AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064635

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064635.t1 MTR_6g051425 74.249 233 56 1 1 229 1 233 5.10e-126 372
MS.gene064635.t1 MTR_2g039370 83.784 74 12 0 49 122 98 171 4.10e-36 136
MS.gene064635.t1 MTR_3g465760 73.913 69 14 1 41 105 2 70 1.63e-27 105
MS.gene064635.t1 MTR_4g035820 26.349 315 210 10 18 319 76 381 7.53e-22 99.8
MS.gene064635.t1 MTR_1g083640 27.155 232 146 6 22 232 56 285 8.72e-21 93.2
MS.gene064635.t1 MTR_0558s0020 27.803 223 138 6 28 229 47 267 1.62e-20 92.4
MS.gene064635.t1 MTR_1g013060 27.536 207 140 4 19 218 26 229 5.45e-20 89.4
MS.gene064635.t1 MTR_1g070355 27.404 208 141 6 27 229 84 286 2.37e-17 85.5
MS.gene064635.t1 MTR_8g446020 27.128 188 121 4 56 229 42 227 3.60e-16 79.0
MS.gene064635.t1 MTR_6g090505 23.127 307 170 6 64 325 21 306 4.54e-15 77.4
MS.gene064635.t1 MTR_7g446520 26.840 231 143 4 2 229 77 284 7.55e-15 76.3
MS.gene064635.t1 MTR_0337s0040 28.472 144 102 1 83 225 81 224 1.07e-14 73.9
MS.gene064635.t1 MTR_0402s0040 30.675 163 97 6 29 183 38 192 2.19e-14 75.9
MS.gene064635.t1 MTR_2g098880 32.727 110 64 3 18 121 62 167 2.96e-13 70.1
MS.gene064635.t1 MTR_2g098880 32.727 110 64 3 18 121 74 179 3.59e-13 70.1
MS.gene064635.t1 MTR_5g076070 25.604 207 142 5 29 229 65 265 7.85e-13 69.3
MS.gene064635.t1 MTR_2g014100 27.568 185 111 6 22 185 49 231 9.78e-13 68.6
MS.gene064635.t1 MTR_7g446510 28.235 170 121 1 67 236 131 299 1.20e-12 69.7
MS.gene064635.t1 MTR_7g446480 29.412 136 96 0 101 236 149 284 1.30e-12 69.3
MS.gene064635.t1 MTR_2g098920 29.907 107 74 1 18 124 81 186 7.53e-12 66.2
MS.gene064635.t1 MTR_3g450850 24.583 240 166 7 17 244 47 283 1.87e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064635.t1 AT4G38180 30.973 226 153 3 231 455 420 643 1.10e-29 124
MS.gene064635.t1 AT4G38180 35.211 213 132 4 20 228 76 286 1.70e-28 120
MS.gene064635.t1 AT2G27110 31.169 231 153 4 234 462 225 451 2.33e-29 122
MS.gene064635.t1 AT2G27110 31.169 231 153 4 234 462 370 596 2.87e-29 122
MS.gene064635.t1 AT2G27110 26.852 216 131 5 13 228 45 233 5.25e-15 78.6
MS.gene064635.t1 AT2G27110 31.169 231 153 4 234 462 370 596 2.87e-29 122
MS.gene064635.t1 AT2G27110 26.852 216 131 5 13 228 45 233 5.25e-15 78.6
MS.gene064635.t1 AT4G19990 32.727 220 144 4 230 448 287 503 1.80e-26 114
MS.gene064635.t1 AT4G19990 32.727 220 144 4 230 448 344 560 2.04e-26 114
MS.gene064635.t1 AT4G19990 32.727 220 144 4 230 448 344 560 2.04e-26 114
MS.gene064635.t1 AT4G19990 32.727 220 144 4 230 448 344 560 2.21e-26 114
MS.gene064635.t1 AT4G19990 32.727 220 144 4 230 448 358 574 2.53e-26 114
MS.gene064635.t1 AT4G19990 32.727 220 144 4 230 448 344 560 3.77e-26 113
MS.gene064635.t1 AT4G19990 32.727 220 144 4 230 448 344 560 3.77e-26 113
MS.gene064635.t1 AT1G76320 31.019 216 144 2 232 447 334 544 5.33e-26 112
MS.gene064635.t1 AT1G76320 27.805 205 135 5 27 229 7 200 3.98e-14 75.5
MS.gene064635.t1 AT1G76320 31.019 216 144 2 232 447 334 544 7.22e-26 112
MS.gene064635.t1 AT1G76320 27.805 205 135 5 27 229 7 200 4.69e-14 75.5
MS.gene064635.t1 AT1G76320 31.019 216 144 2 232 447 334 544 8.00e-26 112
MS.gene064635.t1 AT1G76320 27.805 205 135 5 27 229 7 200 5.08e-14 75.5
MS.gene064635.t1 AT1G76320 31.019 216 144 2 232 447 334 544 8.00e-26 112
MS.gene064635.t1 AT1G76320 27.805 205 135 5 27 229 7 200 5.08e-14 75.5
MS.gene064635.t1 AT4G38170 24.771 218 160 3 231 447 185 399 3.57e-25 109
MS.gene064635.t1 AT4G15090 30.137 219 150 2 232 450 397 612 5.30e-25 109
MS.gene064635.t1 AT4G15090 26.977 215 139 5 24 229 58 263 2.10e-16 83.2
MS.gene064635.t1 AT4G15090 30.137 219 150 2 232 450 397 612 5.30e-25 109
MS.gene064635.t1 AT4G15090 26.977 215 139 5 24 229 58 263 2.10e-16 83.2
MS.gene064635.t1 AT4G15090 30.137 219 150 2 232 450 397 612 5.30e-25 109
MS.gene064635.t1 AT4G15090 26.977 215 139 5 24 229 58 263 2.10e-16 83.2
MS.gene064635.t1 AT4G15090 30.137 219 150 2 232 450 397 612 5.30e-25 109
MS.gene064635.t1 AT4G15090 26.977 215 139 5 24 229 58 263 2.10e-16 83.2
MS.gene064635.t1 AT4G15090 30.137 219 150 2 232 450 397 612 5.30e-25 109
MS.gene064635.t1 AT4G15090 26.977 215 139 5 24 229 58 263 2.10e-16 83.2
MS.gene064635.t1 AT3G22170 30.275 218 145 4 233 448 407 619 2.88e-23 104
MS.gene064635.t1 AT3G22170 30.275 218 145 4 233 448 407 619 2.88e-23 104
MS.gene064635.t1 AT3G06250 30.180 222 130 5 235 446 497 703 1.24e-20 96.3
MS.gene064635.t1 AT3G06250 26.761 213 117 4 16 228 189 362 2.03e-14 76.6
MS.gene064635.t1 AT3G06250 30.180 222 130 5 235 446 497 703 1.24e-20 96.3
MS.gene064635.t1 AT3G06250 26.761 213 117 4 16 228 189 362 2.03e-14 76.6
MS.gene064635.t1 AT3G06250 30.180 222 130 5 235 446 497 703 1.24e-20 96.3
MS.gene064635.t1 AT3G06250 26.761 213 117 4 16 228 189 362 2.03e-14 76.6
MS.gene064635.t1 AT5G18960 29.730 222 131 4 235 446 521 727 1.32e-20 96.3
MS.gene064635.t1 AT5G18960 29.730 222 131 4 235 446 521 727 1.32e-20 96.3
MS.gene064635.t1 AT2G32250 26.047 215 156 2 232 446 341 552 5.00e-20 94.4
MS.gene064635.t1 AT2G32250 26.047 215 156 2 232 446 341 552 5.32e-20 94.4
MS.gene064635.t1 AT2G32250 26.047 215 156 2 232 446 341 552 5.32e-20 94.4
MS.gene064635.t1 AT2G32250 26.047 215 156 2 232 446 341 552 5.32e-20 94.4
MS.gene064635.t1 AT2G32250 26.047 215 156 2 232 446 300 511 5.49e-20 94.4
MS.gene064635.t1 AT2G32250 26.047 215 156 2 232 446 341 552 5.65e-20 94.4
MS.gene064635.t1 AT2G32250 26.047 215 156 2 232 446 341 552 5.65e-20 94.4
MS.gene064635.t1 AT2G32250 26.047 215 156 2 232 446 300 511 5.93e-20 94.0
MS.gene064635.t1 AT1G10240 28.879 232 154 6 231 461 398 619 3.55e-17 85.1
MS.gene064635.t1 AT1G10240 29.032 217 143 5 18 226 49 262 1.92e-15 79.7
MS.gene064635.t1 AT1G10240 28.879 232 154 6 231 461 398 619 3.55e-17 85.1
MS.gene064635.t1 AT1G10240 29.032 217 143 5 18 226 49 262 1.92e-15 79.7
MS.gene064635.t1 AT1G52520 25.188 266 163 7 235 481 420 668 7.19e-17 84.3
MS.gene064635.t1 AT1G52520 27.358 212 140 4 19 229 87 285 1.13e-12 71.2
MS.gene064635.t1 AT5G28530 26.432 227 150 4 18 229 56 280 9.78e-14 74.3
MS.gene064635.t1 AT5G28530 26.432 227 150 4 18 229 56 280 1.11e-13 74.3
MS.gene064635.t1 AT5G28530 22.222 234 170 3 234 467 416 637 1.64e-13 73.6
MS.gene064635.t1 AT5G28530 26.432 227 150 4 18 229 56 280 1.11e-13 74.3
MS.gene064635.t1 AT5G28530 22.222 234 170 3 234 467 416 637 1.64e-13 73.6
MS.gene064635.t1 AT5G28530 22.222 234 170 3 234 467 353 574 1.93e-13 73.6
MS.gene064635.t1 AT5G28530 29.282 181 119 4 18 192 56 233 2.00e-12 70.1
MS.gene064635.t1 AT1G80010 24.898 245 140 6 229 449 439 663 7.36e-13 71.6
MS.gene064635.t1 AT5G28530 29.282 181 119 4 18 192 56 233 1.67e-12 70.5
MS.gene064635.t1 AT3G59470 33.010 103 68 1 18 120 71 172 2.92e-12 67.4
MS.gene064635.t1 AT3G59470 33.010 103 68 1 18 120 71 172 2.92e-12 67.4
MS.gene064635.t1 AT3G59470 33.010 103 68 1 18 120 83 184 3.31e-12 67.4

Find 84 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATATTTGGAATTATTT+AGG 0.090273 3.1:+42290911 MS.gene064635:CDS
GTATACGAGTTACAAATATT+TGG 0.221426 3.1:+42290900 MS.gene064635:CDS
TTGCGGATTTACAATATTAA+AGG 0.235308 3.1:+42292111 MS.gene064635:CDS
CAAATATTTGGAATTATTTA+GGG 0.245589 3.1:+42290912 MS.gene064635:CDS
CTCGTTTGACTAATGTCTTT+TGG 0.253639 3.1:+42291113 MS.gene064635:CDS
TTGTCACAAGTTCGAATCTA+TGG 0.257274 3.1:+42292068 MS.gene064635:CDS
ATTATTCTTAAACCCTTCTT+TGG 0.257903 3.1:-42290657 None:intergenic
TTTGGACTCATCCACTTCTA+TGG 0.267599 3.1:+42292035 MS.gene064635:CDS
GTCTTTATACAATTTAGTTT+TGG 0.305862 3.1:+42292296 MS.gene064635:CDS
ATGTTCGATGGTGATGATTC+CGG 0.340660 3.1:+42292246 MS.gene064635:CDS
ATGTTAGCAAGGAAGGAGTT+TGG 0.356508 3.1:+42290750 MS.gene064635:CDS
ATGTGGGAATTGCTTGATAT+TGG 0.360003 3.1:+42292350 MS.gene064635:CDS
ACCATCTTGTTAAGATGTAT+TGG 0.361271 3.1:-42292152 None:intergenic
GGGTTTAAGAATAATGAATA+TGG 0.371754 3.1:+42290665 MS.gene064635:CDS
AGGAGACCTCATAAAGTCTA+TGG 0.381794 3.1:+42290868 MS.gene064635:CDS
AACAGTAAAACTCTTTAAAA+CGG 0.389800 3.1:-42290634 None:intergenic
CAAGCACATGCCTTCAAAAC+AGG 0.394361 3.1:+42290557 MS.gene064635:CDS
GAAAAGGTGGCGACAATTAG+AGG 0.395021 3.1:+42291783 MS.gene064635:CDS
ATCACCATCGAACATTGAAT+TGG 0.403095 3.1:-42292238 None:intergenic
ATGAATACATATCAACTTCA+TGG 0.408565 3.1:+42291577 MS.gene064635:CDS
TTTAGTGGCATTTGAGAAGA+TGG 0.409481 3.1:+42291759 MS.gene064635:CDS
TGAGAGTACAAATAGTGCTT+TGG 0.413886 3.1:+42291699 MS.gene064635:CDS
TTCTTTGCAGTCATGCTTTG+CGG 0.424200 3.1:+42292094 MS.gene064635:CDS
CAGGATTTAGTGTAAGAAAA+GGG 0.432600 3.1:+42290576 MS.gene064635:CDS
ATCAACTTCATGGGCACAAA+TGG 0.433294 3.1:+42291587 MS.gene064635:CDS
AGTTGAAATTGATTGAAGCT+AGG 0.437702 3.1:+42291005 MS.gene064635:CDS
TGTCAATCAGTTGAAATTGA+TGG 0.438803 3.1:+42290473 MS.gene064635:CDS
ACAGGATTTAGTGTAAGAAA+AGG 0.440176 3.1:+42290575 MS.gene064635:CDS
AGGTTTAATGTTAGCAAGGA+AGG 0.442161 3.1:+42290743 MS.gene064635:CDS
ATAAAGTCTATGGTGAATTC+TGG 0.445432 3.1:+42290878 MS.gene064635:CDS
GTTGAAATTGATTGAAGCTA+GGG 0.446417 3.1:+42291006 MS.gene064635:CDS
AGTGCTTTGGGAGATATTGC+AGG 0.446775 3.1:+42291712 MS.gene064635:CDS
GAGAGTACAAATAGTGCTTT+GGG 0.447442 3.1:+42291700 MS.gene064635:CDS
GACATTTGACATATTTCTCA+TGG 0.451386 3.1:-42290843 None:intergenic
ACAGTAAAACTCTTTAAAAC+GGG 0.452807 3.1:-42290633 None:intergenic
TCTTCAGTTGAATTTAAGTC+AGG 0.456298 3.1:-42292404 None:intergenic
AATTCACCATAGACTTTATG+AGG 0.457499 3.1:-42290874 None:intergenic
TGCTTGATATTGGAGTTAAG+AGG 0.468751 3.1:+42292360 MS.gene064635:CDS
TGTATGCAATTCGCAGCAAA+TGG 0.471481 3.1:+42291620 MS.gene064635:CDS
AACTCTACGACATGCATCCT+TGG 0.475875 3.1:+42291864 MS.gene064635:CDS
GTCGGTGGATATAACAATCT+TGG 0.477476 3.1:+42290941 MS.gene064635:CDS
CTTATGAAAGAGCTGATTCA+AGG 0.480001 3.1:+42290699 MS.gene064635:CDS
CGCAACAAATGTCTTTGCTC+AGG 0.482031 3.1:-42290818 None:intergenic
CTTGTTAAGATGTATTGGTC+AGG 0.483267 3.1:-42292147 None:intergenic
TTGGAATTATTTAGGGGAAG+AGG 0.485109 3.1:+42290919 MS.gene064635:CDS
GGAAGCACTTCCGTGGAGAT+TGG 0.486127 3.1:+42291943 MS.gene064635:CDS
TTACAGTGTGCAGCTAGATC+AGG 0.487131 3.1:+42291087 MS.gene064635:CDS
AATGAGTATCTTAATGGGGC+AGG 0.495180 3.1:+42291919 MS.gene064635:CDS
AAGAAGAATTTCAAACCACT+TGG 0.525111 3.1:+42291545 MS.gene064635:CDS
AAGGACAAATTGCAAAGCTA+TGG 0.528165 3.1:+42290718 MS.gene064635:CDS
GCTTGATATTGGAGTTAAGA+GGG 0.539861 3.1:+42292361 MS.gene064635:CDS
ACCATCGAACATTGAATTGG+AGG 0.542708 3.1:-42292235 None:intergenic
AGAAATATGTCAAATGTCAA+AGG 0.545496 3.1:+42290848 MS.gene064635:CDS
ACCAATACATCTTAACAAGA+TGG 0.554914 3.1:+42292151 MS.gene064635:CDS
ATTTAGTGTAAGAAAAGGGA+GGG 0.556280 3.1:+42290580 MS.gene064635:CDS
ACCTCCAATTCAATGTTCGA+TGG 0.558552 3.1:+42292234 MS.gene064635:CDS
GATTTAGTGTAAGAAAAGGG+AGG 0.567737 3.1:+42290579 MS.gene064635:CDS
AGCGTTGCGGTAAAGAAGAC+CGG 0.568368 3.1:-42292265 None:intergenic
TGTCACAAGTTCGAATCTAT+GGG 0.570742 3.1:+42292069 MS.gene064635:CDS
TAATGAATATGGAGGTGAAG+TGG 0.572461 3.1:+42290676 MS.gene064635:CDS
GAGTATCTTAATGGGGCAGG+TGG 0.572748 3.1:+42291922 MS.gene064635:CDS
TGAATACATATCAACTTCAT+GGG 0.574425 3.1:+42291578 MS.gene064635:CDS
GGTGAGGTTTAATGTTAGCA+AGG 0.579640 3.1:+42290739 MS.gene064635:CDS
ACTGCAGCTAACCATAGAAG+TGG 0.582272 3.1:-42292046 None:intergenic
CTGGTATCAAATCTTCTCAA+AGG 0.583873 3.1:+42291674 MS.gene064635:CDS
TATTTAGGGGAAGAGGTCGG+TGG 0.586341 3.1:+42290926 MS.gene064635:CDS
GGCAGGTGGAAGCACTTCCG+TGG 0.590405 3.1:+42291936 MS.gene064635:CDS
AATTATTTAGGGGAAGAGGT+CGG 0.592715 3.1:+42290923 MS.gene064635:CDS
AGAAGAATTTCAAACCACTT+GGG 0.599091 3.1:+42291546 MS.gene064635:CDS
CATTTGAGAAGATGGTGAAA+AGG 0.603784 3.1:+42291767 MS.gene064635:CDS
TTTAAGAATAATGAATATGG+AGG 0.604513 3.1:+42290668 MS.gene064635:CDS
CTGAGCAAAGACATTTGTTG+CGG 0.611498 3.1:+42290819 MS.gene064635:CDS
TTGAGAAGATGGTGAAAAGG+TGG 0.621585 3.1:+42291770 MS.gene064635:CDS
AATTCGCAGCAAATGGAGCA+CGG 0.624767 3.1:+42291627 MS.gene064635:CDS
CAAATTGCAAAGCTATGGTG+AGG 0.629755 3.1:+42290723 MS.gene064635:CDS
TTTAAATGAGTATCTTAATG+GGG 0.632939 3.1:+42291915 MS.gene064635:CDS
AAATATTTGGAATTATTTAG+GGG 0.632966 3.1:+42290913 MS.gene064635:CDS
TCACTACTGTTTATAACACG+AGG 0.639447 3.1:-42291841 None:intergenic
AACAAATGTCTTTGCTCAGG+AGG 0.641459 3.1:-42290815 None:intergenic
TGCACACTGTAATAGAACAT+AGG 0.647292 3.1:-42291076 None:intergenic
ATTCATCATCTCATCCCAAG+TGG 0.657667 3.1:-42291560 None:intergenic
ATCACATCGACCAATCTCCA+CGG 0.672242 3.1:-42291953 None:intergenic
CTACTGTTTATAACACGAGG+AGG 0.687262 3.1:-42291838 None:intergenic
AAGACTTCAGAATAGCGTTG+CGG 0.703840 3.1:-42292278 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAATAAATGCATGAT+AGG + chr3.1:42291511-42291530 MS.gene064635:intron 15.0%
!!! AAACTTCAATTTCTTTTAAT+TGG + chr3.1:42291296-42291315 MS.gene064635:intron 15.0%
!!! AAATATTTGGAATTATTTAG+GGG + chr3.1:42290913-42290932 MS.gene064635:CDS 15.0%
!!! ACAAATATTTGGAATTATTT+AGG + chr3.1:42290911-42290930 MS.gene064635:CDS 15.0%
!!! CAAATATTTGGAATTATTTA+GGG + chr3.1:42290912-42290931 MS.gene064635:CDS 15.0%
!!! TTTTAAATGAGTATCTTAAT+GGG + chr3.1:42291914-42291933 MS.gene064635:CDS 15.0%
!!! TTTTTAAATGAGTATCTTAA+TGG + chr3.1:42291913-42291932 MS.gene064635:CDS 15.0%
!! TTTAAATGAGTATCTTAATG+GGG + chr3.1:42291915-42291934 MS.gene064635:CDS 20.0%
!! TTTAAGAATAATGAATATGG+AGG + chr3.1:42290668-42290687 MS.gene064635:CDS 20.0%
!!! AACAGTAAAACTCTTTAAAA+CGG - chr3.1:42290637-42290656 None:intergenic 20.0%
!!! GTCTTTATACAATTTAGTTT+TGG + chr3.1:42292296-42292315 MS.gene064635:CDS 20.0%
!!! TGATCTGTAAATATTGTTTT+TGG - chr3.1:42291361-42291380 None:intergenic 20.0%
! ACAAATCATGTCATACTTAT+TGG - chr3.1:42291209-42291228 None:intergenic 25.0%
! AGAAATATGTCAAATGTCAA+AGG + chr3.1:42290848-42290867 MS.gene064635:CDS 25.0%
! ATGAATACATATCAACTTCA+TGG + chr3.1:42291577-42291596 MS.gene064635:CDS 25.0%
! ATTATTCTTAAACCCTTCTT+TGG - chr3.1:42290660-42290679 None:intergenic 25.0%
! GGGTTTAAGAATAATGAATA+TGG + chr3.1:42290665-42290684 MS.gene064635:CDS 25.0%
! GTATACGAGTTACAAATATT+TGG + chr3.1:42290900-42290919 MS.gene064635:CDS 25.0%
! TAAAAACTATATCGTGACTT+TGG + chr3.1:42292017-42292036 MS.gene064635:CDS 25.0%
! TGAATACATATCAACTTCAT+GGG + chr3.1:42291578-42291597 MS.gene064635:CDS 25.0%
! TTGCGGATTTACAATATTAA+AGG + chr3.1:42292111-42292130 MS.gene064635:CDS 25.0%
!! AAAAAAGCACAAAAATCATG+TGG + chr3.1:42292333-42292352 MS.gene064635:CDS 25.0%
!! AAAAAGCACAAAAATCATGT+GGG + chr3.1:42292334-42292353 MS.gene064635:CDS 25.0%
!! AAAGTTGATTATGATTGCTT+TGG + chr3.1:42291151-42291170 MS.gene064635:intron 25.0%
!! AAGTTGATTATGATTGCTTT+GGG + chr3.1:42291152-42291171 MS.gene064635:intron 25.0%
!! GTCACGATATAGTTTTTATT+CGG - chr3.1:42292015-42292034 None:intergenic 25.0%
!! TCACGATATAGTTTTTATTC+GGG - chr3.1:42292014-42292033 None:intergenic 25.0%
!!! AAAGCATTTTTAGAGAGTAT+GGG + chr3.1:42291325-42291344 MS.gene064635:intron 25.0%
!!! ACAGTAAAACTCTTTAAAAC+GGG - chr3.1:42290636-42290655 None:intergenic 25.0%
!!! TAAAGCATTTTTAGAGAGTA+TGG + chr3.1:42291324-42291343 MS.gene064635:intron 25.0%
AAAAAATGCTCCTTCACATT+TGG + chr3.1:42291456-42291475 MS.gene064635:intron 30.0%
AAAAATGCTCCTTCACATTT+GGG + chr3.1:42291457-42291476 MS.gene064635:intron 30.0%
AAGAAGAATTTCAAACCACT+TGG + chr3.1:42291545-42291564 MS.gene064635:CDS 30.0%
AATTCACCATAGACTTTATG+AGG - chr3.1:42290877-42290896 None:intergenic 30.0%
ACAGGATTTAGTGTAAGAAA+AGG + chr3.1:42290575-42290594 MS.gene064635:CDS 30.0%
ACCAATACATCTTAACAAGA+TGG + chr3.1:42292151-42292170 MS.gene064635:CDS 30.0%
ACCATCTTGTTAAGATGTAT+TGG - chr3.1:42292155-42292174 None:intergenic 30.0%
AGAAGAATTTCAAACCACTT+GGG + chr3.1:42291546-42291565 MS.gene064635:CDS 30.0%
AGTTGAAATTGATTGAAGCT+AGG + chr3.1:42291005-42291024 MS.gene064635:CDS 30.0%
AGTTGATTATGATTGCTTTG+GGG + chr3.1:42291153-42291172 MS.gene064635:intron 30.0%
ATAAAGTCTATGGTGAATTC+TGG + chr3.1:42290878-42290897 MS.gene064635:CDS 30.0%
ATGATTTATCCCAACAAATG+GGG - chr3.1:42291233-42291252 None:intergenic 30.0%
ATTTAGTGTAAGAAAAGGGA+GGG + chr3.1:42290580-42290599 MS.gene064635:CDS 30.0%
CAGGATTTAGTGTAAGAAAA+GGG + chr3.1:42290576-42290595 MS.gene064635:CDS 30.0%
GACATTTGACATATTTCTCA+TGG - chr3.1:42290846-42290865 None:intergenic 30.0%
GATGATTTATCCCAACAAAT+GGG - chr3.1:42291234-42291253 None:intergenic 30.0%
GTTGAAATTGATTGAAGCTA+GGG + chr3.1:42291006-42291025 MS.gene064635:CDS 30.0%
TGATGATTTATCCCAACAAA+TGG - chr3.1:42291235-42291254 None:intergenic 30.0%
TGTCAATCAGTTGAAATTGA+TGG + chr3.1:42290473-42290492 MS.gene064635:CDS 30.0%
TTGTTGGGATAAATCATCAT+TGG + chr3.1:42291236-42291255 MS.gene064635:intron 30.0%
! AGTAATCATGTATTTTCTGC+TGG + chr3.1:42291655-42291674 MS.gene064635:CDS 30.0%
! AGTTTTACTGTTCCAAAGAA+GGG + chr3.1:42290645-42290664 MS.gene064635:CDS 30.0%
! GATTTTGTGAGTATATACCA+AGG - chr3.1:42291884-42291903 None:intergenic 30.0%
! GGATGCAAAGATATTTTTCT+TGG + chr3.1:42290494-42290513 MS.gene064635:CDS 30.0%
!! ATGTCTCTCACAATTTTTAG+TGG + chr3.1:42291744-42291763 MS.gene064635:CDS 30.0%
!! TACACTAAATCCTGTTTTGA+AGG - chr3.1:42290570-42290589 None:intergenic 30.0%
AAGGACAAATTGCAAAGCTA+TGG + chr3.1:42290718-42290737 MS.gene064635:CDS 35.0%
AATTATTTAGGGGAAGAGGT+CGG + chr3.1:42290923-42290942 MS.gene064635:CDS 35.0%
AGGTTTAATGTTAGCAAGGA+AGG + chr3.1:42290743-42290762 MS.gene064635:CDS 35.0%
ATCACCATCGAACATTGAAT+TGG - chr3.1:42292241-42292260 None:intergenic 35.0%
ATGTGGGAATTGCTTGATAT+TGG + chr3.1:42292350-42292369 MS.gene064635:CDS 35.0%
CAAGATGGTCAAAAAATGCA+AGG + chr3.1:42292166-42292185 MS.gene064635:CDS 35.0%
CATTGGCAAAATGTCATGTT+TGG + chr3.1:42291253-42291272 MS.gene064635:intron 35.0%
CATTTGAGAAGATGGTGAAA+AGG + chr3.1:42291767-42291786 MS.gene064635:CDS 35.0%
CTGGTATCAAATCTTCTCAA+AGG + chr3.1:42291674-42291693 MS.gene064635:CDS 35.0%
GATTTAGTGTAAGAAAAGGG+AGG + chr3.1:42290579-42290598 MS.gene064635:CDS 35.0%
GCTTGATATTGGAGTTAAGA+GGG + chr3.1:42292361-42292380 MS.gene064635:CDS 35.0%
TAATGAATATGGAGGTGAAG+TGG + chr3.1:42290676-42290695 MS.gene064635:CDS 35.0%
TCACTACTGTTTATAACACG+AGG - chr3.1:42291844-42291863 None:intergenic 35.0%
TGCACACTGTAATAGAACAT+AGG - chr3.1:42291079-42291098 None:intergenic 35.0%
TGCTTGATATTGGAGTTAAG+AGG + chr3.1:42292360-42292379 MS.gene064635:CDS 35.0%
TGTCACAAGTTCGAATCTAT+GGG + chr3.1:42292069-42292088 MS.gene064635:CDS 35.0%
TTGGAATTATTTAGGGGAAG+AGG + chr3.1:42290919-42290938 MS.gene064635:CDS 35.0%
TTGTCACAAGTTCGAATCTA+TGG + chr3.1:42292068-42292087 MS.gene064635:CDS 35.0%
TTTAGTGGCATTTGAGAAGA+TGG + chr3.1:42291759-42291778 MS.gene064635:CDS 35.0%
! CTCGTTTGACTAATGTCTTT+TGG + chr3.1:42291113-42291132 MS.gene064635:CDS 35.0%
! CTTATGAAAGAGCTGATTCA+AGG + chr3.1:42290699-42290718 MS.gene064635:CDS 35.0%
! CTTGTTAAGATGTATTGGTC+AGG - chr3.1:42292150-42292169 None:intergenic 35.0%
! GAGAGTACAAATAGTGCTTT+GGG + chr3.1:42291700-42291719 MS.gene064635:CDS 35.0%
! GAGTTTTACTGTTCCAAAGA+AGG + chr3.1:42290644-42290663 MS.gene064635:CDS 35.0%
! TGAGAGTACAAATAGTGCTT+TGG + chr3.1:42291699-42291718 MS.gene064635:CDS 35.0%
!! ACTAATGTCTTTTGGAGAGA+TGG + chr3.1:42291121-42291140 MS.gene064635:CDS 35.0%
!!! CAATTTAGTTTTGGAATCCC+AGG + chr3.1:42292305-42292324 MS.gene064635:CDS 35.0%
AACAAATGTCTTTGCTCAGG+AGG - chr3.1:42290818-42290837 None:intergenic 40.0%
AAGACTTCAGAATAGCGTTG+CGG - chr3.1:42292281-42292300 None:intergenic 40.0%
AATGAGTATCTTAATGGGGC+AGG + chr3.1:42291919-42291938 MS.gene064635:CDS 40.0%
ACCATCGAACATTGAATTGG+AGG - chr3.1:42292238-42292257 None:intergenic 40.0%
ACCTCCAATTCAATGTTCGA+TGG + chr3.1:42292234-42292253 MS.gene064635:CDS 40.0%
AGGAGACCTCATAAAGTCTA+TGG + chr3.1:42290868-42290887 MS.gene064635:CDS 40.0%
ATCAACTTCATGGGCACAAA+TGG + chr3.1:42291587-42291606 MS.gene064635:CDS 40.0%
ATGTTAGCAAGGAAGGAGTT+TGG + chr3.1:42290750-42290769 MS.gene064635:CDS 40.0%
ATTCATCATCTCATCCCAAG+TGG - chr3.1:42291563-42291582 None:intergenic 40.0%
CAAATTGCAAAGCTATGGTG+AGG + chr3.1:42290723-42290742 MS.gene064635:CDS 40.0%
CTACTGTTTATAACACGAGG+AGG - chr3.1:42291841-42291860 None:intergenic 40.0%
GGTGAGGTTTAATGTTAGCA+AGG + chr3.1:42290739-42290758 MS.gene064635:CDS 40.0%
GTCGGTGGATATAACAATCT+TGG + chr3.1:42290941-42290960 MS.gene064635:CDS 40.0%
TACAGATCAAGATCCAGCTA+CGG + chr3.1:42291372-42291391 MS.gene064635:intron 40.0%
TGTATGCAATTCGCAGCAAA+TGG + chr3.1:42291620-42291639 MS.gene064635:CDS 40.0%
TTCTTTGCAGTCATGCTTTG+CGG + chr3.1:42292094-42292113 MS.gene064635:CDS 40.0%
TTGAGAAGATGGTGAAAAGG+TGG + chr3.1:42291770-42291789 MS.gene064635:CDS 40.0%
TTGAGAGATCCCAAATGTGA+AGG - chr3.1:42291469-42291488 None:intergenic 40.0%
TTTGGACTCATCCACTTCTA+TGG + chr3.1:42292035-42292054 MS.gene064635:CDS 40.0%
! ATGATTTGTGCCCCATTTGT+TGG + chr3.1:42291220-42291239 MS.gene064635:intron 40.0%
! ATGTTCGATGGTGATGATTC+CGG + chr3.1:42292246-42292265 MS.gene064635:CDS 40.0%
! CTGAGCAAAGACATTTGTTG+CGG + chr3.1:42290819-42290838 MS.gene064635:CDS 40.0%
! GTTTGGTTGTGCTTTGTTGT+TGG + chr3.1:42291270-42291289 MS.gene064635:intron 40.0%
! TGATTTGTGCCCCATTTGTT+GGG + chr3.1:42291221-42291240 MS.gene064635:intron 40.0%
!!! TTGTGCTTTTTTGTCCTCCT+GGG - chr3.1:42292325-42292344 None:intergenic 40.0%
!!! TTTAGTTTTGGAATCCCAGG+AGG + chr3.1:42292308-42292327 MS.gene064635:CDS 40.0%
!!! TTTGTGCTTTTTTGTCCTCC+TGG - chr3.1:42292326-42292345 None:intergenic 40.0%
AACTCTACGACATGCATCCT+TGG + chr3.1:42291864-42291883 MS.gene064635:CDS 45.0%
AATTCGCAGCAAATGGAGCA+CGG + chr3.1:42291627-42291646 MS.gene064635:CDS 45.0%
ACAGATCAAGATCCAGCTAC+GGG + chr3.1:42291373-42291392 MS.gene064635:intron 45.0%
ACTGCAGCTAACCATAGAAG+TGG - chr3.1:42292049-42292068 None:intergenic 45.0%
ATCACATCGACCAATCTCCA+CGG - chr3.1:42291956-42291975 None:intergenic 45.0%
CAAGCACATGCCTTCAAAAC+AGG + chr3.1:42290557-42290576 MS.gene064635:CDS 45.0%
CACAGTCGATGACGTGTATT+TGG - chr3.1:42291421-42291440 None:intergenic 45.0%
CGCAACAAATGTCTTTGCTC+AGG - chr3.1:42290821-42290840 None:intergenic 45.0%
GAAAAGGTGGCGACAATTAG+AGG + chr3.1:42291783-42291802 MS.gene064635:CDS 45.0%
TTACAGTGTGCAGCTAGATC+AGG + chr3.1:42291087-42291106 MS.gene064635:CDS 45.0%
!! AGTGCTTTGGGAGATATTGC+AGG + chr3.1:42291712-42291731 MS.gene064635:CDS 45.0%
AGCGTTGCGGTAAAGAAGAC+CGG - chr3.1:42292268-42292287 None:intergenic 50.0%
GAGTATCTTAATGGGGCAGG+TGG + chr3.1:42291922-42291941 MS.gene064635:CDS 50.0%
TATTTAGGGGAAGAGGTCGG+TGG + chr3.1:42290926-42290945 MS.gene064635:CDS 50.0%
! CACGTCATCGACTGTGTTTG+TGG + chr3.1:42291425-42291444 MS.gene064635:intron 50.0%
CCAATTGCTTTGCCCGTAGC+TGG - chr3.1:42291388-42291407 None:intergenic 55.0%
CCAGCTACGGGCAAAGCAAT+TGG + chr3.1:42291385-42291404 MS.gene064635:intron 55.0%
!! GGAAGCACTTCCGTGGAGAT+TGG + chr3.1:42291943-42291962 MS.gene064635:CDS 55.0%
!! GGCAGGTGGAAGCACTTCCG+TGG + chr3.1:42291936-42291955 MS.gene064635:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 42290458 42292413 42290458 ID=MS.gene064635
chr3.1 mRNA 42290458 42292413 42290458 ID=MS.gene064635.t1;Parent=MS.gene064635
chr3.1 exon 42290458 42291142 42290458 ID=MS.gene064635.t1.exon1;Parent=MS.gene064635.t1
chr3.1 CDS 42290458 42291142 42290458 ID=cds.MS.gene064635.t1;Parent=MS.gene064635.t1
chr3.1 exon 42291533 42292413 42291533 ID=MS.gene064635.t1.exon2;Parent=MS.gene064635.t1
chr3.1 CDS 42291533 42292413 42291533 ID=cds.MS.gene064635.t1;Parent=MS.gene064635.t1
Gene Sequence

>MS.gene064635

ATGGAGATAAATGAATGTCAATCAGTTGAAATTGATGGATGCAAAGATATTTTTCTTGGTCAAGTTGTGAATAACAAAGATGAAGCTTATAATTTATATCAAGCACATGCCTTCAAAACAGGATTTAGTGTAAGAAAAGGGAGGGAGTTATATTATGATAATGAGAGAAAAATCACCCGTTTTAAAGAGTTTTACTGTTCCAAAGAAGGGTTTAAGAATAATGAATATGGAGGTGAAGTGGCTTATGAAAGAGCTGATTCAAGGACAAATTGCAAAGCTATGGTGAGGTTTAATGTTAGCAAGGAAGGAGTTTGGAAAGTTACAAAGTTTGTATTAGATCATAATCATCAACTTGTACCTCCTGAGCAAAGACATTTGTTGCGGTCCATGAGAAATATGTCAAATGTCAAAGGAGACCTCATAAAGTCTATGGTGAATTCTGGTATACGAGTTACAAATATTTGGAATTATTTAGGGGAAGAGGTCGGTGGATATAACAATCTTGGTATAACATTGAAAGATATGCATAATTATGTCTACACTGAAAAGTTGAAATTGATTGAAGCTAGGGATGCTCAATCTTTAGTAAATAACTTACAAAATAGACAAGCACAAGATCCTATGTTCTATTACAGTGTGCAGCTAGATCAGGAATCTCGTTTGACTAATGTCTTTTGGAGAGATGGTAAATCTAAAGTTGATTATGATTGCTTTGGGGATGTTGTGATATTTGACACTACTTATCGTACCAATAAGTATGACATGATTTGTGCCCCATTTGTTGGGATAAATCATCATTGGCAAAATGTCATGTTTGGTTGTGCTTTGTTGTTGGATGAAACTTCAATTTCTTTTAATTGGTTGTTTAAAGCATTTTTAGAGAGTATGGGAAACAAGCAACCAAAAACAATATTTACAGATCAAGATCCAGCTACGGGCAAAGCAATTGGAGAAGTAATGCCAAATACACGTCATCGACTGTGTTTGTGGCATATATCAAAAAATGCTCCTTCACATTTGGGATCTCTCAATTCTAATAAAAAGTTTCAAAGCTTATTTAATAAATGCATGATAGGTTGTGACTCAGAAGAAGAATTTCAAACCACTTGGGATGAGATGATGAATACATATCAACTTCATGGGCACAAATGGTTAAGAAGCATGTATGCAATTCGCAGCAAATGGAGCACGGCATATAGTAATCATGTATTTTCTGCTGGTATCAAATCTTCTCAAAGGAGTGAGAGTACAAATAGTGCTTTGGGAGATATTGCAGGAAAAACAACATGTCTCTCACAATTTTTAGTGGCATTTGAGAAGATGGTGAAAAGGTGGCGACAATTAGAGGTTGAGAACGAATTCAAAAATAGTCAGAGTGCGCCTCCTCGTGTTATAAACAGTAGTGAAACTCTACGACATGCATCCTTGGTATATACTCACAAAATCTTTACACTTTTTTTAAATGAGTATCTTAATGGGGCAGGTGGAAGCACTTCCGTGGAGATTGGTCGATGTGATAATGTGTCATATCATGAAGTTGTGTTGAACATCATCCCGAATAAAAACTATATCGTGACTTTGGACTCATCCACTTCTATGGTTAGCTGCAGTTGTCACAAGTTCGAATCTATGGGCATTCTTTGCAGTCATGCTTTGCGGATTTACAATATTAAAGGTATTTTAAAAATACCTGACCAATACATCTTAACAAGATGGTCAAAAAATGCAAGGTCTGTGATTTATGAGCATGTAAATAAGAGTTCAGAAGAAGATTCTACCTCCAATTCAATGTTCGATGGTGATGATTCCGGTCTTCTTTACCGCAACGCTATTCTGAAGTCTTTATACAATTTAGTTTTGGAATCCCAGGAGGACAAAAAAGCACAAAAATCATGTGGGAATTGCTTGATATTGGAGTTAAGAGGGTTCGAGAATGTGTCAGCAAACCTGACTTAA
Protein sequence

>MS.gene064635.t1

MEINECQSVEIDGCKDIFLGQVVNNKDEAYNLYQAHAFKTGFSVRKGRELYYDNERKITRFKEFYCSKEGFKNNEYGGEVAYERADSRTNCKAMVRFNVSKEGVWKVTKFVLDHNHQLVPPEQRHLLRSMRNMSNVKGDLIKSMVNSGIRVTNIWNYLGEEVGGYNNLGITLKDMHNYVYTEKLKLIEARDAQSLVNNLQNRQAQDPMFYYSVQLDQESRLTNVFWRDGCDSEEEFQTTWDEMMNTYQLHGHKWLRSMYAIRSKWSTAYSNHVFSAGIKSSQRSESTNSALGDIAGKTTCLSQFLVAFEKMVKRWRQLEVENEFKNSQSAPPRVINSSETLRHASLVYTHKIFTLFLNEYLNGAGGSTSVEIGRCDNVSYHEVVLNIIPNKNYIVTLDSSTSMVSCSCHKFESMGILCSHALRIYNIKGILKIPDQYILTRWSKNARSVIYEHVNKSSEEDSTSNSMFDGDDSGLLYRNAILKSLYNLVLESQEDKKAQKSCGNCLILELRGFENVSANLT