGACATTGAAAATGCACTTCGTGAGCTCTGCAAGGTTACCGTTTCCCCTTTATTTTAGAATACCAGATTAGAGTTTCAACAAATTTGGATTGAAAACAAAGTGCGGTGAAGAGGTATTGCGGGTTCGAACCCGCATCTCAACACATCAGATGTCCCCATAACCTTTTACTTACCCTCTCAATCACATTTACTGGATTGTATTTACTTTTTTTTTTTGTTAATGCGCGGTTAGGTTTTCATTTAATTAATATCTTGTTGCAGAGATGGTTTGGAACTTTGATCTGGCCTTCAAATGTTAGTTAATTTTGAAGATATGATATTGATATTATGTTTATGTGTTCTTGTTATGAGTTTCCTGTCGTGACCGACAAATTTGACTTTTTTAATGTTTTTCTGTTTTGCGTGTTTTTCGAATCTCTGTTTTCCTTGTTTGTTGTTACAGTTTTTACCTTCGAGAGAAAAGTAGAAAGAGGTATGATCAATTTTGCATGAGTATTCCCGTTTGAGTGAGAATCTGTTTCAATGGCTTTGGTTTGTGCATTATTTCTCCTTATGTTGAATTTGGGGTTACATGGGAGATGTAATCATTATTTGTTAATGGATTGATGCTGATTAACTAATTAAATTTTAGATTTGTGCTAAAAATTGTTTAGACATTTATTGAATTATATCACGATGATTTGTCTTGGTTTCTGTTTGTTTGGATTGCTGCTGCACTCATTTGAGTATCTCATTTTTGTTTTATGTATTGTAGAAGAGGGAGCAATTTCAAGATCTCGCCCCATTGCTATGGAATTCATTTGGTACTATTGCAGCACTTCTGCAGGTATGCTGTGTTACTTTTTTCCTATCTCTATTGTTGAGCTTATTTTGCTATAACCTTTCATATTAATCTGTAGTCAATAGAAGCCCCTATGCGAAACCCTGCCCTGTTGATTTGCATTTTTGAGTAGCAGCAAAATATTGTGGCCTCTACAGTGAAGCACCTGTAAAATTCCAAATATGCCCTCAACTTATAGATGCTCCGGTGTTCCCTTTTGTTTCTTTTGAAACTTTTTGGTCATTTCATCCTAAAACTATGCTTTATGTTGGGTTTGAATATTGGTAACACTGAACTTTGATTATTAGTTTTGAATGTGTAAGATACTATGGTATAGATTTCTGAGCTTTTATGTGTATCATACTATGGTATAAATTTCTTGTATTGTTTTTCCAAACTTTAATGTAGCGGTACTGATGATACCCTTTCTCACGATACCGCTATAGCATTTTGGAGGTCCACTGCTATGCTCTACTATCTGTCATTGACAACATAATTATACTTAGTTTTGAATATATTGTGGCATTCACATTTTTCTCTTCTCCCCCTATTTCTTCGTTTTGGTAACCTGTTGTTATACTTGGTTCCAACTATTTTTCCATGATTAGACCAACTTTGAAATTTGATAATTAGTCAAAACTACGCGATGTTGTGATTTAACTTCGATCTTTTCAAAACTGTGCATCTAAAAATTGGTTAGCTTTAAAATGCTATAGTATCAGCATACTCTGTAAACTGTACTCAGTTTCTCCACATTTATTTTAGTTTAATATTTTATCCCCTCAGTCTGCTTTATGTCTTCCTTTCAGTTTCCAATAGCAAGGTTTCTCCATTGTCCTCCACTAAGTTGGATTTGATATTTTATTTTCTTTCAGGAAATTGTTTCAATATATCCTGTTTTGTCTCCTCCCAACCTCACTCCAGCACAATCAAATCGAGTGTGCAATGCTCTTGCCCTGCTCCAGGTTAGATGAGTTTGTCTAACTCAATTCTTTTATTTGTTTGTGAATAACTTGATTATGTGAATACTCATTTTAAATCACCAAACATTGAAATTTGGACATCTATATCACGCTTTTAGTAAAAATATTTTAGCAAAATTTCAAGGTGGGATAGTGTGTGTGTGTGTGTGTGTGTGGACTGTTACAGGATATACTTTGCGCGGTAGGTTATTTGTATCTGACAATTCCACCTGCATGCTTCGCAAGATAGGAGAAAAGAAAAGAAGACACTTATGTGCAGTGTTTCTTCAGTTTCTTAAATCTTAAGTTCAGATAATCAATTGATTAGGAAAAGAACCAGCCATAGATATTATACTTTTTTCTTTTTTTTTTTTTTTGTTATTTTCTTGAGACATATCATTAAGAACATAAAAAAAAATGACGGCACTAAGTTTTTTTTTTCCTTCTTCTCGTTTTCTTACAGTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTGAATGGTAATGTTACTTTCTTCGTTCATTCGATGAACTTTGAACTTCTGTCTGATTTTTAATTATCATCTATGCTTCAAATATTCTGACGGGTGTTGGACTGATGTGTTCTTAAAAATCAAAGTTGGCATTTTGTATTTTGCTGAAATGTTTTGGGAAATGGTGTTGGCTTCTCTAGATTTGGTCGATGCCATTTCCATCTAAGTAATACAGTAATAGGAAATAGTGCTATGGAAATTATAGGATTGAGGTAAGCATGGTAGGTACTAGGGACTTGATATACACCAAGTTGATGTGATCAATCATTGACTGCATATGGATGAAGGATTTGCTGGGGTGGTTTGAATTGTCCACATTTTTGGTTGATGCATGAATGATCGATGTTACCCTTTTAACTTGATCATTCTTTTTGATATATTTACTGCATGAACAAATGACGAATTCTCTCCTGCTCTGGGTTATTCGAATCTCTATTTGACATACCTCATGCAGACTGATATGGTCTGCTTAATGTCATCCATCTAACAAATTGCTTTTCTGAGTAAAAATGAATGTTGCTAATAAACTTTAAATTCAACTCGCATGCCCTTGCGATTACCTTACCCATCTTAGGAGTCTCCACTTTGCTCGAACTTTCTCCTATTATTTAAAGGTTACCCCATCTGATGCGCCGTTTTAGTAGGCATAGTCATGCCTTTCCTTGTTGCTTTTGAATTTTTTTACTTCTAATATCTATACACTTGTAAAACTGCTAAACCAGAAGCTTTTGGAAATCAGATGGTGTAATACCTTTTCTTTTTATATTGAATATAAGGAAACTGCTTGAATGTCAAAAGATCCATTGGTTTTTATTAGTTAAAGATAGTTCATAAGGTATGTTGTATTCTTTTAACGATTCTTTTCACTTGCTTTTTTCTTCAGCGCACGTTCCTCTGTATTTGTATCCGTTCCTGAACACAACAAGCAAATCCAGACCTTTTGAGTACTTGAGGCTTACTAGTCTTGGTGTCATCGGTGCACTAGTGAAGGTACTTCTTCCTTACTCATTCTGATGTTGGGTGGAAATAACTGTGAGATGACCTACATTTCATACGGTTACATTTTTACTGCAAAAATTAATTTGAAATAATAACAAAAAATTGTCCGAAAGATTCATCACAAAATCCTCGACACAACTCTTTATAATGGAATGAAAGTCCAACAACTTGTTTGGATGAATTCGTAAACTAGTGTTCCTCTATATTTTGTTTTATATTATTATTATTATTATTGTTATTATTATTATTATTATTATTATTATCATCATCATCATCATTATTATTATTATATCATCTATGTTAGTGTTTTTCAATTTAGTCTGAATTTTCTGTTCACCAGGTTGATGATACTGAGGTTATTAGTTTTCTGCTTTCGACTGAAATAATTCCCCTGTGCCTGCGCACTATGGAGATGGGGAGTGAGCTCTCTAAAACGGTGAGTGTACTGATTCTTGATTGTCTGTCTTGGGTAAATTTATGCTAACACAGGCAAATCAGACTTTATTACCGTCTCCTTAGCCACATTTTTCCTGTCAATGTTCGATTAACATTAATATATGCATGTGAAGTTATTTTCGTATTTCAATGCTGTGTTAGACATACGTATAATAAGTGCTTGTTCGTTTGTGCGGTGAGTGACCGCTACTACATGTTTAAAGTCAATCTCACCGTGGTATTGAGAAGCTAGTAGGTGTAGCTTTACGCCAACCGTGCCTTTTCACCTTGGTTTTGTTAGTTTCCAAACACATGCTAAATCAGTTTATGCATTCATACGTCATAGCACAAGATAAATAGATACTGTGAACTTATCACTTAAGAAGACTGCTTTTGATATTCTTGTTTTACCTTTTGGATAGCTGCTCCCAATCCAAAGGGTTTAGCTATGGTCATGGGATTGTTTAAACTTTGCTGGGGATGTTTAATGTTGTTATCAATATGTTATTTGAGTAATGGCATTTGTATGGGTTCAACTTTAAATACTATTTTGTCATTAGGATAAATTATTGAATACAATTTTTGGTCATTAGGATAAACTCTCGATCTTTTATTGTATAGATTTTAAGGCACCAGTTTATTTTATGTTGCCACTGTCTGGTTTCCCTATTAATGTATATGAGATAATAATAAAATTGAGCATGATAGTCTAACGAAGGCTCTGCTGCAACAGGTTGCAACATTTATTGTTCAAAAGATTTTGTTAGACGATGTGGGCTTGGACTATATTTGTACTACAGCTGAGCGCTTTTTCGCTGTTGGTCGAGTTCTTGGAAACATGGTGGCAGCTCTTGCTGAGCAACCATCATCTCGTCTGTTGAAGCATATCATTCGATGCTATCTTCGTCTGTCAGATAACCCGAGGTTTGTTAATAGGATTGCAACTTAATGCGAGTTCCTCCTTCCCCTCCTCCCTTTCTGCTGAAATTGCCTCTTTCATGCCCTTTCCTGCCAAGTTTCAAATGCCATCATTAATCAAACTCTTGGTCTTGTTAAATCAGGGCTTGTGATGCATTAAGAAGCTGTCTTCCTGACATGTTAAGGGATGCTACATTCAGCAGCTGCCTTCGTGTAAGTATTCCTTGTGATTACTACTCCCTCCATTCTTTTTTTTTGCTGTGATTTTACGATTATTTATACATACCAAGAAAACTAATAAATTGTTACTTTTGATTGAATATTTTGTTTTTGCCTACAATATCTAAACTATTTATTATCTAATTCCACCTGGTTTTTTCTCTGCAATAAACACTTAAGAGTATTATTGACAAAACAAAATTAATGTTTGAACTTTGAAAATGACAAGTAAATAAGAACAATTCTTTTCCTACATAAGTGACAAATAGAATCAGAGGGAGTAATTTTTAATCAATTAGGCCTCGACATCCAATGTAAAATTTTGTCGAATCTCTATGACTTGGACCAAATATGCAATAGTCTGTTTTTCGTTGAGTAAAATGGCATGAGTGAAGAAATCATTAACAATAGGTCCAAGAGAAAGGTCGTAACTAGAACAATTCATCTTGTTCTCCAAATCTTTAATGTTAGAGCTGAAAATTTTCCATTCAGTCACTTTGAAAAAAAATTCATGCAGTTTGTTTACAATACTTATTTTTGGTTTTGTTTATTCAGGAGGACCCAACAACTAGGAAGTGGCTGCAACAACTGATTCACAATGTTGGAGGGAATCGGGTTCCTGCACTGCAAGGTGGAGGAGGTTTTGATCATCTAATGGTGAATTGA

Protein sequence

>MS.gene064371.t1

MPTTQGATAQGSAAAKDGTMPSAAEQLICKLTNPDDIENALRELCKKREQFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHVPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRKWLQQLIHNVGGNRVPALQGGGGFDHLMVN