AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064698


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064698.t1 MTR_3g112300 91.597 595 38 4 1 591 1 587 0.0 1117
MS.gene064698.t1 MTR_3g112300 93.056 432 30 0 1 432 1 432 0.0 847
MS.gene064698.t1 MTR_3g112300 91.954 87 4 2 508 591 431 517 5.82e-42 159
MS.gene064698.t1 MTR_3g112300 92.857 392 28 0 1 392 1 392 0.0 764
MS.gene064698.t1 MTR_3g112300 92.453 371 28 0 1 371 1 371 0.0 721
MS.gene064698.t1 MTR_1g023050 60.526 646 181 19 1 591 1 627 0.0 691
MS.gene064698.t1 MTR_4g051532 56.429 280 109 6 162 434 217 490 1.09e-85 281
MS.gene064698.t1 MTR_1g057790 55.556 279 109 5 162 430 161 434 4.78e-85 278
MS.gene064698.t1 MTR_8g078480 51.095 274 117 5 158 420 384 651 1.69e-82 276
MS.gene064698.t1 MTR_7g106320 55.472 265 108 4 163 420 172 433 6.16e-82 270
MS.gene064698.t1 MTR_5g018860 50.000 272 117 4 161 421 337 600 5.16e-81 270
MS.gene064698.t1 MTR_8g098815 47.518 282 122 6 141 408 163 432 1.59e-75 252
MS.gene064698.t1 MTR_3g112290 46.075 293 124 8 156 431 159 434 4.42e-72 238
MS.gene064698.t1 MTR_7g065050 37.278 338 173 9 158 489 133 437 5.19e-60 208
MS.gene064698.t1 MTR_4g019450 40.278 288 145 5 158 441 192 456 3.62e-58 205
MS.gene064698.t1 MTR_2g095050 40.000 310 137 7 158 441 244 530 6.19e-58 205
MS.gene064698.t1 MTR_1g016490 39.464 261 146 6 159 414 240 493 1.41e-43 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064698.t1 AT1G75410 48.166 409 178 8 32 430 47 431 1.04e-108 336
MS.gene064698.t1 AT1G75410 48.166 409 178 8 32 430 47 431 1.04e-108 336
MS.gene064698.t1 AT1G19700 49.161 417 163 14 34 428 46 435 1.97e-108 336
MS.gene064698.t1 AT1G19700 49.161 417 163 14 34 428 46 435 1.97e-108 336
MS.gene064698.t1 AT1G19700 49.161 417 163 14 34 428 46 435 1.97e-108 336
MS.gene064698.t1 AT1G19700 49.161 417 163 14 34 428 46 435 1.97e-108 336
MS.gene064698.t1 AT1G19700 49.161 417 163 14 34 428 46 435 1.97e-108 336
MS.gene064698.t1 AT2G16400 44.589 462 173 13 141 591 93 482 2.44e-107 331
MS.gene064698.t1 AT4G34610 45.351 441 176 14 165 591 143 532 2.49e-102 320
MS.gene064698.t1 AT4G34610 45.351 441 176 14 165 591 143 532 2.49e-102 320
MS.gene064698.t1 AT4G34610 45.351 441 176 14 165 591 143 532 2.49e-102 320
MS.gene064698.t1 AT4G34610 45.351 441 176 14 165 591 143 532 2.49e-102 320
MS.gene064698.t1 AT1G75410 46.092 371 166 8 32 392 47 393 1.02e-87 278
MS.gene064698.t1 AT2G23760 53.612 263 98 6 165 413 240 492 9.27e-80 264
MS.gene064698.t1 AT2G23760 53.612 263 98 6 165 413 240 492 9.27e-80 264
MS.gene064698.t1 AT2G23760 53.612 263 98 6 165 413 240 492 9.27e-80 264
MS.gene064698.t1 AT2G35940 50.189 265 112 5 158 406 186 446 2.55e-77 258
MS.gene064698.t1 AT2G35940 50.189 265 112 5 158 406 186 446 2.55e-77 258
MS.gene064698.t1 AT2G35940 50.189 265 112 5 158 406 186 446 2.55e-77 258
MS.gene064698.t1 AT4G36870 50.562 267 109 6 161 414 311 567 1.94e-76 258
MS.gene064698.t1 AT4G36870 50.562 267 109 6 161 414 311 567 1.94e-76 258
MS.gene064698.t1 AT2G23760 44.762 315 98 7 165 413 240 544 1.13e-69 238
MS.gene064698.t1 AT2G27220 47.177 248 100 4 168 415 82 298 1.41e-66 223
MS.gene064698.t1 AT2G27220 47.177 248 100 4 168 415 82 298 1.41e-66 223
MS.gene064698.t1 AT2G27220 43.985 266 100 5 168 415 82 316 1.32e-62 213
MS.gene064698.t1 AT5G41410 39.506 324 144 7 232 538 265 553 1.31e-61 215
MS.gene064698.t1 AT1G75430 41.758 273 130 7 163 419 17 276 1.36e-61 206
MS.gene064698.t1 AT4G36870 47.561 246 106 6 161 393 311 546 6.03e-61 211
MS.gene064698.t1 AT4G36870 47.541 244 105 6 161 391 311 544 5.97e-60 209
MS.gene064698.t1 AT5G02030 42.701 274 120 6 158 415 166 418 4.14e-55 196
MS.gene064698.t1 AT2G27990 41.985 262 123 5 158 415 258 494 6.55e-51 185
MS.gene064698.t1 AT4G32980 38.433 268 135 6 156 414 195 441 2.04e-46 170
MS.gene064698.t1 AT4G32980 38.433 268 135 6 156 414 195 441 2.04e-46 170
MS.gene064698.t1 AT1G75430 34.667 225 118 7 163 371 17 228 7.98e-30 119
MS.gene064698.t1 AT2G27990 34.404 218 114 5 158 371 258 450 3.29e-25 109

Find 118 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTTTGGACATGGTTGC+TGG 0.171008 3.4:-97257351 MS.gene064698:CDS
TTAATGCGCGTGTGCGTCTT+TGG 0.241731 3.4:-97256703 MS.gene064698:CDS
GACTATCATTTCACAGATTC+AGG 0.242730 3.4:-97256194 MS.gene064698:CDS
ATCCAACAAGTTCTGTCTTT+CGG 0.296338 3.4:+97257726 None:intergenic
GCAAATTGTGGTGTCATCTT+TGG 0.309506 3.4:-97257364 MS.gene064698:CDS
TCATGAGATTAATAATAAAT+TGG 0.315537 3.4:-97256579 MS.gene064698:CDS
CCCAACCAAGCATTCTCTTC+AGG 0.317247 3.4:-97258423 MS.gene064698:CDS
CATCTTTGGACATGGTTGCT+GGG 0.322770 3.4:-97257350 MS.gene064698:CDS
CCTTAAGATATTGAGAGTTT+AGG 0.323728 3.4:+97257941 None:intergenic
CCTAAACTCTCAATATCTTA+AGG 0.324664 3.4:-97257941 MS.gene064698:CDS
CTCCAAGGTAAAAGAGATTA+TGG 0.332690 3.4:-97256602 MS.gene064698:CDS
TTTCCATTCCACGTTGCTTT+CGG 0.349688 3.4:+97257884 None:intergenic
CACATATGATTTAATAGAGT+TGG 0.365395 3.4:-97256381 MS.gene064698:CDS
GAAATATACAAAGAAGAGTT+TGG 0.368762 3.4:-97256665 MS.gene064698:CDS
CGCAAAGCAAGTGTAGTATA+TGG 0.389402 3.4:+97257312 None:intergenic
AAGTGATTCAAAGGAACCTT+GGG 0.404482 3.4:-97257236 MS.gene064698:CDS
ATTCTCTTCAGGGTCCTATA+TGG 0.406017 3.4:-97258412 MS.gene064698:CDS
CAGTCTATGCAAATAACTTC+GGG 0.408568 3.4:-97257796 MS.gene064698:CDS
TATGGTATCAGGTGGCAAAT+TGG 0.411576 3.4:-97256730 MS.gene064698:intron
AATGTGATAGATTGTGGAAA+TGG 0.412066 3.4:-97256473 MS.gene064698:CDS
TTGAGAGTTTAGGAAAATGT+TGG 0.412411 3.4:+97257951 None:intergenic
CGAAACCGGTGTCATTATAC+TGG 0.413951 3.4:+97258154 None:intergenic
GTTACGAAAACACTCCCTTT+TGG 0.415298 3.4:+97258017 None:intergenic
GGAAAGCAACAACACATGTT+TGG 0.421673 3.4:-97256173 MS.gene064698:CDS
TCATTATACTGGTATTGAAA+TGG 0.422426 3.4:+97258165 None:intergenic
CTGTTTCAATACTTCGTGCT+TGG 0.423440 3.4:-97257092 MS.gene064698:CDS
CCAACCAAGCATTCTCTTCA+GGG 0.428447 3.4:-97258422 MS.gene064698:CDS
TTGTATATTTCTTCAACCAT+TGG 0.430158 3.4:+97256677 None:intergenic
AACTGGTTTGACAAGGAATC+AGG 0.432153 3.4:-97256840 MS.gene064698:intron
TCCTTTGAATCACTTGAACT+TGG 0.447044 3.4:+97257244 None:intergenic
ATTCATCAGCGATACGAAAC+CGG 0.447145 3.4:+97258140 None:intergenic
ATAATGCTAGCTAGGCAAAC+TGG 0.452403 3.4:-97256857 MS.gene064698:CDS
CCCTGAAGAGAATGCTTGGT+TGG 0.454991 3.4:+97258422 None:intergenic
TTAGATATAGTAGTTCCCTT+TGG 0.461116 3.4:+97258105 None:intergenic
ACATATGATTTAATAGAGTT+GGG 0.462874 3.4:-97256380 MS.gene064698:CDS
CAAAAGGCACTTCAGCATCT+TGG 0.463824 3.4:-97257162 MS.gene064698:CDS
GGAGGGACAGATGCATTAGA+AGG 0.464657 3.4:+97258186 None:intergenic
TGCATGGAAAGCATGTCTTC+CGG 0.466072 3.4:-97258057 MS.gene064698:CDS
ATCTTTGGACATGGTTGCTG+GGG 0.467421 3.4:-97257349 MS.gene064698:CDS
CAGAGAAAATAATGCTAGCT+AGG 0.467771 3.4:-97256865 MS.gene064698:CDS
CAAGTTCTGTCTTTCGGCTG+AGG 0.471991 3.4:+97257732 None:intergenic
ACCAAGTTTAACACACCTAT+AGG 0.472281 3.4:-97258321 MS.gene064698:CDS
TACACGTTCTCTCGTGGAAG+AGG 0.476889 3.4:+97256502 None:intergenic
CGAGGTGAACATATCCATAT+AGG 0.479681 3.4:+97258398 None:intergenic
ATAGTCACTGTGTCGCCTAT+AGG 0.482382 3.4:+97258306 None:intergenic
CAAGTGATTCAAAGGAACCT+TGG 0.483068 3.4:-97257237 MS.gene064698:CDS
CTCCTCAGATCACTGCCTGC+AGG 0.488491 3.4:-97257989 MS.gene064698:CDS
GCCTATAGGTGTGTTAAACT+TGG 0.490982 3.4:+97258320 None:intergenic
GGTAATGTCATGAAATCCTC+CGG 0.496563 3.4:+97258038 None:intergenic
GGATATCTCACAAGAAGGAT+TGG 0.496624 3.4:+97257753 None:intergenic
TCAGTCTATGCAAATAACTT+CGG 0.500629 3.4:-97257797 MS.gene064698:CDS
TCACAATGTCTCTCTTGCAT+TGG 0.504072 3.4:-97256327 MS.gene064698:CDS
GGATTGGAATTAGAATCATT+AGG 0.508994 3.4:+97257769 None:intergenic
AGCATTGGAATGCTCATCAA+TGG 0.509427 3.4:+97258278 None:intergenic
CCAACAGCTTAGGCAACAAA+AGG 0.510811 3.4:-97257178 MS.gene064698:CDS
CGAGACTAAGAGATAACTCT+TGG 0.512889 3.4:+97258220 None:intergenic
ACACCACAATTTGCATTCGA+TGG 0.516116 3.4:+97257373 None:intergenic
TACATGAGAGCTGTAAGCAT+TGG 0.517302 3.4:+97258263 None:intergenic
CCTGAAGAGAATGCTTGGTT+GGG 0.517326 3.4:+97258423 None:intergenic
GATTTCATGACATTACCAAA+AGG 0.521517 3.4:-97258032 MS.gene064698:CDS
TGTCCGAAAGCAACGTGGAA+TGG 0.521567 3.4:-97257887 MS.gene064698:CDS
TCATCTGAAAATACACTCCA+AGG 0.523657 3.4:-97256617 MS.gene064698:CDS
CAAGAGTTATCTCTTAGTCT+CGG 0.528666 3.4:-97258219 MS.gene064698:CDS
AGCCGAAAGACAGAACTTGT+TGG 0.531781 3.4:-97257728 MS.gene064698:CDS
TAAGCTGTTGGTCCACGTAC+CGG 0.539458 3.4:+97257190 None:intergenic
AAGAGTTATCTCTTAGTCTC+GGG 0.540585 3.4:-97258218 MS.gene064698:CDS
AGGACCCTGAAGAGAATGCT+TGG 0.541911 3.4:+97258418 None:intergenic
GTATTCCTTCTTGTTCCCCA+AGG 0.544341 3.4:+97257220 None:intergenic
ATTTCATGACATTACCAAAA+GGG 0.544569 3.4:-97258031 MS.gene064698:CDS
TCTTTGGACATGGTTGCTGG+GGG 0.546073 3.4:-97257348 MS.gene064698:CDS
ACCAAGTTCAAGTGATTCAA+AGG 0.549397 3.4:-97257245 MS.gene064698:CDS
GGTACGTGGACCAACAGCTT+AGG 0.555219 3.4:-97257188 MS.gene064698:CDS
GAATGCTTGTCGTCTTCCAA+AGG 0.555351 3.4:-97258121 MS.gene064698:CDS
TTGGTGTTATGCGGCAAGCA+TGG 0.558919 3.4:-97257143 MS.gene064698:CDS
CACTGCCTGCAGGATTCACA+AGG 0.565086 3.4:-97257979 MS.gene064698:CDS
TTCAGCATCTTGGTGTTATG+CGG 0.567244 3.4:-97257152 MS.gene064698:CDS
CAACTCTATTAAATCATATG+TGG 0.568553 3.4:+97256382 None:intergenic
TTATACTGGTATTGAAATGG+AGG 0.572976 3.4:+97258168 None:intergenic
AAGAAGGAATACCTCGTCTC+CGG 0.574564 3.4:-97257209 MS.gene064698:CDS
GATAATCCCAACGATAGTGA+TGG 0.576493 3.4:-97257832 MS.gene064698:CDS
GGCAGTGATCTGAGGAGTGA+GGG 0.576558 3.4:+97257995 None:intergenic
AGGAACCTTGGGGAACAAGA+AGG 0.579072 3.4:-97257225 MS.gene064698:CDS
AATACCTCGTCTCCGGTACG+TGG 0.579283 3.4:-97257202 MS.gene064698:CDS
ACATAATAATAATCAGACAT+TGG 0.582601 3.4:-97256246 MS.gene064698:CDS
AATGCTTGTCGTCTTCCAAA+GGG 0.582756 3.4:-97258120 MS.gene064698:CDS
ATTGAAAAGTGTCGAATGCA+TGG 0.591816 3.4:-97258073 MS.gene064698:CDS
TTGAGAAACTGTGAAAGCGA+TGG 0.592333 3.4:-97256302 MS.gene064698:CDS
GGTAACTTTACAACTGTGGA+TGG 0.593227 3.4:-97256359 MS.gene064698:CDS
GTCTATGCAAATAACTTCGG+GGG 0.594987 3.4:-97257794 MS.gene064698:CDS
CAATACCAGTATAATGACAC+CGG 0.603044 3.4:-97258159 MS.gene064698:CDS
TCAATATCTTAAGGCTACAC+AGG 0.606571 3.4:-97257932 MS.gene064698:CDS
GATTATCCAATCCAATGTTG+CGG 0.607575 3.4:+97257848 None:intergenic
TTTACAACTGTGGATGGTGG+TGG 0.611372 3.4:-97256353 MS.gene064698:CDS
GAAAATTGCATGGTAACCAA+AGG 0.613715 3.4:-97256451 MS.gene064698:CDS
GGTTGATACCAGTTACCCCA+AGG 0.615136 3.4:-97256891 MS.gene064698:intron
AACTTTACAACTGTGGATGG+TGG 0.616544 3.4:-97256356 MS.gene064698:CDS
CTAGGCAAACTGGTTTGACA+AGG 0.616619 3.4:-97256847 MS.gene064698:CDS
GCTGAGGATATCTCACAAGA+AGG 0.617588 3.4:+97257748 None:intergenic
GATTCATTGTAGTAATTGTG+AGG 0.618741 3.4:+97258363 None:intergenic
AGGCAGTGATCTGAGGAGTG+AGG 0.618773 3.4:+97257994 None:intergenic
TGGTCCACGTACCGGAGACG+AGG 0.620141 3.4:+97257198 None:intergenic
ATCCTGCAGGCAGTGATCTG+AGG 0.622811 3.4:+97257987 None:intergenic
TGTGCGTCTTTGGAAACCAA+TGG 0.624209 3.4:-97256693 MS.gene064698:CDS
TAGTAATTGTGAGGTAACAA+AGG 0.627033 3.4:+97258372 None:intergenic
TGTGGTGTCATCTTTGGACA+TGG 0.628842 3.4:-97257358 MS.gene064698:CDS
GTTGGGTAACTTTACAACTG+TGG 0.629995 3.4:-97256363 MS.gene064698:CDS
TATGGTTACCTCATCCAACA+TGG 0.631595 3.4:+97257684 None:intergenic
TGTGGAAATGGAAAATTGCA+TGG 0.634656 3.4:-97256461 MS.gene064698:CDS
ATGCAAGAGAGACATTGTGA+TGG 0.664466 3.4:+97256330 None:intergenic
TATACTGGTATTGAAATGGA+GGG 0.666797 3.4:+97258169 None:intergenic
GTGAGGTAACAAAGGACTCG+AGG 0.675570 3.4:+97258380 None:intergenic
CTGCCATCGAATGCAAATTG+TGG 0.686632 3.4:-97257376 MS.gene064698:CDS
ATGGAAAGCATGTCTTCCGG+AGG 0.687343 3.4:-97258054 MS.gene064698:CDS
TCTATGCAAATAACTTCGGG+GGG 0.707179 3.4:-97257793 MS.gene064698:CDS
GTTAATGTCCGAAAGCAACG+TGG 0.708048 3.4:-97257892 MS.gene064698:CDS
AGTCTATGCAAATAACTTCG+GGG 0.713697 3.4:-97257795 MS.gene064698:CDS
AGTGATTCAAAGGAACCTTG+GGG 0.732244 3.4:-97257235 MS.gene064698:CDS
CAAGCATGGAGACCTCAGAG+AGG 0.733220 3.4:-97257129 MS.gene064698:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAAATTAAATCCATAAA+AGG + chr3.4:97256930-97256949 None:intergenic 15.0%
!! TATTATCATATAACTTCTAT+TGG - chr3.4:97257012-97257031 MS.gene064698:intron 15.0%
!! TCATGAGATTAATAATAAAT+TGG - chr3.4:97257989-97258008 MS.gene064698:CDS 15.0%
!!! ATATTTTCAATTAGTTGTAA+TGG - chr3.4:97257573-97257592 MS.gene064698:intron 15.0%
!!! ATTATTATGTCTTTTATGAA+TGG + chr3.4:97258312-97258331 None:intergenic 15.0%
!! ACATAATAATAATCAGACAT+TGG - chr3.4:97258322-97258341 MS.gene064698:CDS 20.0%
!! ACATATGATTTAATAGAGTT+GGG - chr3.4:97258188-97258207 MS.gene064698:CDS 20.0%
!! AGTGTAAAAACTTTATCATA+AGG - chr3.4:97256966-97256985 MS.gene064698:intron 20.0%
!! GAAAATATAAAATTGAGTGA+AGG + chr3.4:97257561-97257580 None:intergenic 20.0%
!! GTATTATAAAGTAACACATA+CGG + chr3.4:97257523-97257542 None:intergenic 20.0%
!! TCTTTAATGAGACATTTATA+TGG - chr3.4:97257815-97257834 MS.gene064698:CDS 20.0%
!! TTCAACTTTCATTTCATAAT+TGG - chr3.4:97257656-97257675 MS.gene064698:intron 20.0%
! AATGAGACATTTATATGGTA+TGG - chr3.4:97257820-97257839 MS.gene064698:CDS 25.0%
! AGATGCAATGCTAAATAATA+TGG + chr3.4:97256905-97256924 None:intergenic 25.0%
! ATTTCATGACATTACCAAAA+GGG - chr3.4:97256537-97256556 MS.gene064698:CDS 25.0%
! CAACTCTATTAAATCATATG+TGG + chr3.4:97258189-97258208 None:intergenic 25.0%
! CACATATGATTTAATAGAGT+TGG - chr3.4:97258187-97258206 MS.gene064698:CDS 25.0%
! GAAAAAAATGTGATAGATTG+TGG - chr3.4:97258089-97258108 MS.gene064698:CDS 25.0%
! GAAATATACAAAGAAGAGTT+TGG - chr3.4:97257903-97257922 MS.gene064698:CDS 25.0%
! TTGTATATTTCTTCAACCAT+TGG + chr3.4:97257894-97257913 None:intergenic 25.0%
!! ATTATTTTCTCTGAATCCTT+GGG + chr3.4:97257696-97257715 None:intergenic 25.0%
!! TCATTATACTGGTATTGAAA+TGG + chr3.4:97256406-97256425 None:intergenic 25.0%
!!! AAGTATTGAAACAGAGTTTT+CGG + chr3.4:97257470-97257489 None:intergenic 25.0%
AATGTGATAGATTGTGGAAA+TGG - chr3.4:97258095-97258114 MS.gene064698:CDS 30.0%
AGTGAAGGATTAGAATTTAG+AGG + chr3.4:97257546-97257565 None:intergenic 30.0%
CATTTATATGGTATGGTATC+AGG - chr3.4:97257827-97257846 MS.gene064698:CDS 30.0%
CCTAAACTCTCAATATCTTA+AGG - chr3.4:97256627-97256646 MS.gene064698:CDS 30.0%
CCTTAAGATATTGAGAGTTT+AGG + chr3.4:97256630-97256649 None:intergenic 30.0%
GAATAATTGTCACACACTAT+CGG + chr3.4:97257062-97257081 None:intergenic 30.0%
GATTCATTGTAGTAATTGTG+AGG + chr3.4:97256208-97256227 None:intergenic 30.0%
GATTTCATGACATTACCAAA+AGG - chr3.4:97256536-97256555 MS.gene064698:CDS 30.0%
GGATTGGAATTAGAATCATT+AGG + chr3.4:97256802-97256821 None:intergenic 30.0%
GTGAAGGATTAGAATTTAGA+GGG + chr3.4:97257545-97257564 None:intergenic 30.0%
TAGTAATTGTGAGGTAACAA+AGG + chr3.4:97256199-97256218 None:intergenic 30.0%
TCAGTCTATGCAAATAACTT+CGG - chr3.4:97256771-97256790 MS.gene064698:intron 30.0%
TTAGATATAGTAGTTCCCTT+TGG + chr3.4:97256466-97256485 None:intergenic 30.0%
TTGAGAGTTTAGGAAAATGT+TGG + chr3.4:97256620-97256639 None:intergenic 30.0%
! AAATTTTCCATCACTATCGT+TGG + chr3.4:97256746-97256765 None:intergenic 30.0%
! AATTTTCCATCACTATCGTT+GGG + chr3.4:97256745-97256764 None:intergenic 30.0%
! CATTATTTTCTCTGAATCCT+TGG + chr3.4:97257697-97257716 None:intergenic 30.0%
! CTCTTCTTTTATTCCATAGT+TGG - chr3.4:97257081-97257100 MS.gene064698:CDS 30.0%
! TATACTGGTATTGAAATGGA+GGG + chr3.4:97256402-97256421 None:intergenic 30.0%
! TTATACTGGTATTGAAATGG+AGG + chr3.4:97256403-97256422 None:intergenic 30.0%
! TTATTTTCTCTGAATCCTTG+GGG + chr3.4:97257695-97257714 None:intergenic 30.0%
!! AGTATTGAAACAGAGTTTTC+GGG + chr3.4:97257469-97257488 None:intergenic 30.0%
AAAAATCCGCAACATTGGAT+TGG - chr3.4:97256714-97256733 MS.gene064698:CDS 35.0%
AAGAGTTATCTCTTAGTCTC+GGG - chr3.4:97256350-97256369 MS.gene064698:CDS 35.0%
AAGTGATTCAAAGGAACCTT+GGG - chr3.4:97257332-97257351 MS.gene064698:CDS 35.0%
ACCAAGTTCAAGTGATTCAA+AGG - chr3.4:97257323-97257342 MS.gene064698:CDS 35.0%
ACCAAGTTTAACACACCTAT+AGG - chr3.4:97256247-97256266 MS.gene064698:CDS 35.0%
AGTCTATGCAAATAACTTCG+GGG - chr3.4:97256773-97256792 MS.gene064698:intron 35.0%
ATCCAACAAGTTCTGTCTTT+CGG + chr3.4:97256845-97256864 None:intergenic 35.0%
CAAAGGCTCAGCATAAAAAA+TGG - chr3.4:97258134-97258153 MS.gene064698:CDS 35.0%
CAAGAAAAAATCCGCAACAT+TGG - chr3.4:97256709-97256728 MS.gene064698:CDS 35.0%
CAAGAGTTATCTCTTAGTCT+CGG - chr3.4:97256349-97256368 MS.gene064698:CDS 35.0%
CAATACCAGTATAATGACAC+CGG - chr3.4:97256409-97256428 MS.gene064698:CDS 35.0%
CAGAGAAAATAATGCTAGCT+AGG - chr3.4:97257703-97257722 MS.gene064698:CDS 35.0%
CAGTCTATGCAAATAACTTC+GGG - chr3.4:97256772-97256791 MS.gene064698:intron 35.0%
CTCCAAGGTAAAAGAGATTA+TGG - chr3.4:97257966-97257985 MS.gene064698:CDS 35.0%
CTGTAATCCTTTCTTTGTAC+TGG - chr3.4:97257140-97257159 MS.gene064698:CDS 35.0%
GAAAATTGCATGGTAACCAA+AGG - chr3.4:97258117-97258136 MS.gene064698:CDS 35.0%
GACTATCATTTCACAGATTC+AGG - chr3.4:97258374-97258393 MS.gene064698:CDS 35.0%
GATTATCCAATCCAATGTTG+CGG + chr3.4:97256723-97256742 None:intergenic 35.0%
GCTGTCATAATAACCAACTA+TGG + chr3.4:97257097-97257116 None:intergenic 35.0%
TCAATATCTTAAGGCTACAC+AGG - chr3.4:97256636-97256655 MS.gene064698:CDS 35.0%
TCATCTGAAAATACACTCCA+AGG - chr3.4:97257951-97257970 MS.gene064698:CDS 35.0%
TCCTTTGAATCACTTGAACT+TGG + chr3.4:97257327-97257346 None:intergenic 35.0%
TGTGGAAATGGAAAATTGCA+TGG - chr3.4:97258107-97258126 MS.gene064698:CDS 35.0%
TTATATGGTATGGTATCAGG+TGG - chr3.4:97257830-97257849 MS.gene064698:CDS 35.0%
TTATTATGACAGCGATGGTT+TGG - chr3.4:97257104-97257123 MS.gene064698:CDS 35.0%
! GACCATAATCTCTTTTACCT+TGG + chr3.4:97257971-97257990 None:intergenic 35.0%
! GCATTGCATCTTTCCTTTTA+TGG - chr3.4:97256914-97256933 MS.gene064698:intron 35.0%
!! ATTGAAAAGTGTCGAATGCA+TGG - chr3.4:97256495-97256514 MS.gene064698:CDS 35.0%
!!! CATTTTTTATGCTGAGCCTT+TGG + chr3.4:97258136-97258155 None:intergenic 35.0%
AAAAACCTTGTGAATCCTGC+AGG + chr3.4:97256597-97256616 None:intergenic 40.0%
AACTTTACAACTGTGGATGG+TGG - chr3.4:97258212-97258231 MS.gene064698:CDS 40.0%
AATGCTTGTCGTCTTCCAAA+GGG - chr3.4:97256448-97256467 MS.gene064698:CDS 40.0%
ACACCACAATTTGCATTCGA+TGG + chr3.4:97257198-97257217 None:intergenic 40.0%
AGTGATTCAAAGGAACCTTG+GGG - chr3.4:97257333-97257352 MS.gene064698:CDS 40.0%
ATAATGCTAGCTAGGCAAAC+TGG - chr3.4:97257711-97257730 MS.gene064698:CDS 40.0%
ATGCAAGAGAGACATTGTGA+TGG + chr3.4:97258241-97258260 None:intergenic 40.0%
ATTCATCAGCGATACGAAAC+CGG + chr3.4:97256431-97256450 None:intergenic 40.0%
ATTCTCTTCAGGGTCCTATA+TGG - chr3.4:97256156-97256175 MS.gene064698:CDS 40.0%
CAAGTGATTCAAAGGAACCT+TGG - chr3.4:97257331-97257350 MS.gene064698:CDS 40.0%
CCTACAACCAGTACAAAGAA+AGG + chr3.4:97257150-97257169 None:intergenic 40.0%
CGAGACTAAGAGATAACTCT+TGG + chr3.4:97256351-97256370 None:intergenic 40.0%
CGAGGTGAACATATCCATAT+AGG + chr3.4:97256173-97256192 None:intergenic 40.0%
CGCAAAGCAAGTGTAGTATA+TGG + chr3.4:97257259-97257278 None:intergenic 40.0%
CTGTTTCAATACTTCGTGCT+TGG - chr3.4:97257476-97257495 MS.gene064698:intron 40.0%
GATAATCCCAACGATAGTGA+TGG - chr3.4:97256736-97256755 MS.gene064698:intron 40.0%
GCCTATAGGTGTGTTAAACT+TGG + chr3.4:97256251-97256270 None:intergenic 40.0%
GGAAAGCAACAACACATGTT+TGG - chr3.4:97258395-97258414 MS.gene064698:CDS 40.0%
GGATATCTCACAAGAAGGAT+TGG + chr3.4:97256818-97256837 None:intergenic 40.0%
GGTAACTTTACAACTGTGGA+TGG - chr3.4:97258209-97258228 MS.gene064698:CDS 40.0%
GGTAATGTCATGAAATCCTC+CGG + chr3.4:97256533-97256552 None:intergenic 40.0%
GTCTATGCAAATAACTTCGG+GGG - chr3.4:97256774-97256793 MS.gene064698:intron 40.0%
GTTGGGTAACTTTACAACTG+TGG - chr3.4:97258205-97258224 MS.gene064698:CDS 40.0%
GTTGGTTATTATGACAGCGA+TGG - chr3.4:97257099-97257118 MS.gene064698:CDS 40.0%
TACATGAGAGCTGTAAGCAT+TGG + chr3.4:97256308-97256327 None:intergenic 40.0%
TATGGTATCAGGTGGCAAAT+TGG - chr3.4:97257838-97257857 MS.gene064698:CDS 40.0%
TATGGTTACCTCATCCAACA+TGG + chr3.4:97256887-97256906 None:intergenic 40.0%
TCACAATGTCTCTCTTGCAT+TGG - chr3.4:97258241-97258260 MS.gene064698:CDS 40.0%
TCTATGCAAATAACTTCGGG+GGG - chr3.4:97256775-97256794 MS.gene064698:intron 40.0%
TTGAGAAACTGTGAAAGCGA+TGG - chr3.4:97258266-97258285 MS.gene064698:CDS 40.0%
! AGCATTGGAATGCTCATCAA+TGG + chr3.4:97256293-97256312 None:intergenic 40.0%
! GACAAAGCTTTTGTCCATGT+TGG - chr3.4:97256870-97256889 MS.gene064698:CDS 40.0%
! GTTACGAAAACACTCCCTTT+TGG + chr3.4:97256554-97256573 None:intergenic 40.0%
! TTTCCATTCCACGTTGCTTT+CGG + chr3.4:97256687-97256706 None:intergenic 40.0%
! TTTTTCTACACGTTCTCTCG+TGG + chr3.4:97258075-97258094 None:intergenic 40.0%
!! AACTGGTTTGACAAGGAATC+AGG - chr3.4:97257728-97257747 MS.gene064698:CDS 40.0%
!! CCTTTCTTTGTACTGGTTGT+AGG - chr3.4:97257147-97257166 MS.gene064698:CDS 40.0%
!! GCAAATTGTGGTGTCATCTT+TGG - chr3.4:97257204-97257223 MS.gene064698:CDS 40.0%
!! TTCAGCATCTTGGTGTTATG+CGG - chr3.4:97257416-97257435 MS.gene064698:intron 40.0%
AAGAAGGAATACCTCGTCTC+CGG - chr3.4:97257359-97257378 MS.gene064698:CDS 45.0%
AGCCGAAAGACAGAACTTGT+TGG - chr3.4:97256840-97256859 MS.gene064698:intron 45.0%
ATAGTCACTGTGTCGCCTAT+AGG + chr3.4:97256265-97256284 None:intergenic 45.0%
ATCTTTGGACATGGTTGCTG+GGG - chr3.4:97257219-97257238 MS.gene064698:CDS 45.0%
CATCTTTGGACATGGTTGCT+GGG - chr3.4:97257218-97257237 MS.gene064698:CDS 45.0%
CCAACAGCTTAGGCAACAAA+AGG - chr3.4:97257390-97257409 MS.gene064698:CDS 45.0%
CCAACCAAGCATTCTCTTCA+GGG - chr3.4:97256146-97256165 MS.gene064698:CDS 45.0%
CCTGAAGAGAATGCTTGGTT+GGG + chr3.4:97256148-97256167 None:intergenic 45.0%
CTGCCATCGAATGCAAATTG+TGG - chr3.4:97257192-97257211 MS.gene064698:CDS 45.0%
GAATGCTTGTCGTCTTCCAA+AGG - chr3.4:97256447-97256466 MS.gene064698:CDS 45.0%
GCTGAGGATATCTCACAAGA+AGG + chr3.4:97256823-97256842 None:intergenic 45.0%
GTATTCCTTCTTGTTCCCCA+AGG + chr3.4:97257351-97257370 None:intergenic 45.0%
GTTAATGTCCGAAAGCAACG+TGG - chr3.4:97256676-97256695 MS.gene064698:CDS 45.0%
TCATCTTTGGACATGGTTGC+TGG - chr3.4:97257217-97257236 MS.gene064698:CDS 45.0%
! CCTTTTGTTGCCTAAGCTGT+TGG + chr3.4:97257393-97257412 None:intergenic 45.0%
! GCTTTTGTCCATGTTGGATG+AGG - chr3.4:97256876-97256895 MS.gene064698:CDS 45.0%
! TGCATGGAAAGCATGTCTTC+CGG - chr3.4:97256511-97256530 MS.gene064698:CDS 45.0%
! TGTGCGTCTTTGGAAACCAA+TGG - chr3.4:97257875-97257894 MS.gene064698:CDS 45.0%
! TTTACAACTGTGGATGGTGG+TGG - chr3.4:97258215-97258234 MS.gene064698:CDS 45.0%
!! CAAAAGGCACTTCAGCATCT+TGG - chr3.4:97257406-97257425 MS.gene064698:intron 45.0%
!! CGAAACCGGTGTCATTATAC+TGG + chr3.4:97256417-97256436 None:intergenic 45.0%
!! CTAGGCAAACTGGTTTGACA+AGG - chr3.4:97257721-97257740 MS.gene064698:CDS 45.0%
!! TGTGGTGTCATCTTTGGACA+TGG - chr3.4:97257210-97257229 MS.gene064698:CDS 45.0%
AGGAACCTTGGGGAACAAGA+AGG - chr3.4:97257343-97257362 MS.gene064698:CDS 50.0%
AGGACCCTGAAGAGAATGCT+TGG + chr3.4:97256153-97256172 None:intergenic 50.0%
CAAGTTCTGTCTTTCGGCTG+AGG + chr3.4:97256839-97256858 None:intergenic 50.0%
CCCAACCAAGCATTCTCTTC+AGG - chr3.4:97256145-97256164 MS.gene064698:CDS 50.0%
CCCTGAAGAGAATGCTTGGT+TGG + chr3.4:97256149-97256168 None:intergenic 50.0%
CTCTGAATCCTTGGGGTAAC+TGG + chr3.4:97257688-97257707 None:intergenic 50.0%
GGAGGGACAGATGCATTAGA+AGG + chr3.4:97256385-97256404 None:intergenic 50.0%
GTGAGGTAACAAAGGACTCG+AGG + chr3.4:97256191-97256210 None:intergenic 50.0%
TAAGCTGTTGGTCCACGTAC+CGG + chr3.4:97257381-97257400 None:intergenic 50.0%
TACACGTTCTCTCGTGGAAG+AGG + chr3.4:97258069-97258088 None:intergenic 50.0%
TCTTTGGACATGGTTGCTGG+GGG - chr3.4:97257220-97257239 MS.gene064698:CDS 50.0%
TGTCCGAAAGCAACGTGGAA+TGG - chr3.4:97256681-97256700 MS.gene064698:CDS 50.0%
TTAATGCGCGTGTGCGTCTT+TGG - chr3.4:97257865-97257884 MS.gene064698:CDS 50.0%
! ATGGAAAGCATGTCTTCCGG+AGG - chr3.4:97256514-97256533 MS.gene064698:CDS 50.0%
! GGTTGATACCAGTTACCCCA+AGG - chr3.4:97257677-97257696 MS.gene064698:intron 50.0%
!! TTGGTGTTATGCGGCAAGCA+TGG - chr3.4:97257425-97257444 MS.gene064698:intron 50.0%
!! TTTTCGGGAAGTCCTCTCTG+AGG + chr3.4:97257454-97257473 None:intergenic 50.0%
AATACCTCGTCTCCGGTACG+TGG - chr3.4:97257366-97257385 MS.gene064698:CDS 55.0%
AGGCAGTGATCTGAGGAGTG+AGG + chr3.4:97256577-97256596 None:intergenic 55.0%
ATCCTGCAGGCAGTGATCTG+AGG + chr3.4:97256584-97256603 None:intergenic 55.0%
CAAGCATGGAGACCTCAGAG+AGG - chr3.4:97257439-97257458 MS.gene064698:intron 55.0%
CACTGCCTGCAGGATTCACA+AGG - chr3.4:97256589-97256608 MS.gene064698:CDS 55.0%
GGCAGTGATCTGAGGAGTGA+GGG + chr3.4:97256576-97256595 None:intergenic 55.0%
GGTACGTGGACCAACAGCTT+AGG - chr3.4:97257380-97257399 MS.gene064698:CDS 55.0%
CTCCTCAGATCACTGCCTGC+AGG - chr3.4:97256579-97256598 MS.gene064698:CDS 60.0%
TTGGACATGGTTGCTGGGGG+TGG - chr3.4:97257223-97257242 MS.gene064698:CDS 60.0%
TGGTCCACGTACCGGAGACG+AGG + chr3.4:97257373-97257392 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 97256139 97258451 97256139 ID=MS.gene064698
chr3.4 mRNA 97256139 97258451 97256139 ID=MS.gene064698.t1;Parent=MS.gene064698
chr3.4 exon 97257693 97258451 97257693 ID=MS.gene064698.t1.exon1;Parent=MS.gene064698.t1
chr3.4 CDS 97257693 97258451 97257693 ID=cds.MS.gene064698.t1;Parent=MS.gene064698.t1
chr3.4 exon 97257069 97257421 97257069 ID=MS.gene064698.t1.exon2;Parent=MS.gene064698.t1
chr3.4 CDS 97257069 97257421 97257069 ID=cds.MS.gene064698.t1;Parent=MS.gene064698.t1
chr3.4 exon 97256841 97256901 97256841 ID=MS.gene064698.t1.exon3;Parent=MS.gene064698.t1
chr3.4 CDS 97256841 97256901 97256841 ID=cds.MS.gene064698.t1;Parent=MS.gene064698.t1
chr3.4 exon 97256139 97256741 97256139 ID=MS.gene064698.t1.exon4;Parent=MS.gene064698.t1
chr3.4 CDS 97256139 97256741 97256139 ID=cds.MS.gene064698.t1;Parent=MS.gene064698.t1
Gene Sequence

>MS.gene064698

ATGTATCCCAACCAAGCATTCTCTTCAGGGTCCTATATGGATATGTTCACCTCGAGTCCTTTGTTACCTCACAATTACTACAATGAATCTGCAGCAAAACAAAATGAAACCAAGTTTAACACACCTATAGGCGACACAGTGACTATACAGTCCATTGATGAGCATTCCAATGCTTACAGCTCTCATGTAGATGAGCAAAATATACAATGCCAAGAGTTATCTCTTAGTCTCGGGACACTACTGCCTTCTAATGCATCTGTCCCTCCATTTCAATACCAGTATAATGACACCGGTTTCGTATCGCTGATGAATGCTTGTCGTCTTCCAAAGGGAACTACTATATCTAACGAAGATGAATTGAAAAGTGTCGAATGCATGGAAAGCATGTCTTCCGGAGGATTTCATGACATTACCAAAAGGGAGTGTTTTCGTAACCCTCACTCCTCAGATCACTGCCTGCAGGATTCACAAGGTTTTTCCAACATTTTCCTAAACTCTCAATATCTTAAGGCTACACAGGAGTTACTTGATGAGATAGTTAATGTCCGAAAGCAACGTGGAATGGAAAAGCAAGAAAAAATCCGCAACATTGGATTGGATAATCCCAACGATAGTGATGGAAAATTTACTAGTCAGTCTATGCAAATAACTTCGGGGGGACCTAATGATTCTAATTCCAATCCTTCTTGTGAGATATCCTCAGCCGAAAGACAGAACTTGTTGGATAAGAAGACAAAGCTTTTGTCCATGTTGGATGAGGTAACCATATTATTTAGCATTGCATCTTTCCTTTTATGGATTTAATTTGTATGCTCTAACAGACTAACAGTGTAAAAACTTTATCATAAGGTTCTATCATCGAAAAAGTTTGACTATTATCATATAACTTCTATTGGTTAATAGTGAAAAATAATTTTATACCGATAGTGTGTGACAATTATTCTCTTCTTTTATTCCATAGTTGGTTATTATGACAGCGATGGTTTGGCTGATTGTCGAATCTGTAATCCTTTCTTTGTACTGGTTGTAGGTAGACAAAAGATACAGACAGTACTGCCATCGAATGCAAATTGTGGTGTCATCTTTGGACATGGTTGCTGGGGGTGGAGCAGCAGAGCCATATACTACACTTGCTTTGCGAACAATTTCGCGTCAGTTTCGCTGCTTGCGCGATGCTATCAGCAACCAAGTTCAAGTGATTCAAAGGAACCTTGGGGAACAAGAAGGAATACCTCGTCTCCGGTACGTGGACCAACAGCTTAGGCAACAAAAGGCACTTCAGCATCTTGGTGTTATGCGGCAAGCATGGAGACCTCAGAGAGGACTTCCCGAAAACTCTGTTTCAATACTTCGTGCTTGGCTCTTTGAACATTTTCTTAATCCGTATGTGTTACTTTATAATACCCTCTAAATTCTAATCCTTCACTCAATTTTATATTTTCAATTAGTTGTAATGGTTTCATATTATGCTACTTTCATAATATTTTCTATCTATGTGTATTTTAATCAAATTCTTTTTCAACTTTCATTTCATAATTGGTTGATACCAGTTACCCCAAGGATTCAGAGAAAATAATGCTAGCTAGGCAAACTGGTTTGACAAGGAATCAGGTACAGTTATAATTAATCAAATAATTTTTTCTGTGCAACATTATTTTCATTAAACTTGTTGCTAATCTTTAATGAGACATTTATATGGTATGGTATCAGGTGGCAAATTGGTTCATTAATGCGCGTGTGCGTCTTTGGAAACCAATGGTTGAAGAAATATACAAAGAAGAGTTTGGTGACTCTGAAATGAACTGCAATTTTTCATCTGAAAATACACTCCAAGGTAAAAGAGATTATGGTCATGAGATTAATAATAAATTGGAAGAAGAGTCACAAGACAATGTACAAATTATTACTAGTGATCATAGTGTACAAGCCTCTTCCACGAGAGAACGTGTAGAAAAAAATGTGATAGATTGTGGAAATGGAAAATTGCATGGTAACCAAAGGCTCAGCATAAAAAATGGCTTTTATTCACAAATAGATTCTGATTCTGCCACATATGATTTAATAGAGTTGGGTAACTTTACAACTGTGGATGGTGGTGGCCATCACAATGTCTCTCTTGCATTGGAGTTGAGAAACTGTGAAAGCGATGGATTAGCTACATCTGATGATGCCATTCATAAAAGACATAATAATAATCAGACATTGGTTTCTTCTTCACAGAGTACTGATTTACTAGACTATCATTTCACAGATTCAGGAAAGCAACAACACATGTTTGGCAATACTCATCTGTTGCATGAATTTGTCGTATGA

Protein sequence

>MS.gene064698.t1

MYPNQAFSSGSYMDMFTSSPLLPHNYYNESAAKQNETKFNTPIGDTVTIQSIDEHSNAYSSHVDEQNIQCQELSLSLGTLLPSNASVPPFQYQYNDTGFVSLMNACRLPKGTTISNEDELKSVECMESMSSGGFHDITKRECFRNPHSSDHCLQDSQGFSNIFLNSQYLKATQELLDEIVNVRKQRGMEKQEKIRNIGLDNPNDSDGKFTSQSMQITSGGPNDSNSNPSCEISSAERQNLLDKKTKLLSMLDEVDKRYRQYCHRMQIVVSSLDMVAGGGAAEPYTTLALRTISRQFRCLRDAISNQVQVIQRNLGEQEGIPRLRYVDQQLRQQKALQHLGVMRQAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMNCNFSSENTLQGKRDYGHEINNKLEEESQDNVQIITSDHSVQASSTRERVEKNVIDCGNGKLHGNQRLSIKNGFYSQIDSDSATYDLIELGNFTTVDGGGHHNVSLALELRNCESDGLATSDDAIHKRHNNNQTLVSSSQSTDLLDYHFTDSGKQQHMFGNTHLLHEFVV