Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064482.t1 | XP_003590456.1 | 94.5 | 183 | 8 | 2 | 1 | 183 | 1 | 181 | 2.60E-76 | 295 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064482.t1 | Q9SJK7 | 51.0 | 153 | 59 | 2 | 47 | 199 | 40 | 176 | 9.2e-30 | 131.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064482.t1 | G7IA90 | 94.5 | 183 | 8 | 2 | 1 | 183 | 1 | 181 | 1.9e-76 | 295.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064482.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064482.t1 | MTR_1g063870 | 94.686 | 207 | 8 | 3 | 1 | 206 | 1 | 205 | 3.46e-103 | 296 |
| MS.gene064482.t1 | MTR_7g028160 | 60.577 | 104 | 36 | 2 | 15 | 118 | 20 | 118 | 1.31e-36 | 129 |
| MS.gene064482.t1 | MTR_2g006150 | 60.000 | 100 | 29 | 1 | 14 | 113 | 105 | 193 | 3.50e-35 | 129 |
| MS.gene064482.t1 | MTR_2g006150 | 60.000 | 100 | 29 | 1 | 14 | 113 | 105 | 193 | 3.74e-35 | 129 |
| MS.gene064482.t1 | MTR_8g033070 | 78.378 | 74 | 16 | 0 | 49 | 122 | 79 | 152 | 3.89e-35 | 126 |
| MS.gene064482.t1 | MTR_4g108370 | 73.171 | 82 | 19 | 1 | 31 | 112 | 81 | 159 | 5.66e-35 | 128 |
| MS.gene064482.t1 | MTR_5g039600 | 73.684 | 76 | 20 | 0 | 49 | 124 | 66 | 141 | 9.41e-35 | 127 |
| MS.gene064482.t1 | MTR_1g114380 | 72.500 | 80 | 17 | 2 | 34 | 112 | 20 | 95 | 1.95e-34 | 123 |
| MS.gene064482.t1 | MTR_1g038650 | 68.235 | 85 | 21 | 2 | 39 | 121 | 25 | 105 | 4.70e-34 | 121 |
| MS.gene064482.t1 | MTR_1g101810 | 73.077 | 78 | 21 | 0 | 45 | 122 | 59 | 136 | 1.39e-33 | 122 |
| MS.gene064482.t1 | MTR_1g101810 | 76.000 | 75 | 18 | 0 | 48 | 122 | 92 | 166 | 2.84e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064482.t1 | AT2G37000 | 55.556 | 144 | 46 | 4 | 50 | 192 | 43 | 169 | 3.47e-40 | 135 |
| MS.gene064482.t1 | AT1G58100 | 57.627 | 118 | 39 | 2 | 48 | 154 | 58 | 175 | 2.48e-36 | 131 |
| MS.gene064482.t1 | AT1G69690 | 67.816 | 87 | 25 | 2 | 28 | 113 | 31 | 115 | 1.12e-35 | 128 |
| MS.gene064482.t1 | AT1G72010 | 72.973 | 74 | 20 | 0 | 39 | 112 | 52 | 125 | 6.72e-35 | 127 |
| MS.gene064482.t1 | AT5G08330 | 76.316 | 76 | 14 | 1 | 50 | 121 | 31 | 106 | 7.82e-35 | 123 |
| MS.gene064482.t1 | AT3G47620 | 76.000 | 75 | 17 | 1 | 39 | 112 | 105 | 179 | 9.31e-35 | 128 |
| MS.gene064482.t1 | AT3G27010 | 62.626 | 99 | 30 | 3 | 19 | 111 | 42 | 139 | 4.31e-34 | 123 |
| MS.gene064482.t1 | AT3G27010 | 62.626 | 99 | 30 | 3 | 19 | 111 | 42 | 139 | 4.31e-34 | 123 |
| MS.gene064482.t1 | AT2G45680 | 77.027 | 74 | 17 | 0 | 49 | 122 | 74 | 147 | 5.38e-34 | 124 |
| MS.gene064482.t1 | AT5G23280 | 65.556 | 90 | 30 | 1 | 51 | 140 | 40 | 128 | 1.50e-33 | 120 |
| MS.gene064482.t1 | AT5G51910 | 70.370 | 81 | 23 | 1 | 43 | 122 | 49 | 129 | 4.36e-32 | 117 |
| MS.gene064482.t1 | AT5G51910 | 70.370 | 81 | 23 | 1 | 43 | 122 | 49 | 129 | 4.36e-32 | 117 |
| MS.gene064482.t1 | AT1G35560 | 78.462 | 65 | 14 | 0 | 48 | 112 | 53 | 117 | 6.96e-32 | 118 |
| MS.gene064482.t1 | AT5G41030 | 59.302 | 86 | 32 | 1 | 47 | 132 | 65 | 147 | 7.83e-31 | 113 |
| MS.gene064482.t1 | AT3G45150 | 45.455 | 99 | 50 | 2 | 48 | 142 | 15 | 113 | 2.36e-22 | 89.4 |
| MS.gene064482.t1 | AT1G58100 | 41.525 | 118 | 34 | 3 | 48 | 154 | 58 | 151 | 1.76e-15 | 74.3 |
Find 84 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGGTTTGGTTTCTGAT+TGG | 0.336354 | 1.4:-52417709 | None:intergenic |
| CGACTGTTGGTCCCGGCGGT+GGG | 0.366142 | 1.4:+52418077 | MS.gene064482:CDS |
| ACGACTGTTGGTCCCGGCGG+TGG | 0.373764 | 1.4:+52418076 | MS.gene064482:CDS |
| GGAAGGTTTGGTTTCTGATT+GGG | 0.382038 | 1.4:-52417708 | None:intergenic |
| ACTGTTGGTCCCGGCGGTGG+GGG | 0.398278 | 1.4:+52418079 | MS.gene064482:CDS |
| TGTTACGGCGGTGGAAGGTT+TGG | 0.414434 | 1.4:-52417720 | None:intergenic |
| TCGGACGGTGAGTTTGGTGT+TGG | 0.415353 | 1.4:-52417771 | None:intergenic |
| CGGACGGTGAGTTTGGTGTT+GGG | 0.422384 | 1.4:-52417770 | None:intergenic |
| CGGTCCGGCGGGTACAGTTC+CGG | 0.423262 | 1.4:-52417987 | None:intergenic |
| AGGTCTTCGGACGGTGAGTT+TGG | 0.426516 | 1.4:-52417777 | None:intergenic |
| TCTGTCTCAGCCGGCGGGGA+TGG | 0.435193 | 1.4:+52418153 | MS.gene064482:CDS |
| CTTGGTGTGACGGTCTTTAG+TGG | 0.437844 | 1.4:-52417813 | None:intergenic |
| GGTGGCGACGGTGGTTGTTA+CGG | 0.437898 | 1.4:-52417735 | None:intergenic |
| GACTGTTGGTCCCGGCGGTG+GGG | 0.441550 | 1.4:+52418078 | MS.gene064482:CDS |
| CAGCCGGCGGGGATGGATTA+CGG | 0.446891 | 1.4:+52418160 | MS.gene064482:CDS |
| TTTGGTGTTGGGATCGGAAG+AGG | 0.447134 | 1.4:-52417759 | None:intergenic |
| GCATACGGACACGGCGGCCA+CGG | 0.450952 | 1.4:-52417844 | None:intergenic |
| CTTGATCTGTCTCAGCCGGC+GGG | 0.459940 | 1.4:+52418148 | MS.gene064482:CDS |
| GTTGGGATCGGAAGAGGTGG+TGG | 0.463601 | 1.4:-52417753 | None:intergenic |
| TTCTCCGTTTAAATCTTCCT+CGG | 0.465430 | 1.4:+52418021 | MS.gene064482:CDS |
| CGGCAGCTCGGCTGTTGCAT+CGG | 0.466946 | 1.4:-52418124 | None:intergenic |
| CCGTCGATCATCGCCGCTAC+AGG | 0.469019 | 1.4:+52417962 | MS.gene064482:CDS |
| ATCGAGAGGTGGAAGGTCTT+CGG | 0.469473 | 1.4:-52417790 | None:intergenic |
| GGCCGTTGACCTTGGTGTGA+CGG | 0.473677 | 1.4:-52417823 | None:intergenic |
| AACGGAGAAGAGGTGGAAAC+CGG | 0.477385 | 1.4:-52418007 | None:intergenic |
| CGGCGCAGAGTGGCGGCATA+CGG | 0.487397 | 1.4:-52417859 | None:intergenic |
| GACCTAGCTCACGTGTGAGC+TGG | 0.488472 | 1.4:-52417892 | None:intergenic |
| ATCGGAAGAGGTGGTGGCGA+CGG | 0.493308 | 1.4:-52417747 | None:intergenic |
| TAAATCTTCCTCGGTGCCGT+CGG | 0.494734 | 1.4:+52418030 | MS.gene064482:CDS |
| GCGGCCACGGCCGTTGACCT+TGG | 0.496284 | 1.4:-52417831 | None:intergenic |
| GGTGAGTTTGGTGTTGGGAT+CGG | 0.500790 | 1.4:-52417765 | None:intergenic |
| CCTGCGACGACTGTTGGTCC+CGG | 0.506030 | 1.4:+52418070 | MS.gene064482:CDS |
| CAGCTCGGCTGTTGCATCGG+CGG | 0.511331 | 1.4:-52418121 | None:intergenic |
| GGTGTTGGGATCGGAAGAGG+TGG | 0.520667 | 1.4:-52417756 | None:intergenic |
| CGGAACTGTACCCGCCGGAC+CGG | 0.521186 | 1.4:+52417988 | MS.gene064482:CDS |
| CTGTTGGTCCCGGCGGTGGG+GGG | 0.522672 | 1.4:+52418080 | MS.gene064482:CDS |
| AGAAGAGGTGGAAACCGGTC+CGG | 0.523967 | 1.4:-52418002 | None:intergenic |
| CACACCAAGGTCAACGGCCG+TGG | 0.526935 | 1.4:+52417827 | MS.gene064482:CDS |
| ATCATCGCCGCTACAGGTAC+CGG | 0.527492 | 1.4:+52417968 | MS.gene064482:CDS |
| GTGGTTGTTACGGCGGTGGA+AGG | 0.530957 | 1.4:-52417725 | None:intergenic |
| GACGGTGGTTGTTACGGCGG+TGG | 0.541430 | 1.4:-52417729 | None:intergenic |
| TTCCAGCTCACACGTGAGCT+AGG | 0.544068 | 1.4:+52417890 | MS.gene064482:CDS |
| GGCACCGAGGAAGATTTAAA+CGG | 0.544702 | 1.4:-52418025 | None:intergenic |
| GTTCAGCCTGCGACGACTGT+TGG | 0.545652 | 1.4:+52418064 | MS.gene064482:CDS |
| ATTCTAGCGGCGCAGAGTGG+CGG | 0.558629 | 1.4:-52417866 | None:intergenic |
| AGATTTAAACGGAGAAGAGG+TGG | 0.560800 | 1.4:-52418014 | None:intergenic |
| CCGGGACCAACAGTCGTCGC+AGG | 0.565010 | 1.4:-52418070 | None:intergenic |
| CCGTCTTGATCTGTCTCAGC+CGG | 0.565249 | 1.4:+52418144 | MS.gene064482:CDS |
| TGGATTACGGTACGGCGAGT+AGG | 0.570701 | 1.4:+52418173 | MS.gene064482:CDS |
| GGAAGAGGTGGTGGCGACGG+TGG | 0.571531 | 1.4:-52417744 | None:intergenic |
| GAGGTGGAAACCGGTCCGGC+GGG | 0.573654 | 1.4:-52417998 | None:intergenic |
| TCTTGATCTGTCTCAGCCGG+CGG | 0.576662 | 1.4:+52418147 | MS.gene064482:CDS |
| CCTGTAGCGGCGATGATCGA+CGG | 0.581417 | 1.4:-52417962 | None:intergenic |
| AGAGGTGGAAACCGGTCCGG+CGG | 0.588411 | 1.4:-52417999 | None:intergenic |
| GACCGTCACACCAAGGTCAA+CGG | 0.592588 | 1.4:+52417821 | MS.gene064482:CDS |
| GTCTTTAGTGGATCGAGAGG+TGG | 0.595562 | 1.4:-52417801 | None:intergenic |
| TGCAAAAGCAGCGACGTGAA+CGG | 0.596315 | 1.4:-52418208 | None:intergenic |
| TACAGTTCCGGTACCTGTAG+CGG | 0.607175 | 1.4:-52417975 | None:intergenic |
| GGAAGATTTAAACGGAGAAG+AGG | 0.611799 | 1.4:-52418017 | None:intergenic |
| TACAACAATGTCTTCATCAG+AGG | 0.612302 | 1.4:+52417661 | None:intergenic |
| CGATCGTTTCACCGTCGGAA+CGG | 0.615737 | 1.4:-52417916 | None:intergenic |
| GACAGATCAAGACGGCAGCT+CGG | 0.621421 | 1.4:-52418136 | None:intergenic |
| AGAGTGGCGGCATACGGACA+CGG | 0.630769 | 1.4:-52417853 | None:intergenic |
| ATTGGGTTTGAGAGAATGTG+TGG | 0.635459 | 1.4:-52417691 | None:intergenic |
| GGCGGGGATGGATTACGGTA+CGG | 0.635493 | 1.4:+52418165 | MS.gene064482:CDS |
| GGCGACGGTGGTTGTTACGG+CGG | 0.645530 | 1.4:-52417732 | None:intergenic |
| GTACCGTAATCCATCCCCGC+CGG | 0.646703 | 1.4:-52418163 | None:intergenic |
| CCACTCGATCGTTTCACCGT+CGG | 0.646740 | 1.4:-52417921 | None:intergenic |
| GAGCTAGGTCACCGTTCCGA+CGG | 0.649168 | 1.4:+52417905 | MS.gene064482:CDS |
| ACGGTCTTTAGTGGATCGAG+AGG | 0.661410 | 1.4:-52417804 | None:intergenic |
| TTAGTGGATCGAGAGGTGGA+AGG | 0.665756 | 1.4:-52417797 | None:intergenic |
| CACTAAAGACCGTCACACCA+AGG | 0.674968 | 1.4:+52417814 | MS.gene064482:CDS |
| ACAAGAAACCGACGGCACCG+AGG | 0.684600 | 1.4:-52418038 | None:intergenic |
| AGAGGTGGAAGGTCTTCGGA+CGG | 0.686301 | 1.4:-52417786 | None:intergenic |
| TGAACATGACAAGAAACCGA+CGG | 0.690502 | 1.4:-52418046 | None:intergenic |
| CCGGCTGAGACAGATCAAGA+CGG | 0.695161 | 1.4:-52418144 | None:intergenic |
| AAGATTCTAGCGGCGCAGAG+TGG | 0.698200 | 1.4:-52417869 | None:intergenic |
| CCGACGGTGAAACGATCGAG+TGG | 0.701087 | 1.4:+52417921 | MS.gene064482:CDS |
| TTGATCTGTCTCAGCCGGCG+GGG | 0.711774 | 1.4:+52418149 | MS.gene064482:CDS |
| GGTACCGGAACTGTACCCGC+CGG | 0.715248 | 1.4:+52417983 | MS.gene064482:CDS |
| GCGACGACTGTTGGTCCCGG+CGG | 0.729357 | 1.4:+52418073 | MS.gene064482:CDS |
| TGTGAGCTGGAAGATTCTAG+CGG | 0.731020 | 1.4:-52417879 | None:intergenic |
| TTTGCAACCGTCGACCACGG+GGG | 0.740183 | 1.4:+52418225 | MS.gene064482:CDS |
| GTGGCGGCATACGGACACGG+CGG | 0.797562 | 1.4:-52417850 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTCTCCGTTTAAATCTTCCT+CGG | + | chr1.4:52418021-52418040 | MS.gene064482:CDS | 35.0% | |
| AGATTTAAACGGAGAAGAGG+TGG | - | chr1.4:52418017-52418036 | None:intergenic | 40.0% | |
| ATTGGGTTTGAGAGAATGTG+TGG | - | chr1.4:52417694-52417713 | None:intergenic | 40.0% | |
| GGAAGATTTAAACGGAGAAG+AGG | - | chr1.4:52418020-52418039 | None:intergenic | 40.0% | |
| TGAACATGACAAGAAACCGA+CGG | - | chr1.4:52418049-52418068 | None:intergenic | 40.0% | |
| ! | GGAAGGTTTGGTTTCTGATT+GGG | - | chr1.4:52417711-52417730 | None:intergenic | 40.0% |
| ! | TGGAAGGTTTGGTTTCTGAT+TGG | - | chr1.4:52417712-52417731 | None:intergenic | 40.0% |
| TGTGAGCTGGAAGATTCTAG+CGG | - | chr1.4:52417882-52417901 | None:intergenic | 45.0% | |
| ! | GGCACCGAGGAAGATTTAAA+CGG | - | chr1.4:52418028-52418047 | None:intergenic | 45.0% |
| AACGGAGAAGAGGTGGAAAC+CGG | - | chr1.4:52418010-52418029 | None:intergenic | 50.0% | |
| ATCGAGAGGTGGAAGGTCTT+CGG | - | chr1.4:52417793-52417812 | None:intergenic | 50.0% | |
| CACTAAAGACCGTCACACCA+AGG | + | chr1.4:52417814-52417833 | MS.gene064482:CDS | 50.0% | |
| TACAGTTCCGGTACCTGTAG+CGG | - | chr1.4:52417978-52417997 | None:intergenic | 50.0% | |
| TGCAAAAGCAGCGACGTGAA+CGG | - | chr1.4:52418211-52418230 | None:intergenic | 50.0% | |
| ! | ACGGTCTTTAGTGGATCGAG+AGG | - | chr1.4:52417807-52417826 | None:intergenic | 50.0% |
| ! | CTTGGTGTGACGGTCTTTAG+TGG | - | chr1.4:52417816-52417835 | None:intergenic | 50.0% |
| ! | GTCTTTAGTGGATCGAGAGG+TGG | - | chr1.4:52417804-52417823 | None:intergenic | 50.0% |
| ! | TTAGTGGATCGAGAGGTGGA+AGG | - | chr1.4:52417800-52417819 | None:intergenic | 50.0% |
| !! | GGTGAGTTTGGTGTTGGGAT+CGG | - | chr1.4:52417768-52417787 | None:intergenic | 50.0% |
| !! | TAAATCTTCCTCGGTGCCGT+CGG | + | chr1.4:52418030-52418049 | MS.gene064482:CDS | 50.0% |
| !! | TTTGGTGTTGGGATCGGAAG+AGG | - | chr1.4:52417762-52417781 | None:intergenic | 50.0% |
| AAGATTCTAGCGGCGCAGAG+TGG | - | chr1.4:52417872-52417891 | None:intergenic | 55.0% | |
| AGAAGAGGTGGAAACCGGTC+CGG | - | chr1.4:52418005-52418024 | None:intergenic | 55.0% | |
| AGAGGTGGAAGGTCTTCGGA+CGG | - | chr1.4:52417789-52417808 | None:intergenic | 55.0% | |
| AGGTCTTCGGACGGTGAGTT+TGG | - | chr1.4:52417780-52417799 | None:intergenic | 55.0% | |
| ATCATCGCCGCTACAGGTAC+CGG | + | chr1.4:52417968-52417987 | MS.gene064482:CDS | 55.0% | |
| CCACTCGATCGTTTCACCGT+CGG | - | chr1.4:52417924-52417943 | None:intergenic | 55.0% | |
| CCGGCTGAGACAGATCAAGA+CGG | - | chr1.4:52418147-52418166 | None:intergenic | 55.0% | |
| CCGTCTTGATCTGTCTCAGC+CGG | + | chr1.4:52418144-52418163 | MS.gene064482:CDS | 55.0% | |
| CGATCGTTTCACCGTCGGAA+CGG | - | chr1.4:52417919-52417938 | None:intergenic | 55.0% | |
| GACAGATCAAGACGGCAGCT+CGG | - | chr1.4:52418139-52418158 | None:intergenic | 55.0% | |
| GACCGTCACACCAAGGTCAA+CGG | + | chr1.4:52417821-52417840 | MS.gene064482:CDS | 55.0% | |
| TCTTGATCTGTCTCAGCCGG+CGG | + | chr1.4:52418147-52418166 | MS.gene064482:CDS | 55.0% | |
| TGGATTACGGTACGGCGAGT+AGG | + | chr1.4:52418173-52418192 | MS.gene064482:CDS | 55.0% | |
| TGTTACGGCGGTGGAAGGTT+TGG | - | chr1.4:52417723-52417742 | None:intergenic | 55.0% | |
| TTCCAGCTCACACGTGAGCT+AGG | + | chr1.4:52417890-52417909 | MS.gene064482:CDS | 55.0% | |
| ! | CTTTTGCAACCGTCGACCAC+GGG | + | chr1.4:52418223-52418242 | MS.gene064482:CDS | 55.0% |
| ! | GCTTTTGCAACCGTCGACCA+CGG | + | chr1.4:52418222-52418241 | MS.gene064482:CDS | 55.0% |
| ! | TTTTGCAACCGTCGACCACG+GGG | + | chr1.4:52418224-52418243 | MS.gene064482:CDS | 55.0% |
| !! | CGGACGGTGAGTTTGGTGTT+GGG | - | chr1.4:52417773-52417792 | None:intergenic | 55.0% |
| !! | TCGGACGGTGAGTTTGGTGT+TGG | - | chr1.4:52417774-52417793 | None:intergenic | 55.0% |
| !! | TTGTTGATTCTCCTCCCCCG+TGG | - | chr1.4:52418242-52418261 | None:intergenic | 55.0% |
| ACAAGAAACCGACGGCACCG+AGG | - | chr1.4:52418041-52418060 | None:intergenic | 60.0% | |
| AGAGTGGCGGCATACGGACA+CGG | - | chr1.4:52417856-52417875 | None:intergenic | 60.0% | |
| ATTCTAGCGGCGCAGAGTGG+CGG | - | chr1.4:52417869-52417888 | None:intergenic | 60.0% | |
| CCGACGGTGAAACGATCGAG+TGG | + | chr1.4:52417921-52417940 | MS.gene064482:CDS | 60.0% | |
| CCTGTAGCGGCGATGATCGA+CGG | - | chr1.4:52417965-52417984 | None:intergenic | 60.0% | |
| CTTGATCTGTCTCAGCCGGC+GGG | + | chr1.4:52418148-52418167 | MS.gene064482:CDS | 60.0% | |
| GACCTAGCTCACGTGTGAGC+TGG | - | chr1.4:52417895-52417914 | None:intergenic | 60.0% | |
| GAGCTAGGTCACCGTTCCGA+CGG | + | chr1.4:52417905-52417924 | MS.gene064482:CDS | 60.0% | |
| GGTGGCGACGGTGGTTGTTA+CGG | - | chr1.4:52417738-52417757 | None:intergenic | 60.0% | |
| GTACCGTAATCCATCCCCGC+CGG | - | chr1.4:52418166-52418185 | None:intergenic | 60.0% | |
| GTGGTTGTTACGGCGGTGGA+AGG | - | chr1.4:52417728-52417747 | None:intergenic | 60.0% | |
| GTTCAGCCTGCGACGACTGT+TGG | + | chr1.4:52418064-52418083 | MS.gene064482:CDS | 60.0% | |
| GTTGGGATCGGAAGAGGTGG+TGG | - | chr1.4:52417756-52417775 | None:intergenic | 60.0% | |
| TTGATCTGTCTCAGCCGGCG+GGG | + | chr1.4:52418149-52418168 | MS.gene064482:CDS | 60.0% | |
| TTTGCAACCGTCGACCACGG+GGG | + | chr1.4:52418225-52418244 | MS.gene064482:CDS | 60.0% | |
| ! | ATCGGAAGAGGTGGTGGCGA+CGG | - | chr1.4:52417750-52417769 | None:intergenic | 60.0% |
| ! | CGGTGGGGGGATTTTCGGTA+TGG | + | chr1.4:52418093-52418112 | MS.gene064482:CDS | 60.0% |
| ! | GGCCGTTGACCTTGGTGTGA+CGG | - | chr1.4:52417826-52417845 | None:intergenic | 60.0% |
| ! | GGTGTTGGGATCGGAAGAGG+TGG | - | chr1.4:52417759-52417778 | None:intergenic | 60.0% |
| !! | GGCGGGGATGGATTACGGTA+CGG | + | chr1.4:52418165-52418184 | MS.gene064482:CDS | 60.0% |
| ACCGAAAATCCCCCCACCGC+CGG | - | chr1.4:52418092-52418111 | None:intergenic | 65.0% | |
| AGAGGTGGAAACCGGTCCGG+CGG | - | chr1.4:52418002-52418021 | None:intergenic | 65.0% | |
| CACACCAAGGTCAACGGCCG+TGG | + | chr1.4:52417827-52417846 | MS.gene064482:CDS | 65.0% | |
| CAGCTCGGCTGTTGCATCGG+CGG | - | chr1.4:52418124-52418143 | None:intergenic | 65.0% | |
| CCGTCGATCATCGCCGCTAC+AGG | + | chr1.4:52417962-52417981 | MS.gene064482:CDS | 65.0% | |
| CCTGCGACGACTGTTGGTCC+CGG | + | chr1.4:52418070-52418089 | MS.gene064482:CDS | 65.0% | |
| CGGCAGCTCGGCTGTTGCAT+CGG | - | chr1.4:52418127-52418146 | None:intergenic | 65.0% | |
| GACGGTGGTTGTTACGGCGG+TGG | - | chr1.4:52417732-52417751 | None:intergenic | 65.0% | |
| GGCGACGGTGGTTGTTACGG+CGG | - | chr1.4:52417735-52417754 | None:intergenic | 65.0% | |
| TTCTCCTCCCCCGTGGTCGA+CGG | - | chr1.4:52418235-52418254 | None:intergenic | 65.0% | |
| ! | GGTACCGGAACTGTACCCGC+CGG | + | chr1.4:52417983-52418002 | MS.gene064482:CDS | 65.0% |
| !! | CAGCCGGCGGGGATGGATTA+CGG | + | chr1.4:52418160-52418179 | MS.gene064482:CDS | 65.0% |
| ACGACTGTTGGTCCCGGCGG+TGG | + | chr1.4:52418076-52418095 | MS.gene064482:CDS | 70.0% | |
| ACTGTTGGTCCCGGCGGTGG+GGG | + | chr1.4:52418079-52418098 | MS.gene064482:CDS | 70.0% | |
| CCGAAAATCCCCCCACCGCC+GGG | - | chr1.4:52418091-52418110 | None:intergenic | 70.0% | |
| CCGGGACCAACAGTCGTCGC+AGG | - | chr1.4:52418073-52418092 | None:intergenic | 70.0% | |
| CGACTGTTGGTCCCGGCGGT+GGG | + | chr1.4:52418077-52418096 | MS.gene064482:CDS | 70.0% | |
| CGGAACTGTACCCGCCGGAC+CGG | + | chr1.4:52417988-52418007 | MS.gene064482:CDS | 70.0% | |
| CGGCGCAGAGTGGCGGCATA+CGG | - | chr1.4:52417862-52417881 | None:intergenic | 70.0% | |
| CGGTCCGGCGGGTACAGTTC+CGG | - | chr1.4:52417990-52418009 | None:intergenic | 70.0% | |
| GACTGTTGGTCCCGGCGGTG+GGG | + | chr1.4:52418078-52418097 | MS.gene064482:CDS | 70.0% | |
| GAGGTGGAAACCGGTCCGGC+GGG | - | chr1.4:52418001-52418020 | None:intergenic | 70.0% | |
| GCATACGGACACGGCGGCCA+CGG | - | chr1.4:52417847-52417866 | None:intergenic | 70.0% | |
| GCGACGACTGTTGGTCCCGG+CGG | + | chr1.4:52418073-52418092 | MS.gene064482:CDS | 70.0% | |
| GTGGCGGCATACGGACACGG+CGG | - | chr1.4:52417853-52417872 | None:intergenic | 70.0% | |
| TCTGTCTCAGCCGGCGGGGA+TGG | + | chr1.4:52418153-52418172 | MS.gene064482:CDS | 70.0% | |
| ! | CCCGGCGGTGGGGGGATTTT+CGG | + | chr1.4:52418088-52418107 | MS.gene064482:CDS | 70.0% |
| ! | GGAAGAGGTGGTGGCGACGG+TGG | - | chr1.4:52417747-52417766 | None:intergenic | 70.0% |
| CTGTTGGTCCCGGCGGTGGG+GGG | + | chr1.4:52418080-52418099 | MS.gene064482:CDS | 75.0% | |
| GCAACCGTCGACCACGGGGG+AGG | + | chr1.4:52418228-52418247 | MS.gene064482:CDS | 75.0% | |
| GCGGCCACGGCCGTTGACCT+TGG | - | chr1.4:52417834-52417853 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 52417668 | 52418288 | 52417668 | ID=MS.gene064482 |
| chr1.4 | mRNA | 52417668 | 52418288 | 52417668 | ID=MS.gene064482.t1;Parent=MS.gene064482 |
| chr1.4 | exon | 52417668 | 52418288 | 52417668 | ID=MS.gene064482.t1.exon1;Parent=MS.gene064482.t1 |
| chr1.4 | CDS | 52417668 | 52418288 | 52417668 | ID=cds.MS.gene064482.t1;Parent=MS.gene064482.t1 |
| Gene Sequence |
| Protein sequence |
