AlfalfaGEDB | MS.gene064700

M. sativa cultivar XinJiangDaYe / MS.gene064700

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064700.t1	PNX73002.1	42.7	854	184	9	105	742	1	765	1.70E-160	576.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064700.t1	Q9LKR4	32.8	177	113	4	107	278	61	236	5.7e-16	87.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064700.t1	A0A2K3L384	42.7	854	184	9	105	742	1	765	1.2e-160	576.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene064700.t1	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064700.t1	MTR_3g080590	84.516	155	20	1	1	151	1	155	1.63e-76	244
MS.gene064700.t1	MTR_7g446520	45.078	193	91	2	94	286	81	258	1.37e-43	161
MS.gene064700.t1	MTR_0645s0010	67.593	108	29	3	284	391	24	125	7.37e-35	129
MS.gene064700.t1	MTR_7g446480	50.893	112	55	0	175	286	140	251	2.62e-30	122
MS.gene064700.t1	MTR_7g028855	43.421	152	81	2	94	241	113	263	3.26e-28	119
MS.gene064700.t1	MTR_7g446510	50.000	112	56	0	175	286	155	266	8.61e-28	115
MS.gene064700.t1	MTR_5g076070	28.916	166	115	2	98	260	50	215	3.92e-19	89.0
MS.gene064700.t1	MTR_1g070355	31.250	176	118	2	101	273	74	249	5.70e-19	91.7
MS.gene064700.t1	MTR_6g022080	25.294	170	124	1	94	260	78	247	2.93e-16	79.7
MS.gene064700.t1	MTR_8g035530	45.455	77	40	1	88	164	1	75	1.19e-15	72.8

Showing 1 to 10 of 13 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064700.t1	AT4G38180	28.986	207	133	5	248	449	441	638	1.39e-17	88.2
MS.gene064700.t1	AT4G38180	30.403	273	167	11	23	286	4	262	8.67e-13	72.4
MS.gene064700.t1	AT4G15090	30.516	213	139	5	284	495	452	656	3.81e-17	86.7
MS.gene064700.t1	AT4G15090	30.516	213	139	5	284	495	452	656	3.81e-17	86.7
MS.gene064700.t1	AT4G15090	30.516	213	139	5	284	495	452	656	3.81e-17	86.7
MS.gene064700.t1	AT4G15090	30.516	213	139	5	284	495	452	656	3.81e-17	86.7
MS.gene064700.t1	AT4G15090	30.516	213	139	5	284	495	452	656	3.81e-17	86.7
MS.gene064700.t1	AT5G28530	32.768	177	113	4	107	278	61	236	4.05e-17	86.3
MS.gene064700.t1	AT5G28530	32.768	177	113	4	107	278	61	236	4.38e-17	85.9
MS.gene064700.t1	AT5G28530	32.768	177	113	4	107	278	61	236	4.96e-17	85.9

Showing 1 to 10 of 29 entries

Previous1 2 3Next

Find 138 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGACCATGTTTCGTCG+AGG	0.652304	3.4:+97290547	MS.gene064700:CDS
AAAATTGATCCACCATTATT+TGG	0.205525	3.4:-97291486	None:intergenic
AAACATCGCAGTGACTATTG+TGG	0.611836	3.4:+97291719	MS.gene064700:CDS
AAAGGACTTATATAATTTCA+CGG	0.493961	3.4:+97289295	MS.gene064700:CDS
AAAGTCTGATTTGCAAGAGA+TGG	0.531904	3.4:+97290464	MS.gene064700:CDS
AAAGTTTAAAGATGTCAAAA+AGG	0.436388	3.4:+97290210	MS.gene064700:CDS
AAATGACCATGTTTCGTCGA+GGG	0.581274	3.4:+97290548	MS.gene064700:CDS
AAATGATGATATAAGGGATA+TGG	0.309095	3.4:+97288824	MS.gene064700:CDS
AAATGGACATGACAAGGATA+AGG	0.461918	3.4:+97290690	MS.gene064700:CDS
AACAAATACAAGCACTAGAA+AGG	0.422563	3.4:+97291209	MS.gene064700:CDS

Showing 1 to 10 of 138 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATAGAGACATACAAG+TGG	+	chr3.4:97289618-97289637	MS.gene064700:intron	30.0%
AACAAATACAAGCACTAGAA+AGG	+	chr3.4:97291209-97291228	MS.gene064700:CDS	30.0%
AACAATAGAGACATACAAGT+GGG	+	chr3.4:97289619-97289638	MS.gene064700:intron	30.0%
AAGGGTTAAAATACAAGATG+GGG	+	chr3.4:97289328-97289347	MS.gene064700:CDS	30.0%
AATTATGCAAGAAATCCACA+AGG	-	chr3.4:97290060-97290079	None:intergenic	30.0%
ACAAATACAAGCACTAGAAA+GGG	+	chr3.4:97291210-97291229	MS.gene064700:CDS	30.0%
ACCTATAGAAAGAACAAGTA+TGG	+	chr3.4:97289518-97289537	MS.gene064700:intron	30.0%
ATACTTGTTCTTTCTATAGG+TGG	-	chr3.4:97289519-97289538	None:intergenic	30.0%
ATATAATTTCACGGATCATC+AGG	+	chr3.4:97289304-97289323	MS.gene064700:CDS	30.0%
ATCATTCGCAACAAATTTGT+TGG	-	chr3.4:97290743-97290762	None:intergenic	30.0%

Showing 1 to 10 of 214 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	97288531	97291754	97288531	ID=MS.gene064700
chr3.4	mRNA	97288531	97291754	97288531	ID=MS.gene064700.t1;Parent=MS.gene064700
chr3.4	exon	97288531	97289380	97288531	ID=MS.gene064700.t1.exon1;Parent=MS.gene064700.t1
chr3.4	CDS	97288531	97289380	97288531	ID=cds.MS.gene064700.t1;Parent=MS.gene064700.t1
chr3.4	exon	97290017	97290957	97290017	ID=MS.gene064700.t1.exon2;Parent=MS.gene064700.t1
chr3.4	CDS	97290017	97290957	97290017	ID=cds.MS.gene064700.t1;Parent=MS.gene064700.t1
chr3.4	exon	97291054	97291275	97291054	ID=MS.gene064700.t1.exon3;Parent=MS.gene064700.t1
chr3.4	CDS	97291054	97291275	97291054	ID=cds.MS.gene064700.t1;Parent=MS.gene064700.t1
chr3.4	exon	97291366	97291596	97291366	ID=MS.gene064700.t1.exon4;Parent=MS.gene064700.t1
chr3.4	CDS	97291366	97291596	97291366	ID=cds.MS.gene064700.t1;Parent=MS.gene064700.t1
chr3.4	exon	97291683	97291754	97291683	ID=MS.gene064700.t1.exon5;Parent=MS.gene064700.t1
chr3.4	CDS	97291683	97291754	97291683	ID=cds.MS.gene064700.t1;Parent=MS.gene064700.t1

Gene Sequence

>MS.gene064700

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTATATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACACTGATAGTGATACAGATGGGGTGGAATTTAACAGTGTTAATGATGTTGACACTGATAGTGATACTGAAGATATAAAAGTCAATAGCAACAACGATGTTCGTATTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAAATGATGATATAAGGGATATGGAATTCAACACAGAGGATGAAGCTATAAAGTTTTATGTATTATTTGCAAAATACCACTGGTTTGAAGTAAGAAAGGATGATGTGAAACGTGATTCTAATGGGAACATTATCATGCGTCAATTAGTATGCAATAAGGAGGGTGTTAATGATGGAAAAAATAAGAAGAATGGCAGCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCAAAACTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTGTTTTCAAACCCTCTCACAACCACGAATTAGCTCCTTTGCGTTTTGTCCATTTGATGCCTAATTACAGCAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCGCAAGGTGTAAGAACATGTCATATCTTGGGTTTTTTGATGGGTCAAAAGGGTGGCCATGAAGGACTTGGGTTTATCAAAAAGGACTTATATAATTTCACGGATCATCAGGCAAGGGTTAAAATACAAGATGGGGATACTTTTGCTACTTTGAGTTATTTCCAAGGTAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCGTTGTTGTTGCATTTGACACCACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCATTTTTGCTTGTGCTTTAATTTGTGATGAAACAATAGAGACATACAAGTGGGTTCTAAATTTGTTTTCAAAGGCCATGTATGACAAACATCCAAAAGCGGTGATTACTGATGGGGATAAATCAATGAGAAAAGCTATCAGAGTTGTGTTTCCAAATACAAGGCATCACCTTTGCGCCTGGCATTTGCATCGAAATGTTGTTCAACATGTGAAGAATTCAAAATTTTTAGAAGAGTTCAAGTCACTGATGTATTCTCCTTGTACACCTGAAAAGTTTGAATCTGAGTGGAAGAGGGTTGTTGAAAATTTTGACCTATCAAACAACAGGTGGGTAAAAAAAATTTATCGGTTGAAGAGAATGTGGGCAAGTGCATACATGCGAGACCATTTTTTGTGTGGTGTTAGAACGACATCAATCTGTGAAGGAGTGAATTCATTTATCAAGAAGTATGTCCGACACAAAAATAGCCTTGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGAATACAGACATAATGAATTATTGTTTGATTTCAAGTCGTTCTATTATCATCCTATGCTGACAACTGCATTGACTACTTTTGAGTCTGAAGCTTCAAAGATATTCACCGGTAAAAAGTTTAAAGATGTCAAAAAGGCGATAGAGGATGTTGTTGCATTATCAGTCATTGAACGAGATGAAGATGAGGATGGAAACATTGTCATTTTCAAGGTTAATGTATTTGGCAAAAAAGATGTAGCTTTTTCGGTATACCTTGACAAGTTGCAGACTAAATTTTTATGTGATTGTAGACGCTTTGAACGCAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTATGACAACATGGATGTGTTTCCTGAAAGTCTGATTTGCAAGAGATGGACAAAGACTGCAAAGAATGATCACATCTCGTCATTTGCCTCCCAAGAAGGTAATGATGAAAAAATGACCATGTTTCGTCGAGGGGCACTTGCCGCTGCGTTCAATAGTCTATGTAATGTTTCGTGTAAGAGCGCAAGTGATTATAAGGAGGCTCTAGAAGGGATTTATAGTCTGTGTAATAAGATAAATAGCCGTCATGAGGGAAATGGACATGACAAGGATAAGGGCAGTAAATTTGTTGCGAGTGATAAGGCCAACAAATTTGTTGCGAATGATCCACTGATGGTGAATGTCAAAGGTGCCCGTAGGAGTAAAAAGTCAACACCGAGGACAAGATGTTGTTCTAATTGTAGAAATCCTGGGCACACAATACGGACGTGTCCAGAACTTGCTGGAATTGGTGTCGTGTCTGAAGATCAAGGGGAGAAGGCTTCACCTATTGAGTCTGATAATGAATCAAAAAGTTTAAGTGTAAGTTGATTATAGTGCATTTCTTGTTATTTTATTTGTTTAATCTGCAAATGAATTTGAAATTGTATATGATATTTTGGTTTATTTCATGTCCAGCTGTCTATGAGTAATGATATAAATGATGACATCCACTCTGTAGCAGTGTCAAATGGTGGACGAGATGTTGAGAAAAGCACTGGTATTACACGTAAGAGGGAATGTGACAATGTTGCATTTTCAACACAAGACTCTGTCAACAAAAGAAAAACAAAAACAAATACAAGCACTAGAAAGGGTGATGCTTGTGTGACTCCAAATATCACAATCAACATTGATAATGTAATACCTTTGTTATAGTATATTTGCTGAAAATTGTGTTGCTTTGGAATATTATATGTTTACTTCTTTATCTTGTTTTAATTGTTGTAGAATGGTGTGACCCGTGACTTTGGACATGAAAAATCTACTCTCAAACAAGACAGCCATTGTGCAAGTTGGAACCATAATGTTGGGTATGGTGTTAATTATTTTAATATGCACTATGGGCTGCCAAATAATGGTGGATCAATTTTTCCACAATTCCCTCCGACAACTACCCTCTCATCACATTCTAACACTGCTCTGCATACTGGAACACACAATGTTCCGAGTTATACACCGGTGAGTATTTTGATTGTTTAGTTTATTAATTGTATTTAATTTGATTATTTTTAATACTTCTGATAATTTTCCTATATTTAAAACAGTTTATGAGTGCGTTGAAGAATGTGGAGCTGTTAGCAAAACATCGCAGTGACTATTGTGGACCAAAACATTGA

Protein sequence

>MS.gene064700.t1

MSTYSEATLPFDVYSDTDEVEFNSVNDIDTDSDTDGVEFNSVNDVDTDSDTEDIKVNSNNDVRIDGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTNDDIRDMEFNTEDEAIKFYVLFAKYHWFEVRKDDVKRDSNGNIIMRQLVCNKEGVNDGKNKKNGSRSTLTIRTNCSAKLRVVYDFVRTIWRVSVFKPSHNHELAPLRFVHLMPNYSKLSEVDKQVASGLHSQGVRTCHILGFLMGQKGGHEGLGFIKKDLYNFTDHQARVKIQDGDTFATLSYFQVNSFIKKYVRHKNSLVDFLHNFERALKEYRHNELLFDFKSFYYHPMLTTALTTFESEASKIFTGKKFKDVKKAIEDVVALSVIERDEDEDGNIVIFKVNVFGKKDVAFSVYLDKLQTKFLCDCRRFERRGLPCSHIICAMKYDNMDVFPESLICKRWTKTAKNDHISSFASQEGNDEKMTMFRRGALAAAFNSLCNVSCKSASDYKEALEGIYSLCNKINSRHEGNGHDKDKGSKFVASDKANKFVANDPLMVNVKGARRSKKSTPRTRCCSNCRNPGHTIRTCPELAGIGVVSEDQGEKASPIESDNESKSLSLSMSNDINDDIHSVAVSNGGRDVEKSTGITRKRECDNVAFSTQDSVNKRKTKTNTSTRKGDACVTPNITINIDNNGVTRDFGHEKSTLKQDSHCASWNHNVGYGVNYFNMHYGLPNNGGSIFPQFPPTTTLSSHSNTALHTGTHNVPSYTPFMSALKNVELLAKHRSDYCGPKH