Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064697.t1 | XP_013462164.1 | 96.9 | 448 | 9 | 2 | 1 | 448 | 1 | 443 | 4.20E-228 | 800.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064697.t1 | Q1PFD1 | 60.0 | 265 | 97 | 5 | 173 | 431 | 19 | 280 | 1.0e-81 | 305.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064697.t1 | A0A072V2D2 | 96.9 | 448 | 9 | 2 | 1 | 448 | 1 | 443 | 3.0e-228 | 800.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064697.t1 | TF | HB-BELL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064697.t1 | MTR_3g112290 | 96.875 | 448 | 9 | 3 | 1 | 448 | 1 | 443 | 0.0 | 887 |
| MS.gene064697.t1 | MTR_1g023050 | 50.903 | 277 | 105 | 7 | 173 | 432 | 173 | 435 | 1.95e-78 | 256 |
| MS.gene064697.t1 | MTR_3g112300 | 45.645 | 287 | 122 | 6 | 163 | 432 | 155 | 424 | 1.39e-71 | 235 |
| MS.gene064697.t1 | MTR_3g112300 | 44.898 | 294 | 128 | 6 | 163 | 439 | 155 | 431 | 6.39e-71 | 235 |
| MS.gene064697.t1 | MTR_4g051532 | 46.290 | 283 | 134 | 6 | 170 | 442 | 217 | 491 | 7.85e-67 | 227 |
| MS.gene064697.t1 | MTR_7g106320 | 46.503 | 286 | 120 | 6 | 168 | 432 | 169 | 442 | 2.91e-65 | 221 |
| MS.gene064697.t1 | MTR_5g018860 | 43.000 | 300 | 150 | 9 | 136 | 427 | 312 | 598 | 3.24e-65 | 223 |
| MS.gene064697.t1 | MTR_1g057790 | 45.817 | 251 | 128 | 4 | 169 | 414 | 160 | 407 | 1.00e-64 | 220 |
| MS.gene064697.t1 | MTR_8g078480 | 44.322 | 273 | 135 | 6 | 170 | 431 | 388 | 654 | 3.82e-63 | 219 |
| MS.gene064697.t1 | MTR_4g019450 | 41.328 | 271 | 128 | 5 | 167 | 431 | 193 | 438 | 1.93e-60 | 207 |
| MS.gene064697.t1 | MTR_7g065050 | 41.948 | 267 | 136 | 4 | 167 | 431 | 134 | 383 | 1.65e-58 | 200 |
| MS.gene064697.t1 | MTR_8g098815 | 54.645 | 183 | 73 | 5 | 239 | 416 | 255 | 432 | 1.19e-57 | 200 |
| MS.gene064697.t1 | MTR_2g095050 | 40.132 | 304 | 139 | 8 | 159 | 432 | 230 | 520 | 2.06e-56 | 197 |
| MS.gene064697.t1 | MTR_3g112300 | 41.961 | 255 | 114 | 6 | 163 | 400 | 155 | 392 | 2.76e-51 | 178 |
| MS.gene064697.t1 | MTR_1g016490 | 36.466 | 266 | 147 | 7 | 167 | 422 | 240 | 493 | 3.70e-40 | 151 |
| MS.gene064697.t1 | MTR_3g112300 | 38.889 | 234 | 109 | 6 | 163 | 379 | 155 | 371 | 8.91e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064697.t1 | AT1G75430 | 60.755 | 265 | 95 | 6 | 173 | 431 | 19 | 280 | 2.62e-106 | 317 |
| MS.gene064697.t1 | AT1G75410 | 49.632 | 272 | 125 | 4 | 162 | 429 | 159 | 422 | 3.50e-78 | 252 |
| MS.gene064697.t1 | AT1G75410 | 49.632 | 272 | 125 | 4 | 162 | 429 | 159 | 422 | 3.50e-78 | 252 |
| MS.gene064697.t1 | AT2G16400 | 47.405 | 289 | 128 | 7 | 148 | 433 | 98 | 365 | 2.45e-77 | 249 |
| MS.gene064697.t1 | AT1G19700 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 7.56e-77 | 249 |
| MS.gene064697.t1 | AT1G19700 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 7.56e-77 | 249 |
| MS.gene064697.t1 | AT1G19700 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 7.56e-77 | 249 |
| MS.gene064697.t1 | AT1G19700 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 7.56e-77 | 249 |
| MS.gene064697.t1 | AT1G19700 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 7.56e-77 | 249 |
| MS.gene064697.t1 | AT4G34610 | 48.540 | 274 | 118 | 7 | 170 | 437 | 140 | 396 | 8.43e-71 | 233 |
| MS.gene064697.t1 | AT4G34610 | 48.540 | 274 | 118 | 7 | 170 | 437 | 140 | 396 | 8.43e-71 | 233 |
| MS.gene064697.t1 | AT4G34610 | 48.540 | 274 | 118 | 7 | 170 | 437 | 140 | 396 | 8.43e-71 | 233 |
| MS.gene064697.t1 | AT4G34610 | 48.540 | 274 | 118 | 7 | 170 | 437 | 140 | 396 | 8.43e-71 | 233 |
| MS.gene064697.t1 | AT1G75430 | 54.930 | 213 | 87 | 6 | 173 | 379 | 19 | 228 | 7.81e-68 | 218 |
| MS.gene064697.t1 | AT4G36870 | 46.269 | 268 | 117 | 10 | 170 | 422 | 312 | 567 | 1.66e-61 | 213 |
| MS.gene064697.t1 | AT4G36870 | 46.269 | 268 | 117 | 10 | 170 | 422 | 312 | 567 | 1.66e-61 | 213 |
| MS.gene064697.t1 | AT2G35940 | 41.935 | 279 | 128 | 6 | 163 | 414 | 175 | 446 | 2.68e-58 | 203 |
| MS.gene064697.t1 | AT2G35940 | 41.935 | 279 | 128 | 6 | 163 | 414 | 175 | 446 | 2.68e-58 | 203 |
| MS.gene064697.t1 | AT2G35940 | 41.935 | 279 | 128 | 6 | 163 | 414 | 175 | 446 | 2.68e-58 | 203 |
| MS.gene064697.t1 | AT2G27220 | 43.373 | 249 | 108 | 4 | 176 | 423 | 82 | 298 | 7.92e-58 | 196 |
| MS.gene064697.t1 | AT2G27220 | 43.373 | 249 | 108 | 4 | 176 | 423 | 82 | 298 | 7.92e-58 | 196 |
| MS.gene064697.t1 | AT2G23760 | 44.610 | 269 | 119 | 8 | 170 | 421 | 237 | 492 | 1.61e-57 | 200 |
| MS.gene064697.t1 | AT2G23760 | 44.610 | 269 | 119 | 8 | 170 | 421 | 237 | 492 | 1.61e-57 | 200 |
| MS.gene064697.t1 | AT2G23760 | 44.610 | 269 | 119 | 8 | 170 | 421 | 237 | 492 | 1.61e-57 | 200 |
| MS.gene064697.t1 | AT5G02030 | 37.705 | 305 | 173 | 3 | 125 | 423 | 125 | 418 | 9.61e-57 | 197 |
| MS.gene064697.t1 | AT1G75410 | 44.856 | 243 | 122 | 4 | 162 | 400 | 159 | 393 | 7.46e-56 | 191 |
| MS.gene064697.t1 | AT2G27220 | 42.586 | 263 | 108 | 8 | 176 | 423 | 82 | 316 | 1.23e-55 | 191 |
| MS.gene064697.t1 | AT2G27990 | 41.154 | 260 | 126 | 4 | 167 | 423 | 259 | 494 | 4.26e-54 | 190 |
| MS.gene064697.t1 | AT5G41410 | 40.702 | 285 | 141 | 5 | 171 | 433 | 194 | 472 | 1.81e-51 | 183 |
| MS.gene064697.t1 | AT2G23760 | 37.383 | 321 | 119 | 9 | 170 | 421 | 237 | 544 | 6.73e-48 | 174 |
| MS.gene064697.t1 | AT4G36870 | 42.915 | 247 | 114 | 10 | 170 | 401 | 312 | 546 | 2.20e-45 | 166 |
| MS.gene064697.t1 | AT4G36870 | 42.449 | 245 | 114 | 10 | 170 | 399 | 312 | 544 | 3.56e-44 | 162 |
| MS.gene064697.t1 | AT4G32980 | 36.071 | 280 | 149 | 6 | 152 | 422 | 183 | 441 | 3.82e-40 | 150 |
| MS.gene064697.t1 | AT4G32980 | 36.071 | 280 | 149 | 6 | 152 | 422 | 183 | 441 | 3.82e-40 | 150 |
| MS.gene064697.t1 | AT2G27990 | 34.722 | 216 | 114 | 4 | 167 | 379 | 259 | 450 | 2.95e-28 | 116 |
Find 79 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATTCATGGACATTTAT+TGG | 0.202908 | 3.4:-97249321 | MS.gene064697:CDS |
| GATCATAAGACCTTGATTTA+AGG | 0.203423 | 3.4:+97249715 | None:intergenic |
| CGTTCTACTTCTACTTCTTA+TGG | 0.209074 | 3.4:-97249530 | MS.gene064697:CDS |
| TGAGAAAAGAAAACTGTTTC+AGG | 0.210768 | 3.4:-97248460 | MS.gene064697:CDS |
| AGCATTTATTTGGGACATTA+TGG | 0.234641 | 3.4:+97248482 | None:intergenic |
| AGAATTGCTACAGATGTTTC+AGG | 0.303192 | 3.4:+97248300 | None:intergenic |
| CAAGGTCTATCCCTTTCTTT+AGG | 0.320317 | 3.4:-97249773 | MS.gene064697:CDS |
| ATACTACTTCTTCCATTTGA+TGG | 0.326054 | 3.4:+97248601 | None:intergenic |
| TTGTACATTTCTTCTATCAT+TGG | 0.327367 | 3.4:+97247833 | None:intergenic |
| TGCAAAGCTCATTTCATTGT+TGG | 0.330686 | 3.4:-97249270 | MS.gene064697:CDS |
| CACCACCTAGTAGTAGTTCT+TGG | 0.332157 | 3.4:+97249954 | None:intergenic |
| TTCAAAACCAACGACAAGTT+TGG | 0.336930 | 3.4:-97248341 | MS.gene064697:CDS |
| GAAGTGACTGTACTGGTTTA+AGG | 0.338310 | 3.4:+97249468 | None:intergenic |
| TTACACTGCTTTGGCACTTC+AGG | 0.345280 | 3.4:-97248538 | MS.gene064697:CDS |
| AGATGTCACTGTGGAGGATT+AGG | 0.348390 | 3.4:-97247747 | None:intergenic |
| AGCTGGCGGGTTGGAGTCTT+CGG | 0.349210 | 3.4:+97247790 | None:intergenic |
| ATTAACTTCTCAGAGTCATT+AGG | 0.369658 | 3.4:+97248144 | None:intergenic |
| GAAATGTACAAAGAAGAGTT+TGG | 0.376842 | 3.4:-97247821 | MS.gene064697:CDS |
| GTTTCAGGTAACCCTCTAAT+AGG | 0.383713 | 3.4:+97248315 | None:intergenic |
| CTTGAAGATCTTGTTGATGT+TGG | 0.386052 | 3.4:-97249446 | MS.gene064697:CDS |
| TTAATCCTGGCTTCCCAAAC+AGG | 0.402326 | 3.4:-97248126 | MS.gene064697:CDS |
| GAGTCACACAAGACATTTGA+TGG | 0.404453 | 3.4:-97249837 | MS.gene064697:CDS |
| TGTTGGTTCAGGTGTCAAAT+TGG | 0.407480 | 3.4:-97247886 | MS.gene064697:intron |
| TTTGAAATGATAGCAGGTTT+GGG | 0.408450 | 3.4:-97248573 | MS.gene064697:CDS |
| TGCAAAGTGTTACACTGCTT+TGG | 0.409703 | 3.4:-97248547 | MS.gene064697:CDS |
| AAAGCAGAGTTGAGGATTCA+TGG | 0.417721 | 3.4:-97249332 | MS.gene064697:CDS |
| TCTTATGGAAGTGAGAGTTT+TGG | 0.428359 | 3.4:-97249515 | MS.gene064697:CDS |
| TTGTTTCATGGGAGTAGAAC+AGG | 0.428923 | 3.4:-97249380 | MS.gene064697:CDS |
| CTGTAGCAATTCTTCGTGCT+TGG | 0.430609 | 3.4:-97248290 | MS.gene064697:CDS |
| TTCAATGGTGGAAATGGAGG+TGG | 0.430738 | 3.4:-97249605 | MS.gene064697:CDS |
| TATGCTGAGAAGTTGTTTCA+TGG | 0.434153 | 3.4:-97249392 | MS.gene064697:CDS |
| GAATCCTCAACTCTGCTTTG+AGG | 0.436275 | 3.4:+97249336 | None:intergenic |
| TGACCAGGCATGAAGTAACT+TGG | 0.451078 | 3.4:+97249689 | None:intergenic |
| CAAGTTTGGAGACCTATTAG+AGG | 0.455849 | 3.4:-97248327 | MS.gene064697:CDS |
| GGGATAGACCTTGTTGTGTC+TGG | 0.465614 | 3.4:+97249783 | None:intergenic |
| TTAAACCTGTTTGGGAAGCC+AGG | 0.480873 | 3.4:+97248121 | None:intergenic |
| CTTGACATAAAATTGTTAGC+TGG | 0.489551 | 3.4:+97247773 | None:intergenic |
| TGACTCTGAGAAGTTAATCC+TGG | 0.499019 | 3.4:-97248139 | MS.gene064697:CDS |
| TTTGAATGACACCAAGTTGT+TGG | 0.503416 | 3.4:+97248358 | None:intergenic |
| GCTCATTTCATTGTTGGATG+AGG | 0.504055 | 3.4:-97249264 | MS.gene064697:intron |
| CTTGTTAGATTCTCCACCAC+AGG | 0.504734 | 3.4:+97249638 | None:intergenic |
| TGAGAAGTACTACCATCAAA+TGG | 0.506912 | 3.4:-97248613 | MS.gene064697:CDS |
| TCCACCACAGGTTGATTACA+AGG | 0.508130 | 3.4:+97249650 | None:intergenic |
| GAAGATCTTGTTGATGTTGG+TGG | 0.515827 | 3.4:-97249443 | MS.gene064697:CDS |
| AACCCAAGTTACTTCATGCC+TGG | 0.516099 | 3.4:-97249692 | MS.gene064697:CDS |
| TTAATGCAAGGGTACGGCTA+TGG | 0.523142 | 3.4:-97247859 | MS.gene064697:CDS |
| CAAATTGGTTCATTAATGCA+AGG | 0.528439 | 3.4:-97247871 | MS.gene064697:CDS |
| CATGTGAGAGCCTAAAGAAA+GGG | 0.530908 | 3.4:+97249763 | None:intergenic |
| ATGCTGAGAAGTTGTTTCAT+GGG | 0.532525 | 3.4:-97249391 | MS.gene064697:CDS |
| TGGCACTTCAGGCAATGTCT+AGG | 0.533896 | 3.4:-97248527 | MS.gene064697:CDS |
| TCTTCAAGAAGTGACTGTAC+TGG | 0.534996 | 3.4:+97249461 | None:intergenic |
| ACATAAAATTGTTAGCTGGC+GGG | 0.535342 | 3.4:+97247777 | None:intergenic |
| AGAAACCGTTCCTTAAATCA+AGG | 0.535526 | 3.4:-97249725 | MS.gene064697:CDS |
| TAGGTCTCCAAACTTGTCGT+TGG | 0.537318 | 3.4:+97248334 | None:intergenic |
| GATGTACCTAAAATTAATAG+TGG | 0.538946 | 3.4:-97248438 | MS.gene064697:CDS |
| GCATGTGAGAGCCTAAAGAA+AGG | 0.546878 | 3.4:+97249762 | None:intergenic |
| TAAGACCTTGATTTAAGGAA+CGG | 0.549373 | 3.4:+97249720 | None:intergenic |
| AGACATTTGATGGATCTACT+TGG | 0.551807 | 3.4:-97249827 | MS.gene064697:CDS |
| AAAATTGTTAGCTGGCGGGT+TGG | 0.557706 | 3.4:+97247781 | None:intergenic |
| AGAATGTCTCTCCAACAACT+TGG | 0.557966 | 3.4:-97248369 | MS.gene064697:CDS |
| GACCAGGCATGAAGTAACTT+GGG | 0.566873 | 3.4:+97249690 | None:intergenic |
| GAGAACCAAGAACTACTACT+AGG | 0.567546 | 3.4:-97249959 | MS.gene064697:CDS |
| GGTTCATTAATGCAAGGGTA+CGG | 0.572871 | 3.4:-97247865 | MS.gene064697:CDS |
| AAATTGGTTCATTAATGCAA+GGG | 0.576729 | 3.4:-97247870 | MS.gene064697:CDS |
| GACATAAAATTGTTAGCTGG+CGG | 0.577181 | 3.4:+97247776 | None:intergenic |
| AAGTTTGGAGACCTATTAGA+GGG | 0.581283 | 3.4:-97248326 | MS.gene064697:CDS |
| TCACGTGTCTGATCTTGACC+AGG | 0.591778 | 3.4:+97249674 | None:intergenic |
| CAACTCTGCTTTGAGGTCAG+AGG | 0.594657 | 3.4:+97249343 | None:intergenic |
| CATAAGAAGTAGAAGTAGAA+CGG | 0.599560 | 3.4:+97249531 | None:intergenic |
| AATGCATATCATGAATCACT+TGG | 0.609154 | 3.4:-97249902 | MS.gene064697:CDS |
| AACAATATTGGACTAACACA+AGG | 0.620037 | 3.4:-97249869 | MS.gene064697:CDS |
| GCCTTGTAATCAACCTGTGG+TGG | 0.623528 | 3.4:-97249651 | MS.gene064697:CDS |
| AATAATCACCAGACACAACA+AGG | 0.630483 | 3.4:-97249791 | MS.gene064697:CDS |
| AAGGGAAGATGTCACTGTGG+AGG | 0.641601 | 3.4:-97247753 | MS.gene064697:CDS |
| CAAGAACTACTACTAGGTGG+TGG | 0.646214 | 3.4:-97249953 | MS.gene064697:CDS |
| CTGACCTCAAAGCAGAGTTG+AGG | 0.668038 | 3.4:-97249340 | MS.gene064697:CDS |
| AACCAAGAACTACTACTAGG+TGG | 0.711092 | 3.4:-97249956 | MS.gene064697:CDS |
| TGAGCCTTGTAATCAACCTG+TGG | 0.732645 | 3.4:-97249654 | MS.gene064697:CDS |
| GTCAAGGGAAGATGTCACTG+TGG | 0.757361 | 3.4:-97247756 | MS.gene064697:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATGTGAAAAAAAT+TGG | + | chr3.4:97249679-97249698 | None:intergenic | 15.0% |
| !!! | AAACAAAAATCAAATTGTTT+TGG | - | chr3.4:97248637-97248656 | MS.gene064697:intron | 15.0% |
| !!! | TTTTTCACATTTTCTTTTAT+GGG | - | chr3.4:97249682-97249701 | MS.gene064697:CDS | 15.0% |
| !!! | TTTTTTCACATTTTCTTTTA+TGG | - | chr3.4:97249681-97249700 | MS.gene064697:CDS | 15.0% |
| !! | AAAAAGAAAAACAAATTGAG+AGG | - | chr3.4:97248868-97248887 | MS.gene064697:intron | 20.0% |
| !! | ATATAAGTGTTAGATATACT+TGG | + | chr3.4:97249032-97249051 | None:intergenic | 20.0% |
| !! | ATTAATGAAATGCTAATTTG+AGG | - | chr3.4:97249558-97249577 | MS.gene064697:CDS | 20.0% |
| !! | TATAAGTGTTAGATATACTT+GGG | + | chr3.4:97249031-97249050 | None:intergenic | 20.0% |
| !!! | ACAAGTGATTATTTTTTCAA+TGG | - | chr3.4:97248123-97248142 | MS.gene064697:CDS | 20.0% |
| !!! | AGAATTTTGATATAAGCTTA+CGG | + | chr3.4:97249500-97249519 | None:intergenic | 20.0% |
| !!! | TTTTTCGAAGTTATTTATGA+TGG | - | chr3.4:97249816-97249835 | MS.gene064697:CDS | 20.0% |
| ! | AAGCTATCTTAGAGAATTTA+TGG | - | chr3.4:97248723-97248742 | MS.gene064697:intron | 25.0% |
| ! | AAGTTCATTAGAATAAGTGT+AGG | - | chr3.4:97248912-97248931 | MS.gene064697:intron | 25.0% |
| ! | AGCTATCTTAGAGAATTTAT+GGG | - | chr3.4:97248724-97248743 | MS.gene064697:intron | 25.0% |
| ! | GATGTACCTAAAATTAATAG+TGG | - | chr3.4:97249305-97249324 | MS.gene064697:CDS | 25.0% |
| ! | TAGCATTTCATTAATAAGAC+AGG | + | chr3.4:97249553-97249572 | None:intergenic | 25.0% |
| ! | TATGTTAATGTATTGAGTGT+TGG | - | chr3.4:97249840-97249859 | MS.gene064697:CDS | 25.0% |
| ! | TTGTACATTTCTTCTATCAT+TGG | + | chr3.4:97249913-97249932 | None:intergenic | 25.0% |
| !! | AAAGTTGGTTAGTAATTAGT+TGG | + | chr3.4:97248988-97249007 | None:intergenic | 25.0% |
| !! | AAATTGGTTCATTAATGCAA+GGG | - | chr3.4:97249873-97249892 | MS.gene064697:CDS | 25.0% |
| !! | AAGTTGGTTAGTAATTAGTT+GGG | + | chr3.4:97248987-97249006 | None:intergenic | 25.0% |
| !! | AGCTAACAATTTTATGTCAA+GGG | - | chr3.4:97249972-97249991 | MS.gene064697:CDS | 25.0% |
| !! | GACAATCCACTATTAATTTT+AGG | + | chr3.4:97249314-97249333 | None:intergenic | 25.0% |
| !! | GGAACATTTTCTAACAATAT+TGG | - | chr3.4:97247862-97247881 | MS.gene064697:CDS | 25.0% |
| !! | TCTTTTCTCAGCATTTATTT+GGG | + | chr3.4:97249273-97249292 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAGCATTTATT+TGG | + | chr3.4:97249274-97249293 | None:intergenic | 25.0% |
| !!! | AGTGATTATTTTTTCAATGG+TGG | - | chr3.4:97248126-97248145 | MS.gene064697:CDS | 25.0% |
| !!! | ATTTGTTGTGCTTAATTTTC+AGG | - | chr3.4:97249094-97249113 | MS.gene064697:intron | 25.0% |
| !!! | GTTCTCAAATTGATTTTGAT+GGG | + | chr3.4:97247770-97247789 | None:intergenic | 25.0% |
| !!! | TATTTTTTCAATGGTGGAAA+TGG | - | chr3.4:97248132-97248151 | MS.gene064697:CDS | 25.0% |
| AACAATATTGGACTAACACA+AGG | - | chr3.4:97247874-97247893 | MS.gene064697:CDS | 30.0% | |
| AATAATAAGCACTTGTGAGA+CGG | + | chr3.4:97248826-97248845 | None:intergenic | 30.0% | |
| AATGCATATCATGAATCACT+TGG | - | chr3.4:97247841-97247860 | MS.gene064697:CDS | 30.0% | |
| ATACTACTTCTTCCATTTGA+TGG | + | chr3.4:97249145-97249164 | None:intergenic | 30.0% | |
| ATTAACTTCTCAGAGTCATT+AGG | + | chr3.4:97249602-97249621 | None:intergenic | 30.0% | |
| CATAAGAAGTAGAAGTAGAA+CGG | + | chr3.4:97248215-97248234 | None:intergenic | 30.0% | |
| CTTGACATAAAATTGTTAGC+TGG | + | chr3.4:97249973-97249992 | None:intergenic | 30.0% | |
| GAAATGTACAAAGAAGAGTT+TGG | - | chr3.4:97249922-97249941 | MS.gene064697:CDS | 30.0% | |
| GATCATAAGACCTTGATTTA+AGG | + | chr3.4:97248031-97248050 | None:intergenic | 30.0% | |
| GTGCTTATTATTGAGAAACA+TGG | - | chr3.4:97248834-97248853 | MS.gene064697:intron | 30.0% | |
| TAAGACCTTGATTTAAGGAA+CGG | + | chr3.4:97248026-97248045 | None:intergenic | 30.0% | |
| TGAGAAAAGAAAACTGTTTC+AGG | - | chr3.4:97249283-97249302 | MS.gene064697:CDS | 30.0% | |
| TTATGGGTAGAAATTGAGTT+AGG | - | chr3.4:97249698-97249717 | MS.gene064697:CDS | 30.0% | |
| ! | AGCATTTATTTGGGACATTA+TGG | + | chr3.4:97249264-97249283 | None:intergenic | 30.0% |
| ! | CAAATTGGTTCATTAATGCA+AGG | - | chr3.4:97249872-97249891 | MS.gene064697:CDS | 30.0% |
| ! | CAGCTAACAATTTTATGTCA+AGG | - | chr3.4:97249971-97249990 | MS.gene064697:CDS | 30.0% |
| ! | GGGAAAATGTCAAATAGTTT+TGG | - | chr3.4:97248744-97248763 | MS.gene064697:intron | 30.0% |
| ! | TTTGAAATGATAGCAGGTTT+GGG | - | chr3.4:97249170-97249189 | MS.gene064697:intron | 30.0% |
| !! | AAATTGATTTTGATGGGTCA+TGG | + | chr3.4:97247764-97247783 | None:intergenic | 30.0% |
| !! | GGTTCTCAAATTGATTTTGA+TGG | + | chr3.4:97247771-97247790 | None:intergenic | 30.0% |
| !! | GTTAAAGGTACTTACAAAGT+TGG | + | chr3.4:97249003-97249022 | None:intergenic | 30.0% |
| !! | TATACTTGGGAGTTTGTTAA+AGG | + | chr3.4:97249018-97249037 | None:intergenic | 30.0% |
| !!! | AGAGTTTTGGTTCTGTTATT+GGG | - | chr3.4:97248241-97248260 | MS.gene064697:intron | 30.0% |
| !!! | GTTTTTGGTTAAACCTGTTT+GGG | + | chr3.4:97249633-97249652 | None:intergenic | 30.0% |
| !!! | TCATCTTTTGAAATGATAGC+AGG | - | chr3.4:97249164-97249183 | MS.gene064697:intron | 30.0% |
| !!! | TTTTGAAATGATAGCAGGTT+TGG | - | chr3.4:97249169-97249188 | MS.gene064697:intron | 30.0% |
| AAGTTTGGAGACCTATTAGA+GGG | - | chr3.4:97249417-97249436 | MS.gene064697:CDS | 35.0% | |
| AATAATCACCAGACACAACA+AGG | - | chr3.4:97247952-97247971 | MS.gene064697:intron | 35.0% | |
| ACATAAAATTGTTAGCTGGC+GGG | + | chr3.4:97249969-97249988 | None:intergenic | 35.0% | |
| AGAAACCGTTCCTTAAATCA+AGG | - | chr3.4:97248018-97248037 | MS.gene064697:intron | 35.0% | |
| AGAATTGCTACAGATGTTTC+AGG | + | chr3.4:97249446-97249465 | None:intergenic | 35.0% | |
| ATTTCATTGTTGGATGAGGT+TGG | - | chr3.4:97248483-97248502 | MS.gene064697:CDS | 35.0% | |
| CACTTTAGTCTCTACTTACT+TGG | + | chr3.4:97249655-97249674 | None:intergenic | 35.0% | |
| CGTTCTACTTCTACTTCTTA+TGG | - | chr3.4:97248213-97248232 | MS.gene064697:intron | 35.0% | |
| CTTGAAGATCTTGTTGATGT+TGG | - | chr3.4:97248297-97248316 | MS.gene064697:CDS | 35.0% | |
| GACATAAAATTGTTAGCTGG+CGG | + | chr3.4:97249970-97249989 | None:intergenic | 35.0% | |
| GAGGATTCATGGACATTTAT+TGG | - | chr3.4:97248422-97248441 | MS.gene064697:CDS | 35.0% | |
| TGCAAAGCTCATTTCATTGT+TGG | - | chr3.4:97248473-97248492 | MS.gene064697:CDS | 35.0% | |
| TTCAAAACCAACGACAAGTT+TGG | - | chr3.4:97249402-97249421 | MS.gene064697:CDS | 35.0% | |
| TTTGAATGACACCAAGTTGT+TGG | + | chr3.4:97249388-97249407 | None:intergenic | 35.0% | |
| ! | AGACATTTGATGGATCTACT+TGG | - | chr3.4:97247916-97247935 | MS.gene064697:intron | 35.0% |
| ! | ATGCTGAGAAGTTGTTTCAT+GGG | - | chr3.4:97248352-97248371 | MS.gene064697:CDS | 35.0% |
| ! | TATGCTGAGAAGTTGTTTCA+TGG | - | chr3.4:97248351-97248370 | MS.gene064697:CDS | 35.0% |
| ! | TCTTATGGAAGTGAGAGTTT+TGG | - | chr3.4:97248228-97248247 | MS.gene064697:intron | 35.0% |
| !! | AATGTATTGAGTGTTGGTTC+AGG | - | chr3.4:97249846-97249865 | MS.gene064697:CDS | 35.0% |
| !! | GTCTCTACTTACTTGGTTTT+TGG | + | chr3.4:97249648-97249667 | None:intergenic | 35.0% |
| !! | TGAGAAGTACTACCATCAAA+TGG | - | chr3.4:97249130-97249149 | MS.gene064697:intron | 35.0% |
| !! | TTTTTCAATGGTGGAAATGG+AGG | - | chr3.4:97248135-97248154 | MS.gene064697:CDS | 35.0% |
| !!! | GAGAGTTTTGGTTCTGTTAT+TGG | - | chr3.4:97248240-97248259 | MS.gene064697:intron | 35.0% |
| !!! | GCTTTGCAATTTTGACTTGA+TGG | + | chr3.4:97248461-97248480 | None:intergenic | 35.0% |
| !!! | GGTTTTTGGTTAAACCTGTT+TGG | + | chr3.4:97249634-97249653 | None:intergenic | 35.0% |
| !!! | GTGCTTAATTTTCAGGTTGA+GGG | - | chr3.4:97249101-97249120 | MS.gene064697:intron | 35.0% |
| !!! | TGTGCTTAATTTTCAGGTTG+AGG | - | chr3.4:97249100-97249119 | MS.gene064697:intron | 35.0% |
| AAAGCAGAGTTGAGGATTCA+TGG | - | chr3.4:97248411-97248430 | MS.gene064697:CDS | 40.0% | |
| AACCAAGAACTACTACTAGG+TGG | - | chr3.4:97247787-97247806 | MS.gene064697:CDS | 40.0% | |
| AGAATGTCTCTCCAACAACT+TGG | - | chr3.4:97249374-97249393 | MS.gene064697:CDS | 40.0% | |
| CAAGGTCTATCCCTTTCTTT+AGG | - | chr3.4:97247970-97247989 | MS.gene064697:intron | 40.0% | |
| CAAGTTTGGAGACCTATTAG+AGG | - | chr3.4:97249416-97249435 | MS.gene064697:CDS | 40.0% | |
| CATGTGAGAGCCTAAAGAAA+GGG | + | chr3.4:97247983-97248002 | None:intergenic | 40.0% | |
| GAAGATCTTGTTGATGTTGG+TGG | - | chr3.4:97248300-97248319 | MS.gene064697:CDS | 40.0% | |
| GAGAACCAAGAACTACTACT+AGG | - | chr3.4:97247784-97247803 | MS.gene064697:CDS | 40.0% | |
| GAGTCACACAAGACATTTGA+TGG | - | chr3.4:97247906-97247925 | MS.gene064697:intron | 40.0% | |
| GCTCATTTCATTGTTGGATG+AGG | - | chr3.4:97248479-97248498 | MS.gene064697:CDS | 40.0% | |
| GGTTCATTAATGCAAGGGTA+CGG | - | chr3.4:97249878-97249897 | MS.gene064697:CDS | 40.0% | |
| TCTTCAAGAAGTGACTGTAC+TGG | + | chr3.4:97248285-97248304 | None:intergenic | 40.0% | |
| TTGTTTCATGGGAGTAGAAC+AGG | - | chr3.4:97248363-97248382 | MS.gene064697:CDS | 40.0% | |
| ! | GTTTCAGGTAACCCTCTAAT+AGG | + | chr3.4:97249431-97249450 | None:intergenic | 40.0% |
| ! | TGACTCTGAGAAGTTAATCC+TGG | - | chr3.4:97249604-97249623 | MS.gene064697:CDS | 40.0% |
| ! | TGCAAAGTGTTACACTGCTT+TGG | - | chr3.4:97249196-97249215 | MS.gene064697:intron | 40.0% |
| !! | GAAGTGACTGTACTGGTTTA+AGG | + | chr3.4:97248278-97248297 | None:intergenic | 40.0% |
| !! | TGTTGGTTCAGGTGTCAAAT+TGG | - | chr3.4:97249857-97249876 | MS.gene064697:CDS | 40.0% |
| AACCCAAGTTACTTCATGCC+TGG | - | chr3.4:97248051-97248070 | MS.gene064697:intron | 45.0% | |
| CAAGAACTACTACTAGGTGG+TGG | - | chr3.4:97247790-97247809 | MS.gene064697:CDS | 45.0% | |
| CACCACCTAGTAGTAGTTCT+TGG | + | chr3.4:97247792-97247811 | None:intergenic | 45.0% | |
| CTGTAGCAATTCTTCGTGCT+TGG | - | chr3.4:97249453-97249472 | MS.gene064697:CDS | 45.0% | |
| CTTGTTAGATTCTCCACCAC+AGG | + | chr3.4:97248108-97248127 | None:intergenic | 45.0% | |
| GAATCCTCAACTCTGCTTTG+AGG | + | chr3.4:97248410-97248429 | None:intergenic | 45.0% | |
| GACCAGGCATGAAGTAACTT+GGG | + | chr3.4:97248056-97248075 | None:intergenic | 45.0% | |
| GCATGTGAGAGCCTAAAGAA+AGG | + | chr3.4:97247984-97248003 | None:intergenic | 45.0% | |
| TAGGTCTCCAAACTTGTCGT+TGG | + | chr3.4:97249412-97249431 | None:intergenic | 45.0% | |
| TGACCAGGCATGAAGTAACT+TGG | + | chr3.4:97248057-97248076 | None:intergenic | 45.0% | |
| TTAAACCTGTTTGGGAAGCC+AGG | + | chr3.4:97249625-97249644 | None:intergenic | 45.0% | |
| TTAATCCTGGCTTCCCAAAC+AGG | - | chr3.4:97249617-97249636 | MS.gene064697:CDS | 45.0% | |
| TTACACTGCTTTGGCACTTC+AGG | - | chr3.4:97249205-97249224 | MS.gene064697:intron | 45.0% | |
| ! | AAAATTGTTAGCTGGCGGGT+TGG | + | chr3.4:97249965-97249984 | None:intergenic | 45.0% |
| ! | AAGCACTTGTGAGACGGATT+AGG | + | chr3.4:97248820-97248839 | None:intergenic | 45.0% |
| ! | TGAGCCTTGTAATCAACCTG+TGG | - | chr3.4:97248089-97248108 | MS.gene064697:intron | 45.0% |
| ! | TTAATGCAAGGGTACGGCTA+TGG | - | chr3.4:97249884-97249903 | MS.gene064697:CDS | 45.0% |
| ! | TTCAATGGTGGAAATGGAGG+TGG | - | chr3.4:97248138-97248157 | MS.gene064697:CDS | 45.0% |
| !! | TCCACCACAGGTTGATTACA+AGG | + | chr3.4:97248096-97248115 | None:intergenic | 45.0% |
| !! | TGCGCATTGATTGATGTCGA+TGG | - | chr3.4:97249750-97249769 | MS.gene064697:CDS | 45.0% |
| AAGGGAAGATGTCACTGTGG+AGG | - | chr3.4:97249990-97250009 | MS.gene064697:CDS | 50.0% | |
| CTGACCTCAAAGCAGAGTTG+AGG | - | chr3.4:97248403-97248422 | MS.gene064697:CDS | 50.0% | |
| GCCTTGTAATCAACCTGTGG+TGG | - | chr3.4:97248092-97248111 | MS.gene064697:intron | 50.0% | |
| GTCAAGGGAAGATGTCACTG+TGG | - | chr3.4:97249987-97250006 | MS.gene064697:CDS | 50.0% | |
| TCACGTGTCTGATCTTGACC+AGG | + | chr3.4:97248072-97248091 | None:intergenic | 50.0% | |
| TGGCACTTCAGGCAATGTCT+AGG | - | chr3.4:97249216-97249235 | MS.gene064697:intron | 50.0% | |
| ! | GGAGGTGGAACTTTTGCTTC+AGG | - | chr3.4:97248153-97248172 | MS.gene064697:intron | 50.0% |
| ! | GGGATAGACCTTGTTGTGTC+TGG | + | chr3.4:97247963-97247982 | None:intergenic | 50.0% |
| !! | CAACTCTGCTTTGAGGTCAG+AGG | + | chr3.4:97248403-97248422 | None:intergenic | 50.0% |
| !! | AGCTGGCGGGTTGGAGTCTT+CGG | + | chr3.4:97249956-97249975 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 97247748 | 97250017 | 97247748 | ID=MS.gene064697 |
| chr3.4 | mRNA | 97247748 | 97250017 | 97247748 | ID=MS.gene064697.t1;Parent=MS.gene064697 |
| chr3.4 | exon | 97249265 | 97250017 | 97249265 | ID=MS.gene064697.t1.exon1;Parent=MS.gene064697.t1 |
| chr3.4 | CDS | 97249265 | 97250017 | 97249265 | ID=cds.MS.gene064697.t1;Parent=MS.gene064697.t1 |
| chr3.4 | exon | 97248267 | 97248649 | 97248267 | ID=MS.gene064697.t1.exon2;Parent=MS.gene064697.t1 |
| chr3.4 | CDS | 97248267 | 97248649 | 97248267 | ID=cds.MS.gene064697.t1;Parent=MS.gene064697.t1 |
| chr3.4 | exon | 97248110 | 97248170 | 97248110 | ID=MS.gene064697.t1.exon3;Parent=MS.gene064697.t1 |
| chr3.4 | CDS | 97248110 | 97248170 | 97248110 | ID=cds.MS.gene064697.t1;Parent=MS.gene064697.t1 |
| chr3.4 | exon | 97247748 | 97247897 | 97247748 | ID=MS.gene064697.t1.exon4;Parent=MS.gene064697.t1 |
| chr3.4 | CDS | 97247748 | 97247897 | 97247748 | ID=cds.MS.gene064697.t1;Parent=MS.gene064697.t1 |
| Gene Sequence |
| Protein sequence |
