Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064393.t1 | RHN67153.1 | 86.5 | 893 | 114 | 5 | 1 | 892 | 1 | 887 | 0.00E+00 | 1341.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064393.t1 | Q9LTS7 | 23.9 | 284 | 176 | 6 | 498 | 752 | 336 | 608 | 2.7e-09 | 65.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064393.t1 | A0A396IRN9 | 86.5 | 893 | 114 | 5 | 1 | 892 | 1 | 887 | 0.0e+00 | 1341.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064393.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064393.t1 | MTR_5g096500 | 89.238 | 892 | 82 | 5 | 1 | 892 | 1 | 878 | 0.0 | 1530 |
| MS.gene064393.t1 | MTR_5g096500 | 89.126 | 892 | 82 | 6 | 1 | 892 | 1 | 877 | 0.0 | 1524 |
| MS.gene064393.t1 | MTR_3g053340 | 79.866 | 894 | 107 | 9 | 1 | 892 | 1 | 823 | 0.0 | 1365 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064393.t1 | AT5G56930 | 36.328 | 256 | 129 | 9 | 498 | 727 | 336 | 583 | 7.86e-37 | 148 |
Find 203 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCATCTAATCTCTTTA+TGG | 0.121630 | 3.3:-43921122 | MS.gene064393:CDS |
| TTAGAAGAGGGAGAAATTTC+TGG | 0.169773 | 3.3:-43921292 | MS.gene064393:CDS |
| ATTACTGGATTCTACAATTA+TGG | 0.231119 | 3.3:-43921413 | MS.gene064393:CDS |
| AATACCATGGACTTTGTTAA+AGG | 0.249136 | 3.3:+43918445 | None:intergenic |
| TTGCCTCAGTCAGTCAATTT+TGG | 0.252130 | 3.3:-43917049 | MS.gene064393:CDS |
| TATTCTGTTTCTCGCAGTTC+AGG | 0.265437 | 3.3:+43921830 | None:intergenic |
| TTCAGTTTCACTGCTGAATA+AGG | 0.267921 | 3.3:-43917014 | MS.gene064393:CDS |
| AGTTTCAGAACATATGAAAT+TGG | 0.281390 | 3.3:-43921218 | MS.gene064393:CDS |
| GGAGCCTTTAGACACAAAAT+TGG | 0.289293 | 3.3:+43917868 | None:intergenic |
| TCTTCAGAAGGTCTGGTATC+TGG | 0.304297 | 3.3:-43916731 | MS.gene064393:CDS |
| ATTTATAAATCTAATTCCTT+TGG | 0.310961 | 3.3:+43917300 | None:intergenic |
| AGAATAAATTCTCTTAGAAT+TGG | 0.311344 | 3.3:+43917381 | None:intergenic |
| TGTATTTCCTTCAAGGGTAT+TGG | 0.313994 | 3.3:+43922066 | None:intergenic |
| GACAGAAGATGGTGGATTAC+TGG | 0.316523 | 3.3:-43921428 | MS.gene064393:CDS |
| AAACCATCTGTTTGTGTAGA+TGG | 0.328437 | 3.3:+43921937 | None:intergenic |
| CGGTAGTGAAGTTGATTTGA+TGG | 0.337687 | 3.3:-43921806 | MS.gene064393:CDS |
| ACAGAGATCTAGGTGTTAAA+AGG | 0.338944 | 3.3:-43919636 | MS.gene064393:CDS |
| TGATGCAGCAGAATTTCTTA+TGG | 0.341614 | 3.3:-43921971 | MS.gene064393:CDS |
| TTTACCATAAAGAGATTAGA+TGG | 0.345594 | 3.3:+43921118 | None:intergenic |
| TGGACAAGATTTCCCTTGTT+TGG | 0.347517 | 3.3:+43917232 | None:intergenic |
| TTTATAAATCTAATTCCTTT+GGG | 0.352802 | 3.3:+43917301 | None:intergenic |
| GGTTGTACCGTGTCTTGTTT+TGG | 0.353400 | 3.3:+43917253 | None:intergenic |
| CTTCAAGGGTATTGGACCCT+TGG | 0.362987 | 3.3:+43922074 | None:intergenic |
| TCATTTGGAACAGATGATAA+TGG | 0.364717 | 3.3:-43921914 | MS.gene064393:CDS |
| ATCGGTTCAAGAGGTAAATA+AGG | 0.366054 | 3.3:-43916825 | MS.gene064393:CDS |
| TGTTCTGGAGGCTGAAACCT+GGG | 0.366097 | 3.3:+43919613 | None:intergenic |
| TTGAAGAGATCATGATCATA+TGG | 0.366562 | 3.3:+43917902 | None:intergenic |
| GTTGTAGAGGTGAACGTTGT+AGG | 0.367146 | 3.3:-43917844 | MS.gene064393:CDS |
| TTCAAGGGTATTGGACCCTT+GGG | 0.374920 | 3.3:+43922075 | None:intergenic |
| AAGGAGATACCCGTATTAAA+AGG | 0.376901 | 3.3:+43921151 | None:intergenic |
| GGAGTCAACTTTCTTTCTTT+CGG | 0.379336 | 3.3:-43917136 | MS.gene064393:CDS |
| ATTTCACCCTCTTGAATAGT+AGG | 0.380109 | 3.3:+43921538 | None:intergenic |
| TCTGGTTTGCAAGCATTTGT+AGG | 0.381821 | 3.3:+43917490 | None:intergenic |
| CAACAACCCCTCAACGTTCC+TGG | 0.386716 | 3.3:-43923442 | MS.gene064393:intron |
| CTGCTGAATAAGGATGATAA+TGG | 0.386959 | 3.3:-43917004 | MS.gene064393:CDS |
| GGGAAAGGTGGGTGAGAATA+CGG | 0.390618 | 3.3:+43923482 | None:intergenic |
| AGTTGAAGCCTGAAAATTAT+CGG | 0.396775 | 3.3:+43916799 | None:intergenic |
| TTGTTCTGGAGGCTGAAACC+TGG | 0.404573 | 3.3:+43919612 | None:intergenic |
| CATGTTGAACATCTGCGTTC+TGG | 0.406173 | 3.3:-43921769 | MS.gene064393:CDS |
| GGAGAAGGGTGGTGTAAGTA+TGG | 0.407920 | 3.3:+43923503 | None:intergenic |
| AATACGGGTATCTCCTTTCA+AGG | 0.410281 | 3.3:-43921145 | MS.gene064393:CDS |
| AGTCTTGCACAAAGGATTCA+TGG | 0.412264 | 3.3:-43921059 | MS.gene064393:CDS |
| CTTGTCTCCAACACTTTCAA+TGG | 0.412681 | 3.3:+43922029 | None:intergenic |
| TCCTTCTTCAATCAGAATAT+CGG | 0.414405 | 3.3:+43921318 | None:intergenic |
| GACATCATGTATTTCCTTCA+AGG | 0.416233 | 3.3:+43922059 | None:intergenic |
| ACAACAAAAGGAAACAGAAT+TGG | 0.424477 | 3.3:-43921593 | MS.gene064393:CDS |
| ATTCTGTTTCTCGCAGTTCA+GGG | 0.426340 | 3.3:+43921831 | None:intergenic |
| ACTCCCTTGGGCATGACAGC+TGG | 0.427412 | 3.3:+43917154 | None:intergenic |
| CAAGCGTGGTCCTGGTTCTC+AGG | 0.427999 | 3.3:-43919921 | MS.gene064393:CDS |
| ACATCTGTCTTCAGAAGGTC+TGG | 0.430319 | 3.3:-43916738 | MS.gene064393:CDS |
| GCAGAAAAGAACAGAGATCT+AGG | 0.434369 | 3.3:-43919646 | MS.gene064393:CDS |
| GTCGTGACTCTTGTATGAAA+GGG | 0.434408 | 3.3:-43917934 | MS.gene064393:CDS |
| TTGAAGTCTCCTCTTTCGTC+AGG | 0.434521 | 3.3:-43917466 | MS.gene064393:CDS |
| AACGGGAGCAAGCGTGGTCC+TGG | 0.435539 | 3.3:-43919929 | MS.gene064393:CDS |
| TCCGATATTCTGATTGAAGA+AGG | 0.436958 | 3.3:-43921319 | MS.gene064393:CDS |
| TTTCAAGATAATGGCAATGT+TGG | 0.440769 | 3.3:-43922168 | MS.gene064393:intron |
| GAAAGAGGAGACTTCAACTC+TGG | 0.441262 | 3.3:+43917472 | None:intergenic |
| CGGGAGTTCATTTGAAAACA+TGG | 0.445788 | 3.3:-43921179 | MS.gene064393:CDS |
| AACTTTCTTTCTTTCGGCAA+AGG | 0.445900 | 3.3:-43917130 | MS.gene064393:CDS |
| GATGCAGCAGAATTTCTTAT+GGG | 0.447634 | 3.3:-43921970 | MS.gene064393:CDS |
| GGAAGAACAGAGTGGTCATA+AGG | 0.447947 | 3.3:-43921509 | MS.gene064393:CDS |
| CAAGGGTCCAATACCCTTGA+AGG | 0.451166 | 3.3:-43922073 | MS.gene064393:CDS |
| GAAGAAGGAGATTTAGAAGA+GGG | 0.451883 | 3.3:-43921304 | MS.gene064393:CDS |
| AAACAATGAAAGACAACAAA+AGG | 0.454560 | 3.3:-43921605 | MS.gene064393:CDS |
| AGTTGGAGCTTGTTGTGAAA+GGG | 0.455418 | 3.3:-43921888 | MS.gene064393:CDS |
| CGTCGTGACTCTTGTATGAA+AGG | 0.459493 | 3.3:-43917935 | MS.gene064393:CDS |
| TGTGAGAATAGCGCAGTTTG+TGG | 0.460073 | 3.3:+43916950 | None:intergenic |
| CGGGAGCTCGTCTGTAGTAC+AGG | 0.460442 | 3.3:-43921014 | MS.gene064393:intron |
| GAAATTCTGCTGCATCATCT+AGG | 0.474076 | 3.3:+43921977 | None:intergenic |
| AGAAAGAAAGTTGACTCCCT+TGG | 0.474127 | 3.3:+43917141 | None:intergenic |
| AGCAGATGGTTGATGCCAAC+GGG | 0.476005 | 3.3:-43919946 | MS.gene064393:CDS |
| TTTGTATTTCCTGACGAAAG+AGG | 0.479190 | 3.3:+43917457 | None:intergenic |
| ACAACGTTCACCTCTACAAC+AGG | 0.479727 | 3.3:+43917847 | None:intergenic |
| AAACGGTGGAAGGGGAAAGG+TGG | 0.480837 | 3.3:+43923470 | None:intergenic |
| AGTGGAACATGTGCAGATAA+AGG | 0.481118 | 3.3:-43917208 | MS.gene064393:CDS |
| TCAGTCGTTCTGCCATGGAT+TGG | 0.481190 | 3.3:+43916909 | None:intergenic |
| TTGTAGGCGTAGGTATATCT+TGG | 0.482397 | 3.3:+43917506 | None:intergenic |
| GAAAGAAAGTTGACTCCCTT+GGG | 0.483104 | 3.3:+43917142 | None:intergenic |
| ATTCCTTTGGGTGCTGAGGT+AGG | 0.484739 | 3.3:+43917313 | None:intergenic |
| GTTTCACATCTGTCTTCAGA+AGG | 0.486768 | 3.3:-43916743 | MS.gene064393:CDS |
| ATTAAACTATCATCACAAAC+AGG | 0.487070 | 3.3:+43921856 | None:intergenic |
| AGGCGTAGGTATATCTTGGC+TGG | 0.488376 | 3.3:+43917510 | None:intergenic |
| AAGTCGAATTGAGTGCCCTT+TGG | 0.490972 | 3.3:+43916681 | None:intergenic |
| ATCTAGGTGTTAAAAGGCCC+AGG | 0.491420 | 3.3:-43919630 | MS.gene064393:CDS |
| TTGAGTTGAAACGGTGGAAG+GGG | 0.492235 | 3.3:+43923462 | None:intergenic |
| TGTTGAGTTGAAACGGTGGA+AGG | 0.492351 | 3.3:+43923460 | None:intergenic |
| TCACACCAATGTAGAACATA+AGG | 0.494563 | 3.3:-43917359 | MS.gene064393:CDS |
| GGATCACAGCCATTGTAAAT+CGG | 0.496225 | 3.3:-43916843 | MS.gene064393:CDS |
| GCTCCCGTGATCTTTGATAG+AGG | 0.497874 | 3.3:+43921030 | None:intergenic |
| GAGTTGGAGCTTGTTGTGAA+AGG | 0.497925 | 3.3:-43921889 | MS.gene064393:CDS |
| GGAGCAAGAAAACCAGGAAA+AGG | 0.500866 | 3.3:-43922142 | MS.gene064393:CDS |
| TGATTTCAGTCGTTCTGCCA+TGG | 0.505856 | 3.3:+43916904 | None:intergenic |
| CAGCAGATGGTTGATGCCAA+CGG | 0.513664 | 3.3:-43919947 | MS.gene064393:CDS |
| GGTGAGATCGACGGTAAGGA+GGG | 0.516597 | 3.3:+43923533 | None:intergenic |
| AGACTCTGAAATCATTCCTA+TGG | 0.518636 | 3.3:-43923560 | MS.gene064393:CDS |
| TTGAAACGGTGGAAGGGGAA+AGG | 0.519208 | 3.3:+43923467 | None:intergenic |
| AGCATCAAACGTAGGCCAAA+GGG | 0.521645 | 3.3:-43916696 | MS.gene064393:CDS |
| AGGAGAAGAAAAGTAGAAAG+AGG | 0.522514 | 3.3:-43919901 | MS.gene064393:CDS |
| GAGAACTCTGAGTTAAAAGT+TGG | 0.525245 | 3.3:-43922114 | MS.gene064393:CDS |
| AACGGTGGAAGGGGAAAGGT+GGG | 0.526769 | 3.3:+43923471 | None:intergenic |
| GTGGGTGAGAATACGGAGAA+GGG | 0.528000 | 3.3:+43923489 | None:intergenic |
| CATTGAAAGTGTTGGAGACA+AGG | 0.530051 | 3.3:-43922028 | MS.gene064393:CDS |
| ACAGATGATAATGGACGAGT+TGG | 0.532127 | 3.3:-43921905 | MS.gene064393:CDS |
| GAGGTGCAGTCGCAAGTACA+AGG | 0.532562 | 3.3:-43921721 | MS.gene064393:CDS |
| TGAAGAGATCATGATCATAT+GGG | 0.534999 | 3.3:+43917903 | None:intergenic |
| AGTTTGTCCCTTTGTTGACT+CGG | 0.537842 | 3.3:+43921660 | None:intergenic |
| GTTGAGTTGAAACGGTGGAA+GGG | 0.540434 | 3.3:+43923461 | None:intergenic |
| GAAGACAGATGTGAAACAAA+GGG | 0.540909 | 3.3:+43916749 | None:intergenic |
| TTCTGTTTCTCGCAGTTCAG+GGG | 0.542275 | 3.3:+43921832 | None:intergenic |
| TGCTGATGTCAAGGATCCCA+AGG | 0.542510 | 3.3:-43922091 | MS.gene064393:CDS |
| CGGAGGTGAGATCGACGGTA+AGG | 0.543173 | 3.3:+43923529 | None:intergenic |
| CACGAGACCATTGAAAGTGT+TGG | 0.543655 | 3.3:-43922036 | MS.gene064393:CDS |
| GAATGTTGGCATTATATGAA+AGG | 0.545359 | 3.3:-43919574 | MS.gene064393:CDS |
| TGAAGAAGGAGATTTAGAAG+AGG | 0.545846 | 3.3:-43921305 | MS.gene064393:CDS |
| GAGGGGTTGTTGAGTTGAAA+CGG | 0.546877 | 3.3:+43923453 | None:intergenic |
| AGATAATGGCAATGTTGGAA+TGG | 0.553834 | 3.3:-43922163 | MS.gene064393:CDS |
| CAACACTTTCAATGGTCTCG+TGG | 0.554024 | 3.3:+43922037 | None:intergenic |
| GGATTTGAGTGCCAATGCTA+TGG | 0.554777 | 3.3:-43922001 | MS.gene064393:CDS |
| GGTGGGTGAGAATACGGAGA+AGG | 0.555718 | 3.3:+43923488 | None:intergenic |
| AGTACACCACTGAATAATCA+TGG | 0.555772 | 3.3:-43917430 | MS.gene064393:CDS |
| CCTCTTGAACCGATTTACAA+TGG | 0.556834 | 3.3:+43916834 | None:intergenic |
| AAAAGTTGGTGCTGATGTCA+AGG | 0.557812 | 3.3:-43922100 | MS.gene064393:CDS |
| TATTCCTTTAACAAAGTCCA+TGG | 0.562786 | 3.3:-43918449 | MS.gene064393:intron |
| GGATGTACCAGGAACGTTGA+GGG | 0.564123 | 3.3:+43923435 | None:intergenic |
| CGACGGGCATGGTGAGCACA+TGG | 0.565898 | 3.3:+43917953 | None:intergenic |
| GGTGAGAATACGGAGAAGGG+TGG | 0.566031 | 3.3:+43923492 | None:intergenic |
| AACACTGGTTTGTCCTCTAG+CGG | 0.566094 | 3.3:-43921569 | MS.gene064393:CDS |
| TCTAATTCCTTTGGGTGCTG+AGG | 0.566303 | 3.3:+43917309 | None:intergenic |
| ACATCATGTATTTCCTTCAA+GGG | 0.566355 | 3.3:+43922060 | None:intergenic |
| GGAAACAGAATTGGTAACAC+TGG | 0.567719 | 3.3:-43921584 | MS.gene064393:CDS |
| GATGCCAACGGGAGCAAGCG+TGG | 0.568508 | 3.3:-43919935 | MS.gene064393:CDS |
| CAATATCATTCCTTCTGCAG+TGG | 0.568846 | 3.3:+43917075 | None:intergenic |
| AAGCATCAAACGTAGGCCAA+AGG | 0.569936 | 3.3:-43916697 | MS.gene064393:CDS |
| CGGTAAGGAGGGAAAGCCAT+AGG | 0.571480 | 3.3:+43923544 | None:intergenic |
| TTGCAAGCATTTGTAGGCGT+AGG | 0.572990 | 3.3:+43917496 | None:intergenic |
| ACTAGCAAGAAGCGTAGCTG+AGG | 0.573123 | 3.3:+43916772 | None:intergenic |
| TCTATTCACTCCACTGCAGA+AGG | 0.576435 | 3.3:-43917085 | MS.gene064393:CDS |
| CCACTGAATAATCATGGCAC+TGG | 0.577523 | 3.3:-43917424 | MS.gene064393:CDS |
| ATCTCTTCCTACTATTCAAG+AGG | 0.577525 | 3.3:-43921545 | MS.gene064393:CDS |
| CATGTGTCCGAGTCAACAAA+GGG | 0.577612 | 3.3:-43921667 | MS.gene064393:CDS |
| ATCATCTAGGACCATAGCAT+TGG | 0.578913 | 3.3:+43921990 | None:intergenic |
| GAAACCTCTATCAAAGATCA+CGG | 0.581860 | 3.3:-43921034 | MS.gene064393:CDS |
| CTTAATCAACTTGACTCGGA+AGG | 0.583971 | 3.3:-43921694 | MS.gene064393:CDS |
| TGAAGACAGATGTGAAACAA+AGG | 0.585226 | 3.3:+43916748 | None:intergenic |
| TGGAATGGAGCAAGAAAACC+AGG | 0.585974 | 3.3:-43922148 | MS.gene064393:CDS |
| GGAGAAGAAAAGTAGAAAGA+GGG | 0.586066 | 3.3:-43919900 | MS.gene064393:intron |
| AGACACGGTACAACCAAACA+AGG | 0.587232 | 3.3:-43917245 | MS.gene064393:CDS |
| AGGTGAGATCGACGGTAAGG+AGG | 0.587724 | 3.3:+43923532 | None:intergenic |
| TATTCCAGCTGTCATGCCCA+AGG | 0.588364 | 3.3:-43917158 | MS.gene064393:CDS |
| TCTGTTTCTCGCAGTTCAGG+GGG | 0.593070 | 3.3:+43921833 | None:intergenic |
| TGTCACCTTATGTTCTACAT+TGG | 0.595277 | 3.3:+43917354 | None:intergenic |
| ACACTGGTTTGTCCTCTAGC+GGG | 0.597450 | 3.3:-43921568 | MS.gene064393:CDS |
| GCATTGAATATGACAGAAGA+TGG | 0.598965 | 3.3:-43921439 | MS.gene064393:CDS |
| GGGTGGTGTAAGTATGGCTG+CGG | 0.599371 | 3.3:+43923509 | None:intergenic |
| ATTAGATGGAAAGCCTTGAA+AGG | 0.601531 | 3.3:+43921132 | None:intergenic |
| CCATTGTAAATCGGTTCAAG+AGG | 0.603158 | 3.3:-43916834 | MS.gene064393:CDS |
| TTGGATGAGATTGAGAAACC+CGG | 0.603712 | 3.3:-43921199 | MS.gene064393:CDS |
| AGGACCACGCTTGCTCCCGT+TGG | 0.604273 | 3.3:+43919931 | None:intergenic |
| GAGTGTTGATGCTAACAGAA+AGG | 0.604320 | 3.3:-43920604 | MS.gene064393:CDS |
| TACAAGAGTCACGACGGGCA+TGG | 0.604335 | 3.3:+43917942 | None:intergenic |
| TCAAGAGGGTGAAATTGAGA+AGG | 0.606957 | 3.3:-43921530 | MS.gene064393:CDS |
| ATTGAAAGTGTTGGAGACAA+GGG | 0.607556 | 3.3:-43922027 | MS.gene064393:CDS |
| TCATGTGTCCGAGTCAACAA+AGG | 0.608096 | 3.3:-43921668 | MS.gene064393:CDS |
| AGAGCTTAATCAACTTGACT+CGG | 0.611851 | 3.3:-43921698 | MS.gene064393:CDS |
| TGGATGAGATTGAGAAACCC+GGG | 0.616226 | 3.3:-43921198 | MS.gene064393:CDS |
| CACGTCTGAAAGTGTAAGTG+AGG | 0.619677 | 3.3:-43921740 | MS.gene064393:CDS |
| TTCAGCTGATGATTCTGTGA+GGG | 0.619873 | 3.3:-43916864 | MS.gene064393:CDS |
| TCGTGACTCTTGTATGAAAG+GGG | 0.621109 | 3.3:-43917933 | MS.gene064393:CDS |
| TCTAAAGGCTCCTGTTGTAG+AGG | 0.622148 | 3.3:-43917857 | MS.gene064393:CDS |
| AAACCTCTATCAAAGATCAC+GGG | 0.623432 | 3.3:-43921033 | MS.gene064393:CDS |
| TGGTGTAAGTATGGCTGCGG+AGG | 0.626165 | 3.3:+43923512 | None:intergenic |
| GATGTACCAGGAACGTTGAG+GGG | 0.626758 | 3.3:+43923436 | None:intergenic |
| GTTGGAGCTTGTTGTGAAAG+GGG | 0.628380 | 3.3:-43921887 | MS.gene064393:CDS |
| AGGATGTACCAGGAACGTTG+AGG | 0.633592 | 3.3:+43923434 | None:intergenic |
| GTAGGAAGAGATCCCGCTAG+AGG | 0.633801 | 3.3:+43921556 | None:intergenic |
| GAACCATCTACACAAACAGA+TGG | 0.637190 | 3.3:-43921940 | MS.gene064393:CDS |
| ACTTGATGTACTACTAATCA+CGG | 0.640241 | 3.3:+43921630 | None:intergenic |
| ATTCCAGCTGTCATGCCCAA+GGG | 0.640386 | 3.3:-43917157 | MS.gene064393:CDS |
| AAACCAAAATTGACTGACTG+AGG | 0.641965 | 3.3:+43917046 | None:intergenic |
| TTGAATATGACAGAAGATGG+TGG | 0.642220 | 3.3:-43921436 | MS.gene064393:CDS |
| CACATTTGATGTGTCTTCTG+CGG | 0.643979 | 3.3:-43921248 | MS.gene064393:CDS |
| AAGTGTTGGAGACAAGGGCA+AGG | 0.644118 | 3.3:-43922022 | MS.gene064393:CDS |
| TTTCATACAAGAGTCACGAC+GGG | 0.644579 | 3.3:+43917937 | None:intergenic |
| GATGTTCAACATGTTCTACT+CGG | 0.659808 | 3.3:+43921779 | None:intergenic |
| AAGCCTACCTCAGCACCCAA+AGG | 0.664036 | 3.3:-43917316 | MS.gene064393:CDS |
| GGCTGCGGAGGTGAGATCGA+CGG | 0.667492 | 3.3:+43923524 | None:intergenic |
| CTTTCATACAAGAGTCACGA+CGG | 0.670545 | 3.3:+43917936 | None:intergenic |
| TTAGACACAAAATTGGAACA+AGG | 0.673175 | 3.3:+43917875 | None:intergenic |
| GCTGATGTCAAGGATCCCAA+GGG | 0.678207 | 3.3:-43922090 | MS.gene064393:CDS |
| CCAGTGCCATGATTATTCAG+TGG | 0.679404 | 3.3:+43917424 | None:intergenic |
| GGGTTGTTGAGTTGAAACGG+TGG | 0.681204 | 3.3:+43923456 | None:intergenic |
| TCTCTTCCTACTATTCAAGA+GGG | 0.684623 | 3.3:-43921544 | MS.gene064393:CDS |
| TAGTACACCAAAACAAGACA+CGG | 0.696951 | 3.3:-43917260 | MS.gene064393:CDS |
| ATTCAGCTGATGATTCTGTG+AGG | 0.697116 | 3.3:-43916865 | MS.gene064393:CDS |
| GACACGGTACAACCAAACAA+GGG | 0.697668 | 3.3:-43917244 | MS.gene064393:CDS |
| GCTAACAGAAAGGAACAAAG+TGG | 0.700781 | 3.3:-43920594 | MS.gene064393:CDS |
| CATAAACAAGCATCAAACGT+AGG | 0.703000 | 3.3:-43916704 | MS.gene064393:CDS |
| AGATAAAGGTCAAAATACTG+CGG | 0.725271 | 3.3:-43917194 | MS.gene064393:CDS |
| ATTGAGAAGGAAGAACAGAG+TGG | 0.726299 | 3.3:-43921517 | MS.gene064393:CDS |
| AACTGCGAGAAACAGAATAG+CGG | 0.734818 | 3.3:-43921826 | MS.gene064393:CDS |
| TATCTGCACATGTTCCACTG+TGG | 0.736675 | 3.3:+43917212 | None:intergenic |
| AAGGGAAATCTTGTCCACAG+TGG | 0.738177 | 3.3:-43917226 | MS.gene064393:CDS |
| TATGAAAGGAAAATGCCATG+AGG | 0.742938 | 3.3:-43919560 | MS.gene064393:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 43916637 | 43923593 | 43916637 | ID=MS.gene064393 |
| chr3.3 | mRNA | 43916637 | 43923593 | 43916637 | ID=MS.gene064393.t1;Parent=MS.gene064393 |
| chr3.3 | exon | 43923443 | 43923593 | 43923443 | ID=MS.gene064393.t1.exon1;Parent=MS.gene064393.t1 |
| chr3.3 | CDS | 43923443 | 43923593 | 43923443 | ID=cds.MS.gene064393.t1;Parent=MS.gene064393.t1 |
| chr3.3 | exon | 43921015 | 43922183 | 43921015 | ID=MS.gene064393.t1.exon2;Parent=MS.gene064393.t1 |
| chr3.3 | CDS | 43921015 | 43922183 | 43921015 | ID=cds.MS.gene064393.t1;Parent=MS.gene064393.t1 |
| chr3.3 | exon | 43920563 | 43920628 | 43920563 | ID=MS.gene064393.t1.exon3;Parent=MS.gene064393.t1 |
| chr3.3 | CDS | 43920563 | 43920628 | 43920563 | ID=cds.MS.gene064393.t1;Parent=MS.gene064393.t1 |
| chr3.3 | exon | 43919901 | 43919966 | 43919901 | ID=MS.gene064393.t1.exon4;Parent=MS.gene064393.t1 |
| chr3.3 | CDS | 43919901 | 43919966 | 43919901 | ID=cds.MS.gene064393.t1;Parent=MS.gene064393.t1 |
| chr3.3 | exon | 43919561 | 43919689 | 43919561 | ID=MS.gene064393.t1.exon5;Parent=MS.gene064393.t1 |
| chr3.3 | CDS | 43919561 | 43919689 | 43919561 | ID=cds.MS.gene064393.t1;Parent=MS.gene064393.t1 |
| chr3.3 | exon | 43918450 | 43918500 | 43918450 | ID=MS.gene064393.t1.exon6;Parent=MS.gene064393.t1 |
| chr3.3 | CDS | 43918450 | 43918500 | 43918450 | ID=cds.MS.gene064393.t1;Parent=MS.gene064393.t1 |
| chr3.3 | exon | 43917832 | 43917975 | 43917832 | ID=MS.gene064393.t1.exon7;Parent=MS.gene064393.t1 |
| chr3.3 | CDS | 43917832 | 43917975 | 43917832 | ID=cds.MS.gene064393.t1;Parent=MS.gene064393.t1 |
| chr3.3 | exon | 43916637 | 43917539 | 43916637 | ID=MS.gene064393.t1.exon8;Parent=MS.gene064393.t1 |
| chr3.3 | CDS | 43916637 | 43917539 | 43916637 | ID=cds.MS.gene064393.t1;Parent=MS.gene064393.t1 |
| Gene Sequence |
| Protein sequence |
